Temat: "Genotyping" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: Inferring feature importance with uncertainties with application to large genotype data.
Autorzy:: Johnsen PV; SINTEF DIGITAL, Oslo, Norway.; Department of Mathematical Sciences, Norwegian University of Science and Technology, Trondheim, Norway.
Strümke I; Department of Engineering Cybernetics, Norwegian University of Science and Technology, Trondheim, Norway.; Department of Holistic Systems, SimulaMet, Oslo, Norway.
Langaas M; Department of Mathematical Sciences, Norwegian University of Science and Technology, Trondheim, Norway.
DeWan AT; Department of Chronic Disease Epidemiology and Center for Perinatal, Pediatric and Environmental Epidemiology, Yale School of Public Health, New Haven, Connecticut, United States of America.
Riemer-Sørensen S; SINTEF DIGITAL, Oslo, Norway.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2023 Mar 14; Vol. 19 (3), pp. e1010963. Date of Electronic Publication: 2023 Mar 14 (Print Publication: 2023).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Uncertainty*
Genotyping Techniques*

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Skocz do pozycji: 2.

Tytuł:: A rapid and reference-free imputation method for low-cost genotyping platforms.
Autorzy:: Chi Duong V; Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam.; GeneStory Joint Stock Company, Hanoi, Vietnam.
Minh Vu G; Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam.; GeneStory Joint Stock Company, Hanoi, Vietnam.
Khac Nguyen T; GeneStory Joint Stock Company, Hanoi, Vietnam.
Tran The Nguyen H; Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam.; Nanyang Technological University, Singapore, Singapore.
Luong Pham T; GeneStory Joint Stock Company, Hanoi, Vietnam.
S Vo N; Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam. .; GeneStory Joint Stock Company, Hanoi, Vietnam. .
Hong Hoang T; Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam. .; GeneStory Joint Stock Company, Hanoi, Vietnam. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2023 Dec 27; Vol. 13 (1), pp. 23083. Date of Electronic Publication: 2023 Dec 27.
Typ publikacji:: Journal Article
MeSH Terms:: Polymorphism, Single Nucleotide*
Genome*
Humans ; Genotype ; Gene Frequency ; Genome-Wide Association Study/methods ; Genotyping Techniques/methods

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Skocz do pozycji: 3.

Tytuł:: Forensic DNA phenotyping: Canis familiaris breed classification and skeletal phenotype prediction using functionally significant skeletal SNPs and indels.
Autorzy:: Raymond PW; School of Life and Environmental Sciences, University of Sydney, Sydney, Australia.
Velie BD; School of Life and Environmental Sciences, University of Sydney, Sydney, Australia.
Wade CM; School of Life and Environmental Sciences, University of Sydney, Sydney, Australia.; Pokaż więcej
Źródło:: Animal genetics [Anim Genet] 2022 Jun; Vol. 53 (3), pp. 247-263. Date of Electronic Publication: 2021 Dec 28.
Typ publikacji:: Journal Article; Review
MeSH Terms:: Genotyping Techniques*
Polymorphism, Single Nucleotide*
Animals ; DNA/genetics ; Dogs ; Gene Frequency ; Phenotype

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Skocz do pozycji: 4.

Tytuł:: Red cell genotyping: Real world use.
Autorzy:: Takasaki K; Division of Hematology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Chou ST; Division of Hematology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.; Division of Transfusion Medicine, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.; Pokaż więcej
Źródło:: Transfusion medicine (Oxford, England) [Transfus Med] 2022 Jun; Vol. 32 (3), pp. 185-186. Date of Electronic Publication: 2022 Apr 25.
Typ publikacji:: Journal Article
MeSH Terms:: Blood Grouping and Crossmatching*
Genotyping Techniques*
Genotype ; Humans ; Real-Time Polymerase Chain Reaction

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Skocz do pozycji: 5.

