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Tytuł :
Characterization of SARS-CoV-2 ORF6 deletion variants detected in a nosocomial cluster during routine genomic surveillance, Lyon, France.
Autorzy :
Quéromès G; CIRI, Centre International de Recherche en Infectiologie, Team VirPatH, Lyon, Fracne.
Destras G; CIRI, Centre International de Recherche en Infectiologie, Team VirPatH, Lyon, Fracne.; Laboratoire de Virologie, Institut des Agents Infectieux (IAI), Hospices Civils de Lyon, Lyon, France.
Bal A; CIRI, Centre International de Recherche en Infectiologie, Team VirPatH, Lyon, Fracne.; Laboratoire de Virologie, Institut des Agents Infectieux (IAI), Hospices Civils de Lyon, Lyon, France.
Regue H; Laboratoire de Virologie, Institut des Agents Infectieux (IAI), Hospices Civils de Lyon, Lyon, France.
Burfin G; Laboratoire de Virologie, Institut des Agents Infectieux (IAI), Hospices Civils de Lyon, Lyon, France.; Centre National de Référence des virus des infections respiratoires, Lyon, Fracne.
Brun S; Laboratoire de Virologie, Institut des Agents Infectieux (IAI), Hospices Civils de Lyon, Lyon, France.; Centre National de Référence des virus des infections respiratoires, Lyon, Fracne.
Fanget R; Laboratoire de Virologie, Institut des Agents Infectieux (IAI), Hospices Civils de Lyon, Lyon, France.; Centre National de Référence des virus des infections respiratoires, Lyon, Fracne.
Morfin F; CIRI, Centre International de Recherche en Infectiologie, Team VirPatH, Lyon, Fracne.; Laboratoire de Virologie, Institut des Agents Infectieux (IAI), Hospices Civils de Lyon, Lyon, France.
Valette M; CIRI, Centre International de Recherche en Infectiologie, Team VirPatH, Lyon, Fracne.; Laboratoire de Virologie, Institut des Agents Infectieux (IAI), Hospices Civils de Lyon, Lyon, France.; Centre National de Référence des virus des infections respiratoires, Lyon, Fracne.
Trouillet-Assant S; CIRI, Centre International de Recherche en Infectiologie, Team VirPatH, Lyon, Fracne.
Lina B; CIRI, Centre International de Recherche en Infectiologie, Team VirPatH, Lyon, Fracne.; Laboratoire de Virologie, Institut des Agents Infectieux (IAI), Hospices Civils de Lyon, Lyon, France.; Centre National de Référence des virus des infections respiratoires, Lyon, Fracne.
Frobert E; CIRI, Centre International de Recherche en Infectiologie, Team VirPatH, Lyon, Fracne.; Laboratoire de Virologie, Institut des Agents Infectieux (IAI), Hospices Civils de Lyon, Lyon, France.
Josset L; CIRI, Centre International de Recherche en Infectiologie, Team VirPatH, Lyon, Fracne.; Laboratoire de Virologie, Institut des Agents Infectieux (IAI), Hospices Civils de Lyon, Lyon, France.
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Źródło :
Emerging microbes & infections [Emerg Microbes Infect] 2021 Dec; Vol. 10 (1), pp. 167-177.
Typ publikacji :
Journal Article
MeSH Terms :
Genetic Variation*
Genome, Viral*
COVID-19/*epidemiology
Cross Infection/*virology
SARS-CoV-2/*genetics
Viral Proteins/*genetics
Adult ; Aged ; Aged, 80 and over ; Base Sequence ; COVID-19/immunology ; COVID-19/virology ; Cross Infection/epidemiology ; Cross Infection/immunology ; Cytokines/immunology ; Female ; Frameshift Mutation ; France/epidemiology ; Hospitalization ; Humans ; Immunity ; Inflammation ; Male ; Phylogeny ; Sequence Deletion ; Viral Proteins/immunology
Czasopismo naukowe
Tytuł :
Genomic epidemiology and the role of international and regional travel in the SARS-CoV-2 epidemic in Zimbabwe: a retrospective study of routinely collected surveillance data.
Autorzy :
Mashe T; National Microbiology Reference Laboratory, Ministry of Health and Child Care, Harare, Zimbabwe. Electronic address: .
Takawira FT; National Microbiology Reference Laboratory, Ministry of Health and Child Care, Harare, Zimbabwe.
de Oliveira Martins L; Quadram Institute Bioscience, Norwich, UK.
Gudza-Mugabe M; WHO, Harare, Zimbabwe.
Chirenda J; Department of Surgical Sciences, Faculty of Medicine and Health Sciences, University of Zimbabwe, Harare, Zimbabwe.
Munyanyi M; Department of Health Information and Surveilance, Ministry of Health and Child Care, Harare, Zimbabwe.
Chaibva BV; Department of Pharmacy Services, Ministry of Health and Child Care, Harare, Zimbabwe.
