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Wyświetlanie 1-10 z 10
Tytuł:
A comparative encyclopedia of DNA elements in the mouse genome.
Autorzy:
Yue F; 1] Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA. [2] Department of Biochemistry and Molecular Biology, College of Medicine, The Pennsylvania State University, Hershey, Pennsylvania 17033, USA.
Cheng Y; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Breschi A; Bioinformatics and Genomics, Centre for Genomic Regulation (CRG) and UPF, Doctor Aiguader, 88, 08003 Barcelona, Catalonia, Spain.
Vierstra J; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Wu W; Center for Comparative Genomics and Bioinformatics, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Ryba T; Department of Biological Science, 319 Stadium Drive, Florida State University, Tallahassee, Florida 32306-4295, USA.
Sandstrom R; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Ma Z; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Davis C; Functional Genomics, Cold Spring Harbor Laboratory, Bungtown Road, Cold Spring Harbor, New York 11724, USA.
Pope BD; Department of Biological Science, 319 Stadium Drive, Florida State University, Tallahassee, Florida 32306-4295, USA.
Shen Y; Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.
Pervouchine DD; Bioinformatics and Genomics, Centre for Genomic Regulation (CRG) and UPF, Doctor Aiguader, 88, 08003 Barcelona, Catalonia, Spain.
Djebali S; Bioinformatics and Genomics, Centre for Genomic Regulation (CRG) and UPF, Doctor Aiguader, 88, 08003 Barcelona, Catalonia, Spain.
Thurman RE; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Kaul R; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Rynes E; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Kirilusha A; Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.
Marinov GK; Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.
Williams BA; Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.
Trout D; Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.
Amrhein H; Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.
Fisher-Aylor K; Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.
Antoshechkin I; Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.
DeSalvo G; Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.
See LH; Functional Genomics, Cold Spring Harbor Laboratory, Bungtown Road, Cold Spring Harbor, New York 11724, USA.
Fastuca M; Functional Genomics, Cold Spring Harbor Laboratory, Bungtown Road, Cold Spring Harbor, New York 11724, USA.
Drenkow J; Functional Genomics, Cold Spring Harbor Laboratory, Bungtown Road, Cold Spring Harbor, New York 11724, USA.
Zaleski C; Functional Genomics, Cold Spring Harbor Laboratory, Bungtown Road, Cold Spring Harbor, New York 11724, USA.
Dobin A; Functional Genomics, Cold Spring Harbor Laboratory, Bungtown Road, Cold Spring Harbor, New York 11724, USA.
Prieto P; Bioinformatics and Genomics, Centre for Genomic Regulation (CRG) and UPF, Doctor Aiguader, 88, 08003 Barcelona, Catalonia, Spain.
Lagarde J; Bioinformatics and Genomics, Centre for Genomic Regulation (CRG) and UPF, Doctor Aiguader, 88, 08003 Barcelona, Catalonia, Spain.
Bussotti G; Bioinformatics and Genomics, Centre for Genomic Regulation (CRG) and UPF, Doctor Aiguader, 88, 08003 Barcelona, Catalonia, Spain.
Tanzer A; 1] Bioinformatics and Genomics, Centre for Genomic Regulation (CRG) and UPF, Doctor Aiguader, 88, 08003 Barcelona, Catalonia, Spain. [2] Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Waehringerstrasse 17/3/303, A-1090 Vienna, Austria.
Denas O; Departments of Biology and Mathematics and Computer Science, Emory University, O. Wayne Rollins Research Center, 1510 Clifton Road NE, Atlanta, Georgia 30322, USA.
Li K; Departments of Biology and Mathematics and Computer Science, Emory University, O. Wayne Rollins Research Center, 1510 Clifton Road NE, Atlanta, Georgia 30322, USA.
Bender MA; 1] Department of Pediatrics, University of Washington, Seattle, Washington 98195, USA. [2] Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
Zhang M; Basic Science Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
Byron R; Basic Science Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
Groudine MT; 1] Basic Science Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA. [2] Department of Radiation Oncology, University of Washington, Seattle, Washington 98195, USA.
McCleary D; Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.
Pham L; Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.
Ye Z; Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.
Kuan S; Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.
Edsall L; Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.
Wu YC; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts 02139, USA.
Rasmussen MD; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts 02139, USA.
Bansal MS; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts 02139, USA.
Kellis M; 1] Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts 02139, USA. [2] Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Keller CA; Center for Comparative Genomics and Bioinformatics, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Morrissey CS; Center for Comparative Genomics and Bioinformatics, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Mishra T; Center for Comparative Genomics and Bioinformatics, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Jain D; Center for Comparative Genomics and Bioinformatics, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Dogan N; Center for Comparative Genomics and Bioinformatics, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Harris RS; Center for Comparative Genomics and Bioinformatics, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Cayting P; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Kawli T; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Boyle AP; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Euskirchen G; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Kundaje A; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Lin S; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Lin Y; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Jansen C; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, California 92697, USA.
Malladi VS; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Cline MS; Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, California 95064, USA.
Erickson DT; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Kirkup VM; Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, California 95064, USA.
Learned K; Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, California 95064, USA.
Sloan CA; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Rosenbloom KR; Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, California 95064, USA.
Lacerda de Sousa B; Departments of Obstetrics/Gynecology and Pathology, and Center for Reproductive Sciences, University of California San Francisco, San Francisco, California 94143, USA.
Beal K; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Pignatelli M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Flicek P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Lian J; Yale University, Department of Genetics, PO Box 208005, 333 Cedar Street, New Haven, Connecticut 06520-8005, USA.
Kahveci T; Computer &Information Sciences &Engineering, University of Florida, Gainesville, Florida 32611, USA.
Lee D; McKusick-Nathans Institute of Genetic Medicine and Department of Biomedical Engineering, Johns Hopkins University, 733 N. Broadway, BRB 573 Baltimore, Maryland 21205, USA.
Kent WJ; Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, California 95064, USA.
Ramalho Santos M; Departments of Obstetrics/Gynecology and Pathology, and Center for Reproductive Sciences, University of California San Francisco, San Francisco, California 94143, USA.
Herrero J; 1] European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. [2] Bill Lyons Informatics Centre, UCL Cancer Institute, University College London, London WC1E 6DD, UK.