Tytuł:: Extended-spectrum β-lactamase-producing E. coli from retail meat and workers: genetic diversity, virulotyping, pathotyping and the antimicrobial effect of silver nanoparticles.
Autorzy:: Ahmed HA; Department of Zoonoses, Faculty of Veterinary Medicine, Zagazig University, Zagazig City, 44511, Sharkia Governorate, Egypt. heba_.
Elsohaby I; Department of Infectious Diseases and Public Health, Jockey Club of Veterinary Medicine and Life Sciences, City University of Hong Kong, Hong Kong SAR, China.; Centre for Applied One Health Research and Policy Advice (OHRP), City University of Hong Kong, Hong Kong SAR, China.; Department of Animal Medicine, Faculty of Veterinary Medicine, Zagazig University, Zagazig City, 44511, Sharkia Governorate, Egypt.
Elamin AM; Department of Food Hygiene, Zagazig Branch, Agriculture Research Center (ARC), Animal Health Research Institute (AHRI), Zagazig City, Egypt.
El-Ghafar AEA; Department of Bacteriology, Mansoura Branch, Agriculture Research Center (ARC), Animal Health Research Institute (AHRI), Mansoura City, Egypt.
Elsaid GA; Department of Food Hygiene, Mansoura Branch, Agriculture Research Center (ARC), Animal Health Research Institute (AHRI), Mansoura City, Egypt.
Elbarbary M; Department of Food Hygiene, Zagazig Branch, Agriculture Research Center (ARC), Animal Health Research Institute (AHRI), Zagazig City, Egypt.
Mohsen RA; Department of Bacteriology, Mansoura Branch, Agriculture Research Center (ARC), Animal Health Research Institute (AHRI), Mansoura City, Egypt.
El Feky TM; Department of Bacteriology, Mansoura Branch, Agriculture Research Center (ARC), Animal Health Research Institute (AHRI), Mansoura City, Egypt.
El Bayomi RM; Department of Food Control, Faculty of Veterinary Medicine, Zagazig University, Zagazig City, 44511, Sharkia Governorate, Egypt.; Pokaż więcej
Źródło:: BMC microbiology [BMC Microbiol] 2023 Aug 07; Vol. 23 (1), pp. 212. Date of Electronic Publication: 2023 Aug 07.
Typ publikacji:: Journal Article
MeSH Terms:: Metal Nanoparticles*
Silver*/pharmacology
Meat*/microbiology
Escherichia coli*/drug effects
Escherichia coli*/genetics
Food Contamination ; Humans ; Egypt ; beta-Lactamases ; Genotyping Techniques ; Drug Resistance, Bacterial

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Skocz do pozycji: 6.

Tytuł:: Comparison of variants in TPMT and NUDT15 between sequencing and genotyping methods in a multistate pediatric institution.
Autorzy:: Cook KJ; Precision Medicine, Nemours Children's Health, Jacksonville, Florida, USA.; Department of Pharmacotherapy and Translational Research, The University of Florida College of Pharmacy, Jacksonville, Florida, USA.
Grusauskas V; Precision Medicine, Nemours Children's Health, Jacksonville, Florida, USA.; Department of Pharmacotherapy and Translational Research, The University of Florida College of Pharmacy, Jacksonville, Florida, USA.
Gloe L; Precision Medicine, Nemours Children's Health, Jacksonville, Florida, USA.; Department of Pharmacotherapy and Translational Research, The University of Florida College of Pharmacy, Jacksonville, Florida, USA.
Duong BQ; Precision Medicine, Nemours Children's Health, Wilmington, Delaware, USA.
Gresh RC; Department of Pediatric Hematology/Oncology, Nemours Children's Health, Wilmington, Delaware, USA.
Kolb EA; Department of Pediatric Hematology/Oncology, Nemours Children's Health, Wilmington, Delaware, USA.
Bansal M; Department of Pediatric Hematology/Oncology, Nemours Children's Health, Jacksonville, Florida, USA.
Bechtel AS; Department of Pediatric Hematology/Oncology, Nemours Children's Health, Jacksonville, Florida, USA.
Nagasubramanian R; Nemours Children's Hospital, Orlando, Florida, USA.
Kirwin SM; Molecular Diagnostics Laboratory, Nemours Children's Health, Wilmington, Delaware, USA.
Blake KV; Precision Medicine, Nemours Children's Health, Jacksonville, Florida, USA.
Seligson ND; Precision Medicine, Nemours Children's Health, Jacksonville, Florida, USA.; Department of Pharmacotherapy and Translational Research, The University of Florida College of Pharmacy, Jacksonville, Florida, USA.; Pokaż więcej
Źródło:: Clinical and translational science [Clin Transl Sci] 2023 Aug; Vol. 16 (8), pp. 1352-1358. Date of Electronic Publication: 2023 Jul 06.
Typ publikacji:: Comparative Study; Journal Article; Multicenter Study; Research Support, Non-U.S. Gov't
MeSH Terms:: Azathioprine*/adverse effects
Polymorphism, Genetic*
Humans ; Genetic Testing ; Genotype ; Genotyping Techniques

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Skocz do pozycji: 7.

