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Tytuł :
Correction: Chromatin remodeler Ino80C acts independently of H2A.Z to evict promoter nucleosomes and stimulate transcription of highly expressed genes in yeast.
Autorzy :
Qiu H; Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Biernat E; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.
Govind CK; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.
Rawal Y; Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Chereji RV; Division of Developmental Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Clark DJ; Division of Developmental Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Hinnebusch AG; Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 11; Vol. 49 (1), pp. 599.
Typ publikacji :
Journal Article; Published Erratum
Czasopismo naukowe
Tytuł :
Transcriptomic Analysis of Naïve Human Embryonic Stem Cells Cultured in Three-Dimensional PEG Scaffolds.
Autorzy :
McKee C; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.; OU-WB Institute for Stem Cell and Regenerative Medicine, Rochester, MI 48309, USA.
Brown C; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.; OU-WB Institute for Stem Cell and Regenerative Medicine, Rochester, MI 48309, USA.
Bakshi S; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.; OU-WB Institute for Stem Cell and Regenerative Medicine, Rochester, MI 48309, USA.
Walker K; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.; OU-WB Institute for Stem Cell and Regenerative Medicine, Rochester, MI 48309, USA.
Govind CK; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.; OU-WB Institute for Stem Cell and Regenerative Medicine, Rochester, MI 48309, USA.
Chaudhry GR; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.; OU-WB Institute for Stem Cell and Regenerative Medicine, Rochester, MI 48309, USA.
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Źródło :
Biomolecules [Biomolecules] 2020 Dec 28; Vol. 11 (1). Date of Electronic Publication: 2020 Dec 28.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
Chromatin remodeler Ino80C acts independently of H2A.Z to evict promoter nucleosomes and stimulate transcription of highly expressed genes in yeast.
Autorzy :
Qiu H; Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Biernat E; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.
Govind CK; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.
Rawal Y; Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Chereji RV; Division of Developmental Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Clark DJ; Division of Developmental Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Hinnebusch AG; Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Sep 04; Vol. 48 (15), pp. 8408-8430.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Transcription, Genetic*
Histones/*genetics
Saccharomyces cerevisiae Proteins/*genetics
Transcriptional Activation/*genetics
Adenosine Triphosphatases/genetics ; Chromatin/genetics ; Chromatin Assembly and Disassembly/genetics ; DNA-Binding Proteins/genetics ; Gene Expression Regulation, Fungal/genetics ; Nucleosomes/genetics ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae Proteins/chemistry ; Transcription Factors/genetics
Czasopismo naukowe
Tytuł :
Mesenchymal stem cells: Cell therapy and regeneration potential.
Autorzy :
Brown C; Department of Biological Sciences, Oakland University, Rochester, MI, USA.; OU-WB Institute for Stem Cell and Regenerative Medicine, Oakland University, Rochester, MI, USA.
McKee C; Department of Biological Sciences, Oakland University, Rochester, MI, USA.; OU-WB Institute for Stem Cell and Regenerative Medicine, Oakland University, Rochester, MI, USA.
Bakshi S; Department of Biological Sciences, Oakland University, Rochester, MI, USA.; OU-WB Institute for Stem Cell and Regenerative Medicine, Oakland University, Rochester, MI, USA.
Walker K; Department of Biological Sciences, Oakland University, Rochester, MI, USA.; OU-WB Institute for Stem Cell and Regenerative Medicine, Oakland University, Rochester, MI, USA.
Hakman E; Department of Obstetrics and Gynecology, Ascension Providence Hospital, Southfield, MI, USA.
Halassy S; Department of Obstetrics and Gynecology, Ascension Providence Hospital, Southfield, MI, USA.
Svinarich D; Department of Obstetrics and Gynecology, Ascension Providence Hospital, Southfield, MI, USA.; Ascension Providence Hospital, Southfield, MI, USA.
Dodds R; Department of Obstetrics and Gynecology, Ascension Providence Hospital, Southfield, MI, USA.