Notredame C; Bioinformatics and Genomics, Centre for Genomic Regulation (CRG) and UPF, Doctor Aiguader, 88, 08003 Barcelona, Catalonia, Spain.
Johnson A; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Vong S; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Lee K; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Bates D; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Neri F; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Diegel M; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Canfield T; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Sabo PJ; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Wilken MS; Department of Biological Structure, University of Washington, HSB I-516, 1959 NE Pacific Street, Seattle, Washington 98195, USA.
Reh TA; Department of Biological Structure, University of Washington, HSB I-516, 1959 NE Pacific Street, Seattle, Washington 98195, USA.
Giste E; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Shafer A; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Kutyavin T; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Haugen E; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Dunn D; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Reynolds AP; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Neph S; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Humbert R; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Hansen RS; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
De Bruijn M; MRC Molecular Haemotology Unit, University of Oxford, Oxford OX3 9DS, UK.
Selleri L; Department of Cell and Developmental Biology, Weill Cornell Medical College, New York, New York 10065, USA.
Rudensky A; HHMI and Ludwig Center at Memorial Sloan Kettering Cancer Center, Immunology Program, Memorial Sloan Kettering Cancer Canter, New York, New York 10065, USA.
Josefowicz S; HHMI and Ludwig Center at Memorial Sloan Kettering Cancer Center, Immunology Program, Memorial Sloan Kettering Cancer Canter, New York, New York 10065, USA.
Samstein R; HHMI and Ludwig Center at Memorial Sloan Kettering Cancer Center, Immunology Program, Memorial Sloan Kettering Cancer Canter, New York, New York 10065, USA.
Eichler EE; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Orkin SH; Dana Farber Cancer Institute, Harvard Medical School, Cambridge, Massachusetts 02138, USA.
Levasseur D; University of Iowa Carver College of Medicine, Department of Internal Medicine, Iowa City, Iowa 52242, USA.
Papayannopoulou T; Division of Hematology, Department of Medicine, University of Washington, Seattle, Washington 98195, USA.
Chang KH; University of Iowa Carver College of Medicine, Department of Internal Medicine, Iowa City, Iowa 52242, USA.
Skoultchi A; Department of Cell Biology, Albert Einstein College of Medicine, Bronx, New York 10461, USA.
Gosh S; Department of Cell Biology, Albert Einstein College of Medicine, Bronx, New York 10461, USA.
Disteche C; Department of Pathology, University of Washington, Seattle, Washington 98195, USA.
Treuting P; Department of Comparative Medicine, University of Washington, Seattle, Washington 98195, USA.
Wang Y; Bioinformatics and Genomics program, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Weiss MJ; Department of Hematology, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Blobel GA; 1] Division of Hematology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania 19104, USA. [2] Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Cao X; Department of Bioengineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093, USA.
Zhong S; Department of Bioengineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093, USA.
Wang T; Department of Genetics, Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, Missouri 63108, USA.
Good PJ; NHGRI, National Institutes of Health, 5635 Fishers Lane, Bethesda, Maryland 20892-9307, USA.
Lowdon RF; NHGRI, National Institutes of Health, 5635 Fishers Lane, Bethesda, Maryland 20892-9307, USA.
Adams LB; NHGRI, National Institutes of Health, 5635 Fishers Lane, Bethesda, Maryland 20892-9307, USA.
Zhou XQ; NHGRI, National Institutes of Health, 5635 Fishers Lane, Bethesda, Maryland 20892-9307, USA.
Pazin MJ; NHGRI, National Institutes of Health, 5635 Fishers Lane, Bethesda, Maryland 20892-9307, USA.
Feingold EA; NHGRI, National Institutes of Health, 5635 Fishers Lane, Bethesda, Maryland 20892-9307, USA.
Wold B; Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.
Taylor J; Departments of Biology and Mathematics and Computer Science, Emory University, O. Wayne Rollins Research Center, 1510 Clifton Road NE, Atlanta, Georgia 30322, USA.
Mortazavi A; Department of Developmental and Cell Biology, University of California, Irvine, Irvine, California 92697, USA.
Weissman SM; Yale University, Department of Genetics, PO Box 208005, 333 Cedar Street, New Haven, Connecticut 06520-8005, USA.
Stamatoyannopoulos JA; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Snyder MP; Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, California 94305, USA.
Guigo R; Bioinformatics and Genomics, Centre for Genomic Regulation (CRG) and UPF, Doctor Aiguader, 88, 08003 Barcelona, Catalonia, Spain.
Gingeras TR; Functional Genomics, Cold Spring Harbor Laboratory, Bungtown Road, Cold Spring Harbor, New York 11724, USA.
Gilbert DM; Department of Biological Science, 319 Stadium Drive, Florida State University, Tallahassee, Florida 32306-4295, USA.
Hardison RC; Center for Comparative Genomics and Bioinformatics, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Beer MA; McKusick-Nathans Institute of Genetic Medicine and Department of Biomedical Engineering, Johns Hopkins University, 733 N. Broadway, BRB 573 Baltimore, Maryland 21205, USA.
Ren B; Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.
Pokaż więcej
Corporate Authors:
Mouse ENCODE Consortium
Źródło:
Nature [Nature] 2014 Nov 20; Vol. 515 (7527), pp. 355-64.
Typ publikacji:
Comparative Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Genomics*
Molecular Sequence Annotation*
Genome/*genetics
Mice/*genetics
Animals ; Cell Lineage/genetics ; Chromatin/genetics ; Chromatin/metabolism ; Conserved Sequence/genetics ; DNA Replication/genetics ; Deoxyribonuclease I/metabolism ; Gene Expression Regulation/genetics ; Gene Regulatory Networks/genetics ; Genome-Wide Association Study ; Humans ; RNA/genetics ; Regulatory Sequences, Nucleic Acid/genetics ; Species Specificity ; Transcription Factors/metabolism ; Transcriptome/genetics
Czasopismo naukowe
Tytuł:
Comparative analysis of the transcriptome across distant species.
