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Wyszukujesz frazę ""Haplotypes"" wg kryterium: Temat


Tytuł :
The population genetics characteristics of a 90 locus panel of microhaplotypes.
Autorzy :
Pakstis AJ; Department of Genetics, Yale University School of Medicine, New Haven, CT, 06520, USA.
Gandotra N; Department of Genetics, Yale University School of Medicine, New Haven, CT, 06520, USA.
Speed WC; Department of Genetics, Yale University School of Medicine, New Haven, CT, 06520, USA.
Murtha M; Department of Genetics, Yale University School of Medicine, New Haven, CT, 06520, USA.
Scharfe C; Department of Genetics, Yale University School of Medicine, New Haven, CT, 06520, USA.
Kidd KK; Department of Genetics, Yale University School of Medicine, New Haven, CT, 06520, USA. .
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Źródło :
Human genetics [Hum Genet] 2021 Dec; Vol. 140 (12), pp. 1753-1773. Date of Electronic Publication: 2021 Oct 13.
Typ publikacji :
Journal Article
MeSH Terms :
Forensic Genetics*
Haplotypes*
Polymorphism, Single Nucleotide*
Genetic Markers ; Genetics, Population ; Humans ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
A comment on estimating HLA haplotype frequencies from homozygous individuals.
Autorzy :
Nunes JM; Department of Genetics and Evolution, University of Geneva, Geneva, Switzerland.; Institute of Genetics and Genomics in Geneva (IGE3), University of Geneva, Geneva, Switzerland.
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Źródło :
International journal of immunogenetics [Int J Immunogenet] 2021 Dec; Vol. 48 (6), pp. 496-497. Date of Electronic Publication: 2021 Sep 28.
Typ publikacji :
Letter; Comment
MeSH Terms :
Haplotypes*/genetics
Gene Frequency ; HLA-DRB1 Chains/genetics ; Homozygote ; Humans
Opinia redakcyjna
Tytuł :
Evolutionary and phylogenetic analyses of the barcoding region suggest geographical relationships among Blastocystis sp., ST3 in humans.
Autorzy :
Nemati S; Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Falahati Anbaran M; School of Biology, University of Tehran, 14155-6455 Tehran, Iran; NTNU University Museum, Norwegian University of Science and Technology, Trondheim, Norway.
Mohammad Rahimi H; Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Hosseini MS; Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Aghaei S; Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Khalili N; Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Mirjalali H; Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran. Electronic address: .
Zali MR; Gastroenterology and Liver Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
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Źródło :
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [Infect Genet Evol] 2021 Dec; Vol. 96, pp. 105151. Date of Electronic Publication: 2021 Nov 18.
Typ publikacji :
Journal Article
MeSH Terms :
Evolution, Molecular*
Genes, Protozoan*
Haplotypes*
Phylogeny*
Blastocystis/*genetics
Bayes Theorem ; Biological Evolution ; DNA Barcoding, Taxonomic ; Geography
Czasopismo naukowe
Tytuł :
Should results of HLA haplotype frequency estimations be normalized?
Autorzy :
Seitz S; DKMS, Tübingen, Germany.
Lange V; DKMS Life Science Lab, Dresden, Germany.
Norman PJ; Division of Biomedical Informatics and Personalized Medicine, and Department of Immunology and Microbiology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.
Sauter J; DKMS, Tübingen, Germany.
Schmidt AH; DKMS, Tübingen, Germany.; DKMS Life Science Lab, Dresden, Germany.
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Źródło :
International journal of immunogenetics [Int J Immunogenet] 2021 Dec; Vol. 48 (6), pp. 498-499. Date of Electronic Publication: 2021 Sep 23.
Typ publikacji :
Letter; Comment
MeSH Terms :
Haplotypes*
Gene Frequency ; Homozygote ; Humans
Opinia redakcyjna
Tytuł :
New insight into the taxonomic resolution of the genus Bythotrephes Leydig (Crustacea: Cladocera) based on molecular data from Central Europe.