Tytuł:: Establishment of Rapid Detection Methods for rs76971248 Related to Leukemia.
Autorzy:: Sun LY; Institution of Transfusion Medicine, Shenzhen Blood Center, Shenzhen, Guangdong 518035, China.; Department of Transfusion Medicine, School of Laboratory Medicine and Biotechnology, Southern Medical University, Guangzhou, Guangdong 510515, China.
Li Z; Institution of Transfusion Medicine, Shenzhen Blood Center, Shenzhen, Guangdong 518035, China.
Wang SX; Institution of Transfusion Medicine, Shenzhen Blood Center, Shenzhen, Guangdong 518035, China.
Chen H; Institution of Transfusion Medicine, Shenzhen Blood Center, Shenzhen, Guangdong 518035, China.
Sun ZT; Institution of Transfusion Medicine, Shenzhen Blood Center, Shenzhen, Guangdong 518035, China.
Peng L; Institution of Transfusion Medicine, Shenzhen Blood Center, Shenzhen, Guangdong 518035, China.
He LM; Institution of Transfusion Medicine, Shenzhen Blood Center, Shenzhen, Guangdong 518035, China.
Xu YP; Institution of Transfusion Medicine, Shenzhen Blood Center, Shenzhen, Guangdong 518035, China.; Pokaż więcej
Źródło:: Disease markers [Dis Markers] 2022 Mar 29; Vol. 2022, pp. 9847708. Date of Electronic Publication: 2022 Mar 29 (Print Publication: 2022).
Typ publikacji:: Journal Article
MeSH Terms:: Genotyping Techniques*
Leukemia*/diagnosis
Leukemia*/genetics
DNA ; Genotype ; Humans ; Polymorphism, Genetic

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Skocz do pozycji: 8.

Tytuł:: Universal probe-based intermediate primer-triggered qPCR (UPIP-qPCR) for SNP genotyping.
Autorzy:: Li B; Key Laboratory of Biological Medicines in Universities of Shandong Province, Weifang Key Laboratory of Antibody Medicines, School of Bioscience and Technology, Weifang Medical University, Jinan, 261053, Shandong, China. .; Institute for Translational Medicine, Qingdao University, Qingdao, 266021, China. .
Liu Y; School of Basic Medicine, Qingdao University, Qingdao, 266021, China.
Hao X; Institute for Translational Medicine, Qingdao University, Qingdao, 266021, China.
Dong J; Key Laboratory of Biological Medicines in Universities of Shandong Province, Weifang Key Laboratory of Antibody Medicines, School of Bioscience and Technology, Weifang Medical University, Jinan, 261053, Shandong, China.
Chen L; Key Laboratory of Biological Medicines in Universities of Shandong Province, Weifang Key Laboratory of Antibody Medicines, School of Bioscience and Technology, Weifang Medical University, Jinan, 261053, Shandong, China.
Li H; Key Laboratory of Biological Medicines in Universities of Shandong Province, Weifang Key Laboratory of Antibody Medicines, School of Bioscience and Technology, Weifang Medical University, Jinan, 261053, Shandong, China.
Wu W; College of Food Science and Engineering, Qingdao Agricultural University, Qingdao, 266109, China.
Liu Y; Institute for Translational Medicine, Qingdao University, Qingdao, 266021, China.
Wang J; School of Basic Medicine, Qingdao University, Qingdao, 266021, China.
Wang Y; Institute for Translational Medicine, Qingdao University, Qingdao, 266021, China.
Li P; Institute for Translational Medicine, Qingdao University, Qingdao, 266021, China. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2021 Nov 24; Vol. 22 (1), pp. 850. Date of Electronic Publication: 2021 Nov 24.
Typ publikacji:: Journal Article
MeSH Terms:: Genotyping Techniques*
Polymorphism, Single Nucleotide*
Alleles ; Genotype ; Humans ; Real-Time Polymerase Chain Reaction

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Skocz do pozycji: 9.

