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Tytuł:
Acorn: an R package for de novo variant analysis.
Autorzy:
Turner TN; Department of Genetics, Washington University School of Medicine, 4523 Clayton Avenue, Campus Box 8232, St. Louis, MO, 63110, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Sep 02; Vol. 24 (1), pp. 330. Date of Electronic Publication: 2023 Sep 02.
Typ publikacji:
Journal Article
MeSH Terms:
Genomics*
Software*
Humans ; Phenotype
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
The complete sequence of a human Y chromosome.
Autorzy:
Rhie A; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Nurk S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.; Oxford Nanopore Technologies Inc., Oxford, UK.
Cechova M; Faculty of Informatics, Masaryk University, Brno, Czech Republic.; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.
Hoyt SJ; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.
Taylor DJ; Department of Biology, Johns Hopkins University, Baltimore, MD, USA.
Altemose N; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Hook PW; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Rautiainen M; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Alexandrov IA; Federal Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.; Center for Algorithmic Biotechnology, Saint Petersburg State University, St Petersburg, Russia.; Department of Anatomy and Anthropology and Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv-Yafo, Israel.
Allen J; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Asri M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Bzikadze AV; Graduate Program in Bioinformatics and Systems Biology, University of California, San Diego, CA, USA.
Chen NC; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Chin CS; GeneDX Holdings Corp, Stamford, CT, USA.; Foundation of Biological Data Science, Belmont, CA, USA.
Diekhans M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Flicek P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.; Department of Genetics, University of Cambridge, Cambridge, UK.
Formenti G; The Rockefeller University, New York, NY, USA.
Fungtammasan A; DNAnexus, Inc., Mountain View, CA, USA.
Garcia Giron C; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Garrison E; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA.
Gershman A; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Gerton JL; Stowers Institute for Medical Research, Kansas City, MO, USA.; University of Kansas Medical Center, Kansas City, MO, USA.
Grady PGS; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.
Guarracino A; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA.; Genomics Research Centre, Human Technopole, Milan, Italy.
Haggerty L; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Halabian R; Institute of Bioinformatics, Faculty of Medicine, University of Münster, Münster, Germany.
Hansen NF; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.; Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Harris R; Department of Biology, Pennsylvania State University, University Park, PA, USA.
Hartley GA; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.
Harvey WT; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Haukness M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Heinz J; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Hourlier T; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Hubley RM; Institute for Systems Biology, Seattle, WA, USA.
Hunt SE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Hwang S; XDBio Program, Johns Hopkins University, Baltimore, MD, USA.
Jain M; Department of Bioengineering, Department of Physics, Northeastern University, Boston, MA, USA.
Kesharwani RK; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA.
Lewis AP; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Li H; Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, USA.; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
Logsdon GA; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Lucas JK; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Makalowski W; Institute of Bioinformatics, Faculty of Medicine, University of Münster, Münster, Germany.
Markovic C; Genome Technology Access Center at the McDonnell Genome Institute, Washington University, St. Louis, MO, USA.
Martin FJ; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Mc Cartney AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
McCoy RC; Department of Biology, Johns Hopkins University, Baltimore, MD, USA.
McDaniel J; Biosystems and Biomaterials Division, National Institute of Standards and Technology, Gaithersburg, MD, USA.
McNulty BM; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Medvedev P; Department of Computer Science and Engineering, Pennsylvania State University, University Park, PA, USA.; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.; Center for Computational Biology and Bioinformatics, Pennsylvania State University, University Park, PA, USA.
Mikheenko A; Center for Algorithmic Biotechnology, Saint Petersburg State University, St Petersburg, Russia.; UCL Queen Square Institute of Neurology, UCL, London, UK.
Munson KM; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Murphy TD; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Olsen HE; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Olson ND; Biosystems and Biomaterials Division, National Institute of Standards and Technology, Gaithersburg, MD, USA.
Paulin LF; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA.
Porubsky D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Potapova T; Stowers Institute for Medical Research, Kansas City, MO, USA.
Ryabov F; Masters Program in National Research University Higher School of Economics, Moscow, Russia.
Salzberg SL; Departments of Biomedical Engineering, Computer Science, and Biostatistics, Johns Hopkins University, Baltimore, MD, USA.
Sauria MEG; Department of Biology, Johns Hopkins University, Baltimore, MD, USA.
Sedlazeck FJ; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA.; Department of Computer Science, Rice University, Houston, TX, USA.
