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Wyszukujesz frazę ""Genome, Microbial"" wg kryterium: Temat


Wyświetlanie 1-17 z 17
Tytuł:
Genome-resolved metagenomics using environmental and clinical samples.
Autorzy:
Kayani MUR; Center for Microbiota and Immunological Diseases, Shanghai General Hospital, Shanghai Institute of Immunology, Shanghai Jiao Tong University, School of Medicine, Shanghai 2,000,025, China.
Huang W; Shanghai Institute of Immunology, Shanghai Jiao Tong University, School of Medicine, Shanghai 200,000, China.
Feng R; Center for Microbiota and Immunological Diseases, Shanghai General Hospital, Shanghai Institute of Immunology, Shanghai Jiao Tong University, School of Medicine, Shanghai 2,000,025, China.
Chen L; Center for Microbiota and Immunological Diseases, Shanghai General Hospital, Shanghai Institute of Immunology, Shanghai Jiao Tong University, School of Medicine, Shanghai 2,000,025, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms:
Genome, Microbial*
Metagenome*
DNA Barcoding, Taxonomic/*methods
Metagenomics/*methods
Microbiota/*genetics
Feces/microbiology ; Genitalia/microbiology ; High-Throughput Nucleotide Sequencing ; Humans ; Mouth/microbiology ; Sequence Analysis, DNA ; Skin/microbiology ; Soil Microbiology ; Water Microbiology
Czasopismo naukowe
Tytuł:
Improved microbial genomes and gene catalog of the chicken gut from metagenomic sequencing of high-fidelity long reads.
Autorzy:
Zhang Y; Guangdong Laboratory for Lingnan Modern Agriculture (Shenzhen Branch), Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong, 518120, China.
Jiang F; Guangdong Laboratory for Lingnan Modern Agriculture (Shenzhen Branch), Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong, 518120, China.
Yang B; Guangdong Laboratory for Lingnan Modern Agriculture (Shenzhen Branch), Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong, 518120, China.
Wang S; Guangdong Laboratory for Lingnan Modern Agriculture (Shenzhen Branch), Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong, 518120, China.
Wang H; Guangdong Laboratory for Lingnan Modern Agriculture (Shenzhen Branch), Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong, 518120, China.
Wang A; Guangdong Laboratory for Lingnan Modern Agriculture (Shenzhen Branch), Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong, 518120, China.
Xu D; Guangdong Laboratory for Lingnan Modern Agriculture (Shenzhen Branch), Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong, 518120, China.
Fan W; Guangdong Laboratory for Lingnan Modern Agriculture (Shenzhen Branch), Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong, 518120, China.
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Źródło:
GigaScience [Gigascience] 2022 Nov 18; Vol. 11.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Metagenome*
Chickens*/genetics
Animals ; RNA, Ribosomal, 16S/genetics ; Metagenomics ; Genome, Microbial
Czasopismo naukowe
Tytuł:
CAMITAX: Taxon labels for microbial genomes.
Autorzy:
Bremges A; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Inhoffenstraße 7, 38124 Braunschweig, Germany.; German Center for Infection Research (DZIF), Partner Site Hannover-Braunschweig, Inhoffenstraße 7, 38124 Braunschweig, Germany.
Fritz A; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Inhoffenstraße 7, 38124 Braunschweig, Germany.
McHardy AC; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Inhoffenstraße 7, 38124 Braunschweig, Germany.
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Źródło:
GigaScience [Gigascience] 2020 Jan 01; Vol. 9 (1).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome, Microbial*
Metagenome*
Computational Biology/*methods
DNA Barcoding, Taxonomic/*methods
Metagenomics/*methods
Algorithms ; Databases, Genetic ; Phylogeny ; RNA, Ribosomal, 16S/genetics
Czasopismo naukowe
Tytuł:
Microbial genome analysis: the COG approach.
Autorzy:
Galperin MY
Kristensen DM
Makarova KS
Wolf YI
Koonin EV
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2019 Jul 19; Vol. 20 (4), pp. 1063-1070.
Typ publikacji:
Journal Article; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't; Review
MeSH Terms:
Genome, Microbial*
Genomics/*methods
Computational Biology ; Databases, Protein ; Evolution, Molecular ; Genomics/statistics & numerical data ; Molecular Sequence Annotation ; Multigene Family ; Phylogeny ; Proteins/classification ; Proteins/genetics ; Proteins/metabolism
Czasopismo naukowe
Tytuł:
The BioCyc collection of microbial genomes and metabolic pathways.
