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Wyszukujesz frazę ""Genome Bacterial"" wg kryterium: Temat


Tytuł:
Unraveling the genome of Bacillus velezensis MEP 2 18, a strain producing fengycin homologs with broad antibacterial activity: comprehensive comparative genome analysis.
Autorzy:
Medeot D; Instituto de Biotecnología Ambiental y Salud (INBIAS), CCT-CONICET-Córdoba, Universidad Nacional de Río Cuarto, 5800, Córdoba, Argentina.
Sannazzaro A; Instituto Tecnológico de Chascomús (INTECH), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Universidad Nacional de San Martín (UNSAM), 7130, Chascomús, Argentina.
Estrella MJ; Instituto Tecnológico de Chascomús (INTECH), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Universidad Nacional de San Martín (UNSAM), 7130, Chascomús, Argentina.
Torres Tejerizo G; Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, IBBM (Instituto de Biotecnología y Biología Molecular), CCT-CONICET-La Plata, Universidad Nacional de La Plata, 1900, La Plata, Argentina.
Contreras-Moreira B; Estación Experimental de Aula Dei-CSIC, 50059, Zaragoza, Spain.
Pistorio M; Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, IBBM (Instituto de Biotecnología y Biología Molecular), CCT-CONICET-La Plata, Universidad Nacional de La Plata, 1900, La Plata, Argentina.
Jofré E; Instituto de Biotecnología Ambiental y Salud (INBIAS), CCT-CONICET-Córdoba, Universidad Nacional de Río Cuarto, 5800, Córdoba, Argentina. .
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Źródło:
Scientific reports [Sci Rep] 2023 Dec 13; Vol. 13 (1), pp. 22168. Date of Electronic Publication: 2023 Dec 13.
Typ publikacji:
Journal Article
MeSH Terms:
Genome, Bacterial*
Bacillus*/genetics
Bacillus*/metabolism
Phylogeny ; Lipopeptides/chemistry ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/metabolism
SCR Organism:
Bacillus velezensis
Czasopismo naukowe
Tytuł:
Genome mining reveals novel biosynthetic gene clusters in entomopathogenic bacteria.
Autorzy:
Meesil W; Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand.
Muangpat P; Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand.
Sitthisak S; Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand.; Centre of Excellence in Medical Biotechnology (CEMB), Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand.
Rattanarojpong T; Department of Microbiology, Faculty of Science, King Mongkut's University of Technology Thonburi (KMUTT), Bangkok, 10400, Thailand.
Chantratita N; Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, 10400, Thailand.
Machado RAR; Experimental Biology Research Group, Institute of Biology, University of Neuchâtel, Rue Emile-Argand 11, 2000, Neuchâtel, Switzerland.
Shi YM; Department of Natural Products in Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, 35043, Marburg, Germany.; Molecular Biotechnology, Department of Biosciences, Goethe University, Frankfurt, 60438, Frankfurt am Main, Germany.; CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China.
Bode HB; Department of Natural Products in Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, 35043, Marburg, Germany.; Molecular Biotechnology, Department of Biosciences, Goethe University, Frankfurt, 60438, Frankfurt am Main, Germany.; Chemical Biology, Department of Chemistry, Philipps University Marburg, 35032, Marburg, Germany.; Senckenberg Gesellschaft für Naturforschung, Frankfurt am Main, Germany.; SYNMIKRO (Zentrum für Synthetische Mikrobiologie), 35032, Marburg, Germany.
Vitta A; Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand.; Centre of Excellence in Medical Biotechnology (CEMB), Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand.; Center of Excellence for Biodiversity, Faculty of Sciences, Naresuan University, Phitsanulok, 65000, Thailand.
Thanwisai A; Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand. .; Centre of Excellence in Medical Biotechnology (CEMB), Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand. .; Center of Excellence for Biodiversity, Faculty of Sciences, Naresuan University, Phitsanulok, 65000, Thailand. .
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Źródło:
Scientific reports [Sci Rep] 2023 Nov 25; Vol. 13 (1), pp. 20764. Date of Electronic Publication: 2023 Nov 25.
Typ publikacji:
Journal Article
MeSH Terms:
Genome, Bacterial*
Bacteria*/genetics
Computational Biology ; Multigene Family ; Biosynthetic Pathways/genetics
Czasopismo naukowe
Tytuł:
Subspecies-level genome comparison of Lactobacillus delbrueckii.
Autorzy:
Baek MG; Interdisciplinary Program in Precision Public Health, Korea University, Seoul, Korea.; Department of Public Health Sciences, Korea University, Seoul, Korea.