Tytuł:: Detection of Mycobacterium tuberculosis multiple strains in sputum samples from patients with pulmonary tuberculosis in south western Uganda using MIRU-VNTR.
Autorzy:: Micheni LN; Department of Microbiology, Mbarara University of Science and Technology, Box 1410, Mbarara, Uganda. .; Department of Microbiology and Immunology, Kampala International University Western Campus, Box 71, Bushenyi, Uganda. .
Kassaza K; Department of Microbiology, Mbarara University of Science and Technology, Box 1410, Mbarara, Uganda.
Kinyi H; Department of Biochemistry, School of Medicine, Kabale University, Box 317, Kabale, Uganda.
Ntulume I; Department of Microbiology and Immunology, Kampala International University Western Campus, Box 71, Bushenyi, Uganda.
Bazira J; Department of Microbiology, Mbarara University of Science and Technology, Box 1410, Mbarara, Uganda. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2022 Jan 31; Vol. 12 (1), pp. 1656. Date of Electronic Publication: 2022 Jan 31.
Typ publikacji:: Journal Article
MeSH Terms:: Bacteriological Techniques*
Genotyping Techniques*
Interspersed Repetitive Sequences*
Minisatellite Repeats*
DNA, Bacterial/*genetics
Mycobacterium tuberculosis/*genetics
Sputum/*microbiology
Tuberculosis, Pulmonary/*microbiology
Adolescent ; Adult ; Coinfection ; DNA, Bacterial/isolation & purification ; Female ; Genotype ; HIV Infections/diagnosis ; HIV Infections/epidemiology ; HIV Infections/virology ; Humans ; Male ; Middle Aged ; Mycobacterium tuberculosis/classification ; Mycobacterium tuberculosis/isolation & purification ; Phylogeny ; Predictive Value of Tests ; Prevalence ; Tuberculosis, Pulmonary/diagnosis ; Tuberculosis, Pulmonary/epidemiology ; Uganda/epidemiology ; Young Adult

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Skocz do pozycji: 10.

Tytuł:: Insights into opium poppy (Papaver spp.) genetic diversity from genotyping-by-sequencing analysis.
Autorzy:: Hong UVT; La Trobe Institute for Agriculture and Food, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia.; Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia.
Tamiru-Oli M; La Trobe Institute for Agriculture and Food, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia. .; Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia. .
Hurgobin B; La Trobe Institute for Agriculture and Food, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia.; Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia.
Okey CR; Palla Pharma Ltd, Docklands, VIC, 3008, Australia.
Abreu AR; Palla Pharma Ltd, Docklands, VIC, 3008, Australia.
Lewsey MG; La Trobe Institute for Agriculture and Food, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia. .; Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 111. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Genes, Plant*
Genetic Variation*
Genome, Plant*
Genotyping Techniques*
Polymorphism, Single Nucleotide*
Sequence Analysis, DNA*
DNA, Plant/*genetics
Papaver/*genetics
Seeds/*genetics
Alkaloids/metabolism ; Genotype ; Papaver/growth & development ; Papaver/metabolism ; Phenotype ; Phylogeny ; Seeds/growth & development ; Seeds/metabolism

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Skocz do pozycji: 11.