Tarupiwa A; National Microbiology Reference Laboratory, Ministry of Health and Child Care, Harare, Zimbabwe.
Gumbo H; National Microbiology Reference Laboratory, Ministry of Health and Child Care, Harare, Zimbabwe.
Juru A; National Microbiology Reference Laboratory, Ministry of Health and Child Care, Harare, Zimbabwe.
Nyagupe C; National Microbiology Reference Laboratory, Ministry of Health and Child Care, Harare, Zimbabwe.
Ruhanya V; Department of Surgical Sciences, Faculty of Medicine and Health Sciences, University of Zimbabwe, Harare, Zimbabwe.
Phiri I; Department of Epidemiology and Disease Control, Ministry of Health and Child Care, Harare, Zimbabwe.
Manangazira P; Department of Epidemiology and Disease Control, Ministry of Health and Child Care, Harare, Zimbabwe.
Goredema A; Department of Epidemiology and Disease Control, Ministry of Health and Child Care, Harare, Zimbabwe.
Danda S; Department of Epidemiology and Disease Control, Ministry of Health and Child Care, Harare, Zimbabwe.
Chabata I; Department of Epidemiology and Disease Control, Ministry of Health and Child Care, Harare, Zimbabwe.
Jonga J; Department of Epidemiology and Disease Control, Ministry of Health and Child Care, Harare, Zimbabwe.
Munharira R; Department of Epidemiology and Disease Control, Ministry of Health and Child Care, Harare, Zimbabwe.
Masunda K; Harare City Health Department, Beatrice Road Infectious Diseases Hospital, Harare, Zimbabwe.
Mukeredzi I; Harare City Health Department, Beatrice Road Infectious Diseases Hospital, Harare, Zimbabwe.
Mangwanya D; Department of Epidemiology and Disease Control, Ministry of Health and Child Care, Harare, Zimbabwe.
Trotter A; Quadram Institute Bioscience, Norwich, UK.
Le Viet T; Quadram Institute Bioscience, Norwich, UK.
Rudder S; Quadram Institute Bioscience, Norwich, UK.
Kay G; Quadram Institute Bioscience, Norwich, UK.
Baker D; Quadram Institute Bioscience, Norwich, UK.
Thilliez G; Quadram Institute Bioscience, Norwich, UK.
Gutierrez AV; Quadram Institute Bioscience, Norwich, UK.
O'Grady J; Quadram Institute Bioscience, Norwich, UK.
Hove M; Department of Curative Services, Ministry of Health and Child Care, Harare, Zimbabwe.
Mutapuri-Zinyowera S; National Microbiology Reference Laboratory, Ministry of Health and Child Care, Harare, Zimbabwe.
Page AJ; Quadram Institute Bioscience, Norwich, UK.
Kingsley RA; Quadram Institute Bioscience, Norwich, UK; School of Biological Sciences, University of East Anglia, Norwich, UK. Electronic address: .
Mhlanga G; Department of Epidemiology and Disease Control, Ministry of Health and Child Care, Harare, Zimbabwe.
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Corporate Authors :
COVID-19 Genomics UK Consortium
SARS-CoV-2 Research Group
Źródło :
The Lancet. Global health [Lancet Glob Health] 2021 Dec; Vol. 9 (12), pp. e1658-e1666. Date of Electronic Publication: 2021 Oct 22.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Epidemics*
Genome, Viral*
Public Health Surveillance*
Travel-Related Illness*
COVID-19/*epidemiology
SARS-CoV-2/*genetics
Adolescent ; Adult ; COVID-19/transmission ; COVID-19/virology ; Child ; Child, Preschool ; Female ; Humans ; Infant ; Male ; Middle Aged ; Molecular Epidemiology ; Retrospective Studies ; Whole Genome Sequencing ; Young Adult ; Zimbabwe/epidemiology
Czasopismo naukowe
Tytuł :
Heterogeneity of SARS-CoV-2 virus produced in cell culture revealed by shotgun proteomics and supported by genome sequencing.
Autorzy :
Gallais F; Département Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE SPI, 30200, Bagnols-sur-Cèze, France.
Pible O; Département Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE SPI, 30200, Bagnols-sur-Cèze, France.
Gaillard JC; Département Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE SPI, 30200, Bagnols-sur-Cèze, France.
Debroas S; Département Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE SPI, 30200, Bagnols-sur-Cèze, France.
Batina H; Département Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE SPI, 30200, Bagnols-sur-Cèze, France.
Ruat S; Département Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE SPI, 30200, Bagnols-sur-Cèze, France.
Sandron F; Centre National de Recherche en Génomique Humaine (CNRGH), Institut de Biologie François Jacob, CEA, Université Paris-Saclay, 91057, Evry, France.
Delafoy D; Centre National de Recherche en Génomique Humaine (CNRGH), Institut de Biologie François Jacob, CEA, Université Paris-Saclay, 91057, Evry, France.