Kim KW; Interdisciplinary Program in Precision Public Health, Korea University, Seoul, Korea.; Department of Public Health Sciences, Korea University, Seoul, Korea.
Yi H; Interdisciplinary Program in Precision Public Health, Korea University, Seoul, Korea. .; School of Biosystems and Biomedical Sciences, Korea University, Seoul, Korea. .
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Źródło:
Scientific reports [Sci Rep] 2023 Feb 23; Vol. 13 (1), pp. 3171. Date of Electronic Publication: 2023 Feb 23.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Lactobacillus delbrueckii*/classification
Lactobacillus delbrueckii*/genetics
Genome, Bacterial*
Gene Transfer, Horizontal ; Biological Evolution
Czasopismo naukowe
Tytuł:
A revisit to universal single-copy genes in bacterial genomes.
Autorzy:
Wang S; Department of Computer Science, University of Central Florida, Orlando, FL, USA.
Ventolero M; Burnett School of Biomedical Science, College of Medicine, University of Central Florida, Orlando, FL, USA.
Hu H; Department of Computer Science, University of Central Florida, Orlando, FL, USA. .; Genomics and Bioinformatics Cluster, University of Central Florida, Orlando, FL, USA. .
Li X; Burnett School of Biomedical Science, College of Medicine, University of Central Florida, Orlando, FL, USA. .
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Źródło:
Scientific reports [Sci Rep] 2022 Aug 25; Vol. 12 (1), pp. 14550. Date of Electronic Publication: 2022 Aug 25.
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Biological Evolution*
Genome, Bacterial*
Bacteria/genetics ; Genes, Bacterial ; Metagenomics ; Phylogeny
Czasopismo naukowe
Tytuł:
Phenotypic characterization and analysis of complete genomes of two distinct strains of the proposed species "L. swaminathanii".
Autorzy:
Hudson LK; Department of Food Science, University of Tennessee, Knoxville, TN, 37996, USA.
Chaggar HK; Department of Food Science, University of Tennessee, Knoxville, TN, 37996, USA.
Schamp CN; Department of Food Science, University of Tennessee, Knoxville, TN, 37996, USA.
Claxton ML; Department of Food Science, University of Tennessee, Knoxville, TN, 37996, USA.
Bryan DW; Department of Food Science, University of Tennessee, Knoxville, TN, 37996, USA.
Peters TL; Department of Food Science, University of Tennessee, Knoxville, TN, 37996, USA.
Song Y; Department of Food Science, University of Tennessee, Knoxville, TN, 37996, USA.
Carlin CR; Department of Food Science, Cornell University, Ithaca, NY, 14853, USA.
den Bakker HC; Center for Food Safety, University of Georgia, Griffin, GA, 30223, USA.
Denes TG; Department of Food Science, University of Tennessee, Knoxville, TN, 37996, USA. .
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Źródło:
Scientific reports [Sci Rep] 2022 Jun 01; Vol. 12 (1), pp. 9137. Date of Electronic Publication: 2022 Jun 01.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome, Bacterial*
Listeria*/genetics
Genomics/methods ; High-Throughput Nucleotide Sequencing ; Phenotype ; Sequence Analysis, DNA/methods
Czasopismo naukowe
Tytuł:
Outbreak report of polymyxin-carbapenem-resistant Klebsiella pneumoniae causing untreatable infections evidenced by synergy tests and bacterial genomes.
Autorzy:
Gomes MZR; Laboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil. .; Hospital Federal Servidores do Estado, Ministry of Health, Rio de Janeiro, Brazil. .; Laboratório de Pesquisa em Infecção Hospitalar, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, RJ, Brazil. .; Hospital Infection Control Committee, Hospital Universitário Pedro Ernesto, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil. .
de Lima EM; Hospital Federal Servidores do Estado, Ministry of Health, Rio de Janeiro, Brazil.
Martins Aires CA; Laboratório de Pesquisa em Infecção Hospitalar, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, RJ, Brazil.; Departamento de Ciência da Saúde, Universidade Federal Rural do Semi-Árido (UFERSA), Mossoró, Rio Grande do Norte, Brazil.
Pereira PS; Laboratório de Pesquisa em Infecção Hospitalar, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, RJ, Brazil.
Yim J; Anti-Infective Research Laboratory, Eugene Applebaum College of Pharmacy and Health Sciences, Department of Medicine, Division of Infectious Diseases, School of Medicine, Wayne State University, Detroit, MI, USA.