Autorzy :
Karpowicz M; Department of Hydrobiology, Faculty of Biology, University of Białystok, Ciołkowskiego 1J, 15-245, Białystok, Poland. .
Świsłocka M; Department of Zoology and Genetics, Faculty of Biology, University of Białystok, Ciołkowskiego 1J, 15-245, Białystok, Poland.
Moroz J; Department of Hydrobiology, Faculty of Biology, University of Białystok, Ciołkowskiego 1J, 15-245, Białystok, Poland.
Sługocki Ł; Department of Hydrobiology, Institute of Biology, University of Szczecin, Felczaka 3C, 71-712, Szczecin, Poland.
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Źródło :
Scientific reports [Sci Rep] 2021 Nov 30; Vol. 11 (1), pp. 23158. Date of Electronic Publication: 2021 Nov 30.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Haplotypes*
Cladocera/*genetics
Cladocera/*physiology
DNA, Mitochondrial/*genetics
Animal Distribution ; Animals ; Biological Evolution ; Classification ; Computational Biology ; Computer Simulation ; DNA, Mitochondrial/metabolism ; Databases, Genetic ; Finland ; Geography ; Germany ; Lakes ; Lithuania ; Netherlands ; North America ; Phylogeny ; Poland ; Russia
Czasopismo naukowe
Tytuł :
Genetic Analysis of Hexaploid Wheat ( Triticum aestivum L.) Using the Complete Sequencing of Chloroplast DNA and Haplotype Analysis of the Wknox1 Gene.
Autorzy :
Gogniashvili M; Institute of Molecular Genetics, Agricultural University of Georgia, #240 D. Aghmashenebeli Av, Tbilisi 0131, Georgia.
Matsuoka Y; Graduate School of Agricultural Science, Kobe University, Rokko, Nada, Kobe 657-8501, Japan.
Beridze T; Institute of Molecular Genetics, Agricultural University of Georgia, #240 D. Aghmashenebeli Av, Tbilisi 0131, Georgia.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2021 Nov 24; Vol. 22 (23). Date of Electronic Publication: 2021 Nov 24.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Expression Regulation, Plant*
Genome, Chloroplast*
Haplotypes*
DNA, Chloroplast/*genetics
Homeodomain Proteins/*genetics
Plant Proteins/*genetics
Triticum/*genetics
Biological Evolution ; Polymorphism, Single Nucleotide ; Polyploidy ; Triticum/growth & development
Czasopismo naukowe
Tytuł :
Features and applications of haplotypes in crop breeding.
Autorzy :
Bhat JA; National Center for Soybean Improvement, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
Yu D; National Center for Soybean Improvement, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
Bohra A; Crop Improvement Division, ICAR- Indian Institute of Pulses Research (ICAR- IIPR), Kanpur, India.
Ganie SA; Department of Biotechnology, Visva-Bharati, Santiniketan, 731235, WB, India. .
Varshney RK; Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, India. .; State Agricultural Biotechnology Centre, Centre for Crop & Food Research Innovation, Food Futures Institute, Murdoch University, Murdoch, WA, Australia. .
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Źródło :
Communications biology [Commun Biol] 2021 Nov 04; Vol. 4 (1), pp. 1266. Date of Electronic Publication: 2021 Nov 04.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Genome, Plant*
Haplotypes*
Plant Breeding*
Crops, Agricultural/*genetics
Climate Change ; Genomics ; Stress, Physiological
Czasopismo naukowe
Tytuł :
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.
Autorzy :
Shafin K; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Pesout T; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Chang PC; Google Inc, Mountain View, CA, USA.
Nattestad M; Google Inc, Mountain View, CA, USA.
Kolesnikov A; Google Inc, Mountain View, CA, USA.
Goel S; Google Inc, Mountain View, CA, USA.
Baid G; Google Inc, Mountain View, CA, USA.
Kolmogorov M; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Eizenga JM; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Miga KH; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Carnevali P; Chan Zuckerberg Initiative, Redwood City, CA, USA.
