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Tytuł :
Genome analysis of two multidrug-resistant Escherichia coli O8:H9-ST48 strains isolated from lettuce.
Autorzy :
Araújo S; Department of Biology, Campus Santiago, University of Aveiro, 3810-193 Aveiro, Portugal; CESAM, Campus Santiago, University of Aveiro, 3810-193 Aveiro, Portugal.
Tacão M; Department of Biology, Campus Santiago, University of Aveiro, 3810-193 Aveiro, Portugal; CESAM, Campus Santiago, University of Aveiro, 3810-193 Aveiro, Portugal. Electronic address: .
Baraúna R; Institute of Biological Science and CGBS, Federal University of Pará, Belém, Brazil.
Ramos R; Institute of Biological Science and CGBS, Federal University of Pará, Belém, Brazil.
Silva A; Institute of Biological Science and CGBS, Federal University of Pará, Belém, Brazil.
Henriques I; CESAM, Campus Santiago, University of Aveiro, 3810-193 Aveiro, Portugal; University of Coimbra, Department of Life Sciences, Faculty of Sciences and Technology, Coimbra, Portugal.
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Źródło :
Gene [Gene] 2021 Jun 15; Vol. 785, pp. 145603. Date of Electronic Publication: 2021 Mar 23.
Typ publikacji :
Journal Article
MeSH Terms :
Drug Resistance, Multiple, Bacterial*
Genome, Bacterial*
Escherichia coli/*genetics
Escherichia coli/*isolation & purification
Lettuce/*microbiology
Anti-Bacterial Agents/pharmacology ; Escherichia coli/drug effects ; Escherichia coli/pathogenicity ; Polymorphism, Single Nucleotide ; Virulence/genetics ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
The transcriptional landscape of a rewritten bacterial genome reveals control elements and genome design principles.
Autorzy :
van Kooten MJFM; Institute of Molecular Systems Biology, Department of Biology, Eidgenössische Technische Hochschule Zürich, Zürich, Switzerland. .
Scheidegger CA; Institute of Molecular Systems Biology, Department of Biology, Eidgenössische Technische Hochschule Zürich, Zürich, Switzerland.
Christen M; Institute of Molecular Systems Biology, Department of Biology, Eidgenössische Technische Hochschule Zürich, Zürich, Switzerland.
Christen B; Institute of Molecular Systems Biology, Department of Biology, Eidgenössische Technische Hochschule Zürich, Zürich, Switzerland. .
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Źródło :
Nature communications [Nat Commun] 2021 May 24; Vol. 12 (1), pp. 3053. Date of Electronic Publication: 2021 May 24.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Regulation, Bacterial*
Genome, Bacterial*
Transcription, Genetic*
Bacterial Proteins/*genetics
Bacteria/genetics ; Bacterial Proteins/metabolism ; Caulobacter crescentus/genetics ; Plasmids ; Promoter Regions, Genetic ; Sigma Factor ; Synthetic Biology ; tRNA Methyltransferases/genetics
Czasopismo naukowe
Tytuł :
Genomic analyses of Mycobacterium tuberculosis from human lung resections reveal a high frequency of polyclonal infections.
Autorzy :
Moreno-Molina M; Instituto de Biomedicina de Valencia IBV-CSIC, Valencia, Spain.
Shubladze N; National Center for Tuberculosis and Lung Diseases of Georgia, Tbilisi, Georgia.
Khurtsilava I; National Center for Tuberculosis and Lung Diseases of Georgia, Tbilisi, Georgia.
Avaliani Z; National Center for Tuberculosis and Lung Diseases of Georgia, Tbilisi, Georgia.
Bablishvili N; National Center for Tuberculosis and Lung Diseases of Georgia, Tbilisi, Georgia.
Torres-Puente M; Instituto de Biomedicina de Valencia IBV-CSIC, Valencia, Spain.
Villamayor L; FISABIO Public Health, Valencia, Spain.
Gabrielian A; National Institute of Allergy and Infectious Diseases, National Institutes of Health, U.S. Department of Health and Human Services, Maryland, USA.
Rosenthal A; National Institute of Allergy and Infectious Diseases, National Institutes of Health, U.S. Department of Health and Human Services, Maryland, USA.