Silva FH; Laboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.
Rodrigues CAS; Hospital Federal Servidores do Estado, Ministry of Health, Rio de Janeiro, Brazil.
Oliveira TRTE; Laboratório de Pesquisa em Infecção Hospitalar, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, RJ, Brazil.
da Silva PP; Laboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.
Eller CM; Laboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.
de Souza CMR; Laboratório de Pesquisa em Infecção Hospitalar, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, RJ, Brazil.
Rybak MJ; Anti-Infective Research Laboratory, Eugene Applebaum College of Pharmacy and Health Sciences, Department of Medicine, Division of Infectious Diseases, School of Medicine, Wayne State University, Detroit, MI, USA.
Albano RM; Departamento de Bioquímica, IBRAG, Universidade do Estado do Rio de Janeiro,, Rio de Janeiro, Brazil.
de Miranda AB; Laboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.
Machado E; Laboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.; Laboratório de Biologia Molecular Aplicada a Micobactérias, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.
Catanho M; Laboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil. .
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Corporate Authors:
Nucleus of Hospital Research (NPH) study collaborators
Źródło:
Scientific reports [Sci Rep] 2023 Apr 17; Vol. 13 (1), pp. 6238. Date of Electronic Publication: 2023 Apr 17.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Polymyxins*/pharmacology
Polymyxins*/therapeutic use
Klebsiella Infections*/drug therapy
Klebsiella Infections*/epidemiology
Klebsiella Infections*/genetics
Humans ; Klebsiella pneumoniae ; Brazil ; Genome, Bacterial ; Disease Outbreaks ; Carbapenems/therapeutic use ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/therapeutic use ; Microbial Sensitivity Tests ; beta-Lactamases/genetics ; Bacterial Proteins/genetics
Czasopismo naukowe
Tytuł:
Comparative pangenome analysis of capsulated Haemophilus influenzae serotype f highlights their high genomic stability.
Autorzy:
Gonzalez-Diaz A; Microbiology Department, Hospital Universitari de Bellvitge, IDIBELL-UB, Feixa Llarga s/n, L'Hospitalet de Llobregat, 08907, Barcelona, Spain.; Research Network for Respiratory Diseases (CIBERES), ISCIII, Madrid, Spain.
Carrera-Salinas A; Microbiology Department, Hospital Universitari de Bellvitge, IDIBELL-UB, Feixa Llarga s/n, L'Hospitalet de Llobregat, 08907, Barcelona, Spain.
Pinto M; Bioinformatics Unit, Department of Infectious Disease, National Institute of Health, Lisbon, Portugal.
Cubero M; Microbiology Department, Hospital Universitari de Bellvitge, IDIBELL-UB, Feixa Llarga s/n, L'Hospitalet de Llobregat, 08907, Barcelona, Spain.; Research Network for Respiratory Diseases (CIBERES), ISCIII, Madrid, Spain.
van der Ende A; Infection and Immunity Amsterdam, Department of Medical Microbiology and Infection Prevention, Amsterdam UMC, Amsterdam, The Netherlands.; Amsterdam UMC, Reference Laboratory for Bacterial Meningitis, Amsterdam, The Netherlands.
Langereis JD; Section Pediatric Infectious Diseases, Laboratory of Medical Immunology, Radboud Institute for Molecular Life Sciences, Radboudumc, Nijmegen, The Netherlands.; Radboud Center for Infectious Diseases, Radboudumc, Nijmegen, The Netherlands.
Domínguez MÁ; Microbiology Department, Hospital Universitari de Bellvitge, IDIBELL-UB, Feixa Llarga s/n, L'Hospitalet de Llobregat, 08907, Barcelona, Spain.; Department of Pathology and Experimental Therapeutics, School of Medicine, University of Barcelona, Barcelona, Spain.; Research Network for Infectious Diseases (CIBERINFEC), ISCIII, Madrid, Spain.
Ardanuy C; Microbiology Department, Hospital Universitari de Bellvitge, IDIBELL-UB, Feixa Llarga s/n, L'Hospitalet de Llobregat, 08907, Barcelona, Spain.; Research Network for Respiratory Diseases (CIBERES), ISCIII, Madrid, Spain.; Department of Pathology and Experimental Therapeutics, School of Medicine, University of Barcelona, Barcelona, Spain.
Bajanca-Lavado P; Haemophilus Influenzae Reference Laboratory, Department of Infectious Disease, National Institute of Health, Lisbon, Portugal.