Gerber Z; Centre National de Recherche en Génomique Humaine (CNRGH), Institut de Biologie François Jacob, CEA, Université Paris-Saclay, 91057, Evry, France.
Olaso R; Centre National de Recherche en Génomique Humaine (CNRGH), Institut de Biologie François Jacob, CEA, Université Paris-Saclay, 91057, Evry, France.
Gas F; Département Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE SPI, 30200, Bagnols-sur-Cèze, France.
Bellanger L; Département Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE SPI, 30200, Bagnols-sur-Cèze, France.
Deleuze JF; Centre National de Recherche en Génomique Humaine (CNRGH), Institut de Biologie François Jacob, CEA, Université Paris-Saclay, 91057, Evry, France.
Grenga L; Département Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE SPI, 30200, Bagnols-sur-Cèze, France.
Armengaud J; Département Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE SPI, 30200, Bagnols-sur-Cèze, France. .
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Źródło :
Analytical and bioanalytical chemistry [Anal Bioanal Chem] 2021 Dec; Vol. 413 (29), pp. 7265-7275. Date of Electronic Publication: 2021 May 20.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Proteomics/*methods
SARS-CoV-2/*isolation & purification
Amino Acid Sequence ; Cell Culture Techniques ; Humans ; Real-Time Polymerase Chain Reaction/methods ; SARS-CoV-2/genetics ; SARS-CoV-2/pathogenicity ; Tandem Mass Spectrometry/methods ; Viral Proteins/chemistry ; Virulence
SCR Organism :
SARS-CoV-2 variants
Czasopismo naukowe
Tytuł :
Characterization of the SARS-CoV-2 genomes in Egypt in first and second waves of infection.
Autorzy :
Zekri AN; Cancer Biology Department, Virology and Immunology Unit, National Cancer Institute, Cairo University, Cairo, 11796, Egypt. .
Bahnasy AA; Surgical Pathology Department, National Cancer Institute, Cairo University, Cairo, 11796, Egypt.
Hafez MM; Cancer Biology Department, Virology and Immunology Unit, National Cancer Institute, Cairo University, Cairo, 11796, Egypt.
Hassan ZK; Cancer Biology Department, Virology and Immunology Unit, National Cancer Institute, Cairo University, Cairo, 11796, Egypt.
Ahmed OS; Cancer Biology Department, Virology and Immunology Unit, National Cancer Institute, Cairo University, Cairo, 11796, Egypt.
Soliman HK; Cancer Biology Department, Virology and Immunology Unit, National Cancer Institute, Cairo University, Cairo, 11796, Egypt.
El-Sisi ER; Cancer Biology Department, Virology and Immunology Unit, National Cancer Institute, Cairo University, Cairo, 11796, Egypt.
Dine MHSE; Clinical and Chemical Pathology Department, Faculty of Medicine, Cairo University, Cairo, Egypt.
Solimane MS; Clinical and Chemical Pathology Department, Faculty of Medicine, Cairo University, Cairo, Egypt.
Latife LSA; Clinical and Chemical Pathology Department, Faculty of Medicine, Cairo University, Cairo, Egypt.
Seadawy MG; Main Chemical Laboratories, Egypt Army, Cairo, Egypt.
Elsafty AS; Main Chemical Laboratories, Egypt Army, Cairo, Egypt.
Abouelhoda M; Systems and Biomedical Engineering Department, Faculty of Engineering, Cairo University, Cairo, 12613, Egypt.
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Źródło :
Scientific reports [Sci Rep] 2021 Nov 03; Vol. 11 (1), pp. 21632. Date of Electronic Publication: 2021 Nov 03.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Viral*
SARS-CoV-2*
Whole Genome Sequencing*
COVID-19 ; High-Throughput Nucleotide Sequencing ; Humans ; Pandemics ; Phylogeny
Czasopismo naukowe
Tytuł :
Molecular characterization of the complete genome of a novel partitivirus hosted by the saprobic mushroom Leucocybe candicans.
Autorzy :
Sahin E; Faculty of Science Department of Biology, Ankara University, 06100, Ankara, Tandogan, Turkey. .
Keskin E; Evolutionary Genetics Laboratory (eGL), Faculty of Agriculture Department of Fisheries and Aquaculture, Ankara University, 06110, Ankara, Dışkapı, Turkey.
Akata I; Faculty of Science Department of Biology, Ankara University, 06100, Ankara, Tandogan, Turkey.
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Źródło :
Archives of microbiology [Arch Microbiol] 2021 Nov; Vol. 203 (9), pp. 5825-5830. Date of Electronic Publication: 2021 Aug 24.
Typ publikacji :
Journal Article
MeSH Terms :
Agaricales*/genetics
Genome, Viral*/genetics
Open Reading Frames ; Phylogeny ; Plant Diseases ; RNA, Viral/genetics
SCR Organism :
Leucocybe candicans
Czasopismo naukowe
Tytuł :
The dominant strain of SARS-CoV-2 is a mosaicism.