Autorzy:
Gerstein MB; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [3] Department of Computer Science, Yale University, 51 Prospect Street, New Haven, Connecticut 06511, USA [4] [5].
Rozowsky J; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [3].
Yan KK; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [3].
Wang D; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [3].
Cheng C; 1] Department of Genetics, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire 03755, USA [2] Institute for Quantitative Biomedical Sciences, Norris Cotton Cancer Center, Geisel School of Medicine at Dartmouth, Lebanon, New Hampshire 03766, USA [3].
Brown JB; 1] Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA [2] Department of Statistics, University of California, Berkeley, 367 Evans Hall, Berkeley, California 94720-3860, USA [3].
Davis CA; 1] Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA [2].
Hillier L; 1] Department of Genome Sciences and University of Washington School of Medicine, William H. Foege Building S350D, 1705 Northeast Pacific Street, Box 355065 Seattle, Washington 98195-5065, USA [2].
Sisu C; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [3].
Li JJ; 1] Department of Statistics, University of California, Berkeley, 367 Evans Hall, Berkeley, California 94720-3860, USA [2] Department of Statistics, University of California, Los Angeles, California 90095-1554, USA [3] Department of Human Genetics, University of California, Los Angeles, California 90095-7088, USA [4].
Pei B; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [3].
Harmanci AO; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [3].
Duff MO; 1] Department of Genetics and Developmental Biology, Institute for Systems Genomics, University of Connecticut Health Center, 400 Farmington Avenue, Farmington, Connecticut 06030, USA [2].
Djebali S; 1] Centre for Genomic Regulation, Doctor Aiguader 88, 08003 Barcelona, Catalonia, Spain [2] Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, 08003 Barcelona, Catalonia, Spain [3].
Alexander RP; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA.
Alver BH; Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, Massachusetts 02115, USA.
Auerbach R; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA.
Bell K; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.
Bickel PJ; Department of Statistics, University of California, Berkeley, 367 Evans Hall, Berkeley, California 94720-3860, USA.
Boeck ME; Department of Genome Sciences and University of Washington School of Medicine, William H. Foege Building S350D, 1705 Northeast Pacific Street, Box 355065 Seattle, Washington 98195-5065, USA.
Boley NP; 1] Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA [2] Department of Biostatistics, University of California, Berkeley, 367 Evans Hall, Berkeley, California 94720-3860, USA.
Booth BW; Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Cherbas L; 1] Department of Biology, Indiana University, 1001 East 3rd Street, Bloomington, Indiana 47405-7005, USA [2] Center for Genomics and Bioinformatics, Indiana University, 1001 East 3rd Street, Bloomington, Indiana 47405-7005, USA.
Cherbas P; 1] Department of Biology, Indiana University, 1001 East 3rd Street, Bloomington, Indiana 47405-7005, USA [2] Center for Genomics and Bioinformatics, Indiana University, 1001 East 3rd Street, Bloomington, Indiana 47405-7005, USA.
Di C; MOE Key Lab of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Dobin A; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.
Drenkow J; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.
Ewing B; Department of Genome Sciences and University of Washington School of Medicine, William H. Foege Building S350D, 1705 Northeast Pacific Street, Box 355065 Seattle, Washington 98195-5065, USA.
Fang G; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA.
Fastuca M; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.
Feingold EA; National Human Genome Research Institute, National Institutes of Health, 5635 Fishers Lane, Bethesda, Maryland 20892-9307, USA.
Frankish A; Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Gao G; MOE Key Lab of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Good PJ; National Human Genome Research Institute, National Institutes of Health, 5635 Fishers Lane, Bethesda, Maryland 20892-9307, USA.
Guigó R; 1] Centre for Genomic Regulation, Doctor Aiguader 88, 08003 Barcelona, Catalonia, Spain [2] Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, 08003 Barcelona, Catalonia, Spain.
Hammonds A; Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Harrow J; Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Hoskins RA; Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Howald C; 1] Center for Integrative Genomics, University of Lausanne, Genopode building, Lausanne 1015, Switzerland [2] Swiss Institute of Bioinformatics, Genopode building, Lausanne 1015, Switzerland.
Hu L; MOE Key Lab of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Huang H; Department of Statistics, University of California, Berkeley, 367 Evans Hall, Berkeley, California 94720-3860, USA.
Hubbard TJ; 1] Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK [2] Medical and Molecular Genetics, King's College London, London WC2R 2LS, UK.
Huynh C; Department of Genome Sciences and University of Washington School of Medicine, William H. Foege Building S350D, 1705 Northeast Pacific Street, Box 355065 Seattle, Washington 98195-5065, USA.
Jha S; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.
Kasper D; Department of Genetics, Yale University School of Medicine, New Haven, Connecticut 06520-8005, USA.
Kato M; Department of Molecular, Cellular and Developmental Biology, PO Box 208103, Yale University, New Haven, Connecticut 06520, USA.
Kaufman TC; Department of Biology, Indiana University, 1001 East 3rd Street, Bloomington, Indiana 47405-7005, USA.
Kitchen RR; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA.
Ladewig E; Sloan-Kettering Institute, 1275 York Avenue, Box 252, New York, New York 10065, USA.
Lagarde J; 1] Centre for Genomic Regulation, Doctor Aiguader 88, 08003 Barcelona, Catalonia, Spain [2] Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, 08003 Barcelona, Catalonia, Spain.
Lai E; Sloan-Kettering Institute, 1275 York Avenue, Box 252, New York, New York 10065, USA.
Leng J; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA.
Lu Z; MOE Key Lab of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.
MacCoss M; Department of Genome Sciences and University of Washington School of Medicine, William H. Foege Building S350D, 1705 Northeast Pacific Street, Box 355065 Seattle, Washington 98195-5065, USA.
May G; 1] Department of Genetics and Developmental Biology, Institute for Systems Genomics, University of Connecticut Health Center, 400 Farmington Avenue, Farmington, Connecticut 06030, USA [2] Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213 USA.
McWhirter R; Department of Cell and Developmental Biology, Vanderbilt University, 465 21st Avenue South, Nashville, Tennessee 37232-8240, USA.
Merrihew G; Department of Genome Sciences and University of Washington School of Medicine, William H. Foege Building S350D, 1705 Northeast Pacific Street, Box 355065 Seattle, Washington 98195-5065, USA.