Marti S; Microbiology Department, Hospital Universitari de Bellvitge, IDIBELL-UB, Feixa Llarga s/n, L'Hospitalet de Llobregat, 08907, Barcelona, Spain. .; Research Network for Respiratory Diseases (CIBERES), ISCIII, Madrid, Spain. .; Department of Medicine, School of Medicine, University of Barcelona, Barcelona, Spain. .
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Źródło:
Scientific reports [Sci Rep] 2022 Feb 24; Vol. 12 (1), pp. 3189. Date of Electronic Publication: 2022 Feb 24.
Typ publikacji:
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome, Bacterial*
Genomic Instability*
Bacterial Capsules/*genetics
Haemophilus influenzae/*genetics
Genomics ; Haemophilus Infections/microbiology ; Haemophilus influenzae/classification ; Humans ; Multilocus Sequence Typing ; Netherlands ; Phylogeny ; Polymorphism, Single Nucleotide ; Portugal ; Serogroup ; Serotyping/methods ; Spain
Czasopismo naukowe
Tytuł:
Complete de novo assembly of Wolbachia endosymbiont of Diaphorina citri Kuwayama (Hemiptera: Liviidae) using long-read genome sequencing.
Autorzy:
Neupane S; Entomology and Nematology Department, Citrus Research and Education Center/IFAS, University of Florida, Lake Alfred, Florida, 33850, USA.
Bonilla SI; Entomology and Nematology Department, Citrus Research and Education Center/IFAS, University of Florida, Lake Alfred, Florida, 33850, USA.
Manalo AM; Entomology and Nematology Department, Citrus Research and Education Center/IFAS, University of Florida, Lake Alfred, Florida, 33850, USA.
Pelz-Stelinski KS; Entomology and Nematology Department, Citrus Research and Education Center/IFAS, University of Florida, Lake Alfred, Florida, 33850, USA. .
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Źródło:
Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 125. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji:
Comparative Study; Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Chromosomes, Bacterial*
Genes, Bacterial*
Genome, Bacterial*
Whole Genome Sequencing*
DNA, Bacterial/*genetics
DNA, Circular/*genetics
Hemiptera/*microbiology
Wolbachia/*genetics
Animals ; Cell Line ; Phylogeny ; Sequence Analysis, DNA ; Symbiosis
Czasopismo naukowe
Tytuł:
Genome analysis provides insight into hyper-virulence of Streptococcus suis LSM178, a human strain with a novel sequence type 1005.
Autorzy:
Hu Y; Key Laboratory of Fermentation Engineering (Ministry of Education), Hubei Key Laboratory of Industrial Microbiology, National '111' Center for Cellular Regulation and Molecular Pharmaceutics, Hubei Research Center of Food Fermentation Engineering and Technology, Hubei University of Technology, Wuhan, 430068, Hubei, People's Republic of China.
Fu S; Key Laboratory of Fermentation Engineering (Ministry of Education), Hubei Key Laboratory of Industrial Microbiology, National '111' Center for Cellular Regulation and Molecular Pharmaceutics, Hubei Research Center of Food Fermentation Engineering and Technology, Hubei University of Technology, Wuhan, 430068, Hubei, People's Republic of China.
Zou G; Key Laboratory of Environment Correlative Dietology, College of Food Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China.
Kerdsin A; Faculty of Public Health, Kasetsart University Chalermphrakiat Sakon Nakhon Province Campus, Sakon Nakhon, 47000, Thailand.
Chen X; Institute of Animal Husbandry and Veterinary Science, Wuhan Academy of Agricultural Sciences, Wuhan, 430208, Hubei, People's Republic of China.
Dong X; Key Laboratory of Environment Correlative Dietology, College of Food Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China.
Teng L; Key Laboratory of Environment Correlative Dietology, College of Food Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China.
Li J; Key Laboratory of Environment Correlative Dietology, College of Food Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China. .
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Źródło:
Scientific reports [Sci Rep] 2021 Dec 14; Vol. 11 (1), pp. 23919. Date of Electronic Publication: 2021 Dec 14.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome, Bacterial*
Genomic Islands*
Phylogeny*
Streptococcal Infections*/genetics
Streptococcal Infections*/metabolism
Streptococcus suis*/genetics
Streptococcus suis*/isolation & purification
Streptococcus suis*/metabolism
Streptococcus suis*/pathogenicity
Virulence Factors*/biosynthesis
Virulence Factors*/genetics
Animals ; Humans ; Sequence Analysis, DNA ; Swine
Czasopismo naukowe
Tytuł:
High prevalence of multiple antibiotic resistance in clinical E. coli isolates from Bangladesh and prediction of molecular resistance determinants using WGS of an XDR isolate.