Autorzy :
Wang W; Shandong Provincial Key Laboratory of Animal Resistance Biology, College of Life Science, Shandong Normal University, Jinan, Shandong 250014, China.
Li CP; Shandong Provincial Key Laboratory of Animal Resistance Biology, College of Life Science, Shandong Normal University, Jinan, Shandong 250014, China.
He M; Shandong Provincial Key Laboratory of Animal Resistance Biology, College of Life Science, Shandong Normal University, Jinan, Shandong 250014, China.
Li SW; Shandong Provincial Key Laboratory of Animal Resistance Biology, College of Life Science, Shandong Normal University, Jinan, Shandong 250014, China.
Cao L; Shandong Provincial Key Laboratory of Animal Resistance Biology, College of Life Science, Shandong Normal University, Jinan, Shandong 250014, China.
Ding NZ; Shandong Provincial Key Laboratory of Animal Resistance Biology, College of Life Science, Shandong Normal University, Jinan, Shandong 250014, China.
He CQ; Shandong Provincial Key Laboratory of Animal Resistance Biology, College of Life Science, Shandong Normal University, Jinan, Shandong 250014, China. Electronic address: .
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Źródło :
Virus research [Virus Res] 2021 Nov; Vol. 305, pp. 198553. Date of Electronic Publication: 2021 Sep 04.
Typ publikacji :
Historical Article; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Evolution, Molecular*
Genome, Viral*
Homologous Recombination*
Mosaicism*
COVID-19/*epidemiology
SARS-CoV-2/*genetics
Americas/epidemiology ; Asia/epidemiology ; Base Sequence ; COVID-19/history ; COVID-19/transmission ; COVID-19/virology ; Europe/epidemiology ; Genomics/methods ; History, 21st Century ; Humans ; Mutation ; Phylogeny ; SARS-CoV-2/classification ; SARS-CoV-2/pathogenicity
SCR Organism :
SARS-CoV-2 variants
Czasopismo naukowe
Tytuł :
Insights on the SARS-CoV-2 genome variability: the lesson learned in Brazil and its impacts on the future of pandemics.
Autorzy :
Grosche VR; São Paulo State University, São José do Rio Preto, São Paulo, Brazil.; Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil.
Santos IA; Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil.
Ferreira GM; Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil.
Dutra JVR; Federal University of Triângulo Mineiro, Campus Universitário Iturama, Iturama, Minas Gerais, Brazil.
Costa LC; Center of Data and Knowledge Integration for Health (CIDACS), Gonçalo Moniz Institute, Oswaldo Cruz Foundation, Salvador, Bahia, Brazil.
Nicolau-Junior N; Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil.
Queiroz ATL; Center of Data and Knowledge Integration for Health (CIDACS), Gonçalo Moniz Institute, Oswaldo Cruz Foundation, Salvador, Bahia, Brazil.
José DP; Federal University of Triângulo Mineiro, Campus Universitário Iturama, Iturama, Minas Gerais, Brazil.
Jardim ACG; São Paulo State University, São José do Rio Preto, São Paulo, Brazil.; Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil.
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Źródło :
Microbial genomics [Microb Genom] 2021 Nov; Vol. 7 (11).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Viral*
Mutation*
COVID-19/*virology
SARS-CoV-2/*genetics
5' Untranslated Regions/genetics ; Adolescent ; Adult ; Aged ; Aged, 80 and over ; Amino Acid Substitution ; Brazil/epidemiology ; COVID-19/epidemiology ; Child ; Child, Preschool ; Female ; Humans ; Infant ; Infant, Newborn ; Male ; Middle Aged ; Nucleic Acid Conformation ; RNA, Viral/chemistry ; RNA, Viral/genetics ; Selection, Genetic ; Young Adult
SCR Organism :
SARS-CoV-2 variants
Czasopismo naukowe
Tytuł :
SARS-CoV-2 B.1.1.7 lineage rapidly spreads and replaces R.1 lineage in Japan: Serial and stationary observation in a community.
Autorzy :
Hirotsu Y; Genome Analysis Center, Yamanashi Central Hospital, 1-1-1 Fujimi, Kofu, Yamanashi, Japan. Electronic address: .
Omata M; Department of Gastroenterology, Yamanashi Central Hospital, 1-1-1 Fujimi, Kofu, Yamanashi, Japan; The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, Japan.
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Źródło :
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [Infect Genet Evol] 2021 Nov; Vol. 95, pp. 105088. Date of Electronic Publication: 2021 Sep 21.