Vilaplana C; Fundació Institut Germans Trias i Pujol (IGTP), Barcelona, Spain.; Universitat Autònoma de Barcelona (UAB), Barcelona, Spain.; CIBER of Respiratory Diseases, Madrid, Spain.
Gagneux S; Swiss Tropical and Public Health Institute, Basel, Switzerland.; University of Basel, Basel, Switzerland.
Kempker RR; Department of Medicine, Division of Infectious Diseases, Emory University School of Medicine, Atlanta, USA.
Vashakidze S; National Center for Tuberculosis and Lung Diseases of Georgia, Tbilisi, Georgia.
Comas I; Instituto de Biomedicina de Valencia IBV-CSIC, Valencia, Spain. .; CIBER in Epidemiology and Public Health, Madrid, Spain. .
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Źródło :
Nature communications [Nat Commun] 2021 May 11; Vol. 12 (1), pp. 2716. Date of Electronic Publication: 2021 May 11.
Typ publikacji :
Clinical Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Drug Resistance, Multiple, Bacterial/*genetics
Granuloma/*pathology
Mycobacterium tuberculosis/*genetics
Tuberculosis, Multidrug-Resistant/*pathology
Tuberculosis, Pulmonary/*pathology
Antitubercular Agents/therapeutic use ; Biopsy ; Clone Cells ; Cohort Studies ; Genetic Variation ; Georgia (Republic) ; Granuloma/drug therapy ; Granuloma/microbiology ; Granuloma/surgery ; Humans ; Lung/microbiology ; Lung/pathology ; Lung/surgery ; Mycobacterium tuberculosis/classification ; Mycobacterium tuberculosis/drug effects ; Mycobacterium tuberculosis/pathogenicity ; Reactive Oxygen Species/metabolism ; Sputum/microbiology ; Tuberculosis, Multidrug-Resistant/drug therapy ; Tuberculosis, Multidrug-Resistant/microbiology ; Tuberculosis, Multidrug-Resistant/surgery ; Tuberculosis, Pulmonary/drug therapy ; Tuberculosis, Pulmonary/microbiology ; Tuberculosis, Pulmonary/surgery
Czasopismo naukowe
Tytuł :
Genome analysis reveals that the correct name of type strain Adlercreutzia caecicola DSM 22242 is Parvibacter caecicola Clavel et al. 2013.
Autorzy :
Stoll DA; Department of Safety and Quality of Fruit and Vegetables, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Haid-und-Neu-Straße 9, 76131 Karlsruhe, Germany.
Danylec N; Department of Safety and Quality of Fruit and Vegetables, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Haid-und-Neu-Straße 9, 76131 Karlsruhe, Germany.
Grimmler C; Department of Safety and Quality of Meat, E.-C.-Baumann-Straße 20, 95326 Kulmbach, Germany.
Kulling SE; Department of Safety and Quality of Fruit and Vegetables, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Haid-und-Neu-Straße 9, 76131 Karlsruhe, Germany.
Huch M; Department of Safety and Quality of Fruit and Vegetables, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Haid-und-Neu-Straße 9, 76131 Karlsruhe, Germany.
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Źródło :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2021 May; Vol. 71 (5).
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*
Actinobacteria/*genetics
Amino Acid Sequence ; Base Sequence ; DNA, Bacterial/genetics ; Phylogeny ; RNA, Ribosomal, 16S/genetics
SCR Organism :
Parvibacter caecicola
Czasopismo naukowe
Tytuł :
Survival of Salmonella Under Heat Stress is Associated with the Presence/Absence of CRISPR Cas Genes and Iron Levels.
Autorzy :
Sarjit A; School of Public Health, Curtin University, Bentley, Western Australia, Australia.; CSIRO Agriculture and Food, Brisbane, Queensland, Australia.
Ravensdale JT; School of Public Health, Curtin University, Bentley, Western Australia, Australia.
Coorey R; School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia, Australia.
Fegan N; CSIRO Agriculture and Food, Brisbane, Queensland, Australia.
Dykes GA; Graduate Research School, Curtin University, Bentley, Western Australia, Australia. .
