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Tytuł :
Large scale genomic analysis of 3067 SARS-CoV-2 genomes reveals a clonal geo-distribution and a rich genetic variations of hotspots mutations.
Autorzy :
Laamarti M; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Alouane T; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Kartti S; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Chemao-Elfihri MW; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Hakmi M; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Essabbar A; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Laamarti M; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Hlali H; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Bendani H; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Boumajdi N; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Benhrif O; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Allam L; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
El Hafidi N; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
El Jaoudi R; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Allali I; Laboratory of Human Pathologies Biology, Department of Biology, Faculty of Sciences, and Genomic Center of Human Pathologies, Faculty of Medicine and Pharmacy, Mohammed V University, Rabat, Morocco.
Marchoudi N; Anoual Laboratory of Radio-Immuno Analysis, Casablanca, Morocco.
Fekkak J; Anoual Laboratory of Radio-Immuno Analysis, Casablanca, Morocco.
Benrahma H; Faculty of Medicine, Mohammed VI University of Health Sciences (UM6SS), Casablanca, Morocco.
Nejjari C; International School of Public Health, Mohammed VI University of Health Sciences (UM6SS), Casablanca, Morocco.
Amzazi S; Laboratory of Human Pathologies Biology, Department of Biology, Faculty of Sciences, and Genomic Center of Human Pathologies, Faculty of Medicine and Pharmacy, Mohammed V University, Rabat, Morocco.
Belyamani L; Emergency Department, Military Hospital Mohammed V, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
Ibrahimi A; Medical Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical & Pharmacy School, Mohammed Vth University, Rabat, Morocco.
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Źródło :
PloS one [PLoS One] 2020 Nov 10; Vol. 15 (11), pp. e0240345. Date of Electronic Publication: 2020 Nov 10 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genetic Variation*
Genome, Viral*
Betacoronavirus/*genetics
Betacoronavirus/classification ; Betacoronavirus/isolation & purification ; China ; Coronavirus Infections/pathology ; Coronavirus Infections/virology ; Evolution, Molecular ; Humans ; Pandemics ; Phylogeny ; Pneumonia, Viral/pathology ; Pneumonia, Viral/virology ; Protein Structure, Tertiary ; Spike Glycoprotein, Coronavirus/chemistry ; Spike Glycoprotein, Coronavirus/genetics ; Viral Proteins/chemistry ; Viral Proteins/genetics
SCR Disease Name :
COVID-19
Czasopismo naukowe
Tytuł :
Complete genome sequence of a novel Bacillus phage, P59, that infects Bacillus oceanisediminis.
Autorzy :
Feng Z; College of Engineering, Peking University, Beijing, 100871, China.
Liu X; College of Engineering, Peking University, Beijing, 100871, China.
Liu W; State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
Nie Y; College of Engineering, Peking University, Beijing, 100871, China. .
Wu X; College of Engineering, Peking University, Beijing, 100871, China. .; Institute of Ocean Research, Peking University, Beijing, 100871, China. .
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Źródło :
Archives of virology [Arch Virol] 2020 Nov; Vol. 165 (11), pp. 2679-2683. Date of Electronic Publication: 2020 Aug 14.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Phylogeny*
Bacillus/*virology
Bacillus Phages/*genetics
Bacillus Phages/*isolation & purification
Bacillus Phages/classification ; Base Composition ; Base Sequence ; China ; Open Reading Frames ; Whole Genome Sequencing
SCR Organism :
Bacillus oceanisediminis
Czasopismo naukowe
Tytuł :
Complete genome sequence of Buttiauxella phage vB_ButM_GuL6.
Autorzy :
Noreika A; Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Vilnius University Life Sciences Center, Saulėtekio av. 7, 10257, Vilnius, Lithuania.
Meškys R; Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Vilnius University Life Sciences Center, Saulėtekio av. 7, 10257, Vilnius, Lithuania.