Shafin K; Google Inc., Mountain View, CA, USA.
Shepelev VA; Institute of Molecular Genetics, Moscow, Russia.
Shumate A; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Storer JM; Institute for Systems Biology, Seattle, WA, USA.
Surapaneni L; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Taravella Oill AM; Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, USA.
Thibaud-Nissen F; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Timp W; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Tomaszkiewicz M; Department of Biology, Pennsylvania State University, University Park, PA, USA.; Department of Biomedical Engineering, Pennsylvania State University, State College, PA, USA.
Vollger MR; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Walenz BP; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Watwood AC; Department of Biology, Pennsylvania State University, University Park, PA, USA.
Weissensteiner MH; Department of Biology, Pennsylvania State University, University Park, PA, USA.
Wenger AM; Pacific Biosciences, Menlo Park, CA, USA.
Wilson MA; Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, USA.
Zarate S; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Zhu Y; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA.
Zook JM; Biosystems and Biomaterials Division, National Institute of Standards and Technology, Gaithersburg, MD, USA.
Eichler EE; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Investigator, Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA.
O'Neill RJ; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Genetics and Genome Sciences, UConn Health, Farmington, CT, USA.
Schatz MC; Department of Biology, Johns Hopkins University, Baltimore, MD, USA.; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Miga KH; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Makova KD; Department of Biology, Pennsylvania State University, University Park, PA, USA.
Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA. .
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Źródło:
Nature [Nature] 2023 Sep; Vol. 621 (7978), pp. 344-354. Date of Electronic Publication: 2023 Aug 23.
Typ publikacji:
Journal Article
MeSH Terms:
Chromosomes, Human, Y*/genetics
Genomics*/methods
Genomics*/standards
Sequence Analysis, DNA*/standards
Humans ; Base Sequence ; DNA, Satellite/genetics ; Genetic Variation/genetics ; Genetics, Population ; Heterochromatin/genetics ; Multigene Family/genetics ; Reference Standards ; Segmental Duplications, Genomic/genetics ; Tandem Repeat Sequences/genetics ; Telomere/genetics
Czasopismo naukowe
Szczegóły
Tytuł:
A genomic assessment of the marine-speciation paradox within the toothed whale superfamily Delphinoidea.
Autorzy:
Westbury MV; Globe Institute, University of Copenhagen, Copenhagen, Denmark.
Cabrera AA; Globe Institute, University of Copenhagen, Copenhagen, Denmark.
Rey-Iglesia A; Globe Institute, University of Copenhagen, Copenhagen, Denmark.
De Cahsan B; Globe Institute, University of Copenhagen, Copenhagen, Denmark.
Duchêne DA; Globe Institute, University of Copenhagen, Copenhagen, Denmark.
Hartmann S; Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany.
Lorenzen ED; Globe Institute, University of Copenhagen, Copenhagen, Denmark.
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Źródło:
Molecular ecology [Mol Ecol] 2023 Sep; Vol. 32 (17), pp. 4829-4843. Date of Electronic Publication: 2023 Jul 13.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome*/genetics
Genomics*
Animals ; Phylogeny ; Gene Flow ; Hybridization, Genetic ; Whales/genetics ; Genetic Speciation
Czasopismo naukowe
Szczegóły
Tytuł:
Genomics in the long-read sequencing era.
Autorzy:
van Dijk EL; Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France. Electronic address: .
Naquin D; Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France.
Gorrichon K; National Center of Human Genomics Research (CNRGH), 91000 Évry-Courcouronnes, France.
Jaszczyszyn Y; Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France.
Ouazahrou R; Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France.
Thermes C; Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France.
Hernandez C; Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France.
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Źródło:
Trends in genetics : TIG [Trends Genet] 2023 Sep; Vol. 39 (9), pp. 649-671. Date of Electronic Publication: 2023 May 23.
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
High-Throughput Nucleotide Sequencing*/methods
Genomics*/methods
Humans ; Sequence Analysis, DNA/methods ; Computational Biology ; Gene Expression Profiling/methods
Czasopismo naukowe
Szczegóły
Tytuł:
A genome-wide comparison between selected and unselected Valle del Belice sheep reveals differences in population structure and footprints of recent selection.
Autorzy:
Ben Jemaa S; Laboratoire des Productions Animales et Fourragères, Institut National de la Recherche Agronomique de Tunisie, Université de Carthage, Ariana, Tunisia.
Tolone M; Dipartimento Scienze Agrarie, Alimentari e Forestali, University of Palermo, Palermo, Italy.