Autorzy:
Jain P; Department of Pharmaceutical Sciences, North South University, Dhaka, Bangladesh.
Bepari AK; Department of Pharmaceutical Sciences, North South University, Dhaka, Bangladesh.
Sen PK; Department of Pharmaceutical Sciences, North South University, Dhaka, Bangladesh.
Rafe T; Department of Pharmaceutical Sciences, North South University, Dhaka, Bangladesh.
Imtiaz R; Department of Pharmaceutical Sciences, North South University, Dhaka, Bangladesh.
Hossain M; NSU Genome Research Institute (NGRI), North South University, Dhaka, Bangladesh.; Department of Biochemistry and Microbiology, North South University, Dhaka, Bangladesh.
Reza HM; Department of Pharmaceutical Sciences, North South University, Dhaka, Bangladesh. .
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Źródło:
Scientific reports [Sci Rep] 2021 Nov 24; Vol. 11 (1), pp. 22859. Date of Electronic Publication: 2021 Nov 24.
Typ publikacji:
Journal Article
MeSH Terms:
Genome, Bacterial*
Whole Genome Sequencing*
Drug Resistance, Multiple, Bacterial/*genetics
Escherichia coli/*genetics
Escherichia coli Infections/*microbiology
Escherichia coli Proteins/*genetics
Anti-Bacterial Agents/therapeutic use ; Bacterial Proteins/genetics ; Bangladesh/epidemiology ; Escherichia coli/drug effects ; Escherichia coli/isolation & purification ; Escherichia coli Infections/diagnosis ; Escherichia coli Infections/drug therapy ; Escherichia coli Infections/epidemiology ; Humans ; Microbial Sensitivity Tests ; Molecular Epidemiology ; Prevalence ; Virulence Factors/genetics ; beta-Lactamases/genetics
Czasopismo naukowe
Tytuł:
Genome-informed loop-mediated isothermal amplification assay for specific detection of Pectobacterium parmentieri in infected potato tissues and soil.
Autorzy:
Domingo R; Department of Tropical Plant and Soil Sciences, University of Hawaii at Manoa, Honolulu, HI, USA.
Perez C; Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI, USA.
Klair D; Department of Plant and Environmental Protection Sciences, University of Hawaii at Manoa, Honolulu, HI, USA.
Vu H; Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI, USA.
Candelario-Tochiki A; Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI, USA.
Wang X; Department of Plant and Environmental Protection Sciences, University of Hawaii at Manoa, Honolulu, HI, USA.
Camson A; Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI, USA.
Uy JN; Department of Tropical Plant and Soil Sciences, University of Hawaii at Manoa, Honolulu, HI, USA.
Salameh M; Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI, USA.
Arizala D; Department of Plant and Environmental Protection Sciences, University of Hawaii at Manoa, Honolulu, HI, USA.
Dobhal S; Department of Plant and Environmental Protection Sciences, University of Hawaii at Manoa, Honolulu, HI, USA.
Boluk G; Department of Plant and Environmental Protection Sciences, University of Hawaii at Manoa, Honolulu, HI, USA.
Bingham JP; Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI, USA.
Ochoa-Corona F; Department of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK, USA.
Ali ME; Department of Plant Pathology, University of Georgia, Tifton, GA, USA.
Stack JP; Department of Plant Pathology, Kansas State University, Manhattan, KS, USA.
Fletcher J; Department of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK, USA.
Odani J; Department of Human Nutrition, Food and Animal Sciences, University of Hawaii at Manoa, Honolulu, HI, USA.
Jenkins D; Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI, USA.
Alvarez AM; Department of Plant and Environmental Protection Sciences, University of Hawaii at Manoa, Honolulu, HI, USA.
Arif M; Department of Plant and Environmental Protection Sciences, University of Hawaii at Manoa, Honolulu, HI, USA. .
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Źródło:
Scientific reports [Sci Rep] 2021 Nov 09; Vol. 11 (1), pp. 21948. Date of Electronic Publication: 2021 Nov 09.
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Genome, Bacterial*
Soil Microbiology*
Molecular Diagnostic Techniques/*methods
Nucleic Acid Amplification Techniques/*methods
Pectobacterium/*isolation & purification
Solanum tuberosum/*microbiology
Computer Simulation ; DNA, Bacterial/genetics ; Limit of Detection ; Pectobacterium/genetics ; Reproducibility of Results
SCR Protocol:
LAMP assay
Czasopismo naukowe
Tytuł:
Distribution of bacteriocin genes in the lineages of Lactiplantibacillus plantarum.