Govind CK; Department of Biological Sciences, Oakland University, Rochester, MI, USA.; OU-WB Institute for Stem Cell and Regenerative Medicine, Oakland University, Rochester, MI, USA.
Chaudhry GR; Department of Biological Sciences, Oakland University, Rochester, MI, USA.; OU-WB Institute for Stem Cell and Regenerative Medicine, Oakland University, Rochester, MI, USA.
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Źródło :
Journal of tissue engineering and regenerative medicine [J Tissue Eng Regen Med] 2019 Sep; Vol. 13 (9), pp. 1738-1755. Date of Electronic Publication: 2019 Jul 25.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Mesenchymal Stem Cell Transplantation*
Regeneration*
Mesenchymal Stem Cells/*cytology
Clinical Trials as Topic ; Fetus/cytology ; Humans
Czasopismo naukowe
Tytuł :
Acetylation-Dependent Recruitment of the FACT Complex and Its Role in Regulating Pol II Occupancy Genome-Wide in Saccharomyces cerevisiae .
Autorzy :
Pathak R; Department of Biological Sciences, Oakland University, Rochester, Michigan 48085.
Singh P; Department of Biological Sciences, Oakland University, Rochester, Michigan 48085.
Ananthakrishnan S; Department of Biological Sciences, Oakland University, Rochester, Michigan 48085.
Adamczyk S; Department of Biological Sciences, Oakland University, Rochester, Michigan 48085.
Schimmel O; Department of Biological Sciences, Oakland University, Rochester, Michigan 48085.
Govind CK; Department of Biological Sciences, Oakland University, Rochester, Michigan 48085 govind@oakland.edu.
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Źródło :
Genetics [Genetics] 2018 Jul; Vol. 209 (3), pp. 743-756. Date of Electronic Publication: 2018 Apr 25.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA-Binding Proteins/*metabolism
High Mobility Group Proteins/*metabolism
RNA Polymerase II/*metabolism
Saccharomyces cerevisiae/*genetics
Saccharomyces cerevisiae Proteins/*metabolism
Transcriptional Elongation Factors/*metabolism
Acetylation ; Alcohol Dehydrogenase/genetics ; Arginase/genetics ; DNA-Binding Proteins/chemistry ; Gene Expression Regulation, Fungal ; High Mobility Group Proteins/chemistry ; Histones/metabolism ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/chemistry ; Saccharomyces cerevisiae Proteins/genetics ; Transcription, Genetic ; Transcriptional Elongation Factors/chemistry ; Transcriptional Elongation Factors/genetics
Czasopismo naukowe
Tytuł :
SWI/SNF and RSC cooperate to reposition and evict promoter nucleosomes at highly expressed genes in yeast.
Autorzy :
Rawal Y; Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892, USA.
Chereji RV; Division of Developmental Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892, USA.
Qiu H; Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892, USA.
Ananthakrishnan S; Department of Biological Science, Oakland University, Rochester, Michigan 48309, USA.
Govind CK; Department of Biological Science, Oakland University, Rochester, Michigan 48309, USA.
Clark DJ; Division of Developmental Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892, USA.
Hinnebusch AG; Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892, USA.
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Źródło :
Genes & development [Genes Dev] 2018 May 01; Vol. 32 (9-10), pp. 695-710. Date of Electronic Publication: 2018 May 21.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Chromosomal Proteins, Non-Histone/*metabolism
DNA-Binding Proteins/*metabolism
Nucleosomes/*metabolism
Saccharomyces cerevisiae/*genetics
Saccharomyces cerevisiae/*metabolism
Saccharomyces cerevisiae Proteins/*metabolism
Transcription Factors/*metabolism
Promoter Regions, Genetic/genetics ; Protein Binding ; Saccharomyces cerevisiae Proteins/genetics
Czasopismo naukowe
Tytuł :
Recruitment of Saccharomyces cerevisiae Cmr1/Ydl156w to Coding Regions Promotes Transcription Genome Wide.