Lazutka J; Department of Eukaryote Gene Engineering, Institute of Biotechnology, Life Sciences Center, Saulėtekio av. 7, 10257, Vilnius, Lithuania.
Kaliniene L; Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Vilnius University Life Sciences Center, Saulėtekio av. 7, 10257, Vilnius, Lithuania. .
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Źródło :
Archives of virology [Arch Virol] 2020 Nov; Vol. 165 (11), pp. 2685-2687. Date of Electronic Publication: 2020 Aug 14.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Phylogeny*
Enterobacteriaceae/*virology
Myoviridae/*classification
Crataegus/microbiology ; DNA, Viral/genetics ; Enterobacteriaceae/isolation & purification ; Fruit/microbiology ; Lithuania ; Microscopy, Electron ; Myoviridae/isolation & purification ; Open Reading Frames ; Sequence Analysis, DNA ; Viral Plaque Assay ; Viral Proteins/analysis ; Viral Proteins/chemistry ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Complete genome sequences of two novel dicistroviruses detected in yellow crazy ants (Anoplolepis gracilipes).
Autorzy :
Lee CC; Laboratory of Insect Ecology, Graduate School of Agriculture, Kyoto University, Kyoto, 606-8502, Japan.
Lin CY; Research Institute for Sustainable Humanosphere, Kyoto University, Kyoto, 611-0011, Japan.
Hsu HW; Laboratory of Insect Ecology, Graduate School of Agriculture, Kyoto University, Kyoto, 606-8502, Japan.
Yang CS; Research Institute for Sustainable Humanosphere, Kyoto University, Kyoto, 611-0011, Japan. .; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA. .; Department of Entomology, National Chung Hsing University, Taichung, 402204, Taiwan. .
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Źródło :
Archives of virology [Arch Virol] 2020 Nov; Vol. 165 (11), pp. 2715-2719. Date of Electronic Publication: 2020 Aug 10.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Phylogeny*
Ants/*virology
Dicistroviridae/*classification
Dicistroviridae/*isolation & purification
Amino Acid Sequence ; Animals ; Capsid Proteins/genetics ; Japan ; Malaysia ; Open Reading Frames ; RNA Helicases/genetics ; RNA Replicase/genetics ; RNA, Viral/genetics ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Complete genome sequence of citrus yellow spot virus, a newly discovered member of the family Betaflexiviridae.
Autorzy :
Xuan Z; National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Chongqing, 400712, China.; Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Li S; National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Chongqing, 400712, China.; Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Zhang S; National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Chongqing, 400712, China.; Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Ran W; National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Chongqing, 400712, China.; Department of Agronomy, Purdue University, West Lafayette, IN, 47907, USA.
Zhou Y; National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Chongqing, 400712, China.; Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Yang F; National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Chongqing, 400712, China.
Zhou C; National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Chongqing, 400712, China.; Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
Cao M; National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Chongqing, 400712, China. .; Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China. .
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Źródło :
Archives of virology [Arch Virol] 2020 Nov; Vol. 165 (11), pp. 2709-2713. Date of Electronic Publication: 2020 Sep 02.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Phylogeny*
Citrus/*virology
Flexiviridae/*genetics
Amino Acid Sequence ; China ; Open Reading Frames ; RNA, Viral/genetics ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Complete genome sequence of a novel recombinant avian leukosis virus isolated from a three-yellow chicken.
Autorzy :
Sun T; Technical Center of Qingdao Customs, NO. 70 Qutangxia Road, Qingdao, 266002, Shandong, China.
Wang X; Department of Breast Surgery, Qilu Hospital (Qingdao) of Shandong University, No. 758 Hefei Road, Shibei District, Qingdao, 266000, Shandong, China.
Han W; Technical Center of Qingdao Customs, NO. 70 Qutangxia Road, Qingdao, 266002, Shandong, China.
Ma X; Shanghai Pharmaceutical Group Qingdao Guofeng Pharmaceutical Co. LTD, NO.18 Songhuajiang Road, Economic and Technological Development Area, Qingdao, 266000, China.