Autorzy:
Choi S; Interdisciplinary Program in Precision Public Health, Korea University, Seoul, Republic of Korea.
Baek MG; Interdisciplinary Program in Precision Public Health, Korea University, Seoul, Republic of Korea.; Department of Public Health Sciences, Graduate School, Korea University, Seoul, Republic of Korea.
Chung MJ; R&D Center, Cell Biotech Co. Ltd., Gimpo, Republic of Korea.
Lim S; R&D Center, Cell Biotech Co. Ltd., Gimpo, Republic of Korea.
Yi H; Interdisciplinary Program in Precision Public Health, Korea University, Seoul, Republic of Korea. .; Department of Public Health Sciences, Graduate School, Korea University, Seoul, Republic of Korea. .; School of Biosystems and Biomedical Sciences, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul, 02841, Republic of Korea. .
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Źródło:
Scientific reports [Sci Rep] 2021 Oct 08; Vol. 11 (1), pp. 20063. Date of Electronic Publication: 2021 Oct 08.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Evolution, Molecular*
Gene Expression Regulation, Bacterial*
Genes, Bacterial*
Genetic Variation*
Genome, Bacterial*
Bacteriocins/*genetics
Lactobacillus plantarum/*genetics
Bacteriocins/metabolism ; Lactobacillus plantarum/classification ; Lactobacillus plantarum/metabolism ; Phylogeny
Czasopismo naukowe
Tytuł:
Systematic analysis of prophage elements in actinobacterial genomes reveals a remarkable phylogenetic diversity.
Autorzy:
Sharma V; Institute of Bio- and Geosciences (IBG-1) Biotechnology, Forschungszentrum Jülich, 52425, Jülich, Germany. .
Hünnefeld M; Institute of Bio- and Geosciences (IBG-1) Biotechnology, Forschungszentrum Jülich, 52425, Jülich, Germany.
Luthe T; Institute of Bio- and Geosciences (IBG-1) Biotechnology, Forschungszentrum Jülich, 52425, Jülich, Germany.
Frunzke J; Institute of Bio- and Geosciences (IBG-1) Biotechnology, Forschungszentrum Jülich, 52425, Jülich, Germany. .
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Źródło:
Scientific reports [Sci Rep] 2023 Mar 17; Vol. 13 (1), pp. 4410. Date of Electronic Publication: 2023 Mar 17.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Prophages*/genetics
Bacteriophages*/genetics
Phylogeny ; Genome, Bacterial
Czasopismo naukowe
Tytuł:
Connecting genomic islands across prokaryotic and phage genomes via protein families.
Autorzy:
Aldaihani R; Department of Computer Science, Kuwait University, Kuwait City, State of Kuwait. .; Department of Computer Science, Virginia Tech, Blacksburg, VA, USA. .
Heath LS; Department of Computer Science, Virginia Tech, Blacksburg, VA, USA.
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Źródło:
Scientific reports [Sci Rep] 2023 Jan 07; Vol. 13 (1), pp. 344. Date of Electronic Publication: 2023 Jan 07.
Typ publikacji:
Journal Article
MeSH Terms:
Genomic Islands*/genetics
Bacteriophages*/genetics
Prokaryotic Cells ; Proteins/genetics ; Bacteria/genetics ; Computational Biology/methods ; Gene Transfer, Horizontal ; Genome, Bacterial
Czasopismo naukowe
Tytuł:
Evaluation of probiotic characteristics and whole genome analysis of Pediococcus pentosaceus MR001 for use as probiotic bacteria in shrimp aquaculture.
Autorzy:
Wanna W; Division of Biological Science, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90110, Thailand. .; Center for Genomics and Bioinformatics Research, Faculty of Science, Prince of Songkla University, Songkhla, 90110, Thailand. .
Surachat K; Division of Computational Science, Faculty of Science, Prince of Songkla University, Songkhla, 90110, Thailand.; Molecular Evolution and Computational Biology Research Unit, Faculty of Science, Prince of Songkla University, Hat Yai, 90110, Songkhla, Thailand.
Kaitimonchai P; Division of Biological Science, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90110, Thailand.