Miller DM; Department of Cell and Developmental Biology, Vanderbilt University, 465 21st Avenue South, Nashville, Tennessee 37232-8240, USA.
Mortazavi A; 1] Developmental and Cell Biology, University of California, Irvine, California 92697, USA [2] Center for Complex Biological Systems, University of California, Irvine, California 92697, USA.
Murad R; 1] Developmental and Cell Biology, University of California, Irvine, California 92697, USA [2] Center for Complex Biological Systems, University of California, Irvine, California 92697, USA.
Oliver B; Section of Developmental Genomics, Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892, USA.
Olson S; Department of Genetics and Developmental Biology, Institute for Systems Genomics, University of Connecticut Health Center, 400 Farmington Avenue, Farmington, Connecticut 06030, USA.
Park PJ; Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, Massachusetts 02115, USA.
Pazin MJ; National Human Genome Research Institute, National Institutes of Health, 5635 Fishers Lane, Bethesda, Maryland 20892-9307, USA.
Perrimon N; 1] Department of Genetics and Drosophila RNAi Screening Center, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA [2] Howard Hughes Medical Institute, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.
Pervouchine D; 1] Centre for Genomic Regulation, Doctor Aiguader 88, 08003 Barcelona, Catalonia, Spain [2] Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, 08003 Barcelona, Catalonia, Spain.
Reinke V; Department of Genetics, Yale University School of Medicine, New Haven, Connecticut 06520-8005, USA.
Reymond A; Center for Integrative Genomics, University of Lausanne, Genopode building, Lausanne 1015, Switzerland.
Robinson G; Department of Statistics, University of California, Berkeley, 367 Evans Hall, Berkeley, California 94720-3860, USA.
Samsonova A; 1] Department of Genetics and Drosophila RNAi Screening Center, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA [2] Howard Hughes Medical Institute, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.
Saunders GI; 1] Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK [2] European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.
Schlesinger F; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.
Sethi A; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA.
Slack FJ; Department of Molecular, Cellular and Developmental Biology, PO Box 208103, Yale University, New Haven, Connecticut 06520, USA.
Spencer WC; Department of Cell and Developmental Biology, Vanderbilt University, 465 21st Avenue South, Nashville, Tennessee 37232-8240, USA.
Stoiber MH; 1] Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA [2] Department of Biostatistics, University of California, Berkeley, 367 Evans Hall, Berkeley, California 94720-3860, USA.
Strasbourger P; Department of Genome Sciences and University of Washington School of Medicine, William H. Foege Building S350D, 1705 Northeast Pacific Street, Box 355065 Seattle, Washington 98195-5065, USA.
Tanzer A; 1] Bioinformatics and Genomics Programme, Center for Genomic Regulation, Universitat Pompeu Fabra (CRG-UPF), 08003 Barcelona, Catalonia, Spain [2] Institute for Theoretical Chemistry, Theoretical Biochemistry Group (TBI), University of Vienna, Währingerstrasse 17/3/303, A-1090 Vienna, Austria.
Thompson OA; Department of Genome Sciences and University of Washington School of Medicine, William H. Foege Building S350D, 1705 Northeast Pacific Street, Box 355065 Seattle, Washington 98195-5065, USA.
Wan KH; Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Wang G; Department of Genetics, Yale University School of Medicine, New Haven, Connecticut 06520-8005, USA.
Wang H; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.
Watkins KL; Department of Cell and Developmental Biology, Vanderbilt University, 465 21st Avenue South, Nashville, Tennessee 37232-8240, USA.
Wen J; Sloan-Kettering Institute, 1275 York Avenue, Box 252, New York, New York 10065, USA.
Wen K; MOE Key Lab of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Xue C; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.
Yang L; 1] Department of Genetics and Developmental Biology, Institute for Systems Genomics, University of Connecticut Health Center, 400 Farmington Avenue, Farmington, Connecticut 06030, USA [2] Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China.
Yip K; 1] Hong Kong Bioinformatics Centre, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong [2] 5 CUHK-BGI Innovation Institute of Trans-omics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.
Zaleski C; Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.
Zhang Y; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA.
Zheng H; 1] Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA [2] Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, Connecticut 06520, USA.
Brenner SE; 1] Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, USA [2] Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA [3].
Graveley BR; 1] Department of Genetics and Developmental Biology, Institute for Systems Genomics, University of Connecticut Health Center, 400 Farmington Avenue, Farmington, Connecticut 06030, USA [2].
Celniker SE; 1] Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA [2].
Gingeras TR; 1] Functional Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA [2].
Waterston R; 1] Department of Genome Sciences and University of Washington School of Medicine, William H. Foege Building S350D, 1705 Northeast Pacific Street, Box 355065 Seattle, Washington 98195-5065, USA [2].
Pokaż więcej
Źródło:
Nature [Nature] 2014 Aug 28; Vol. 512 (7515), pp. 445-8.
Typ publikacji:
Comparative Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Gene Expression Profiling*
Caenorhabditis elegans/*genetics
Drosophila melanogaster/*genetics
Transcriptome/*genetics
Animals ; Caenorhabditis elegans/embryology ; Caenorhabditis elegans/growth & development ; Chromatin/genetics ; Cluster Analysis ; Drosophila melanogaster/growth & development ; Gene Expression Regulation, Developmental/genetics ; Histones/metabolism ; Humans ; Larva/genetics ; Larva/growth & development ; Models, Genetic ; Molecular Sequence Annotation ; Promoter Regions, Genetic/genetics ; Pupa/genetics ; Pupa/growth & development ; RNA, Untranslated/genetics ; Sequence Analysis, RNA
Czasopismo naukowe
Tytuł:
Comparative analysis of metazoan chromatin organization.