Yin W; Technical Center of Qingdao Customs, NO. 70 Qutangxia Road, Qingdao, 266002, Shandong, China.
Fang B; Technical Center of Qingdao Customs, NO. 70 Qutangxia Road, Qingdao, 266002, Shandong, China.
Lin X; Nanning Mootek Intelligent Technology Co., Ltd, Yongfu Road, Yongning District, Nanning, 530000, Guangxi, China. .
Li Y; China Animal Health and Epidemiology Center, Qingdao, 266000, China. .
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Źródło :
Archives of virology [Arch Virol] 2020 Nov; Vol. 165 (11), pp. 2615-2618. Date of Electronic Publication: 2020 Aug 08.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Avian Leukosis/*virology
Avian Leukosis Virus/*classification
Poultry Diseases/*virology
Animals ; Avian Leukosis Virus/isolation & purification ; Chickens ; China ; Phylogeny ; Reassortant Viruses/classification ; Reassortant Viruses/isolation & purification ; Viral Proteins/genetics ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Novel Caulobacter bacteriophages illustrate the diversity of the podovirus genus Rauchvirus.
Autorzy :
Ely B; Department of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA. .
Liese J; Department of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.
Corley S; Department of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.
Nguyen D; Department of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.; Department of Microbiology, University of Georgia, Athens, USA.
Wilson K; Department of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.; Department of Pathology, Microbiology, and Immunology, University of South Carolina School of Medicine, Columbia, USA.
Berrios L; Department of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.
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Źródło :
Archives of virology [Arch Virol] 2020 Nov; Vol. 165 (11), pp. 2549-2554. Date of Electronic Publication: 2020 Sep 01.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Phylogeny*
Caulobacter/*virology
Podoviridae/*classification
Evolution, Molecular ; Gene Order ; Podoviridae/isolation & purification ; Viral Proteins/genetics
Czasopismo naukowe
Tytuł :
Signal hotspot mutations in SARS-CoV-2 genomes evolve as the virus spreads and actively replicates in different parts of the world.
Autorzy :
Weber S; Institute for Clinical and Molecular Virology, Friedrich-Alexander University (FAU) Erlangen-Nürnberg, 91054, Erlangen, Germany.
Ramirez C; Department of Biostatistics, UCLA School of Public Health, Los Angeles, CA, 90095-1772, USA.
Doerfler W; Institute for Clinical and Molecular Virology, Friedrich-Alexander University (FAU) Erlangen-Nürnberg, 91054, Erlangen, Germany; Institute of Genetics, University of Cologne, 50674, Cologne, Germany. Electronic address: .
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Źródło :
Virus research [Virus Res] 2020 Nov; Vol. 289, pp. 198170. Date of Electronic Publication: 2020 Sep 24.
Typ publikacji :
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Viral*
Mutation*
Pandemics*
Betacoronavirus/*genetics
Coronavirus Infections/*virology
Pneumonia, Viral/*virology
RNA, Viral/*genetics
Amino Acid Sequence ; Amino Acid Substitution ; Base Sequence ; Betacoronavirus/pathogenicity ; Betacoronavirus/physiology ; Biological Evolution ; China ; Conserved Sequence ; Coronavirus Infections/epidemiology ; Europe ; Germany ; Global Health ; Humans ; India ; Pneumonia, Viral/epidemiology ; Russia ; Sequence Alignment ; Sequence Homology ; United States ; Virus Replication
SCR Disease Name :
COVID-19
Czasopismo naukowe
Tytuł :
Quantitative phylogenomic evidence reveals a spatially structured SARS-CoV-2 diversity.
Autorzy :
Jones LR; Laboratorio de Virología y Genética Molecular, Facultad de Ciencias Naturales y Ciencias de la Salud, Universidad Nacional de la Patagonia San Juan Bosco, 9 de Julio y Belgrano s/n, (9100), Trelew, Chubut, Argentina; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina. Electronic address: .