Autorzy :
Jones JW; Department of Biological Sciences, Oakland University, Rochester, MI-48309, United States of America.
Singh P; Department of Biological Sciences, Oakland University, Rochester, MI-48309, United States of America.
Govind CK; Department of Biological Sciences, Oakland University, Rochester, MI-48309, United States of America.
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Źródło :
PloS one [PLoS One] 2016 Feb 05; Vol. 11 (2), pp. e0148897. Date of Electronic Publication: 2016 Feb 05 (Print Publication: 2016).
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Transcription, Genetic*
DNA-Binding Proteins/*physiology
Saccharomyces cerevisiae/*genetics
Saccharomyces cerevisiae Proteins/*physiology
Cyclin-Dependent Kinases/metabolism ; Cyclin-Dependent Kinases/physiology ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; Genome, Fungal ; Histone Code ; Histone Deacetylases/metabolism ; Histone Deacetylases/physiology ; Histones/metabolism ; Open Reading Frames ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/genetics ; Saccharomyces cerevisiae Proteins/metabolism
Czasopismo naukowe
Tytuł :
The RSC complex localizes to coding sequences to regulate Pol II and histone occupancy.
Autorzy :
Spain MM; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.
Ansari SA; Laboratory of Molecular Genetics, Wadsworth Center, NY State Department of Health, Albany, NY 12208, USA.
Pathak R; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.
Palumbo MJ; Laboratory of Molecular Genetics, Wadsworth Center, NY State Department of Health, Albany, NY 12208, USA.
Morse RH; Laboratory of Molecular Genetics, Wadsworth Center, NY State Department of Health, Albany, NY 12208, USA.
Govind CK; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA. Electronic address: govind@oakland.edu.
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Źródło :
Molecular cell [Mol Cell] 2014 Dec 04; Vol. 56 (5), pp. 653-66. Date of Electronic Publication: 2014 Nov 06.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA-Binding Proteins/*metabolism
Histones/*metabolism
RNA Polymerase II/*metabolism
Saccharomyces cerevisiae/*metabolism
Saccharomyces cerevisiae Proteins/*metabolism
Transcription Factors/*metabolism
Chromatin Assembly and Disassembly ; Gene Expression Regulation, Fungal ; Open Reading Frames ; Stress, Physiological ; Transcription, Genetic
Czasopismo naukowe
Tytuł :
Histone deacetylases and phosphorylated polymerase II C-terminal domain recruit Spt6 for cotranscriptional histone reassembly.
Autorzy :
Burugula BB; Department of Biological Sciences, Oakland University, Rochester, Michigan, USA.
Jeronimo C; Institut de recherches cliniques de Montréal, Montréal, Québec, Canada.
Pathak R; Department of Biological Sciences, Oakland University, Rochester, Michigan, USA.
Jones JW; Department of Biological Sciences, Oakland University, Rochester, Michigan, USA.
Robert F; Institut de recherches cliniques de Montréal, Montréal, Québec, Canada Département de Médecine, Faculté de Médecine, Université de Montréal, Montréal, Québec, Canada.
Govind CK; Department of Biological Sciences, Oakland University, Rochester, Michigan, USA govind@oakland.edu.
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Źródło :
Molecular and cellular biology [Mol Cell Biol] 2014 Nov 15; Vol. 34 (22), pp. 4115-29. Date of Electronic Publication: 2014 Sep 02.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Histone Deacetylases/*metabolism
Histones/*metabolism
Nuclear Proteins/*metabolism
RNA Polymerase II/*metabolism
Saccharomyces cerevisiae/*genetics
Saccharomyces cerevisiae/*metabolism
Saccharomyces cerevisiae Proteins/*metabolism
Transcriptional Elongation Factors/*metabolism
Cyclin-Dependent Kinases/metabolism ; Gene Expression Regulation, Fungal ; Genes, Fungal ; Histone Chaperones ; Phosphorylation ; Protein Interaction Maps ; Protein Kinases/metabolism ; Protein Structure, Tertiary ; RNA Polymerase II/chemistry ; Transcription, Genetic
Czasopismo naukowe
Tytuł :
Measuring dynamic changes in histone modifications and nucleosome density during activated transcription in budding yeast.