Phongdara A; Center for Genomics and Bioinformatics Research, Faculty of Science, Prince of Songkla University, Songkhla, 90110, Thailand.; Faculty of Medical Technology, Prince of Songkla University, Songkhla, 90110, Thailand.
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Źródło:
Scientific reports [Sci Rep] 2021 Sep 15; Vol. 11 (1), pp. 18334. Date of Electronic Publication: 2021 Sep 15.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome, Bacterial*
Probiotics*
Aquaculture/*methods
Pandalidae/*microbiology
Pediococcus pentosaceus/*genetics
Animals ; Pandalidae/growth & development ; Pediococcus pentosaceus/pathogenicity
Czasopismo naukowe
Tytuł:
A structural property for reduction of biochemical networks.
Autorzy:
Küken A; Bioinformatics, Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany.
Wendering P; Bioinformatics, Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany.
Langary D; Systems Biology and Mathematical Modeling, Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany.
Nikoloski Z; Bioinformatics, Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany. .; Systems Biology and Mathematical Modeling, Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany. .
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Źródło:
Scientific reports [Sci Rep] 2021 Aug 31; Vol. 11 (1), pp. 17415. Date of Electronic Publication: 2021 Aug 31.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome, Bacterial*
Metabolic Networks and Pathways*
Models, Biological*
Escherichia coli/*metabolism
Escherichia coli/genetics ; Escherichia coli/growth & development ; Kinetics
Czasopismo naukowe
Tytuł:
Comparative genome analysis of Bacillus thuringiensis strain HD521 and HS18-1.
Autorzy:
Sun H; College of Agronomy, Sichuan Agricultural University, Wenjiang, 611130, China.; Wenshan Academy of Agricultural Sciences, Wenshan, 663000, China.
Xiang X; College of Agronomy, Sichuan Agricultural University, Wenjiang, 611130, China.
Li Q; College of Agronomy, Sichuan Agricultural University, Wenjiang, 611130, China.
Lin H; College of Agronomy, Sichuan Agricultural University, Wenjiang, 611130, China.
Wang X; College of Agronomy, Sichuan Agricultural University, Wenjiang, 611130, China.
Sun J; College of Agronomy, Shihezi University, Shihezi, 832003, China.
Luo L; Wenshan Academy of Agricultural Sciences, Wenshan, 663000, China. .
Zheng A; College of Agronomy, Sichuan Agricultural University, Wenjiang, 611130, China. .
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Źródło:
Scientific reports [Sci Rep] 2021 Aug 16; Vol. 11 (1), pp. 16590. Date of Electronic Publication: 2021 Aug 16.
Typ publikacji:
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome, Bacterial*
Bacillus thuringiensis/*genetics
Bacillus Phages/genetics ; Bacillus thuringiensis/pathogenicity ; Bacillus thuringiensis/physiology ; Bacillus thuringiensis/virology ; Chromosomes, Bacterial/genetics ; DNA, Bacterial/genetics ; Genomics ; Humans ; Lysogeny ; Molecular Sequence Annotation ; Mutagenesis, Insertional ; Open Reading Frames/genetics ; Plasmids/genetics ; Species Specificity ; Virulence
Czasopismo naukowe
Tytuł:
Clusters of hairpins induce intrinsic transcription termination in bacteria.
Autorzy:
Gupta S; Department of Computational and Data Sciences, Indian Institute of Science, Bangalore, Karnataka, 560012, India.
Pal D; Department of Computational and Data Sciences, Indian Institute of Science, Bangalore, Karnataka, 560012, India. .
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Źródło:
Scientific reports [Sci Rep] 2021 Aug 10; Vol. 11 (1), pp. 16194. Date of Electronic Publication: 2021 Aug 10.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Codon, Terminator*
Genome, Bacterial*
Nucleic Acid Conformation*
Terminator Regions, Genetic*
Transcription, Genetic*
Bacteria/*genetics
RNA, Bacterial/*genetics
Bacteria/growth & development ; Operon
Czasopismo naukowe
Tytuł:
Genomic characterization of sporadic isolates of the dominant clone of Mycobacterium abscessus subspecies massiliense.
Autorzy:
Davidson RM; Center for Genes, Environment and Health, National Jewish Health, 1400 Jackson St., Denver, CO, 80206, USA. .
Benoit JB; Center for Genes, Environment and Health, National Jewish Health, 1400 Jackson St., Denver, CO, 80206, USA.
Kammlade SM; Center for Genes, Environment and Health, National Jewish Health, 1400 Jackson St., Denver, CO, 80206, USA.