Manrique JM; Laboratorio de Virología y Genética Molecular, Facultad de Ciencias Naturales y Ciencias de la Salud, Universidad Nacional de la Patagonia San Juan Bosco, 9 de Julio y Belgrano s/n, (9100), Trelew, Chubut, Argentina; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina.
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Źródło :
Virology [Virology] 2020 Nov; Vol. 550, pp. 70-77. Date of Electronic Publication: 2020 Aug 26.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Disease Outbreaks*
Genetic Variation*
Genome, Viral*
Betacoronavirus/*pathogenicity
Coronavirus Infections/*epidemiology
Coronavirus Infections/*transmission
Pneumonia, Viral/*epidemiology
Pneumonia, Viral/*transmission
Africa/epidemiology ; Americas/epidemiology ; Asia/epidemiology ; Betacoronavirus/classification ; Betacoronavirus/genetics ; Coronavirus Infections/diagnosis ; Europe/epidemiology ; Evolution, Molecular ; Humans ; Oceania/epidemiology ; Open Reading Frames ; Pandemics ; Phylogeny ; Phylogeography ; Pneumonia, Viral/diagnosis ; Viral Proteins/genetics
SCR Disease Name :
COVID-19
Czasopismo naukowe
Tytuł :
Costus stripe mosaic virus, a tentative new member of the genus Potyvirus.
Autorzy :
Alexandre MAV; Laboratório de Fitovirologia Fisiopatológica, Instituto Biológico, Av. Cons. Rodrigues Alves 1252, São Paulo, SP, 04014-002, Brazil. .
Duarte LML; Laboratório de Fitovirologia Fisiopatológica, Instituto Biológico, Av. Cons. Rodrigues Alves 1252, São Paulo, SP, 04014-002, Brazil.
Ramos-González PL; Laboratório de Biologia Molecular Aplicada, Instituto Biológico, Av. Cons. Rodrigues Alves 1252, São Paulo, SP, 04014-002, Brazil.
Chaves ALR; Laboratório de Fitovirologia Fisiopatológica, Instituto Biológico, Av. Cons. Rodrigues Alves 1252, São Paulo, SP, 04014-002, Brazil.
Harakava R; Laboratório de Biologia Molecular Aplicada, Instituto Biológico, Av. Cons. Rodrigues Alves 1252, São Paulo, SP, 04014-002, Brazil.
Rodrigues LK; Laboratório de Fitovirologia Fisiopatológica, Instituto Biológico, Av. Cons. Rodrigues Alves 1252, São Paulo, SP, 04014-002, Brazil.
Chabi-Jesus C; Laboratório de Biologia Molecular Aplicada, Instituto Biológico, Av. Cons. Rodrigues Alves 1252, São Paulo, SP, 04014-002, Brazil.; Escola Superior de Agricultura Luiz de Queiróz, USP, CP 09, Piracicaba, SP, CEP 13418-900, Brazil.
Kitajima EW; Escola Superior de Agricultura Luiz de Queiróz, USP, CP 09, Piracicaba, SP, CEP 13418-900, Brazil.
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Źródło :
Archives of virology [Arch Virol] 2020 Nov; Vol. 165 (11), pp. 2541-2548. Date of Electronic Publication: 2020 Aug 26.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Phylogeny*
Costus/*virology
Mosaic Viruses/*classification
Amino Acid Sequence ; Base Sequence ; Brazil ; Cysteine Endopeptidases/genetics ; Open Reading Frames ; RNA, Viral/genetics ; Sequence Analysis, DNA ; Viral Proteins/genetics
Czasopismo naukowe
Tytuł :
Computational image analysis of the baseplate-tail complex of O1 ElTor vibriophage M4.