Tytuł:: Roles of extended human papillomavirus genotyping and multiple infections in early detection of cervical precancer and cancer and HPV vaccination.
Autorzy:: Song F; Department of Obstetrics and Gynecology, Peking University Shenzhen Hospital, Shenzhen, 518036, Guangdong, P. R. China.; Institute of Obstetrics and Gynecology, Shenzhen PKU-HKUST Medical Center, Shenzhen, 518036, Guangdong, P. R. China.; Shenzhen Key Laboratory on Technology for Early Diagnosis of Major Gynecological Diseases, Shenzhen, 518036, Guangdong, P. R. China.
Yan P; Department of Obstetrics and Gynecology, Peking University Shenzhen Hospital, Shenzhen, 518036, Guangdong, P. R. China.; Institute of Obstetrics and Gynecology, Shenzhen PKU-HKUST Medical Center, Shenzhen, 518036, Guangdong, P. R. China.; Shenzhen Key Laboratory on Technology for Early Diagnosis of Major Gynecological Diseases, Shenzhen, 518036, Guangdong, P. R. China.
Huang X; Department of Obstetrics and Gynecology, Peking University Shenzhen Hospital, Shenzhen, 518036, Guangdong, P. R. China.; Institute of Obstetrics and Gynecology, Shenzhen PKU-HKUST Medical Center, Shenzhen, 518036, Guangdong, P. R. China.; Shenzhen Key Laboratory on Technology for Early Diagnosis of Major Gynecological Diseases, Shenzhen, 518036, Guangdong, P. R. China.
Wang C; Department of Obstetrics and Gynecology, Peking University Shenzhen Hospital, Shenzhen, 518036, Guangdong, P. R. China.; Institute of Obstetrics and Gynecology, Shenzhen PKU-HKUST Medical Center, Shenzhen, 518036, Guangdong, P. R. China.; Shenzhen Key Laboratory on Technology for Early Diagnosis of Major Gynecological Diseases, Shenzhen, 518036, Guangdong, P. R. China.
Du H; Department of Obstetrics and Gynecology, Peking University Shenzhen Hospital, Shenzhen, 518036, Guangdong, P. R. China. duhui_.; Institute of Obstetrics and Gynecology, Shenzhen PKU-HKUST Medical Center, Shenzhen, 518036, Guangdong, P. R. China. duhui_.; Shenzhen Key Laboratory on Technology for Early Diagnosis of Major Gynecological Diseases, Shenzhen, 518036, Guangdong, P. R. China. duhui_.
Qu X; Sanming Project of Medicine in Shenzhen, Peking University Shenzhen Hospital, Shenzhen, 518036, Guangdong, China. .
Wu R; Department of Obstetrics and Gynecology, Peking University Shenzhen Hospital, Shenzhen, 518036, Guangdong, P. R. China. .; Institute of Obstetrics and Gynecology, Shenzhen PKU-HKUST Medical Center, Shenzhen, 518036, Guangdong, P. R. China. .; Shenzhen Key Laboratory on Technology for Early Diagnosis of Major Gynecological Diseases, Shenzhen, 518036, Guangdong, P. R. China. .; Pokaż więcej
Źródło:: BMC cancer [BMC Cancer] 2022 Jan 06; Vol. 22 (1), pp. 42. Date of Electronic Publication: 2022 Jan 06.
Typ publikacji:: Journal Article
MeSH Terms:: Genotyping Techniques*
Papillomaviridae/*genetics
Papillomavirus Vaccines/*genetics
Precancerous Conditions/*virology
Uterine Cervical Neoplasms/*virology
Adult ; Early Detection of Cancer/methods ; Female ; Genotype ; Humans ; Incidence ; Logistic Models ; Middle Aged ; Papillomavirus Infections/prevention & control ; Papillomavirus Infections/virology ; Precancerous Conditions/epidemiology ; Precancerous Conditions/prevention & control ; Predictive Value of Tests ; Uterine Cervical Neoplasms/epidemiology ; Uterine Cervical Neoplasms/prevention & control ; Uterine Cervical Dysplasia/epidemiology ; Uterine Cervical Dysplasia/prevention & control ; Uterine Cervical Dysplasia/virology

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Skocz do pozycji: 12.

Tytuł:: Genotyping-in-Thousands by sequencing panel development and application to inform kokanee salmon (Oncorhynchus nerka) fisheries management at multiple scales.
Autorzy:: Chang SL; Department of Biology, University of British Columbia, Kelowna, BC, Canada.
Ward HGM; British Columbia Ministry of Forests, Lands, Natural Resource Operations and Rural Development, Penticton, BC, Canada.
Russello MA; Department of Biology, University of British Columbia, Kelowna, BC, Canada.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2021 Dec 23; Vol. 16 (12), pp. e0261966. Date of Electronic Publication: 2021 Dec 23 (Print Publication: 2021).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Fisheries*
Genotype*
Genotyping Techniques*
Microsatellite Repeats*
Polymorphism, Single Nucleotide*
Salmon/*genetics
Animals ; British Columbia ; Female ; Male

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Skocz do pozycji: 13.