Autorzy:
Ho JW; 1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [3] [4] Victor Chang Cardiac Research Institute and The University of New South Wales, Sydney, New South Wales 2052, Australia (J.W.K.H.); Department of Biochemistry, University at Buffalo, Buffalo, New York 14203, USA (T.L.); Department of Molecular Biology and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08540, USA (K.I., T.E.J.); Department of Human Genetics, University of Chicago, Chicago, Illinois 06037, USA (J.D.L.); Division of Genomic Technologies, Center for Life Science Technologies, RIKEN, Yokohama 230-0045, Japan (A.M.); Department of Genetics, Department of Computer Science, Stanford University, Stanford, California 94305, USA (A.K.); Department of Biology, The University of Alabama at Birmingham, Birmingham, Alabama 35294, USA (N.C.R.).
Jung YL; 1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [3].
Liu T; 1] Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA [2] Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, 450 Brookline Avenue, Boston, Massachusetts 02215, USA [3] [4] Victor Chang Cardiac Research Institute and The University of New South Wales, Sydney, New South Wales 2052, Australia (J.W.K.H.); Department of Biochemistry, University at Buffalo, Buffalo, New York 14203, USA (T.L.); Department of Molecular Biology and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08540, USA (K.I., T.E.J.); Department of Human Genetics, University of Chicago, Chicago, Illinois 06037, USA (J.D.L.); Division of Genomic Technologies, Center for Life Science Technologies, RIKEN, Yokohama 230-0045, Japan (A.M.); Department of Genetics, Department of Computer Science, Stanford University, Stanford, California 94305, USA (A.K.); Department of Biology, The University of Alabama at Birmingham, Birmingham, Alabama 35294, USA (N.C.R.).
Alver BH; Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Lee S; Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Ikegami K; 1] Department of Biology and Carolina Center for Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA [2] Victor Chang Cardiac Research Institute and The University of New South Wales, Sydney, New South Wales 2052, Australia (J.W.K.H.); Department of Biochemistry, University at Buffalo, Buffalo, New York 14203, USA (T.L.); Department of Molecular Biology and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08540, USA (K.I., T.E.J.); Department of Human Genetics, University of Chicago, Chicago, Illinois 06037, USA (J.D.L.); Division of Genomic Technologies, Center for Life Science Technologies, RIKEN, Yokohama 230-0045, Japan (A.M.); Department of Genetics, Department of Computer Science, Stanford University, Stanford, California 94305, USA (A.K.); Department of Biology, The University of Alabama at Birmingham, Birmingham, Alabama 35294, USA (N.C.R.).
Sohn KA; 1] Department of Information and Computer Engineering, Ajou University, Suwon 443-749, Korea [2] Systems Biomedical Informatics Research Center, College of Medicine, Seoul National University, Seoul 110-799, Korea.
Minoda A; 1] Department of Genome Dynamics, Life Sciences Division, Lawrence Berkeley National Lab, Berkeley, California 94720, USA [2] Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California 94720, USA [3] Victor Chang Cardiac Research Institute and The University of New South Wales, Sydney, New South Wales 2052, Australia (J.W.K.H.); Department of Biochemistry, University at Buffalo, Buffalo, New York 14203, USA (T.L.); Department of Molecular Biology and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08540, USA (K.I., T.E.J.); Department of Human Genetics, University of Chicago, Chicago, Illinois 06037, USA (J.D.L.); Division of Genomic Technologies, Center for Life Science Technologies, RIKEN, Yokohama 230-0045, Japan (A.M.); Department of Genetics, Department of Computer Science, Stanford University, Stanford, California 94305, USA (A.K.); Department of Biology, The University of Alabama at Birmingham, Birmingham, Alabama 35294, USA (N.C.R.).
Tolstorukov MY; 1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [3] Department of Molecular Biology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA.
Appert A; The Gurdon Institute and Department of Genetics, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK.
Parker SC; 1] National Institute of General Medical Sciences, National Institutes of Health, Bethesda, Maryland 20892, USA [2] National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Gu T; Department of Biology, Washington University in St. Louis, St. Louis, Missouri 63130, USA.
Kundaje A; 1] Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA [2] Broad Institute, Cambridge, Massachusetts 02141, USA [3] Victor Chang Cardiac Research Institute and The University of New South Wales, Sydney, New South Wales 2052, Australia (J.W.K.H.); Department of Biochemistry, University at Buffalo, Buffalo, New York 14203, USA (T.L.); Department of Molecular Biology and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08540, USA (K.I., T.E.J.); Department of Human Genetics, University of Chicago, Chicago, Illinois 06037, USA (J.D.L.); Division of Genomic Technologies, Center for Life Science Technologies, RIKEN, Yokohama 230-0045, Japan (A.M.); Department of Genetics, Department of Computer Science, Stanford University, Stanford, California 94305, USA (A.K.); Department of Biology, The University of Alabama at Birmingham, Birmingham, Alabama 35294, USA (N.C.R.).
Riddle NC; 1] Department of Biology, Washington University in St. Louis, St. Louis, Missouri 63130, USA [2] Victor Chang Cardiac Research Institute and The University of New South Wales, Sydney, New South Wales 2052, Australia (J.W.K.H.); Department of Biochemistry, University at Buffalo, Buffalo, New York 14203, USA (T.L.); Department of Molecular Biology and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08540, USA (K.I., T.E.J.); Department of Human Genetics, University of Chicago, Chicago, Illinois 06037, USA (J.D.L.); Division of Genomic Technologies, Center for Life Science Technologies, RIKEN, Yokohama 230-0045, Japan (A.M.); Department of Genetics, Department of Computer Science, Stanford University, Stanford, California 94305, USA (A.K.); Department of Biology, The University of Alabama at Birmingham, Birmingham, Alabama 35294, USA (N.C.R.).
Bishop E; 1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Program in Bioinformatics, Boston University, Boston, Massachusetts 02215, USA.
Egelhofer TA; Department of Molecular, Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, California 95064, USA.
Hu SS; Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai 200092, China.
Alekseyenko AA; 1] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Rechtsteiner A; Department of Molecular, Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, California 95064, USA.
Asker D; 1] Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, New Jersey 08854, USA [2] Food Science and Technology Department, Faculty of Agriculture, Alexandria University, 21545 El-Shatby, Alexandria, Egypt.
Belsky JA; Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, North Carolina 27710, USA.
Bowman SK; Department of Molecular Biology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA.
Chen QB; Department of Biology and Carolina Center for Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.
Chen RA; The Gurdon Institute and Department of Genetics, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK.