Typ publikacji :
Journal Article; Observational Study; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Viral*
COVID-19/*epidemiology
COVID-19/*transmission
SARS-CoV-2/*genetics
COVID-19/virology ; Epidemiological Monitoring ; Humans ; Japan/epidemiology ; Phylogeny ; Prevalence ; RNA, Viral/genetics ; SARS-CoV-2/classification ; SARS-CoV-2/growth & development ; SARS-CoV-2/pathogenicity ; Whole Genome Sequencing
SCR Organism :
SARS-CoV-2 variants
Czasopismo naukowe
Tytuł :
Analysing the genomes of two tick-borne encephalitis viruses isolated in Hungary in 1952 and 2019.
Autorzy :
Egyed L; Veterinary Medical Research Institute, ELKH, Hungária krt. 21, Budapest 1143, Hungary. Electronic address: .
Biksi I; SCG Diagnosztika Ltd., Délegyháza, Hungary.
Varga T; SCG Diagnosztika Ltd., Délegyháza, Hungary.
Zöldi V; Department of Pest control, National Centre for Epidemiology, Budapest, Hungary.
Dán Á; Danam.Vet. Molbiol, Kőszeg, Hungary.
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Źródło :
Ticks and tick-borne diseases [Ticks Tick Borne Dis] 2021 Nov; Vol. 12 (6), pp. 101806. Date of Electronic Publication: 2021 Aug 13.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Encephalitis Viruses, Tick-Borne/*genetics
Encephalitis, Tick-Borne/*virology
Encephalitis Viruses, Tick-Borne/classification ; Hungary ; Phylogeny ; Seasons ; Time Factors
Czasopismo naukowe
Tytuł :
Does immune recognition of SARS-CoV2 epitopes vary between different ethnic groups?
Autorzy :
Bose T; TCS Research, Tata Consultancy Services Limited, Pune, India.
Pant N; TCS Research, Tata Consultancy Services Limited, Pune, India.
Pinna NK; TCS Research, Tata Consultancy Services Limited, Pune, India.
Bhar S; TCS Research, Tata Consultancy Services Limited, Pune, India.
Dutta A; TCS Research, Tata Consultancy Services Limited, Pune, India.
Mande SS; TCS Research, Tata Consultancy Services Limited, Pune, India.
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Źródło :
Virus research [Virus Res] 2021 Nov; Vol. 305, pp. 198579. Date of Electronic Publication: 2021 Sep 21.
Typ publikacji :
Journal Article
MeSH Terms :
Ethnic Groups*
Genome, Viral*
COVID-19/*immunology
Epitopes, B-Lymphocyte/*immunology
Epitopes, T-Lymphocyte/*immunology
HLA Antigens/*immunology
SARS-CoV-2/*immunology
Africa/epidemiology ; Alleles ; Amino Acid Sequence ; Asia/epidemiology ; CD4-Positive T-Lymphocytes/immunology ; CD4-Positive T-Lymphocytes/virology ; CD8-Positive T-Lymphocytes/immunology ; CD8-Positive T-Lymphocytes/virology ; COVID-19/epidemiology ; COVID-19/genetics ; COVID-19/pathology ; Computational Biology/methods ; Disease Susceptibility ; Epitopes, B-Lymphocyte/classification ; Epitopes, B-Lymphocyte/genetics ; Epitopes, T-Lymphocyte/classification ; Epitopes, T-Lymphocyte/genetics ; Europe/epidemiology ; HLA Antigens/classification ; HLA Antigens/genetics ; Humans ; Middle East/epidemiology ; Oceania/epidemiology ; Principal Component Analysis ; RNA, Viral/genetics ; RNA, Viral/immunology ; SARS-CoV-2/genetics ; SARS-CoV-2/pathogenicity
Czasopismo naukowe
Tytuł :
Phylogenetic reconstruction of the initial stages of the spread of the SARS-CoV-2 virus in the Eurasian and American continents by analyzing genomic data.
Autorzy :
Bukin YS; Limnological Institute Siberian Branch of the Russian Academy of Sciences, Ulan-Batorskaya str., 3, Irkutsk 664033, Russia. Electronic address: .
Bondaryuk AN; Limnological Institute Siberian Branch of the Russian Academy of Sciences, Ulan-Batorskaya str., 3, Irkutsk 664033, Russia; Irkutsk Antiplague Research Institute of Siberia and Far East, Trilisser str., 78, Irkutsk 664047, Russia.
Kulakova NV; Limnological Institute Siberian Branch of the Russian Academy of Sciences, Ulan-Batorskaya str., 3, Irkutsk 664033, Russia.
Balakhonov SV; Irkutsk Antiplague Research Institute of Siberia and Far East, Trilisser str., 78, Irkutsk 664047, Russia.
Dzhioev YP; Irkutsk State Medical University, Krasnogo Vosstaniya str., 1, Irkutsk 664003, Russia.
Zlobin VI; Irkutsk State Medical University, Krasnogo Vosstaniya str., 1, Irkutsk 664003, Russia.
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Źródło :
Virus research [Virus Res] 2021 Nov; Vol. 305, pp. 198551. Date of Electronic Publication: 2021 Aug 26.