Tytuł:: Increasing calling accuracy, coverage, and read-depth in sequence data by the use of haplotype blocks.
Autorzy:: Pook T; Center for Integrated Breeding Research, Animal Breeding and Genetics Group, University of Goettingen, Goettingen, Germany.
Nemri A; KWS SAAT SE & Co. KGaA, Einbeck, Germany.
Gonzalez Segovia EG; Plant Breeding, Technical University of Munich, TUM School of Life Sciences Weihenstephan, Freising, Germany.
Valle Torres D; Plant Breeding, Technical University of Munich, TUM School of Life Sciences Weihenstephan, Freising, Germany.
Simianer H; Center for Integrated Breeding Research, Animal Breeding and Genetics Group, University of Goettingen, Goettingen, Germany.
Schoen CC; Plant Breeding, Technical University of Munich, TUM School of Life Sciences Weihenstephan, Freising, Germany.; Pokaż więcej
Źródło:: PLoS genetics [PLoS Genet] 2021 Dec 23; Vol. 17 (12), pp. e1009944. Date of Electronic Publication: 2021 Dec 23 (Print Publication: 2021).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Genotyping Techniques*
Software*
Genome-Wide Association Study/*standards
Haplotypes/*genetics
DNA Copy Number Variations/genetics ; Genome/genetics ; Genomics/methods ; Genotype ; Polymorphism, Single Nucleotide/genetics ; Whole Genome Sequencing ; Zea mays/genetics

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Skocz do pozycji: 14.

Tytuł:: Pangenomics enables genotyping of known structural variants in 5202 diverse genomes.
Autorzy:: Sirén J; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Monlong J; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Chang X; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Novak AM; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Eizenga JM; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Markello C; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Sibbesen JA; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Hickey G; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Chang PC; Google Inc., Mountain View, CA, USA.
Carroll A; Google Inc., Mountain View, CA, USA.
Gupta N; Genomics Platform, Broad Institute, Cambridge, MA, USA.
Gabriel S; Program in Medical and Population Genetics, Broad Institute, Cambridge, MA, USA.
Blackwell TW; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA.
Ratan A; Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA.
Taylor KD; The Institute for Translational Genomics and Population Sciences, Department of Pediatrics, The Lundquist Institute for Biomedical Innovation at Harbor-UCLA Medical Center, Torrance, CA, USA.
Rich SS; Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA.
Rotter JI; The Institute for Translational Genomics and Population Sciences, Department of Pediatrics, The Lundquist Institute for Biomedical Innovation at Harbor-UCLA Medical Center, Torrance, CA, USA.
Haussler D; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.; Howard Hughes Medical Institute, University of California, Santa Cruz, CA, USA.
Garrison E; Department of Genetics, Genomics, and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA.
Paten B; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.; Pokaż więcej
Źródło:: Science (New York, N.Y.) [Science] 2021 Dec 17; Vol. 374 (6574), pp. abg8871. Date of Electronic Publication: 2021 Dec 17.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:: Genetic Variation*
Genome, Human*
Genotyping Techniques*
Genomics/*methods
Algorithms ; Alleles ; Computational Biology ; Genome, Fungal ; Genotype ; Haplotypes ; High-Throughput Nucleotide Sequencing ; Humans ; Polymorphism, Single Nucleotide ; Quantitative Trait Loci ; Saccharomyces/genetics ; Saccharomyces cerevisiae/genetics ; Sequence Analysis, DNA
SCR Organism:: Saccharomyces paradoxus

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Skocz do pozycji: 15.

Tytuł:: Efficient nested-PCR-based method development for detection and genotype identification of Acanthamoeba from a small volume of aquatic environmental sample.
Autorzy:: Hsu TK; Department of Ophthalmology, Cheng Hsin General Hospital, Taipei, Taiwan.; School of Medicine, National Yang Ming Chiao Tung University, Hsinchu, Taiwan.
Chen JS; Department of Medical Research, E-Da Hospital, Kaohsiung, Taiwan.; Department of Earth and Environmental Sciences, National Chung Cheng University, No. 168, University Road, Minhsiung, Chiayi County, 621, Taiwan.
Tsai HC; Department of Psychiatry, School of Medicine, Tzu Chi University, Hualien, Taiwan.; Department of Psychiatry, Tzu-Chi General Hospital, Hualien, Taiwan.
Tao CW; Section of Respiratory Therapy, Cheng Hsin General Hospital, Taipei, Taiwan.
Yang YY; Department of Laboratory, Show Chwan Memorial Hospital, Changhua, Taiwan.
Tseng YC; Section of Respiratory Therapy, Cheng Hsin General Hospital, Taipei, Taiwan.
Kuo YJ; Department of Orthopedic Surgery, Wan Fang Hospital, Taipei Medical University, Taipei, Taiwan.
Ji DD; Department of Tropical Medicine, National Yang Ming Chiao Tung University, Hsinchu, Taiwan.
Rathod J; Department of Earth Sciences, National Cheng Kung University, Tainan, Taiwan.
Hsu BM; Department of Earth and Environmental Sciences, National Chung Cheng University, No. 168, University Road, Minhsiung, Chiayi County, 621, Taiwan. .; Center for Innovative on Aging Society (CIRAS), National Chung Cheng University, No. 168, University Road, Minhsiung, Chiayi County, 621, Taiwan. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2021 Nov 05; Vol. 11 (1), pp. 21740. Date of Electronic Publication: 2021 Nov 05.
Typ publikacji:: Evaluation Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Genotyping Techniques*
Acanthamoeba/*isolation & purification
Environmental Monitoring/*methods
Polymerase Chain Reaction/*methods
Rivers/*parasitology
Acanthamoeba/genetics