Day DS; 1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Harvard/MIT Division of Health Sciences and Technology, Cambridge, Massachusetts 02139, USA.
Dong Y; The Gurdon Institute and Department of Genetics, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK.
Dose AC; Department of Anatomy Physiology and Cell Biology, University of California Davis, Davis, California 95616, USA.
Duan X; Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai 200092, China.
Epstein CB; Broad Institute, Cambridge, Massachusetts 02141, USA.
Ercan S; 1] Department of Biology and Carolina Center for Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA [2] Department of Biology, Center for Genomics and Systems Biology, New York University, New York, New York 10003, USA.
Feingold EA; National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Ferrari F; Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Garrigues JM; Department of Molecular, Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, California 95064, USA.
Gehlenborg N; 1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Broad Institute, Cambridge, Massachusetts 02141, USA.
Good PJ; National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Haseley P; 1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA.
He D; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California 94720, USA.
Herrmann M; The Gurdon Institute and Department of Genetics, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK.
Hoffman MM; Princess Margaret Cancer Centre, Toronto, Ontario M6G 1L7, Canada.
Jeffers TE; 1] Department of Biology and Carolina Center for Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA [2] Victor Chang Cardiac Research Institute and The University of New South Wales, Sydney, New South Wales 2052, Australia (J.W.K.H.); Department of Biochemistry, University at Buffalo, Buffalo, New York 14203, USA (T.L.); Department of Molecular Biology and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08540, USA (K.I., T.E.J.); Department of Human Genetics, University of Chicago, Chicago, Illinois 06037, USA (J.D.L.); Division of Genomic Technologies, Center for Life Science Technologies, RIKEN, Yokohama 230-0045, Japan (A.M.); Department of Genetics, Department of Computer Science, Stanford University, Stanford, California 94305, USA (A.K.); Department of Biology, The University of Alabama at Birmingham, Birmingham, Alabama 35294, USA (N.C.R.).
Kharchenko PV; Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Kolasinska-Zwierz P; The Gurdon Institute and Department of Genetics, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK.
Kotwaliwale CV; 1] Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California 94720, USA [2] Howard Hughes Medical Institute, Chevy Chase, Maryland 20815, USA.
Kumar N; 1] Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA [2] Broad Institute, Cambridge, Massachusetts 02141, USA.
Langley SA; 1] Department of Genome Dynamics, Life Sciences Division, Lawrence Berkeley National Lab, Berkeley, California 94720, USA [2] Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California 94720, USA.
Larschan EN; Department of Molecular Biology, Cellular Biology and Biochemistry, Brown University, Providence, Rhode Island 02912, USA.
Latorre I; The Gurdon Institute and Department of Genetics, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK.
Libbrecht MW; Department of Computer Science and Engineering, University of Washington, Seattle, Washington 98195, USA.
Lin X; Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai 200092, China.
Park R; 1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Program in Bioinformatics, Boston University, Boston, Massachusetts 02215, USA.
Pazin MJ; National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Pham HN; 1] Department of Genome Dynamics, Life Sciences Division, Lawrence Berkeley National Lab, Berkeley, California 94720, USA [2] Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California 94720, USA [3] Howard Hughes Medical Institute, Chevy Chase, Maryland 20815, USA.
Plachetka A; 1] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Qin B; Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai 200092, China.
Schwartz YB; 1] Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, New Jersey 08854, USA [2] Department of Molecular Biology, Umea University, 901 87 Umea, Sweden.
Shoresh N; Broad Institute, Cambridge, Massachusetts 02141, USA.
Stempor P; The Gurdon Institute and Department of Genetics, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK.
Vielle A; The Gurdon Institute and Department of Genetics, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK.
Wang C; Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai 200092, China.
Whittle CM; 1] Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California 94720, USA [2] Howard Hughes Medical Institute, Chevy Chase, Maryland 20815, USA.
Xue H; 1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA.
Kingston RE; Department of Molecular Biology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA.
Kim JH; 1] Systems Biomedical Informatics Research Center, College of Medicine, Seoul National University, Seoul 110-799, Korea [2] Seoul National University Biomedical Informatics, Division of Biomedical Informatics, College of Medicine, Seoul National University, Seoul 110-799, Korea.
Bernstein BE; 1] Broad Institute, Cambridge, Massachusetts 02141, USA [2] Howard Hughes Medical Institute, Chevy Chase, Maryland 20815, USA [3] Department of Pathology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA.
Dernburg AF; 1] Department of Genome Dynamics, Life Sciences Division, Lawrence Berkeley National Lab, Berkeley, California 94720, USA [2] Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California 94720, USA [3] Howard Hughes Medical Institute, Chevy Chase, Maryland 20815, USA.
Pirrotta V; Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, New Jersey 08854, USA.
Kuroda MI; 1] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Noble WS; 1] Department of Computer Science and Engineering, University of Washington, Seattle, Washington 98195, USA [2] Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Tullius TD; 1] Program in Bioinformatics, Boston University, Boston, Massachusetts 02215, USA [2] Department of Chemistry, Boston University, Boston, Massachusetts 02215, USA.
Kellis M; 1] Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA [2] Broad Institute, Cambridge, Massachusetts 02141, USA.
MacAlpine DM; Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, North Carolina 27710, USA.
Strome S; Department of Molecular, Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, California 95064, USA.
Elgin SC; Department of Biology, Washington University in St. Louis, St. Louis, Missouri 63130, USA.
Liu XS; 1] Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA [2] Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, 450 Brookline Avenue, Boston, Massachusetts 02215, USA [3] Broad Institute, Cambridge, Massachusetts 02141, USA.
Lieb JD; 1] Department of Biology and Carolina Center for Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA [2] Victor Chang Cardiac Research Institute and The University of New South Wales, Sydney, New South Wales 2052, Australia (J.W.K.H.); Department of Biochemistry, University at Buffalo, Buffalo, New York 14203, USA (T.L.); Department of Molecular Biology and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08540, USA (K.I., T.E.J.); Department of Human Genetics, University of Chicago, Chicago, Illinois 06037, USA (J.D.L.); Division of Genomic Technologies, Center for Life Science Technologies, RIKEN, Yokohama 230-0045, Japan (A.M.); Department of Genetics, Department of Computer Science, Stanford University, Stanford, California 94305, USA (A.K.); Department of Biology, The University of Alabama at Birmingham, Birmingham, Alabama 35294, USA (N.C.R.).