Typ publikacji :
Historical Article; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Evolution, Molecular*
Genome, Viral*
Mutation Rate*
COVID-19/*epidemiology
SARS-CoV-2/*genetics
Animals ; Asia/epidemiology ; COVID-19/history ; COVID-19/transmission ; COVID-19/virology ; Chiroptera/virology ; Europe/epidemiology ; Genomics/methods ; History, 20th Century ; History, 21st Century ; Humans ; Middle East/epidemiology ; North America/epidemiology ; Phylogeny ; Polymorphism, Genetic ; SARS-CoV-2/classification ; SARS-CoV-2/pathogenicity ; South America/epidemiology
SCR Organism :
SARS-CoV-2 variants
Czasopismo naukowe
Tytuł :
Complete genome sequence of a novel varicosavirus infecting tall morning glory (Ipomoea purpurea).
Autorzy :
Zhao F; Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, China.; Henan Key Laboratory of Crop Pest Control, Zhengzhou, 450002, China.; IPM Key Laboratory in Southern Part of North China for Ministry of Agriculture, Zhengzhou, 450002, China.
Liu H; Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, China.; Henan Key Laboratory of Crop Pest Control, Zhengzhou, 450002, China.; IPM Key Laboratory in Southern Part of North China for Ministry of Agriculture, Zhengzhou, 450002, China.
Qiao Q; Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, China.; Henan Key Laboratory of Crop Pest Control, Zhengzhou, 450002, China.; IPM Key Laboratory in Southern Part of North China for Ministry of Agriculture, Zhengzhou, 450002, China.
Wang Y; Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, China.; Henan Key Laboratory of Crop Pest Control, Zhengzhou, 450002, China.; IPM Key Laboratory in Southern Part of North China for Ministry of Agriculture, Zhengzhou, 450002, China.
Zhang D; Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, China.; Henan Key Laboratory of Crop Pest Control, Zhengzhou, 450002, China.; IPM Key Laboratory in Southern Part of North China for Ministry of Agriculture, Zhengzhou, 450002, China.
Wang S; Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, China.; Henan Key Laboratory of Crop Pest Control, Zhengzhou, 450002, China.; IPM Key Laboratory in Southern Part of North China for Ministry of Agriculture, Zhengzhou, 450002, China.
Tian Y; Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, China.; Henan Key Laboratory of Crop Pest Control, Zhengzhou, 450002, China.; IPM Key Laboratory in Southern Part of North China for Ministry of Agriculture, Zhengzhou, 450002, China.
Zhang Z; Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, China. .; Henan Key Laboratory of Crop Pest Control, Zhengzhou, 450002, China. .; IPM Key Laboratory in Southern Part of North China for Ministry of Agriculture, Zhengzhou, 450002, China. .
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Źródło :
Archives of virology [Arch Virol] 2021 Nov; Vol. 166 (11), pp. 3225-3228. Date of Electronic Publication: 2021 Sep 14.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Phylogeny*
Ipomoea/*virology
Rhabdoviridae/*genetics
Plant Diseases/virology ; Viral Proteins/genetics ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Phenotypic and genotypic characterization of the new Bacillus cereus phage SWEP1.
Autorzy :
Ruan C; College of Land Science and Technology, China Agricultural University, Beijing, 100193, China.; Department of Environmental Microbiology, Swiss Federal Institute of Aquatic Science and Technology (Eawag), 8600, Dübendorf, Switzerland.
Niu X; College of Land Science and Technology, China Agricultural University, Beijing, 100193, China.
Xiong G; College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074, China.
Chen G; School of Civil and Hydraulic Engineering, Hefei University of Technology, Hefei, 230009, China.
Wu H; College of Land Science and Technology, China Agricultural University, Beijing, 100193, China.
Ma Z; College of Land Science and Technology, China Agricultural University, Beijing, 100193, China.
Zhu K; College of Land Science and Technology, China Agricultural University, Beijing, 100193, China.
Liu Y; School of Earth and Space Sciences, Peking University, Beijing, 100871, China.
Wang G; College of Land Science and Technology, China Agricultural University, Beijing, 100193, China. .
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Źródło :
Archives of virology [Arch Virol] 2021 Nov; Vol. 166 (11), pp. 3183-3188. Date of Electronic Publication: 2021 Sep 10.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Bacillus Phages/*physiology
Bacillus cereus/*virology
Bacillus Phages/genetics ; Bacillus Phages/isolation & purification ; Bacillus cereus/isolation & purification ; Base Composition ; DNA Replication/genetics ; Genomics ; Genotype ; Microscopy, Electron, Transmission ; Phylogeny ; RNA, Transfer/genetics ; Soil Microbiology ; Temperature
Czasopismo naukowe
Tytuł :
Investigating the first stage of the COVID-19 pandemic in Ukraine using epidemiological and genomic data.
Autorzy :
Gankin Y; Quantori, Cambridge, Massachusetts, United States of America.