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Skocz do pozycji: 16.

Tytuł:: A new mouse SNP genotyping assay for speed congenics: combining flexibility, affordability, and power.
Autorzy:: Andrews KR; Institute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, Moscow, ID, 83844, USA. .
Hunter SS; Institute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, Moscow, ID, 83844, USA.
Torrevillas BK; Department of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA.
Céspedes N; Department of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA.
Garrison SM; Department of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA.
Strickland J; Department of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA.
Wagers D; Department of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA.
Hansten G; Department of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA.
New DD; Institute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, Moscow, ID, 83844, USA.
Fagnan MW; Institute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho, Moscow, ID, 83844, USA.
Luckhart S; Department of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA. .; Department of Biological Sciences, University of Idaho, Moscow, ID, 83844, USA. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2021 May 24; Vol. 22 (1), pp. 378. Date of Electronic Publication: 2021 May 24.
Typ publikacji:: Journal Article
MeSH Terms:: Genotyping Techniques*
Polymorphism, Single Nucleotide*
Animals ; Costs and Cost Analysis ; Genotype ; Mice ; Mice, Inbred BALB C ; Mice, Inbred C57BL

Czasopismo naukowe

na półce

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Skocz do pozycji: 17.

Tytuł:: Investigations of sequencing data and sample type on HLA class Ia typing with different computational tools.
Autorzy:: Yi J; Cancer Translational Research Institute, YuceBio Technology Co., Ltd., Shenzhen, China.
Chen L; Cancer Translational Research Institute, YuceBio Technology Co., Ltd., Shenzhen, China.
Xiao Y; Cancer Translational Research Institute, YuceBio Technology Co., Ltd., Shenzhen, China.
Zhao Z; Cancer Translational Research Institute, YuceBio Technology Co., Ltd., Shenzhen, China.
Su X; Yucebio Cancer Translational Research Institute and Chief Medical Officer for Yucebio Technology Co.; Pokaż więcej
Źródło:: Briefings in bioinformatics [Brief Bioinform] 2021 May 20; Vol. 22 (3).
Typ publikacji:: Journal Article
MeSH Terms:: Genotyping Techniques*
Histocompatibility Testing*
RNA-Seq*
Software*
HLA Antigens/*genetics
Humans

Czasopismo naukowe

na półce

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Skocz do pozycji: 18.

Tytuł:: Standardization of a SNP panel for parentage verification and identification in the domestic cat (Felis silvestris catus).
Autorzy:: de Groot M; MolGen, Traverse 2, Veenendaal, Utrecht, 3905NL, The Netherlands.
Anderson H; Wisdom Health, Helsinki, 00290, Finland.
Bauer H; Laboklin GMBH & Co. KG, Bad Kissingen, 97688, Germany.
Bauguil C; Aveyron Labo, Rodez, 12031, France.
Bellone RR; Veterinary Genetics Laboratory, School of Veterinary Medicine, University of California, Davis, CA, 95616, USA.; Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, CA, 95616, USA.
Brugidou R; Aveyron Labo, Rodez, 12031, France.
Buckley RM; Department of Veterinary Medicine and Surgery, College of Veterinary Medicine, University of Missouri, Columbia, MO, 65211, USA.
Dovč P; Department of Animal Science, Biotechnical Faculty, University of Ljubljana, Ljubljana, 1000, Slovenia.
Forman O; Wisdom Health, Helsinki, 00290, Finland.
Grahn RA; Veterinary Genetics Laboratory, School of Veterinary Medicine, University of California, Davis, CA, 95616, USA.
Kock L; Neogen Genomics, Lincoln, NE, 68504, USA.
Longeri M; Department of Veterinary Medicine, University of Milan, Milan, 20133, Italy.
Mouysset-Geniez S; Aveyron Labo, Rodez, 12031, France.
Qiu J; Neogen Genomics, Lincoln, NE, 68504, USA.
Sofronidis G; Orivet Genetic Pet Care, Suite St. Kilda, Melbourne, Vic., 3182, Australia.
van der Goor LHP; VHLGenetics, Wageningen, NL, 6708 PW, The Netherlands.
Lyons LA; Department of Veterinary Medicine and Surgery, College of Veterinary Medicine, University of Missouri, Columbia, MO, 65211, USA.; Pokaż więcej
Źródło:: Animal genetics [Anim Genet] 2021 Oct; Vol. 52 (5), pp. 675-682. Date of Electronic Publication: 2021 Jun 18.
Typ publikacji:: Journal Article
MeSH Terms:: Genetic Markers*
Genotyping Techniques*/standards
Polymorphism, Single Nucleotide*
Cats/*genetics
Animals ; Breeding ; Genetics, Population ; Oligonucleotide Array Sequence Analysis/standards