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Źródło :
Current microbiology [Curr Microbiol] 2021 May; Vol. 78 (5), pp. 1741-1751. Date of Electronic Publication: 2021 Mar 18.
Typ publikacji :
Journal Article
MeSH Terms :
Clustered Regularly Interspaced Short Palindromic Repeats*
Genome, Bacterial*
Heat-Shock Response ; Iron ; Salmonella/genetics
Czasopismo naukowe
Tytuł :
Genome sequencing and functional annotation of Bacillus sp. strain BS-Z15 isolated from cotton rhizosphere soil having antagonistic activity against Verticillium dahliae.
Autorzy :
Chen ZY; Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, College of Life Science, Xinjiang Normal University, Urumqi, 830054, China.; Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Science, Beijing Normal University, Beijing, 100875, China.
Abuduaini X; Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, College of Life Science, Xinjiang Normal University, Urumqi, 830054, China.
Mamat N; Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, College of Life Science, Xinjiang Normal University, Urumqi, 830054, China.
Yang QL; Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, College of Life Science, Xinjiang Normal University, Urumqi, 830054, China.
Wu MJ; Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, College of Life Science, Xinjiang Normal University, Urumqi, 830054, China.
Lin XR; Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Science, Beijing Normal University, Beijing, 100875, China.
Wang R; Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, College of Life Science, Xinjiang Normal University, Urumqi, 830054, China.
Lin RR; Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Science, Beijing Normal University, Beijing, 100875, China.
Zeng WJ; Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, College of Life Science, Xinjiang Normal University, Urumqi, 830054, China.
Ning HC; Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, College of Life Science, Xinjiang Normal University, Urumqi, 830054, China.
Zhao HP; Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, College of Life Science, Xinjiang Normal University, Urumqi, 830054, China. .; Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Science, Beijing Normal University, Beijing, 100875, China. .
Li JY; Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, College of Life Science, Xinjiang Normal University, Urumqi, 830054, China. .
Zhao HX; Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, College of Life Science, Xinjiang Normal University, Urumqi, 830054, China. .
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Źródło :
Archives of microbiology [Arch Microbiol] 2021 May; Vol. 203 (4), pp. 1565-1575. Date of Electronic Publication: 2021 Jan 05.
Typ publikacji :
Journal Article
MeSH Terms :
Antibiosis*
Ascomycota*
Bacillus*/genetics
Genome, Bacterial*/genetics
Soil Microbiology*
Gossypium/microbiology ; Rhizosphere
SCR Organism :
Verticillium dahliae
Czasopismo naukowe
Tytuł :
Reclassification of Sphaerotilus natans subsp. sulfidivorans Gridneva et al. 2011 as Sphaerotilus sulfidivorans sp. nov. and comparative genome analysis of the genus Sphaerotilus.
Autorzy :
Grabovich MY; Department of Biochemistry and Cell Physiology, Voronezh State University, 1 Universitetskaya pl, Voronezh, 394018, Russia. .
Smolyakov DD; Department of Biochemistry and Cell Physiology, Voronezh State University, 1 Universitetskaya pl, Voronezh, 394018, Russia.
Beletsky AV; Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, 119071, Moscow, Russia.
Mardanov AV; Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, 119071, Moscow, Russia.
Gureeva MV; Department of Biochemistry and Cell Physiology, Voronezh State University, 1 Universitetskaya pl, Voronezh, 394018, Russia.
Markov ND; Department of Biochemistry and Cell Physiology, Voronezh State University, 1 Universitetskaya pl, Voronezh, 394018, Russia.
Rudenko TS; Department of Biochemistry and Cell Physiology, Voronezh State University, 1 Universitetskaya pl, Voronezh, 394018, Russia.
Ravin NV; Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, 119071, Moscow, Russia.
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Źródło :
Archives of microbiology [Arch Microbiol] 2021 May; Vol. 203 (4), pp. 1595-1599. Date of Electronic Publication: 2021 Jan 05.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*/genetics
Sphaerotilus*/classification
Sphaerotilus*/genetics
Phylogeny ; RNA, Ribosomal, 16S/genetics ; Species Specificity ; Sulfur Compounds/metabolism
SCR Organism :
Sphaerotilus natans; Sphaerotilus natans subsp. natans; Sphaerotilus natans subsp. sulfidivorans
Czasopismo naukowe
Tytuł :
minMLST: machine learning for optimization of bacterial strain typing.