Nemira A; Department of Computer Science, Georgia State University, Atlanta, Georgia, United States of America.
Koniukhovskii V; EPAM Systems, Saint Petersburg, Russian Federation.
Chowell G; Department of Population Health Sciences, School of Public Health, Georgia State University, Atlanta, Georgia, United States of America.
Weppelmann TA; Department of Internal Medicine, University of South Florida, Tampa, Florida, United States.
Skums P; Department of Computer Science, Georgia State University, Atlanta, Georgia, United States of America.
Kirpich A; Department of Population Health Sciences, School of Public Health, Georgia State University, Atlanta, Georgia, United States of America. Electronic address: .
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Źródło :
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [Infect Genet Evol] 2021 Nov; Vol. 95, pp. 105087. Date of Electronic Publication: 2021 Sep 27.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Genome, Viral*
Models, Statistical*
COVID-19/*epidemiology
COVID-19/*transmission
SARS-CoV-2/*genetics
SARS-CoV-2/*pathogenicity
COVID-19/virology ; China/epidemiology ; Epidemiological Monitoring ; Europe/epidemiology ; Humans ; Incidence ; North America/epidemiology ; Phylogeny ; Physical Distancing ; SARS-CoV-2/classification ; SARS-CoV-2/isolation & purification ; Travel/statistics & numerical data ; Ukraine/epidemiology
SCR Organism :
SARS-CoV-2 variants
Czasopismo naukowe
Tytuł :
Molecular characterization of a novel mycovirus isolated from Rhizoctonia solani AG-1 IA strain 9-11.
Autorzy :
Sun Y; State Key Laboratory for Protection and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, 650201, Yunnan, China.
Li Y; College of Agriculture and Life Sciences, Kunming University, Kunming, 650214, Yunnan, China.
Dong W; State Key Laboratory for Protection and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, 650201, Yunnan, China.
Sun A; State Key Laboratory for Protection and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, 650201, Yunnan, China.
Chen N; State Key Laboratory for Protection and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, 650201, Yunnan, China.
Zhao Z; State Key Laboratory for Protection and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, 650201, Yunnan, China.
Li Y; Zhaotong Plant Protection and Quarantine Station, Zhaotong, 657000, China.
Li C; State Key Laboratory for Protection and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, 650201, Yunnan, China.
Yang G; State Key Laboratory for Protection and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, 650201, Yunnan, China. .
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Źródło :
Archives of virology [Arch Virol] 2021 Nov; Vol. 166 (11), pp. 3229-3232. Date of Electronic Publication: 2021 Sep 15.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Phylogeny*
Fungal Viruses/*genetics
Rhizoctonia/*virology
China ; Fungal Viruses/isolation & purification ; Open Reading Frames ; RNA, Double-Stranded ; Rhizoctonia/isolation & purification ; Viral Proteins/genetics ; Zea mays/microbiology
SCR Organism :
Rhizoctonia solani
Czasopismo naukowe
Tytuł :
A simple pooling salivary test for SARS-CoV-2 diagnosis: A Columbus' egg?
Autorzy :
Pratelli A; Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano (Ba) 70010, Italy. Electronic address: .
Lucente MS; Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano (Ba) 70010, Italy.
Mari V; Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano (Ba) 70010, Italy.
Cordisco M; Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano (Ba) 70010, Italy.
Sposato A; Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano (Ba) 70010, Italy.
Capozza P; Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano (Ba) 70010, Italy.
Lanave G; Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano (Ba) 70010, Italy.
Martella V; Department of Veterinary Medicine, University Aldo Moro of Bari, Valenzano (Ba) 70010, Italy.
Buonavoglia A; Dental Surgeon, Bari 70010, Italy.
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Źródło :
Virus research [Virus Res] 2021 Nov; Vol. 305, pp. 198575. Date of Electronic Publication: 2021 Sep 21.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
COVID-19/*diagnosis
COVID-19 Nucleic Acid Testing/*methods
Coronavirus, Bovine/*genetics
RNA, Viral/*genetics
Specimen Handling/*methods
COVID-19/virology ; COVID-19 Nucleic Acid Testing/economics ; Humans ; Limit of Detection ; Reagent Strips/analysis ; SARS-CoV-2/genetics ; Saliva/virology
Czasopismo naukowe
Tytuł :
Investigating the possible origin and transmission routes of SARS-CoV-2 genomes and variants of concern in Bangladesh.
Autorzy :
Al Nahid A; Department of Biochemistry and Molecular Biology, Shahjalal University of Science and Technology, Sylhet 3114, Bangladesh.
Ghosh A; Department of Biochemistry and Molecular Biology, Shahjalal University of Science and Technology, Sylhet 3114, Bangladesh. Electronic address: .