Autorzy :
Sen A; Division of Electron Microscopy, ICMR-National Institute of Cholera and Enteric Diseases, P-33 C.I.T Road, Scheme-XM, Beleghata, Kolkata, 700010, India. .; Microscopy and Imaging Center, Texas A&M University, 301 Old Main Dr., College Station, TX, 77843-2257, USA. .
Das S; Division of Electron Microscopy, ICMR-National Institute of Cholera and Enteric Diseases, P-33 C.I.T Road, Scheme-XM, Beleghata, Kolkata, 700010, India.
Ghosh AN; Division of Electron Microscopy, ICMR-National Institute of Cholera and Enteric Diseases, P-33 C.I.T Road, Scheme-XM, Beleghata, Kolkata, 700010, India. .
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Źródło :
Archives of virology [Arch Virol] 2020 Nov; Vol. 165 (11), pp. 2641-2646. Date of Electronic Publication: 2020 Aug 19.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Virus Assembly*
Capsid/*ultrastructure
Myoviridae/*classification
Myoviridae/*ultrastructure
Vibrio cholerae O1/*virology
Genomics ; Imaging, Three-Dimensional ; Myoviridae/physiology ; Phylogeny
Czasopismo naukowe
Tytuł :
Recombination should not be an afterthought.
Autorzy :
Neches RY; DOE Joint Genome Institute, Berkeley, CA, USA. .
McGee MD; School of Biological Sciences, Monash University, Melbourne, Victoria, Australia.
Kyrpides NC; DOE Joint Genome Institute, Berkeley, CA, USA.
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Źródło :
Nature reviews. Microbiology [Nat Rev Microbiol] 2020 Nov; Vol. 18 (11), pp. 606.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Phylogeny*
Betacoronavirus/*genetics
Coronavirus Infections/*virology
Pneumonia, Viral/*virology
Humans ; Pandemics ; Reassortant Viruses
SCR Disease Name :
COVID-19
Czasopismo naukowe
Tytuł :
Molecular characterization of a novel cytorhabdovirus associated with paper mulberry mosaic disease.
Autorzy :
Qiu Y; National Citrus Engineering and Technology Research Center, Citrus Research Institute, Southwest University, Chongqing, China.; State Cultivation Base of Crop Stress Biology for Southern Mountainous Land, Academy of Agricultural Sciences, Southwest University, Chongqing, China.
Zhang S; National Citrus Engineering and Technology Research Center, Citrus Research Institute, Southwest University, Chongqing, China.; State Cultivation Base of Crop Stress Biology for Southern Mountainous Land, Academy of Agricultural Sciences, Southwest University, Chongqing, China.
Jin J; National Citrus Engineering and Technology Research Center, Citrus Research Institute, Southwest University, Chongqing, China.; State Cultivation Base of Crop Stress Biology for Southern Mountainous Land, Academy of Agricultural Sciences, Southwest University, Chongqing, China.
Xie J; National Citrus Engineering and Technology Research Center, Citrus Research Institute, Southwest University, Chongqing, China.; State Cultivation Base of Crop Stress Biology for Southern Mountainous Land, Academy of Agricultural Sciences, Southwest University, Chongqing, China.
Cao Y; National Citrus Engineering and Technology Research Center, Citrus Research Institute, Southwest University, Chongqing, China.; State Cultivation Base of Crop Stress Biology for Southern Mountainous Land, Academy of Agricultural Sciences, Southwest University, Chongqing, China.
Cao M; National Citrus Engineering and Technology Research Center, Citrus Research Institute, Southwest University, Chongqing, China. .; State Cultivation Base of Crop Stress Biology for Southern Mountainous Land, Academy of Agricultural Sciences, Southwest University, Chongqing, China. .
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Źródło :
Archives of virology [Arch Virol] 2020 Nov; Vol. 165 (11), pp. 2703-2707. Date of Electronic Publication: 2020 Aug 26.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Phylogeny*
Morus/*virology
Plant Diseases/*virology
Rhabdoviridae/*classification
China ; Open Reading Frames ; RNA, Viral/genetics ; Rhabdoviridae/isolation & purification ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Emergence and evolution of novel G2b-like porcine epidemic diarrhea virus inter-subgroup G1b recombinants.