Autorzy :
Cohen S; Department of Software and Information Systems Engineering, Ben Gurion University of the Negev, Beer Sheva 8410501, Israel.
Rokach L; Department of Software and Information Systems Engineering, Ben Gurion University of the Negev, Beer Sheva 8410501, Israel.
Motro Y; Department of Health Systems Management, Ben Gurion University of the Negev, Beer Sheva 8410501, Israel.
Moran-Gilad J; Department of Health Systems Management, Ben Gurion University of the Negev, Beer Sheva 8410501, Israel.
Veksler-Lublinsky I; Department of Software and Information Systems Engineering, Ben Gurion University of the Negev, Beer Sheva 8410501, Israel.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2021 Apr 20; Vol. 37 (3), pp. 303-311.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Disease Outbreaks*
Genome, Bacterial*
Bacterial Typing Techniques ; Machine Learning ; Multilocus Sequence Typing ; Phylogeny
Czasopismo naukowe
Tytuł :
Diversity and functional landscapes in the microbiota of animals in the wild.
Autorzy :
Levin D; Wild Biotech, Rehovot, Israel.
Raab N; Wild Biotech, Rehovot, Israel.
Pinto Y; Wild Biotech, Rehovot, Israel.
Rothschild D; Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 7610001 Israel.; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.; Department of Developmental Biology, Stanford University, Stanford, CA 94305, USA.; Department of Genetics, Stanford University, Stanford, CA 94305, USA.
Zanir G; Wild Biotech, Rehovot, Israel.
Godneva A; Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 7610001 Israel.; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
Mellul N; Augmanity, Rehovot, Israel.
Futorian D; Wild Biotech, Rehovot, Israel.
Gal D; Wild Biotech, Rehovot, Israel.
Leviatan S; Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 7610001 Israel.; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
Zeevi D; Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 7610001 Israel.; Center for Studies in Physics and Biology, Rockefeller University, New York, NY 10065, USA.
Bachelet I; Wild Biotech, Rehovot, Israel.; Augmanity, Rehovot, Israel.
Segal E; Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 7610001 Israel. .; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
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Źródło :
Science (New York, N.Y.) [Science] 2021 Apr 16; Vol. 372 (6539). Date of Electronic Publication: 2021 Mar 25.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Bacteria*/classification
Bacteria*/genetics
Bacteria*/isolation & purification
Gastrointestinal Microbiome*
Genome, Bacterial*
Metagenome*
Animals, Wild/*microbiology
Animals ; Animals, Wild/classification ; Animals, Wild/physiology ; Bacterial Toxins/metabolism ; Behavior, Animal ; Biodiversity ; Databases, Nucleic Acid ; Diet ; Ecosystem ; Falkland Islands ; Feces/microbiology ; Host Microbial Interactions ; Israel ; Madagascar ; Metagenomics ; Peptide Hydrolases/genetics ; Peptide Hydrolases/metabolism ; Phylogeny ; Queensland ; Uganda
Czasopismo naukowe
Tytuł :
The Genome Copy Number of the Thermophilic Cyanobacterium Thermosynechococcus elongatus E542 Is Controlled by Growth Phase and Nutrient Availability.
Autorzy :
Riaz S; School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, China.
Xiao M; School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, China.
Chen P; School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, China.
Li M; School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, China.
Cui Y; School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, China.
Daroch M; School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, China .
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Źródło :
Applied and environmental microbiology [Appl Environ Microbiol] 2021 Apr 13; Vol. 87 (9). Date of Electronic Publication: 2021 Apr 13 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA Copy Number Variations*
Genome, Bacterial*
Bicarbonates/pharmacology ; Hot Temperature ; Phosphates/pharmacology ; Polyploidy ; Thermosynechococcus/drug effects ; Thermosynechococcus/genetics ; Thermosynechococcus/growth & development
SCR Organism :
Thermosynechococcus elongatus
Czasopismo naukowe
Tytuł :
Genome and Pangenome Analysis of Lactobacillus hilgardii FLUB-A New Strain Isolated from Mead.