Sardina MT; Dipartimento Scienze Agrarie, Alimentari e Forestali, University of Palermo, Palermo, Italy.
Di Gerlando R; Dipartimento Scienze Agrarie, Alimentari e Forestali, University of Palermo, Palermo, Italy.
Chessari G; Dipartimento Agricoltura, Alimentazione e Ambiente, University of Catania, Catania, Italy.
Criscione A; Dipartimento Agricoltura, Alimentazione e Ambiente, University of Catania, Catania, Italy.
Persichilli C; Dipartimento di Agraria, Ambientale e Scienze dell'alimentazione, University of Molise, Campobasso, Italy.
Portolano B; Dipartimento Scienze Agrarie, Alimentari e Forestali, University of Palermo, Palermo, Italy.
Mastrangelo S; Dipartimento Scienze Agrarie, Alimentari e Forestali, University of Palermo, Palermo, Italy.
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Źródło:
Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie [J Anim Breed Genet] 2023 Sep; Vol. 140 (5), pp. 558-567. Date of Electronic Publication: 2023 May 24.
Typ publikacji:
Journal Article
MeSH Terms:
Genomics*
Multifactorial Inheritance*
Animals ; Sheep/genetics ; Genotype ; Phenotype ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Szczegóły
Tytuł:
Species boundaries to the limit: Integrating species delimitation methods is critical to avoid taxonomic inflation in the case of the Hajar banded ground gecko (Trachydactylus hajarensis).
Autorzy:
Burriel-Carranza B; Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain. Electronic address: .
Estarellas M; Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain.
Riaño G; Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain.
Talavera A; Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain.
Tejero-Cicuéndez H; Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain; Department of Biodiversity, Ecology and Evolution, Faculty of Biology, Universidad Complutense de Madrid, 28040 Madrid, Spain.
Els J; Breeding Centre for Endangered Arabian Wildlife, Environment and Protected Areas Authority, Sharjah, United Arab Emirates.
Carranza S; Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta, Barcelona, Spain.
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Źródło:
Molecular phylogenetics and evolution [Mol Phylogenet Evol] 2023 Sep; Vol. 186, pp. 107834. Date of Electronic Publication: 2023 May 30.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genomics*
Lizards*/genetics
Animals ; Phylogeny ; Genome ; Arabia
Czasopismo naukowe
Szczegóły
Tytuł:
Multi-level functional genomics reveals molecular and cellular oncogenicity of patient-based 3' untranslated region mutations.
Autorzy:
Schuster SL; Molecular and Cellular Biology Graduate Program, University of Washington, Seattle, WA 98195, USA; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Arora S; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Wladyka CL; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Itagi P; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA; Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Corey L; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Young D; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Stackhouse BL; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Kollath L; Department of Urology, University of Washington, Seattle, WA 98195, USA.
Wu QV; Clinical Research Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Corey E; Department of Urology, University of Washington, Seattle, WA 98195, USA.
True LD; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA 98195, USA.
Ha G; Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Paddison PJ; Molecular and Cellular Biology Graduate Program, University of Washington, Seattle, WA 98195, USA; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Hsieh AC; Molecular and Cellular Biology Graduate Program, University of Washington, Seattle, WA 98195, USA; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA; Department of Medicine, University of Washington, Seattle, WA 98195, USA. Electronic address: .
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Źródło:
Cell reports [Cell Rep] 2023 Aug 29; Vol. 42 (8), pp. 112840. Date of Electronic Publication: 2023 Jul 28.
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Regulatory Sequences, Nucleic Acid*
Genomics*
Humans ; 3' Untranslated Regions/genetics ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Mutation/genetics ; 5' Untranslated Regions
Czasopismo naukowe
Szczegóły
Tytuł:
Determining the utility of diagnostic genomics: a conceptual framework.
Autorzy:
Mallett A; Australian Genomics, Murdoch Children's Research Institute, Melbourne, VIC, Australia. .; College of Medicine and Dentistry, James Cook University, Douglas, QLD, Australia. .; Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia. .; Department of Renal Medicine, Townsville University Hospital, Douglas, QLD, 4029, Australia. .
Stark Z; Australian Genomics, Murdoch Children's Research Institute, Melbourne, VIC, Australia.; Victorian Clinical Genetics Services, Murdoch Children's Research Institute, Melbourne, VIC, Australia.; University of Melbourne, Melbourne, VIC, Australia.