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Źródło :
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [Infect Genet Evol] 2021 Nov; Vol. 95, pp. 105057. Date of Electronic Publication: 2021 Sep 01.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
COVID-19/*epidemiology
COVID-19/*transmission
SARS-CoV-2/*genetics
SARS-CoV-2/*pathogenicity
Adolescent ; Adult ; Africa/epidemiology ; Aged ; Aged, 80 and over ; Australia/epidemiology ; Bangladesh/epidemiology ; COVID-19/virology ; Child ; Epidemiological Monitoring ; Europe/epidemiology ; Female ; Humans ; Male ; Middle Aged ; Molecular Epidemiology ; Phylogeny ; SARS-CoV-2/classification ; SARS-CoV-2/isolation & purification ; Sequence Analysis, RNA ; Travel/statistics & numerical data ; United States/epidemiology
SCR Organism :
SARS-CoV-2 variants
Czasopismo naukowe
Tytuł :
Understanding the origin of COVID-19 requires to change the paradigm on zoonotic emergence from the spillover to the circulation model.
Autorzy :
Frutos R; Cirad, UMR 17, Intertryp, Montpellier, France. Electronic address: .
Gavotte L; Espace-Dev, Université de Montpellier, Montpellier, France.
Devaux CA; IHU-Méditerranée Infection and CNRS, Marseille, France.
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Źródło :
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [Infect Genet Evol] 2021 Nov; Vol. 95, pp. 104812. Date of Electronic Publication: 2021 Mar 18.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Genome, Viral*
Models, Statistical*
Pandemics*
COVID-19/*epidemiology
SARS-CoV-2/*genetics
Zoonoses/*epidemiology
Animals ; COVID-19/transmission ; COVID-19/virology ; Chiroptera/virology ; Eutheria/virology ; Humans ; Models, Genetic ; Retrospective Studies ; SARS-CoV-2/growth & development ; SARS-CoV-2/pathogenicity ; Stochastic Processes ; Zoonoses/transmission ; Zoonoses/virology
Czasopismo naukowe
Tytuł :
Molecular characterization of two dsRNAs that could correspond to the genome of a new mycovirus that infects the entomopathogenic fungus Beauveria bassiana.
Autorzy :
Shi N; Anhui Provincial Key Laboratory of Microbial Pest Control, Anhui Agricultural University, Hefei, 230036, China.
Hu F; Institute of Plant Protection and Agro-products Safety, Anhui Academy of Agricultural Sciences, Hefei, 230031, China.
Wang P; Anhui Provincial Key Laboratory of Microbial Pest Control, Anhui Agricultural University, Hefei, 230036, China.
Zhang Y; Anhui Provincial Key Laboratory of Microbial Pest Control, Anhui Agricultural University, Hefei, 230036, China.
Zhu Q; Anhui Provincial Key Laboratory of Microbial Pest Control, Anhui Agricultural University, Hefei, 230036, China.
Yang G; School of Plant Protection, Anhui Agricultural University, Hefei, 230036, China.
Huang B; Anhui Provincial Key Laboratory of Microbial Pest Control, Anhui Agricultural University, Hefei, 230036, China. .
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Źródło :
Archives of virology [Arch Virol] 2021 Nov; Vol. 166 (11), pp. 3233-3237. Date of Electronic Publication: 2021 Sep 17.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Phylogeny*
Beauveria/*virology
Double Stranded RNA Viruses/*genetics
Fungal Viruses/*genetics
Beauveria/pathogenicity ; RNA, Double-Stranded ; RNA-Dependent RNA Polymerase/genetics ; Viral Proteins/genetics
Czasopismo naukowe
Tytuł :
Target capture sequencing of SARS-CoV-2 genomes using the ONETest Coronaviruses Plus.
Autorzy :
Zhan SH; Fusion Genomics Corporation, Burnaby, British Columbia, Canada. Electronic address: .
Alamouti SM; Fusion Genomics Corporation, Burnaby, British Columbia, Canada.
Daneshpajouh H; Fusion Genomics Corporation, Burnaby, British Columbia, Canada.
Kwok BS; Fusion Genomics Corporation, Burnaby, British Columbia, Canada.
Lee MH; Fusion Genomics Corporation, Burnaby, British Columbia, Canada.
Khattra J; Fusion Genomics Corporation, Burnaby, British Columbia, Canada.
Houck HJ; Department of Pathology, Immunology, and Laboratory Medicine, University of Florida College of Medicine, Gainesville, FL, USA.
Rand KH; Department of Pathology, Immunology, and Laboratory Medicine, University of Florida College of Medicine, Gainesville, FL, USA.
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Źródło :
Diagnostic microbiology and infectious disease [Diagn Microbiol Infect Dis] 2021 Nov; Vol. 101 (3), pp. 115508. Date of Electronic Publication: 2021 Jul 23.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
COVID-19/*diagnosis
COVID-19/*virology
Genomics/*methods
SARS-CoV-2/*genetics
Adult ; Female ; Humans ; Male ; Middle Aged ; Polymerase Chain Reaction/methods ; Retrospective Studies
Czasopismo naukowe

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