Autorzy :
Gustaw K; Department of Biotechnology, Microbiology and Human Nutrition, Faculty of Food Science and Biotechnology, University of Life Sciences in Lublin, Skromna 8, 20-704 Lublin, Poland.
Koper P; Department of Genetics and Microbiology, Institute of Biological Sciences, Maria Curie-Skłodowska University, Akademicka 19, 20-033 Lublin, Poland.
Polak-Berecka M; Department of Biotechnology, Microbiology and Human Nutrition, Faculty of Food Science and Biotechnology, University of Life Sciences in Lublin, Skromna 8, 20-704 Lublin, Poland.
Rachwał K; Department of Biotechnology, Microbiology and Human Nutrition, Faculty of Food Science and Biotechnology, University of Life Sciences in Lublin, Skromna 8, 20-704 Lublin, Poland.
Skrzypczak K; Department of Fruits, Vegetables and Mushrooms Technology, Faculty of Food Science and Biotechnology, University of Life Sciences in Lublin, Skromna 8, 20-704 Lublin, Poland.
Waśko A; Department of Biotechnology, Microbiology and Human Nutrition, Faculty of Food Science and Biotechnology, University of Life Sciences in Lublin, Skromna 8, 20-704 Lublin, Poland.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2021 Apr 06; Vol. 22 (7). Date of Electronic Publication: 2021 Apr 06.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*
Phylogeny*
Honey/*microbiology
Lactobacillus/*genetics
Lactobacillus/isolation & purification ; Whole Genome Sequencing
SCR Organism :
Lactobacillus hilgardii
Czasopismo naukowe
Tytuł :
Streamlining CRISPR spacer-based bacterial host predictions to decipher the viral dark matter.
Autorzy :
Dion MB; Département de biochimie, de microbiologie et de bio-informatique, Faculté des sciences et de génie, Université Laval, Québec City, Québec G1V 0A6, Canada.; Groupe de recherche en écologie buccale, Faculté de médecine dentaire, Université Laval, Québec City, Québec G1V 0A6, Canada.
Plante PL; Centre de recherche en infectiologie de l'Université Laval, Axe maladies infectieuses et immunitaires, Centre de Recherche du CHU de Québec-Université Laval, Québec City, Québec G1V 4G2, Canada.; Centre de recherche en données massives, Université Laval, Québec City, Québec G1V 0A6, Canada.; Département de médecine moléculaire, Faculté de Médecine, Université Laval, Québec City, Québec G1V 0A6, Canada.
Zufferey E; Département de biochimie, de microbiologie et de bio-informatique, Faculté des sciences et de génie, Université Laval, Québec City, Québec G1V 0A6, Canada.; Groupe de recherche en écologie buccale, Faculté de médecine dentaire, Université Laval, Québec City, Québec G1V 0A6, Canada.
Shah SA; COPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Gentofte 2820, Denmark.
Corbeil J; Centre de recherche en infectiologie de l'Université Laval, Axe maladies infectieuses et immunitaires, Centre de Recherche du CHU de Québec-Université Laval, Québec City, Québec G1V 4G2, Canada.; Centre de recherche en données massives, Université Laval, Québec City, Québec G1V 0A6, Canada.; Département de médecine moléculaire, Faculté de Médecine, Université Laval, Québec City, Québec G1V 0A6, Canada.
Moineau S; Département de biochimie, de microbiologie et de bio-informatique, Faculté des sciences et de génie, Université Laval, Québec City, Québec G1V 0A6, Canada.; Groupe de recherche en écologie buccale, Faculté de médecine dentaire, Université Laval, Québec City, Québec G1V 0A6, Canada.; Félix d'Hérelle Reference Center for Bacterial Viruses, Université Laval, Québec City, Québec G1V 0A6, Canada.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Apr 06; Vol. 49 (6), pp. 3127-3138.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Bacteriophages*
Clustered Regularly Interspaced Short Palindromic Repeats*
Databases, Nucleic Acid*
Genome, Bacterial*
Metagenomics/*methods
Gastrointestinal Tract/microbiology ; Internet ; Software
Czasopismo naukowe
Tytuł :
Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis.
Autorzy :
Liu X; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Max-Planck-Ring 5, 72076 Tübingen, Germany.