Fehlberg Z; Australian Genomics, Murdoch Children's Research Institute, Melbourne, VIC, Australia.; University of Melbourne, Melbourne, VIC, Australia.
Best S; Australian Genomics, Murdoch Children's Research Institute, Melbourne, VIC, Australia.; University of Melbourne, Melbourne, VIC, Australia.; Department of Health Services Research, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.; Victorian Comprehensive Cancer Centre Alliance, Melbourne, VIC, Australia.
Goranitis I; Australian Genomics, Murdoch Children's Research Institute, Melbourne, VIC, Australia.; Victorian Clinical Genetics Services, Murdoch Children's Research Institute, Melbourne, VIC, Australia.; University of Melbourne, Melbourne, VIC, Australia.
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Źródło:
Human genomics [Hum Genomics] 2023 Aug 16; Vol. 17 (1), pp. 75. Date of Electronic Publication: 2023 Aug 16.
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
Genomics*
Rare Diseases*
Humans ; Retrospective Studies
Czasopismo naukowe
Szczegóły
Tytuł:
ClustFinder: A tool for threshold-delineated clustering of microbial isolates by pairwise genomic distance.
Autorzy:
Chaggar HK; Department of Food Science, University of Tennessee, Knoxville, TN, USA.
Hudson LK; Department of Food Science, University of Tennessee, Knoxville, TN, USA.
Kuster R; Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, USA.
Garman KN; Tennessee Department of Health, Nashville, TN 37243, USA.
Dunn JR; Tennessee Department of Health, Nashville, TN 37243, USA.
Denes TG; Department of Food Science, University of Tennessee, Knoxville, TN, USA. Electronic address: .
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Źródło:
Journal of microbiological methods [J Microbiol Methods] 2023 Aug; Vol. 211, pp. 106788. Date of Electronic Publication: 2023 Jul 17.
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, P.H.S.
MeSH Terms:
Software*
Genomics*
Genome ; Cluster Analysis
Czasopismo naukowe
Szczegóły
Tytuł:
Genomic recovery lags behind demographic recovery in bottlenecked populations of the Channel Island fox, Urocyon littoralis.
Autorzy:
Adams NE; Department of Biological Sciences, University of Southern California, Los Angeles, California, USA.
Edmands S; Department of Biological Sciences, University of Southern California, Los Angeles, California, USA.
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Źródło:
Molecular ecology [Mol Ecol] 2023 Aug; Vol. 32 (15), pp. 4151-4164. Date of Electronic Publication: 2023 May 22.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Foxes*/genetics
Genomics*
Animals ; Endangered Species ; Population Density ; Channel Islands ; Genetic Variation/genetics
Czasopismo naukowe
Szczegóły
Tytuł:
Breaking enhancers to gain insights into developmental defects.
Autorzy:
Armendariz DA; Cecil H. and Ida Green Center for Reproductive Biology Sciences, University of Texas Southwestern Medical Center, Dallas, United States.
Sundarrajan A; Cecil H. and Ida Green Center for Reproductive Biology Sciences, University of Texas Southwestern Medical Center, Dallas, United States.
Hon GC; Cecil H. and Ida Green Center for Reproductive Biology Sciences, University of Texas Southwestern Medical Center, Dallas, United States.; Hamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, Dallas, United States.; Lyda Hill Department of Bioinformatics, Department of Obstetrics and Gynecology, University of Texas Southwestern Medical Center, Dallas, United States.
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Źródło:
ELife [Elife] 2023 Jul 27; Vol. 12. Date of Electronic Publication: 2023 Jul 27.
Typ publikacji:
Review; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Enhancer Elements, Genetic*/genetics
Genomics*
Czasopismo naukowe
Szczegóły
Tytuł:
Boosting wheat functional genomics via an indexed EMS mutant library of KN9204.
Autorzy:
Wang D; Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.
Li Y; Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China; Center for Agricultural Resources Research, Institute of Genetics and Development Biology, Chinese Academy of Sciences, Shijiazhuang 050022, China.
Wang H; Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
Xu Y; Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
Yang Y; Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.
Zhou Y; Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
Chen Z; Department of Life Science, Tcuni, Inc, Chengdu 610000, China.
Zhou Y; Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
Gui L; Department of Life Science, Tcuni, Inc, Chengdu 610000, China.
Guo Y; Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China.
Zhou C; Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China.
Tang W; Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China.
Zheng S; Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China.
Wang L; Center for Agricultural Resources Research, Institute of Genetics and Development Biology, Chinese Academy of Sciences, Shijiazhuang 050022, China.