Autorzy:
Karp PD; SRI Bioinformatics Research Group (BRG).
Billington R; SRI International.
Caspi R; SRI International.
Fulcher CA; SRI International.
Latendresse M; SRI International.
Kothari A; SRI International.
Keseler IM; SRI International.
Krummenacker M; SRI International.
Midford PE; SRI International.
Ong Q; SRI International.
Ong WK; SRI International.
Paley SM; SRI International.
Subhraveti P; SRI International.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2019 Jul 19; Vol. 20 (4), pp. 1085-1093.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Genome, Microbial*
Metabolic Networks and Pathways*
Software*
Computational Biology ; Databases, Genetic ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Genomics ; Internet ; Models, Biological ; Search Engine
Czasopismo naukowe
Tytuł:
Gifted microbes for genome mining and natural product discovery.
Autorzy:
Baltz RH; CognoGen Biotechnology Consulting, 7636 Andora Drive, Sarasota, FL, 34238, USA. .
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Źródło:
Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2017 May; Vol. 44 (4-5), pp. 573-588. Date of Electronic Publication: 2016 Aug 12.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Genome, Microbial*
Actinobacteria/*genetics
Biological Products/*analysis
Alphaproteobacteria/genetics ; Bacterial Proteins/genetics ; Bacteroidetes/genetics ; Betaproteobacteria/genetics ; Cyanobacteria/genetics ; Deltaproteobacteria/genetics ; Epsilonproteobacteria/genetics ; Fermentation ; Gammaproteobacteria/genetics ; Multigene Family ; Transferases (Other Substituted Phosphate Groups)/genetics
Czasopismo naukowe
Tytuł:
Phylogeny-guided (meta)genome mining approach for the targeted discovery of new microbial natural products.
Autorzy:
Kang HS; Department of Bio-industrial Technologies, Konkuk University, Seoul, 05029, Korea. .; Department of Biomedical Science and Engineering, Konkuk University, Seoul, 05029, Korea. .
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Źródło:
Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2017 Feb; Vol. 44 (2), pp. 285-293. Date of Electronic Publication: 2016 Nov 24.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Genome, Microbial*
Metagenome*
Biological Products/*analysis
Genetic Markers ; Genomics ; Lactams, Macrocyclic/metabolism ; Multigene Family ; Phylogeny ; Polyketides/metabolism
Czasopismo naukowe
Tytuł:
Structural and functional analyses of microbial metabolic networks reveal novel insights into genome-scale metabolic fluxes.
Autorzy:
Li G; College of Computer Science and Technology, Jilin University, Changchun, Jilin, China.; Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, GA, USA.
Cao H; Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, GA, USA.; The BESC BioEnergy Research Center, Oak Ridge National Lab, Oak Ridge, TN, USA.
Xu Y; College of Computer Science and Technology, Jilin University, Changchun, Jilin, China.; Computational Systems Biology Lab, Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, GA, USA.; The BESC BioEnergy Research Center, Oak Ridge National Lab, Oak Ridge, TN, USA.; School of Public Health, Jilin University, Changchun, Jilin, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2019 Jul 19; Vol. 20 (4), pp. 1590-1603.
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Metabolic Networks and Pathways*/genetics
Microbiological Phenomena*
Bacteria/genetics ; Bacteria/metabolism ; Cluster Analysis ; Computational Biology ; Escherichia coli K12/genetics ; Escherichia coli K12/metabolism ; Gene Expression Profiling ; Genome, Microbial ; Kinetics ; Models, Biological
Czasopismo naukowe
Tytuł:
Recent development of Ori-Finder system and DoriC database for microbial replication origins.
Autorzy:
Luo H
Quan CL
Peng C
Gao F
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2019 Jul 19; Vol. 20 (4), pp. 1114-1124.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms:
Databases, Genetic*/statistics & numerical data
Replication Origin*
Computational Biology/methods ; DNA Replication/genetics ; Data Mining ; Genome, Microbial ; Internet ; Software
Czasopismo naukowe
Tytuł:
Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters.