Sutter JL; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Max-Planck-Ring 5, 72076 Tübingen, Germany.
de la Cuesta-Zuluaga J; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Max-Planck-Ring 5, 72076 Tübingen, Germany.
Waters JL; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Max-Planck-Ring 5, 72076 Tübingen, Germany.
Youngblut ND; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Max-Planck-Ring 5, 72076 Tübingen, Germany.
Ley RE; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Max-Planck-Ring 5, 72076 Tübingen, Germany.
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Źródło :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2021 Apr; Vol. 71 (4).
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*
Phylogeny*
Clostridiales/*classification
Bacterial Typing Techniques ; Gram-Positive Rods/classification
SCR Organism :
Catabacter hongkongensis
Czasopismo naukowe
Tytuł :
Draft Genome Analysis of Acinetobacter indicus Strain UBT1, an Efficient Lipase and Biosurfactant Producer.
Autorzy :
Patel RK; P. G. Department of Biosciences, Sardar Patel University, Sardar Patel Maidan, Vadtal Road, Satellite Campus, Bakrol, Gujarat, 388315, India.
Shah RK; P. G. Department of Biosciences, Sardar Patel University, Sardar Patel Maidan, Vadtal Road, Satellite Campus, Bakrol, Gujarat, 388315, India.; Texas A&M Agrilife Research and Extension Center, Texas A&M University System, Vernon, TX, USA.
Prajapati VS; Aspee Shakilam Biotechnology Institute, Navsari Agricultural University, Athwa Farm, Ghod Dod Road, Surat, Gujarat, 395007, India.
Patel KC; P. G. Department of Biosciences, Sardar Patel University, Sardar Patel Maidan, Vadtal Road, Satellite Campus, Bakrol, Gujarat, 388315, India.
Trivedi UB; P. G. Department of Biosciences, Sardar Patel University, Sardar Patel Maidan, Vadtal Road, Satellite Campus, Bakrol, Gujarat, 388315, India. .
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Źródło :
Current microbiology [Curr Microbiol] 2021 Apr; Vol. 78 (4), pp. 1238-1244. Date of Electronic Publication: 2021 Feb 25.
Typ publikacji :
Journal Article
MeSH Terms :
Acinetobacter*/genetics
Genome, Bacterial*/genetics
Lipase/genetics
SCR Organism :
Acinetobacter indicus
Czasopismo naukowe
Tytuł :
Marine Dadabacteria exhibit genome streamlining and phototrophy-driven niche partitioning.
Autorzy :
Graham ED; Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
Tully BJ; Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA. .; Center for Dark Energy Biosphere Investigations, University of Southern California, Los Angeles, CA, USA. .
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Źródło :
The ISME journal [ISME J] 2021 Apr; Vol. 15 (4), pp. 1248-1256. Date of Electronic Publication: 2020 Nov 23.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Genome, Bacterial*/genetics
Phototrophic Processes*
Bacteria/genetics ; Metagenomics ; Phylogeny
Czasopismo naukowe
Tytuł :
The Complete Genome Sequence of Xanthomonas theicola , the Causal Agent of Canker on Tea Plants, Reveals Novel Secretion Systems in Clade-1 Xanthomonads.
Autorzy :
Koebnik R; IRD, Cirad, Université Montpellier, IPME, Montpellier, France.
Burokiene D; Nature Research Centre, Institute of Botany, Laboratory of Plant Pathology, Akademijos g. 2, Vilnius, Lithuania.
Bragard C; Earth & Life Institute, Université Catholique Louvain-la-Neuve, Louvain-la-Neuve, Belgium.
Chang C; Pacific Biosciences, Menlo Park, CA 94025, U.S.A.
Saux MF; IRHS-UMR 1345, Université d'Angers, INRAE, Institut Agro, SFR 4207 QuaSaV, 49071, CIRM-CFBP, Beaucouzé, France.
Kölliker R; Molecular Plant Breeding, Institute of Agricultural Sciences, ETH Zürich, Universitätstrasse 2, 8092 Zürich, Switzerland.
Lang JM; Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, U.S.A.
Leach JE; Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, U.S.A.
Luna EK; Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, U.S.A.