Autorzy :
Govind CK; Department of Biological Sciences, Oakland University, Rochester, MI, USA. govind@oakland.edu
Ginsburg D
Hinnebusch AG
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Źródło :
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2012; Vol. 833, pp. 15-27.
Typ publikacji :
Journal Article
MeSH Terms :
Transcription, Genetic*/drug effects
Histones/*metabolism
Molecular Biology/*methods
Nucleosomes/*metabolism
Protein Processing, Post-Translational/*genetics
Saccharomycetales/*genetics
Chemical Precipitation/drug effects ; Chromatin Immunoprecipitation ; Cross-Linking Reagents/pharmacology ; DNA, Fungal/genetics ; Nucleosomes/drug effects ; Polymerase Chain Reaction ; Protein Processing, Post-Translational/drug effects ; Saccharomycetales/cytology ; Saccharomycetales/drug effects ; Solubility/drug effects
Czasopismo naukowe
Tytuł :
A role for phosphorylated Pol II CTD in modulating transcription coupled histone dynamics.
Autorzy :
Spain MM; Department of Biological Sciences; Oakland University; Rochester, MI USA.
Govind CK
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Źródło :
Transcription [Transcription] 2011 Mar; Vol. 2 (2), pp. 78-81.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes.
Autorzy :
Govind CK; Laboratory of Gene Regulation and Development, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD 20892, USA. govind@oakland.edu
Qiu H
Ginsburg DS
Ruan C
Hofmeyer K
Hu C
Swaminathan V
Workman JL
Li B
Hinnebusch AG
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Źródło :
Molecular cell [Mol Cell] 2010 Jul 30; Vol. 39 (2), pp. 234-46.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural
MeSH Terms :
Cyclin-Dependent Kinases/*metabolism
Histone Deacetylases/*metabolism
Nucleosomes/*metabolism
Open Reading Frames/*physiology
Saccharomyces cerevisiae/*metabolism
Saccharomyces cerevisiae Proteins/*metabolism
Cyclin-Dependent Kinases/genetics ; Histone Deacetylases/genetics ; Histone-Lysine N-Methyltransferase/genetics ; Histone-Lysine N-Methyltransferase/metabolism ; Histones/genetics ; Histones/metabolism ; Methylation ; Methyltransferases/genetics ; Methyltransferases/metabolism ; Nucleosomes/genetics ; Phosphorylation/physiology ; RNA Polymerase II/genetics ; RNA Polymerase II/metabolism ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae Proteins/genetics
Czasopismo naukowe
Tytuł :
NuA4 lysine acetyltransferase Esa1 is targeted to coding regions and stimulates transcription elongation with Gcn5.
Autorzy :
Ginsburg DS; Laboratory of Gene Regulation and Development, National Institute of Child Health and Human Development, Bethesda, Maryland 20892, USA.
Govind CK
Hinnebusch AG
Pokaż więcej
Źródło :
Molecular and cellular biology [Mol Cell Biol] 2009 Dec; Vol. 29 (24), pp. 6473-87. Date of Electronic Publication: 2009 Oct 12.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural
MeSH Terms :
Transcription, Genetic*
Histone Acetyltransferases/*metabolism
Histones/*metabolism
Saccharomyces cerevisiae Proteins/*metabolism
Gene Expression Regulation, Fungal ; Histone Acetyltransferases/genetics ; Models, Genetic ; Mutation ; Open Reading Frames ; Promoter Regions, Genetic ; Protein Subunits/genetics ; Protein Subunits/metabolism ; RNA Polymerase II/genetics ; RNA Polymerase II/metabolism ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/genetics
Czasopismo naukowe
Tytuł :
Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions.