Hasan NA; Center for Genes, Environment and Health, National Jewish Health, 1400 Jackson St., Denver, CO, 80206, USA.
Epperson LE; Center for Genes, Environment and Health, National Jewish Health, 1400 Jackson St., Denver, CO, 80206, USA.
Smith T; Department of Microbiology, University of Texas Health Science Center at Tyler, Tyler, TX, USA.
Vasireddy S; Department of Microbiology, University of Texas Health Science Center at Tyler, Tyler, TX, USA.
Brown-Elliott BA; Department of Microbiology, University of Texas Health Science Center at Tyler, Tyler, TX, USA.
Nick JA; Department of Medicine, National Jewish Health, Denver, CO, USA.
Olivier KN; Pulmonary Branch, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA.
Zelazny AM; Department of Laboratory Medicine, Clinical Center, National Institutes of Health, Bethesda, MD, USA.
Daley CL; Department of Medicine, National Jewish Health, Denver, CO, USA.
Strong M; Center for Genes, Environment and Health, National Jewish Health, 1400 Jackson St., Denver, CO, 80206, USA.
Wallace RJ Jr; Department of Microbiology, University of Texas Health Science Center at Tyler, Tyler, TX, USA.
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Źródło:
Scientific reports [Sci Rep] 2021 Jul 28; Vol. 11 (1), pp. 15336. Date of Electronic Publication: 2021 Jul 28.
Typ publikacji:
Journal Article; Multicenter Study; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Genome, Bacterial*
Cystic Fibrosis/*diagnosis
DNA, Bacterial/*genetics
Mycobacterium Infections, Nontuberculous/*diagnosis
Mycobacterium abscessus/*genetics
Adolescent ; Adult ; Aged ; Aged, 80 and over ; Antitubercular Agents/pharmacology ; Child ; Clone Cells ; Cystic Fibrosis/complications ; Cystic Fibrosis/microbiology ; Cystic Fibrosis/pathology ; Drug Resistance, Bacterial/genetics ; Genetic Variation ; Humans ; Middle Aged ; Mycobacterium Infections, Nontuberculous/complications ; Mycobacterium Infections, Nontuberculous/microbiology ; Mycobacterium Infections, Nontuberculous/pathology ; Mycobacterium abscessus/classification ; Mycobacterium abscessus/drug effects ; Mycobacterium abscessus/isolation & purification ; Phylogeny ; Polymorphism, Single Nucleotide ; United States/epidemiology
Czasopismo naukowe
Tytuł:
Phenotypic and genomic hallmarks of a novel, potentially pathogenic rapidly growing Mycobacterium species related to the Mycobacterium fortuitum complex.
Autorzy:
Gharbi R; Unit of Typing & Genetics of Mycobacteria, Laboratory of Molecular Microbiology, Vaccinology, and Biotechnology Development, Institut Pasteur de Tunis, Université de Tunis El Manar, Tunis, Tunisia.
Khanna V; Institut Pasteur, Hub Bioinformatique et Biostatistique, C3BI, Unité de Services et de Recherche, USR 3756, Institut Pasteur CNRS, Paris, France.
Frigui W; Institut Pasteur (IP), Unit for Integrated Mycobacterial Pathogenomics, 75015, Paris, France.
Mhenni B; Unit of Typing & Genetics of Mycobacteria, Laboratory of Molecular Microbiology, Vaccinology, and Biotechnology Development, Institut Pasteur de Tunis, Université de Tunis El Manar, Tunis, Tunisia.
Brosch R; Institut Pasteur (IP), Unit for Integrated Mycobacterial Pathogenomics, 75015, Paris, France.
Mardassi H; Unit of Typing & Genetics of Mycobacteria, Laboratory of Molecular Microbiology, Vaccinology, and Biotechnology Development, Institut Pasteur de Tunis, Université de Tunis El Manar, Tunis, Tunisia. .
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Źródło:
Scientific reports [Sci Rep] 2021 Jun 21; Vol. 11 (1), pp. 13011. Date of Electronic Publication: 2021 Jun 21.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome, Bacterial*
Genomics*/methods
Phenotype*
Mycobacterium Infections, Nontuberculous/*microbiology
Mycobacterium fortuitum/*genetics
Mycobacterium fortuitum/*growth & development
Computational Biology/methods ; Gene Transfer, Horizontal ; Humans ; Molecular Sequence Annotation ; Mycobacterium fortuitum/pathogenicity ; Phylogeny ; Virulence Factors/genetics
Czasopismo naukowe

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