Autorzy:
Blin K
Kim HU
Medema MH
Weber T
Pokaż więcej
Źródło:
Briefings in bioinformatics [Brief Bioinform] 2019 Jul 19; Vol. 20 (4), pp. 1103-1113.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Multigene Family*
Software*
Biosynthetic Pathways/*genetics
Biological Products/metabolism ; Computational Biology/methods ; Data Mining/methods ; Databases, Genetic ; Genome, Microbial ; Genome, Plant ; Internet ; Models, Biological
Czasopismo naukowe
Tytuł:
MbtH homology codes to identify gifted microbes for genome mining.
Autorzy:
Baltz RH; CognoGen Biotechnology Consulting, 7636 Andora Drive, Sarasota, FL, 34238, USA, .
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Źródło:
Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2014 Feb; Vol. 41 (2), pp. 357-69. Date of Electronic Publication: 2013 Nov 07.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome, Microbial*
Sequence Homology, Nucleic Acid*
Actinobacteria/*genetics
Bacterial Proteins/*genetics
Peptide Synthases/*metabolism
Actinobacteria/enzymology ; Actinobacteria/metabolism ; Biosynthetic Pathways/genetics ; Genome, Fungal ; Molecular Chaperones/genetics ; Mycobacterium tuberculosis/genetics ; Mycobacterium tuberculosis/metabolism ; Peptide Synthases/genetics ; Secondary Metabolism/genetics
Czasopismo naukowe
Tytuł:
Microbial genome mining for accelerated natural products discovery: is a renaissance in the making?
Autorzy:
Bachmann BO; Department of Chemistry, Vanderbilt University, 7300 Stevenson Center, Nashville, TN, 37225, USA, .
Van Lanen SG
Baltz RH
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Źródło:
Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2014 Feb; Vol. 41 (2), pp. 175-84. Date of Electronic Publication: 2013 Dec 17.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Genome, Microbial*
Biological Products/*metabolism
Drug Discovery/*methods
Secondary Metabolism/*genetics
Biological Products/isolation & purification ; Drug Discovery/trends ; Humans
Czasopismo naukowe
Tytuł:
Lessons learned from the transformation of natural product discovery to a genome-driven endeavor.
Autorzy:
Deane CD; Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Mitchell DA
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Źródło:
Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2014 Feb; Vol. 41 (2), pp. 315-31. Date of Electronic Publication: 2013 Oct 19.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Review
MeSH Terms:
Genome, Microbial*
Biological Products/*metabolism
Bacteria/genetics ; Bacteria/metabolism ; Biological Products/chemistry ; Biosynthetic Pathways/genetics ; Fungi/genetics ; Fungi/metabolism ; Genomics/methods
Czasopismo naukowe
Tytuł:
Toward a global picture of bacterial secondary metabolism.
Autorzy:
Seyedsayamdost MR; Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA. .; Department of Molecular Biology, Princeton University, Princeton, NJ, USA. .
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Źródło:
Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2019 Mar; Vol. 46 (3-4), pp. 301-311. Date of Electronic Publication: 2019 Jan 25.
Typ publikacji:
Journal Article
MeSH Terms:
Secondary Metabolism*
Bacteria/*genetics
Bacteria/*metabolism
Biological Products/*chemistry
Anti-Bacterial Agents/chemistry ; Biosynthetic Pathways/genetics ; Computational Biology ; Drug Discovery ; Genome, Microbial ; High-Throughput Nucleotide Sequencing ; Microbial Interactions ; Multigene Family
Czasopismo naukowe
Tytuł:
Importance of microbial natural products and the need to revitalize their discovery.
Autorzy:
Demain AL; Research Institute for Scientists Emeriti (R.I.S.E.), Drew University, Madison, NJ, 07940, USA, .
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Źródło:
Journal of industrial microbiology & biotechnology [J Ind Microbiol Biotechnol] 2014 Feb; Vol. 41 (2), pp. 185-201. Date of Electronic Publication: 2013 Aug 30.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Drug Discovery*
Biological Products/*metabolism
Anti-Bacterial Agents/metabolism ; Antineoplastic Agents/metabolism ; Biological Products/pharmacology ; Genome, Microbial ; Immunosuppressive Agents/metabolism ; Secondary Metabolism/genetics
Czasopismo naukowe
    Wyświetlanie 1-17 z 17

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