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na półce

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Skocz do pozycji: 19.

Tytuł:: Examining performance and likelihood ratios for two likelihood ratio systems using the PROVEDIt dataset.
Autorzy:: Riman S; Applied Genetics Group, National Institute of Standards and Technology, Gaithersburg, Maryland, United States of America.
Iyer H; Statistical Design, Analysis, Modeling Group, National Institute of Standards and Technology, Gaithersburg, Maryland, United States of America.
Vallone PM; Applied Genetics Group, National Institute of Standards and Technology, Gaithersburg, Maryland, United States of America.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2021 Sep 17; Vol. 16 (9), pp. e0256714. Date of Electronic Publication: 2021 Sep 17 (Print Publication: 2021).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Alleles*
Genome, Human*
Genotype*
Genotyping Techniques*
Software*
DNA/*genetics
Area Under Curve ; Datasets as Topic ; Gene Frequency ; Humans ; Likelihood Functions ; Microsatellite Repeats ; ROC Curve

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na półce

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Skocz do pozycji: 20.

Tytuł:: Rapid high-resolution melting genotyping scheme for Escherichia coli based on MLST derived single nucleotide polymorphisms.
Autorzy:: Bezdicek M; Department of Internal Medicine, Hematology and Oncology, University Hospital Brno, Brno, Czech Republic.; Department of Internal Medicine, Hematology and Oncology, Masaryk University, Brno, Czech Republic.
Nykrynova M; Department of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, Czech Republic.
Sedlar K; Department of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, Czech Republic.
Kralova S; Department of Experimental Biology, Czech Collection of Microorganisms, Faculty of Science, Masaryk University, Brno, Czech Republic.
Hanslikova J; Department of Internal Medicine, Hematology and Oncology, University Hospital Brno, Brno, Czech Republic.
Komprdova A; Department of Internal Medicine, Hematology and Oncology, University Hospital Brno, Brno, Czech Republic.
Skutkova H; Department of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, Czech Republic.
Kocmanova I; Department of Clinical Microbiology and Immunology, University Hospital Brno, Brno, Czech Republic.
Mayer J; Department of Internal Medicine, Hematology and Oncology, University Hospital Brno, Brno, Czech Republic.
Lengerova M; Department of Internal Medicine, Hematology and Oncology, University Hospital Brno, Brno, Czech Republic. .; Department of Internal Medicine, Hematology and Oncology, Masaryk University, Brno, Czech Republic. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2021 Aug 16; Vol. 11 (1), pp. 16572. Date of Electronic Publication: 2021 Aug 16.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Bacterial Typing Techniques*
Genes, Bacterial*
Genotyping Techniques*
Polymorphism, Single Nucleotide*
DNA, Bacterial/*genetics
Escherichia coli/*genetics
Multilocus Sequence Typing/*methods
Base Composition ; Computer Simulation ; Czech Republic/epidemiology ; DNA Primers ; DNA, Bacterial/chemistry ; Disease Outbreaks ; Escherichia coli/classification ; Escherichia coli/isolation & purification ; Escherichia coli Infections/microbiology ; Genome, Bacterial ; Nucleic Acid Denaturation ; Polymerase Chain Reaction/methods ; Population Surveillance ; Repetitive Sequences, Nucleic Acid ; Whole Genome Sequencing

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na półce

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