Guo X; Plant Genetic Engineering Center of Hebei Province, Institute of Biotechnology and Food Science, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang 050051, China.
Zhang Y; Institute of Cereal and Oil Crops, Hebei Academy of Agriculture and Forestry Sciences, Laboratory of Crop Genetics and Breeding of Hebei, Shijiazhuang 050035, China.
Cui F; Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong, College of Agriculture, Ludong University, Yantai 264025, China.
Lin X; Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.
Jiao Y; State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, School of Life Sciences, Center for Quantitative Biology, Peking University, Beijing 100871, China.
He Y; State Key Laboratory of Protein and Plant Gene Research, School of Advanced Agricultural Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China.
Li J; Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China; Center for Agricultural Resources Research, Institute of Genetics and Development Biology, Chinese Academy of Sciences, Shijiazhuang 050022, China. Electronic address: .
He F; Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China; Centre of Excellence for Plant and Microbial Science (CEPAMS), JIC-CAS, Beijing 100101, China. Electronic address: .
Liu X; Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China. Electronic address: .
Xiao J; Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China; Centre of Excellence for Plant and Microbial Science (CEPAMS), JIC-CAS, Beijing 100101, China. Electronic address: .
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Źródło:
Plant communications [Plant Commun] 2023 Jul 10; Vol. 4 (4), pp. 100593. Date of Electronic Publication: 2023 Mar 21.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Triticum*/genetics
Genomics*
Mutation ; Mutagenesis ; Phenotype
Czasopismo naukowe
Szczegóły
Tytuł:
Studying the impact of translational genomic research: Lessons from eMERGE.
Autorzy:
Clayton EW; Center for Biomedical Ethics and Society, Departments of Pediatrics and Health Policy, Vanderbilt University Medical Center, Nashville, TN 37203, USA. Electronic address: .
Smith ME; Department of Medicine, Center for Genetic Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Anderson KC; Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Chung WK; Departments of Pediatrics and Medicine, Columbia University, New York, NY 10032, USA.
Connolly JJ; Center for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Fullerton SM; Department of Bioethics & Humanities, University of Washington School of Medicine, Seattle, WA 98195, USA.
McGowan ML; Biomedical Ethics Research Program, Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN 55905, USA; Department of Women's, Gender, and Sexuality Studies, University of Cincinnati, Cincinnati, OH 45221, USA.
Peterson JF; Center for Precision Medicine, Department of Biomedical Informatics, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37203, USA.
Prows CA; Divisions of Human Genetics and Patient Services, Cincinnati Children's Hospital, Cincinnati, OH 45229, USA.
Sabatello M; Center for Precision Medicine & Genomics, Department of Medicine, and Division of Ethics, Department of Medical Humanities & Ethics Columbia University Vagelos College of Physicians and Surgeons, NY, NY 10032, USA.
Holm IA; Division of Genetics and Genomics, Boston Children's Hospital; Department of Pediatrics, Harvard Medical School, Boston, MA 02115, USA.
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Źródło:
American journal of human genetics [Am J Hum Genet] 2023 Jul 06; Vol. 110 (7), pp. 1021-1033. Date of Electronic Publication: 2023 Jun 20.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Electronic Health Records*
Genomics*
Child ; Adult ; Humans ; Genome ; Translational Research, Biomedical ; Population Groups
Czasopismo naukowe
Szczegóły
Tytuł:
3D-GNOME 3.0: a three-dimensional genome modelling engine for analysing changes of promoter-enhancer contacts in the human genome.
Autorzy:
Wlasnowolski M; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, 00-662, Poland.; Centre of New Technologies, University of Warsaw, Warsaw, 02-097, Poland.
Kadlof M; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, 00-662, Poland.
Sengupta K; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, 00-662, Poland.; Centre of New Technologies, University of Warsaw, Warsaw, 02-097, Poland.
Plewczynski D; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, 00-662, Poland.; Centre of New Technologies, University of Warsaw, Warsaw, 02-097, Poland.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Jul 05; Vol. 51 (W1), pp. W5-W10.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromatin*/chemistry
Genome, Human*/genetics
Genomics*/instrumentation
Genomics*/methods
Data Visualization*
Humans ; Enhancer Elements, Genetic ; Promoter Regions, Genetic ; Molecular Conformation ; Computer Simulation ; Internet
Czasopismo naukowe
Szczegóły
Tytuł:
TransCRISPR-sgRNA design tool for CRISPR/Cas9 experiments targeting specific sequence motifs.