Autorzy :
Park J; Animal Virology Laboratory, School of Life Sciences, BK21 plus KNU Creative BioResearch Group, College of Natural Sciences, Kyungpook National University, Daegu, 41566, Republic of Korea.
Lee C; Animal Virology Laboratory, School of Life Sciences, BK21 plus KNU Creative BioResearch Group, College of Natural Sciences, Kyungpook National University, Daegu, 41566, Republic of Korea. .
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Źródło :
Archives of virology [Arch Virol] 2020 Nov; Vol. 165 (11), pp. 2471-2478. Date of Electronic Publication: 2020 Aug 08.
Typ publikacji :
Journal Article
MeSH Terms :
Disease Outbreaks*
Genome, Viral*
Coronavirus Infections/*veterinary
Porcine epidemic diarrhea virus/*genetics
Spike Glycoprotein, Coronavirus/*genetics
Swine Diseases/*epidemiology
Animals ; Coronavirus Infections/epidemiology ; Coronavirus Infections/transmission ; Coronavirus Infections/virology ; Evolution, Molecular ; Genetic Variation ; Genotype ; Phylogeny ; Porcine epidemic diarrhea virus/classification ; Porcine epidemic diarrhea virus/pathogenicity ; Recombination, Genetic ; Republic of Korea/epidemiology ; Swine ; Swine Diseases/transmission ; Swine Diseases/virology ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Complete genome sequence and genome organization of achyranthes virus A, a novel member of the genus Potyvirus.
Autorzy :
Igori D; Department of Biology, School of Mathematics and Natural Sciences, Mongolian National University of Education, Ulaanbaatar, Mongolia.
Lim S; Department of Plant Quarantine, Animal and Plant Quarantine Agency, Plant Quarantine Research Center, Gimcheon, 39660, Republic of Korea.
Kwon SY; Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea.
Cho HS; Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea.
Park JM; Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea.
Kim HS; Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea.
Lee HJ; Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea.
Lee SH; School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, Republic of Korea. .
Moon JS; Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea. .
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Źródło :
Archives of virology [Arch Virol] 2020 Nov; Vol. 165 (11), pp. 2695-2698. Date of Electronic Publication: 2020 Aug 26.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Phylogeny*
Achyranthes/*virology
Plant Diseases/*virology
Potyvirus/*genetics
Amino Acid Sequence ; Open Reading Frames ; Potyvirus/isolation & purification ; RNA, Viral/genetics ; Republic of Korea ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Molecular characterization and pathogenicity analysis of prunus necrotic ringspot virus isolates from China rose (Rosa chinensis Jacq.).
Autorzy :
Xing F; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.; Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, China.
Gao D; Department of Fruit Science, College of Horticulture, China Agricultural University, Beijing, 100193, China.
Liu H; Department of Fruit Science, College of Horticulture, China Agricultural University, Beijing, 100193, China.
Wang H; Department of Fruit Science, College of Horticulture, China Agricultural University, Beijing, 100193, China.
Habili N; The Australian Wine Research Institute Waite Precinct, University of Adelaide, Adelaide, 5000, Australia.
Li S; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. .; Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, China. .
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Źródło :
Archives of virology [Arch Virol] 2020 Nov; Vol. 165 (11), pp. 2479-2486. Date of Electronic Publication: 2020 Aug 09.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Ilarvirus/*isolation & purification
Ilarvirus/*pathogenicity
Rosa/*virology
3' Untranslated Regions ; Base Sequence ; China ; Cucumis sativus/virology ; Ilarvirus/genetics ; Phylogeny ; Plant Diseases/virology ; RNA, Viral/genetics
SCR Organism :
Prunus necrotic ringspot virus
Czasopismo naukowe
Tytuł :
SARS-CoV-2 sequencing: The technological initiative to strengthen early warning systems for public health emergencies in Latin America and the Caribbean
Autorzy :
Álvarez-Díaz DA; Unidad de Secuenciación y Genómica, Dirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, D.C., Colombia; Grupo de Salud Materna y Perinatal, Dirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, D.C., Colombia. .