Portier P; IRHS-UMR 1345, Université d'Angers, INRAE, Institut Agro, SFR 4207 QuaSaV, 49071, CIRM-CFBP, Beaucouzé, France.
Sagia A; IRD, Cirad, Université Montpellier, IPME, Montpellier, France.; Department of Biology, University of Crete, Heraklion, Greece.
Ziegle J; Pacific Biosciences, Menlo Park, CA 94025, U.S.A.
Cohen SP; Department of Plant Pathology, The Ohio State University, Columbus, OH 43210, U.S.A.
Jacobs JM; Department of Plant Pathology, The Ohio State University, Columbus, OH 43210, U.S.A.; Infectious Disease Institute, The Ohio State University, Columbus, OH 43210, U.S.A.
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Źródło :
Phytopathology [Phytopathology] 2021 Apr; Vol. 111 (4), pp. 611-616. Date of Electronic Publication: 2021 Feb 26.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*/genetics
Xanthomonas*/genetics
Phylogeny ; Plant Diseases ; Tea
SCR Organism :
Xanthomonas theicola
Czasopismo naukowe
Tytuł :
Efficient genome editing for Pseudomonas aeruginosa using CRISPR-Cas12a.
Autorzy :
Lin Z; School of Biology and Biological Engineering, South China University of Technology, Guangzhou, Guangdong 510006, China. Electronic address: .
Li H; School of Biology and Biological Engineering, South China University of Technology, Guangzhou, Guangdong 510006, China.
He L; School of Biology and Biological Engineering, South China University of Technology, Guangzhou, Guangdong 510006, China.
Jing Y; School of Biology and Biological Engineering, South China University of Technology, Guangzhou, Guangdong 510006, China.
Pistolozzi M; School of Biology and Biological Engineering, South China University of Technology, Guangzhou, Guangdong 510006, China.
Wang T; School of Biology and Biological Engineering, South China University of Technology, Guangzhou, Guangdong 510006, China. Electronic address: .
Ye Y; School of Biology and Biological Engineering, South China University of Technology, Guangzhou, Guangdong 510006, China. Electronic address: .
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Źródło :
Gene [Gene] 2021 Jul 20; Vol. 790, pp. 145693. Date of Electronic Publication: 2021 May 04.
Typ publikacji :
Journal Article
MeSH Terms :
CRISPR-Cas Systems*
Gene Editing*
Genome, Bacterial*
Bacterial Proteins/*antagonists & inhibitors
Pseudomonas aeruginosa/*genetics
Bacterial Proteins/genetics ; Plasmids ; Pseudomonas aeruginosa/growth & development ; Pseudomonas aeruginosa/metabolism
Czasopismo naukowe
Tytuł :
Locus of Heat Resistance (LHR) in Meat-Borne Escherichia coli: Screening and Genetic Characterization.
Autorzy :
Guragain M; U.S. Department of Agriculture, Agricultural Research Service, Roman L. Hruska U.S. Meat Animal Research Center, Clay Center, Nebraska, USA.
Brichta-Harhay DM; U.S. Department of Agriculture, Agricultural Research Service, Roman L. Hruska U.S. Meat Animal Research Center, Clay Center, Nebraska, USA.
Bono JL; U.S. Department of Agriculture, Agricultural Research Service, Roman L. Hruska U.S. Meat Animal Research Center, Clay Center, Nebraska, USA.
Bosilevac JM; U.S. Department of Agriculture, Agricultural Research Service, Roman L. Hruska U.S. Meat Animal Research Center, Clay Center, Nebraska, USA .
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Źródło :
Applied and environmental microbiology [Appl Environ Microbiol] 2021 Mar 11; Vol. 87 (7). Date of Electronic Publication: 2021 Mar 11 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Escherichia coli/*physiology
Meat/*microbiology
Escherichia coli/genetics ; Hot Temperature ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences.
Autorzy :
Green AG; Department of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA.
Elhabashy H; Biomolecular Interactions, Max Planck Institute for Developmental Biology, 72076, Tübingen, Germany.; Institute for Bioinformatics and Medical Informatics, University of Tübingen, Sand 14, 72076, Tübingen, Germany.; Department of Computer Science, University of Tübingen, WSI/ZBIT, Sand 14, 72076, Tübingen, Germany.