Ahringer J; The Gurdon Institute and Department of Genetics, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK.
Karpen GH; 1] Department of Genome Dynamics, Life Sciences Division, Lawrence Berkeley National Lab, Berkeley, California 94720, USA [2] Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California 94720, USA.
Park PJ; 1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [3] Informatics Program, Children's Hospital, Boston, Massachusetts 02215, USA.
Pokaż więcej
Źródło:
Nature [Nature] 2014 Aug 28; Vol. 512 (7515), pp. 449-52.
Typ publikacji:
Comparative Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Caenorhabditis elegans/*cytology
Caenorhabditis elegans/*genetics
Chromatin/*genetics
Chromatin/*metabolism
Drosophila melanogaster/*cytology
Drosophila melanogaster/*genetics
Animals ; Cell Line ; Centromere/genetics ; Centromere/metabolism ; Chromatin/chemistry ; Chromatin Assembly and Disassembly/genetics ; DNA Replication/genetics ; Enhancer Elements, Genetic/genetics ; Epigenesis, Genetic ; Heterochromatin/chemistry ; Heterochromatin/genetics ; Heterochromatin/metabolism ; Histones/chemistry ; Histones/metabolism ; Humans ; Molecular Sequence Annotation ; Nuclear Lamina/metabolism ; Nucleosomes/chemistry ; Nucleosomes/genetics ; Nucleosomes/metabolism ; Promoter Regions, Genetic/genetics ; Species Specificity
Czasopismo naukowe
Tytuł:
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.
Autorzy:
Gerstein MB; Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA. />Lu ZJ
Van Nostrand EL
Cheng C
Arshinoff BI
Liu T
Yip KY
Robilotto R
Rechtsteiner A
Ikegami K
Alves P
Chateigner A
Perry M
Morris M
Auerbach RK
Feng X
Leng J
Vielle A
Niu W
Rhrissorrakrai K
Agarwal A
Alexander RP
Barber G
Brdlik CM
Brennan J
Brouillet JJ
Carr A
Cheung MS
Clawson H
Contrino S
Dannenberg LO
Dernburg AF
Desai A
Dick L
Dosé AC
Du J
Egelhofer T
Ercan S
Euskirchen G
Ewing B
Feingold EA
Gassmann R
Good PJ
Green P
Gullier F
Gutwein M
Guyer MS
Habegger L
Han T
Henikoff JG
Henz SR
Hinrichs A
Holster H
Hyman T
Iniguez AL
Janette J
Jensen M
Kato M
Kent WJ
Kephart E
Khivansara V
Khurana E
Kim JK
Kolasinska-Zwierz P
Lai EC
Latorre I
Leahey A
Lewis S
Lloyd P
Lochovsky L
Lowdon RF
Lubling Y
Lyne R
MacCoss M
Mackowiak SD
Mangone M
McKay S
Mecenas D
Merrihew G
Miller DM 3rd
Muroyama A
Murray JI
Ooi SL
Pham H
Phippen T
Preston EA
Rajewsky N
Rätsch G
Rosenbaum H
Rozowsky J
Rutherford K
Ruzanov P
Sarov M
Sasidharan R
Sboner A
Scheid P
Segal E
Shin H
Shou C
Slack FJ
Slightam C
Smith R
Spencer WC
Stinson EO
Taing S
Takasaki T
Vafeados D
Voronina K
Wang G
Washington NL
Whittle CM
Wu B
Yan KK
Zeller G
Zha Z
Zhong M
Zhou X
Ahringer J
Strome S
Gunsalus KC
Micklem G
Liu XS
Reinke V
Kim SK
Hillier LW
Henikoff S
Piano F
Snyder M
Stein L
Lieb JD
Waterston RH
Pokaż więcej
Corporate Authors:
modENCODE Consortium
Źródło:
Science (New York, N.Y.) [Science] 2010 Dec 24; Vol. 330 (6012), pp. 1775-87. Date of Electronic Publication: 2010 Dec 22.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromosomes*/genetics
Chromosomes*/metabolism
Chromosomes*/ultrastructure
Gene Expression Profiling*
Gene Expression Regulation*
Genome, Helminth*
Molecular Sequence Annotation*
Caenorhabditis elegans/*genetics
Animals ; Caenorhabditis elegans/growth & development ; Caenorhabditis elegans/metabolism ; Caenorhabditis elegans Proteins/genetics ; Caenorhabditis elegans Proteins/metabolism ; Chromatin/genetics ; Chromatin/metabolism ; Chromatin/ultrastructure ; Computational Biology/methods ; Conserved Sequence ; Evolution, Molecular ; Gene Regulatory Networks ; Genes, Helminth ; Genomics/methods ; Histones/metabolism ; Models, Genetic ; RNA, Helminth/genetics ; RNA, Helminth/metabolism ; RNA, Untranslated/genetics ; RNA, Untranslated/metabolism ; Regulatory Sequences, Nucleic Acid ; Transcription Factors/genetics ; Transcription Factors/metabolism
Czasopismo naukowe
Tytuł:
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Autorzy:
Birney E
Stamatoyannopoulos JA
Dutta A
Guigó R
Gingeras TR
Margulies EH
Weng Z
Snyder M
Dermitzakis ET
Thurman RE
Kuehn MS
Taylor CM
Neph S
Koch CM
Asthana S
Malhotra A
Adzhubei I
Greenbaum JA
Andrews RM
Flicek P
Boyle PJ
Cao H
Carter NP
Clelland GK
Davis S
Day N
Dhami P
Dillon SC