Laiton-Donato K; Unidad de Secuenciación y Genómica, Dirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, D. C., Colombia. .
Franco-Muñoz C; Grupo de Parasitología, Dirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, D. C., Colombia. .
Mercado-Reyes M; Grupo de Salud Materna y Perinatal, Dirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia; Dirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, D.C., Colombia. .
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Transliterated Title :
[Secuenciación del SARS-CoV-2: la iniciativa tecnológica para fortalecer los sistemas de alerta temprana ante emergencias de salud pública en Latinoamérica y el Caribe].
Źródło :
Biomedica : revista del Instituto Nacional de Salud [Biomedica] 2020 Oct 30; Vol. 40 (Supl. 2), pp. 188-197. Date of Electronic Publication: 2020 Oct 30.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Information Dissemination*
Pandemics*/prevention & control
Population Surveillance*
Sequence Analysis, RNA*
Betacoronavirus/*genetics
Coronavirus Infections/*epidemiology
Molecular Epidemiology/*trends
Pneumonia, Viral/*epidemiology
RNA, Viral/*genetics
Base Sequence ; Caribbean Region ; Communicable Diseases, Emerging ; Coronavirus Infections/prevention & control ; Coronavirus Infections/virology ; Disaster Planning ; Disease Outbreaks ; Humans ; Latin America/epidemiology ; Molecular Epidemiology/methods ; Pneumonia, Viral/prevention & control ; Pneumonia, Viral/virology ; Procedures and Techniques Utilization ; Public Health ; RNA-Seq ; Sustainable Development ; Virus Diseases/epidemiology
SCR Disease Name :
COVID-19
Czasopismo naukowe
Tytuł :
Cryptic transmission of SARS-CoV-2 in Washington state.
Autorzy :
Bedford T; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. .; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Greninger AL; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Roychoudhury P; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Starita LM; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Famulare M; Institute for Disease Modeling, Bellevue, WA, USA.
Huang ML; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Nalla A; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Pepper G; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Reinhardt A; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Xie H; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Shrestha L; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Nguyen TN; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Adler A; Division of Infectious Disease, Seattle Children's Hospital, Seattle, WA, USA.
Brandstetter E; Department of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, WA, USA.
Cho S; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Giroux D; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Han PD; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Fay K; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Frazar CD; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Ilcisin M; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Lacombe K; Division of Infectious Disease, Seattle Children's Hospital, Seattle, WA, USA.
Lee J; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Kiavand A; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Richardson M; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Sibley TR; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Truong M; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Wolf CR; Department of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, WA, USA.
Nickerson DA; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Rieder MJ; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Englund JA; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Division of Infectious Disease, Seattle Children's Hospital, Seattle, WA, USA.; Department of Pediatrics, University of Washington, Seattle, WA, USA.
Hadfield J; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Hodcroft EB; Biozentrum, University of Basel, Basel, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Huddleston J; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.; Molecular and Cellular Biology Program, University of Washington, Seattle, WA, USA.
Moncla LH; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Müller NF; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Neher RA; Biozentrum, University of Basel, Basel, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Deng X; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, USA.
Gu W; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, USA.
Federman S; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, USA.
Chiu C; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, USA.
Duchin JS; Department of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, WA, USA.; Public Health - Seattle & King County, Seattle, WA, USA.
Gautom R; Washington State Department of Health, Shoreline, WA, USA.
Melly G; Washington State Department of Health, Shoreline, WA, USA.
Hiatt B; Washington State Department of Health, Shoreline, WA, USA.