Brock KP; Department of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA.
Maddamsetti R; Department of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA.
Kohlbacher O; Biomolecular Interactions, Max Planck Institute for Developmental Biology, 72076, Tübingen, Germany. .; Institute for Bioinformatics and Medical Informatics, University of Tübingen, Sand 14, 72076, Tübingen, Germany. .; Department of Computer Science, University of Tübingen, WSI/ZBIT, Sand 14, 72076, Tübingen, Germany. .; Quantitative Biology Center, University of Tübingen, Auf der Morgenstelle 8, 72076, Tübingen, Germany. .; Institute for Translational Bioinformatics, University Hospital Tübingen, Sand 14, 72076, Tübingen, Germany. .
Marks DS; Institute for Bioinformatics and Medical Informatics, University of Tübingen, Sand 14, 72076, Tübingen, Germany. .; Broad Institute of Harvard and MIT, Cambridge, MA, 02142, USA. .
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Źródło :
Nature communications [Nat Commun] 2021 Mar 02; Vol. 12 (1), pp. 1396. Date of Electronic Publication: 2021 Mar 02.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Evolution, Molecular*
Genome, Bacterial*
Protein Interaction Mapping*
Amino Acids/*genetics
Bacterial Proteins/*genetics
Bacterial Proteins/*metabolism
Bacterial Proteins/chemistry ; Base Sequence ; Escherichia coli/genetics ; Eukaryotic Cells/metabolism ; Membrane Proteins/metabolism ; Molecular Docking Simulation ; Protein Binding ; Proteome/metabolism
Czasopismo naukowe
Tytuł :
Genomic characterization of multidrug-resistant ESBL-producing Escherichia coli ST58 causing fatal colibacillosis in critically endangered Brazilian merganser (Mergus octosetaceus).
Autorzy :
Fuentes-Castillo D; Department of Pathology, School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, Brazil.; One Health Brazilian Resistance Project (OneBR), São Paulo, Brazil.
Navas-Suárez PE; Department of Pathology, School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, Brazil.
Gondim MF; Zooparque Itatiba, Itatiba, Brazil.
Esposito F; One Health Brazilian Resistance Project (OneBR), São Paulo, Brazil.; Department of Clinical Analysis, Faculty of Pharmacy, University of São Paulo, São Paulo, Brazil.
Sacristán C; Department of Pathology, School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, Brazil.
Fontana H; One Health Brazilian Resistance Project (OneBR), São Paulo, Brazil.; Department of Clinical Analysis, Faculty of Pharmacy, University of São Paulo, São Paulo, Brazil.
Fuga B; One Health Brazilian Resistance Project (OneBR), São Paulo, Brazil.; Department of Clinical Analysis, Faculty of Pharmacy, University of São Paulo, São Paulo, Brazil.; Department of Microbiology, Instituto de Ciências Biomédicas, University of São Paulo, São Paulo, Brazil.
Piovani C; Zooparque Itatiba, Itatiba, Brazil.
Kooij R; Zooparque Itatiba, Itatiba, Brazil.
Lincopan N; One Health Brazilian Resistance Project (OneBR), São Paulo, Brazil.; Department of Clinical Analysis, Faculty of Pharmacy, University of São Paulo, São Paulo, Brazil.; Department of Microbiology, Instituto de Ciências Biomédicas, University of São Paulo, São Paulo, Brazil.
Catão-Dias JL; Department of Pathology, School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, Brazil.
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Źródło :
Transboundary and emerging diseases [Transbound Emerg Dis] 2021 Mar; Vol. 68 (2), pp. 258-266. Date of Electronic Publication: 2020 Jul 02.
Typ publikacji :
Journal Article
MeSH Terms :
Ducks*
Genome, Bacterial*
Bird Diseases/*microbiology
Drug Resistance, Multiple, Viral/*genetics
Escherichia coli/*genetics
Escherichia coli Infections/*veterinary
Animals ; Animals, Wild ; Brazil ; Escherichia coli/drug effects ; Escherichia coli Infections/microbiology ; beta-Lactamases/metabolism
Czasopismo naukowe

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