Autorzy:
Woźniak T; Institute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.
Sura W; Institute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.
Kazimierska M; Institute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.
Kasprzyk ME; Institute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.
Podralska M; Institute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.
Dzikiewicz-Krawczyk A; Institute of Human Genetics, Polish Academy of Sciences, Poznań, Poland.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Jul 05; Vol. 51 (W1), pp. W577-W586.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
CRISPR-Cas Systems*/genetics
Genomics*/instrumentation
Genomics*/methods
Binding Sites/genetics ; Genome ; RNA, Guide, CRISPR-Cas Systems ; Internet ; Molecular Conformation
Czasopismo naukowe
Szczegóły
Tytuł:
OpenXGR: a web-server update for genomic summary data interpretation.
Autorzy:
Bao C; Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai200025, China.
Wang S; Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai200025, China.
Jiang L; Translational Health Sciences, University of Bristol, BristolBS1 3NY, UK.
Fang Z; Bioinformatics Department, School of Life Sciences and Technology, Tongji University, Shanghai200092, China.
Zou K; School of Life Sciences, Central South University, Hunan410083, China.
Lin J; High Performance Computing Center, Shanghai Jiao Tong University, Shanghai200240, China.
Chen S; Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai200025, China.
Fang H; Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai200025, China.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Jul 05; Vol. 51 (W1), pp. W387-W396.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genomics*/instrumentation
Genomics*/methods
Software*
Humans ; Genome, Human ; Internet ; Regulatory Sequences, Nucleic Acid ; Computer Simulation ; Chromosome Mapping
Czasopismo naukowe
Szczegóły
Tytuł:
ChroKit: a Shiny-based framework for interactive analysis, visualization and integration of genomic data.
Autorzy:
Croci O; Center for Genomic Science of , Fondazione Istituto Italiano di Tecnologia (IIT), Milan20139, Italy.
Campaner S; Center for Genomic Science of , Fondazione Istituto Italiano di Tecnologia (IIT), Milan20139, Italy.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Jul 05; Vol. 51 (W1), pp. W83-W92.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome*
Genomics*/instrumentation
Genomics*/methods
Software*
Data Visualization*
Reproducibility of Results ; User-Computer Interface
Czasopismo naukowe
Szczegóły
Tytuł:
Vibrio-Sequins - dPCR-traceable DNA standards for quantitative genomics of Vibrio spp.
Autorzy:
Flütsch S; Swiss Federal Institute of Metrology METAS, Lindenweg 50, Bern-Wabern, 3003, Switzerland. .; Swiss Federal Institute of Metrology METAS, Campus Liebefeld, Schwarzenburgstrasse 165, Bern-Köniz, 3097, Switzerland. .
Wiestner F; Swiss Federal Institute of Metrology METAS, Lindenweg 50, Bern-Wabern, 3003, Switzerland.; Swiss Federal Institute of Metrology METAS, Campus Liebefeld, Schwarzenburgstrasse 165, Bern-Köniz, 3097, Switzerland.
Butticaz L; Federal Food Safety and Veterinary Office FSVO, Schwarzenburgstrasse 165, Bern-Köniz, 3003, Switzerland.; Swiss Federal Institute of Metrology METAS, Campus Liebefeld, Schwarzenburgstrasse 165, Bern-Köniz, 3097, Switzerland.
Moor D; Federal Food Safety and Veterinary Office FSVO, Schwarzenburgstrasse 165, Bern-Köniz, 3003, Switzerland.; Swiss Federal Institute of Metrology METAS, Campus Liebefeld, Schwarzenburgstrasse 165, Bern-Köniz, 3097, Switzerland.
Stölting KN; Swiss Federal Institute of Metrology METAS, Lindenweg 50, Bern-Wabern, 3003, Switzerland. .; Swiss Federal Institute of Metrology METAS, Campus Liebefeld, Schwarzenburgstrasse 165, Bern-Köniz, 3097, Switzerland. .
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Źródło:
BMC genomics [BMC Genomics] 2023 Jul 04; Vol. 24 (1), pp. 375. Date of Electronic Publication: 2023 Jul 04.
Typ publikacji:
Journal Article
MeSH Terms:
DNA*/genetics
Genomics*
Polymerase Chain Reaction/methods ; Base Sequence
Czasopismo naukowe
Szczegóły
Wyświetlanie 1-20 z 234215

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