Dykema P; Washington State Department of Health, Shoreline, WA, USA.
Lindquist S; Washington State Department of Health, Shoreline, WA, USA.
Queen K; Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Tao Y; Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Uehara A; Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Tong S; Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
MacCannell D; Office of Advanced Molecular Detection, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Armstrong GL; Office of Advanced Molecular Detection, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Baird GS; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Chu HY; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, WA, USA.
Shendure J; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Howard Hughes Medical Institute, Seattle, WA, USA.
Jerome KR; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
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Corporate Authors :
Seattle Flu Study Investigators
Źródło :
Science (New York, N.Y.) [Science] 2020 Oct 30; Vol. 370 (6516), pp. 571-575. Date of Electronic Publication: 2020 Sep 10.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Viral*
Betacoronavirus/*genetics
Coronavirus Infections/*epidemiology
Coronavirus Infections/*transmission
Pneumonia, Viral/*epidemiology
Pneumonia, Viral/*transmission
Bayes Theorem ; Humans ; Likelihood Functions ; Pandemics ; Phylogeny ; Washington/epidemiology
SCR Disease Name :
COVID-19
Czasopismo naukowe
Tytuł :
SARS-CoV-2 transmission routes from genetic data: A Danish case study
Autorzy :
Bluhm A; Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark.
Christandl M; Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark.
Gesmundo F; Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark.
Ravn Klausen F; Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark.
Mančinska L; Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark.
Steffan V; Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark.
Stilck França D; Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark.
Werner AH; Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark.
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Źródło :
PloS one [PLoS One] 2020 Oct 29; Vol. 15 (10), pp. e0241405. Date of Electronic Publication: 2020 Oct 29 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Viral*
Mutation*
Betacoronavirus/*genetics
Coronavirus Infections/*transmission
Pneumonia, Viral/*transmission
Coronavirus Infections/epidemiology ; Denmark/epidemiology ; Haplotypes ; Humans ; Pandemics ; Phylogeny ; Pneumonia, Viral/epidemiology
SCR Disease Name :
COVID-19
Czasopismo naukowe
Tytuł :
Mutations in the phosphorylation sites of SARS-CoV-2 encoded nucleocapsid protein and structure model of sequestration by protein 14-3-3.
Autorzy :
Tung HYL; Peptide and Protein Chemistry Research Laboratory, Nacbraht Biomedical Research Institute, 3164 21st Street Suite 122, Astoria (NYC), NY, 11106, USA. Electronic address: .
Limtung P; Peptide and Protein Chemistry Research Laboratory, Nacbraht Biomedical Research Institute, 3164 21st Street Suite 122, Astoria (NYC), NY, 11106, USA.
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Źródło :
Biochemical and biophysical research communications [Biochem Biophys Res Commun] 2020 Oct 29; Vol. 532 (1), pp. 134-138. Date of Electronic Publication: 2020 Aug 15.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Viral*
14-3-3 Proteins/*chemistry
Betacoronavirus/*genetics
Host-Pathogen Interactions/*genetics
Nucleocapsid Proteins/*chemistry
14-3-3 Proteins/genetics ; 14-3-3 Proteins/metabolism ; Amino Acid Sequence ; Betacoronavirus/metabolism ; Betacoronavirus/pathogenicity ; Binding Sites ; Coronavirus Infections/virology ; Gene Expression ; Humans ; Molecular Docking Simulation ; Mutation ; Nucleocapsid Proteins/genetics ; Nucleocapsid Proteins/metabolism ; Pandemics ; Phosphorylation ; Pneumonia, Viral/virology ; Protein Binding ; Protein Conformation, alpha-Helical ; Protein Conformation, beta-Strand ; Protein Interaction Domains and Motifs ; Protein Multimerization ; Sequence Alignment ; Sequence Homology, Amino Acid ; Thermodynamics
SCR Disease Name :
COVID-19
Czasopismo naukowe

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