Autorzy :
Govind CK; Laboratory of Gene Regulation and Development, National Institute of Child Health and Human Development, Bethesda, MD 20892, USA.
Zhang F
Qiu H
Hofmeyer K
Hinnebusch AG
Pokaż więcej
Źródło :
Molecular cell [Mol Cell] 2007 Jan 12; Vol. 25 (1), pp. 31-42.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural
MeSH Terms :
Transcription, Genetic*
Histone Acetyltransferases/*metabolism
Nucleosomes/*metabolism
Open Reading Frames/*genetics
Saccharomyces cerevisiae/*metabolism
Saccharomyces cerevisiae Proteins/*metabolism
Acetylation ; Base Sequence ; Carrier Proteins/metabolism ; Cyclin-Dependent Kinases/metabolism ; Histone Deacetylases/metabolism ; Histones/metabolism ; Methylation ; Phosphoprotein Phosphatases ; Phosphorylation ; Phosphoserine/metabolism ; Trans-Activators/metabolism ; mRNA Cleavage and Polyadenylation Factors
Czasopismo naukowe
Tytuł :
cis-requirement for the maintenance of round spermatid-specific transcription.
Autorzy :
Acharya KK; Department of Pathology, University of Virginia Health System, P.O. Box 800904, Charlottesville, VA 22908-0904, USA.
Govind CK
Shore AN
Stoler MH
Reddi PP
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Źródło :
Developmental biology [Dev Biol] 2006 Jul 15; Vol. 295 (2), pp. 781-90. Date of Electronic Publication: 2006 May 03.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Transcription, Genetic*
Spermatids/*metabolism
Spermatogenesis/*genetics
Amino Acid Motifs ; Animals ; DNA-Binding Proteins/physiology ; Gene Silencing ; Male ; Membrane Proteins/biosynthesis ; Membrane Proteins/genetics ; Mice ; Mice, Transgenic ; Repressor Proteins ; Testis/metabolism
Czasopismo naukowe
Tytuł :
Simultaneous recruitment of coactivators by Gcn4p stimulates multiple steps of transcription in vivo.
Autorzy :
Govind CK; Laboratory of Gene Regulation and Development, National Institute of Child Health and Human Development, Bethesda, Maryland 20892, USA.
Yoon S
Qiu H
Govind S
Hinnebusch AG
Pokaż więcej
Źródło :
Molecular and cellular biology [Mol Cell Biol] 2005 Jul; Vol. 25 (13), pp. 5626-38.
Typ publikacji :
Journal Article
MeSH Terms :
Transcription, Genetic*
Transcriptional Activation*
DNA-Binding Proteins/*metabolism
Protein Kinases/*metabolism
Saccharomyces cerevisiae Proteins/*metabolism
Trans-Activators/*metabolism
Acetyltransferases/metabolism ; Cells, Cultured ; Chromatin Immunoprecipitation ; DNA-Binding Proteins/chemistry ; DNA-Binding Proteins/genetics ; Gene Expression Regulation, Fungal ; Histone Acetyltransferases ; Kinetics ; Models, Biological ; Mutation ; Open Reading Frames ; Promoter Regions, Genetic ; Protein Kinases/chemistry ; Protein Subunits/metabolism ; RNA Polymerase II/genetics ; RNA Polymerase II/metabolism ; Saccharomyces cerevisiae/cytology ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/chemistry ; Saccharomyces cerevisiae Proteins/genetics ; Sequence Deletion ; TATA-Binding Protein Associated Factors/genetics ; TATA-Binding Protein Associated Factors/metabolism ; TATA-Box Binding Protein/genetics ; TATA-Box Binding Protein/metabolism ; Trans-Activators/genetics ; Transcription Factors/genetics ; Transcription Factors/metabolism
Czasopismo naukowe

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