Dorschner MO
Fiegler H
Giresi PG
Goldy J
Hawrylycz M
Haydock A
Humbert R
James KD
Johnson BE
Johnson EM
Frum TT
Rosenzweig ER
Karnani N
Lee K
Lefebvre GC
Navas PA
Neri F
Parker SC
Sabo PJ
Sandstrom R
Shafer A
Vetrie D
Weaver M
Wilcox S
Yu M
Collins FS
Dekker J
Lieb JD
Tullius TD
Crawford GE
Sunyaev S
Noble WS
Dunham I
Denoeud F
Reymond A
Kapranov P
Rozowsky J
Zheng D
Castelo R
Frankish A
Harrow J
Ghosh S
Sandelin A
Hofacker IL
Baertsch R
Keefe D
Dike S
Cheng J
Hirsch HA
Sekinger EA
Lagarde J
Abril JF
Shahab A
Flamm C
Fried C
Hackermüller J
Hertel J
Lindemeyer M
Missal K
Tanzer A
Washietl S
Korbel J
Emanuelsson O
Pedersen JS
Holroyd N
Taylor R
Swarbreck D
Matthews N
Dickson MC
Thomas DJ
Weirauch MT
Gilbert J
Drenkow J
Bell I
Zhao X
Srinivasan KG
Sung WK
Ooi HS
Chiu KP
Foissac S
Alioto T
Brent M
Pachter L
Tress ML
Valencia A
Choo SW
Choo CY
Ucla C
Manzano C
Wyss C
Cheung E
Clark TG
Brown JB
Ganesh M
Patel S
Tammana H
Chrast J
Henrichsen CN
Kai C
Kawai J
Nagalakshmi U
Wu J
Lian Z
Lian J
Newburger P
Zhang X
Bickel P
Mattick JS
Carninci P
Hayashizaki Y
Weissman S
Hubbard T
Myers RM
Rogers J
Stadler PF
Lowe TM
Wei CL
Ruan Y
Struhl K
Gerstein M
Antonarakis SE
Fu Y
Green ED
Karaöz U
Siepel A
Taylor J
Liefer LA
Wetterstrand KA
Good PJ
Feingold EA
Guyer MS
Cooper GM
Asimenos G
Dewey CN
Hou M
Nikolaev S
Montoya-Burgos JI
Löytynoja A
Whelan S
Pardi F
Massingham T
Huang H
Zhang NR
Holmes I
Mullikin JC
Ureta-Vidal A
Paten B
Seringhaus M
Church D
Rosenbloom K
Kent WJ
Stone EA
Batzoglou S
Goldman N
Hardison RC
Haussler D
Miller W
Sidow A
Trinklein ND
Zhang ZD
Barrera L
Stuart R
King DC
Ameur A
Enroth S
Bieda MC
Kim J
Bhinge AA
Jiang N
Liu J
Yao F
Vega VB
Lee CW
Ng P
Shahab A
Yang A
Moqtaderi Z
Zhu Z
Xu X
Squazzo S
Oberley MJ
Inman D
Singer MA
Richmond TA
Munn KJ
Rada-Iglesias A
Wallerman O
Komorowski J
Fowler JC
Couttet P
Bruce AW
Dovey OM
Ellis PD
Langford CF
Nix DA
Euskirchen G
Hartman S
Urban AE
Kraus P
Van Calcar S
Heintzman N
Kim TH
Wang K
Qu C
Hon G
Luna R
Glass CK
Rosenfeld MG
Aldred SF
Cooper SJ
Halees A
Lin JM
Shulha HP
Zhang X
Xu M
Haidar JN
Yu Y
Ruan Y
Iyer VR
Green RD
Wadelius C
Farnham PJ
Ren B
Harte RA
Hinrichs AS
Trumbower H
Clawson H
Hillman-Jackson J
Zweig AS
Smith K
Thakkapallayil A
Barber G
Kuhn RM
Karolchik D
Armengol L
Bird CP
de Bakker PI
Kern AD
Lopez-Bigas N
Martin JD
Stranger BE
Woodroffe A
Davydov E
Dimas A
Eyras E
Hallgrímsdóttir IB
Huppert J
Zody MC
Abecasis GR
Estivill X
Bouffard GG
Guan X
Hansen NF
Idol JR
Maduro VV
Maskeri B
McDowell JC
Park M
Thomas PJ
Young AC
Blakesley RW
Muzny DM
Sodergren E
Wheeler DA
Worley KC
Jiang H
Weinstock GM
Gibbs RA
Graves T
Fulton R
Mardis ER
Wilson RK
Clamp M
Cuff J
Gnerre S
Jaffe DB
Chang JL
Lindblad-Toh K
Lander ES
Koriabine M
Nefedov M
Osoegawa K
Yoshinaga Y
Zhu B
de Jong PJ
Pokaż więcej
Corporate Authors:
ENCODE Project Consortium
NISC Comparative Sequencing Program
Baylor College of Medicine Human Genome Sequencing Center
Washington University Genome Sequencing Center
Broad Institute
Children's Hospital Oakland Research Institute
Źródło:
Nature [Nature] 2007 Jun 14; Vol. 447 (7146), pp. 799-816.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Genomics*
Genome, Human/*genetics
Regulatory Sequences, Nucleic Acid/*genetics
Transcription, Genetic/*genetics
Chromatin/genetics ; Chromatin/metabolism ; Chromatin Immunoprecipitation ; Conserved Sequence/genetics ; DNA Replication ; Evolution, Molecular ; Exons/genetics ; Genetic Variation/genetics ; Heterozygote ; Histones/metabolism ; Humans ; Pilot Projects ; Protein Binding ; RNA, Messenger/genetics ; RNA, Untranslated/genetics ; Transcription Factors/metabolism ; Transcription Initiation Site
Czasopismo naukowe
Tytuł:
Bovine DNA contains a single major family of interspersed repetitive sequences.
Autorzy:
Richardson KK
Crosby RM
Good PJ
Rosen NL
Mayfield JE
Pokaż więcej
Źródło:
European journal of biochemistry [Eur J Biochem] 1986 Jan 15; Vol. 154 (2), pp. 349-54.
Typ publikacji:
Journal Article
MeSH Terms:
DNA/*analysis
Animals ; Cattle ; Cloning, Molecular ; Electrophoresis, Agar Gel ; Nucleic Acid Hybridization ; Repetitive Sequences, Nucleic Acid ; Thymus Gland/analysis
Czasopismo naukowe
    Wyświetlanie 1-10 z 10

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