Jain M; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA.
Carroll A; Google Inc, Mountain View, CA, USA. .
Paten B; UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA. .
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Źródło :
Nature methods [Nat Methods] 2021 Nov; Vol. 18 (11), pp. 1322-1332. Date of Electronic Publication: 2021 Nov 01.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Genes*
Haplotypes*
Nanopores*
Polymorphism, Single Nucleotide*
Software*
High-Throughput Nucleotide Sequencing/*methods
Sequence Analysis, DNA/*methods
Genome, Human ; Humans ; Molecular Sequence Annotation
Czasopismo naukowe
Tytuł :
Tibetan Y-STR trait in the eleven regions of the Qinghai-Tibet Plateau.
Autorzy :
Li G; Department of Forensic Psychiatry, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, 610041, Sichuan, China.
Lin Y; Department of Forensic Toxicological Analysis, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, 8Th Floor, Fa Yi Building, No.16, Section 3, Renmin Nan Road, Chengdu, 610041, Sichuan, China.
Lan S; Department of Forensic Toxicological Analysis, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, 8Th Floor, Fa Yi Building, No.16, Section 3, Renmin Nan Road, Chengdu, 610041, Sichuan, China.
Zou J; Department of Forensic Toxicological Analysis, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, 8Th Floor, Fa Yi Building, No.16, Section 3, Renmin Nan Road, Chengdu, 610041, Sichuan, China.
Li S; Department of Forensic Toxicological Analysis, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, 8Th Floor, Fa Yi Building, No.16, Section 3, Renmin Nan Road, Chengdu, 610041, Sichuan, China.
Song F; Department of Forensic Genetics, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, 610041, Sichuan, China.
Ye Y; Department of Forensic Toxicological Analysis, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, 8Th Floor, Fa Yi Building, No.16, Section 3, Renmin Nan Road, Chengdu, 610041, Sichuan, China. .
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Źródło :
International journal of legal medicine [Int J Legal Med] 2021 Sep; Vol. 135 (5), pp. 1793-1795. Date of Electronic Publication: 2021 Apr 27.
Typ publikacji :
Journal Article
MeSH Terms :
Chromosomes, Human, Y*
Haplotypes*
Microsatellite Repeats*
Asians/*genetics
Ethnicity/*genetics
Genetic Variation ; Genetics, Population ; Humans ; Male ; Phylogeny ; Principal Component Analysis ; Tibet/ethnology
Czasopismo naukowe
Tytuł :
Thousands of Qatari genomes inform human migration history and improve imputation of Arab haplotypes.
Autorzy :
Razali RM; Department of Human Genetics, Sidra Medicine, Doha, Qatar.
Rodriguez-Flores J; Department of Genetic Medicine, Weill Cornell Medicine, New York, NY, USA.
Ghorbani M; Department of Human Genetics, Sidra Medicine, Doha, Qatar.
Naeem H; Department of Human Genetics, Sidra Medicine, Doha, Qatar.
Aamer W; Department of Human Genetics, Sidra Medicine, Doha, Qatar.
Aliyev E; Department of Human Genetics, Sidra Medicine, Doha, Qatar.
Jubran A; Department of Human Genetics, Sidra Medicine, Doha, Qatar.
Clark AG; Department of Molecular Biology and Genetics, Cornell University, New York, NY, USA.
Fakhro KA; Department of Human Genetics, Sidra Medicine, Doha, Qatar. .; Weill Cornell Medicine-Qatar, Doha, Qatar. .; College of Health and Life Sciences, Hamad Bin Khalifa University, Doha, Qatar. .
Mokrab Y; Department of Human Genetics, Sidra Medicine, Doha, Qatar. .; Weill Cornell Medicine-Qatar, Doha, Qatar. .; College of Health and Life Sciences, Hamad Bin Khalifa University, Doha, Qatar. .
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Corporate Authors :
Qatar Genome Program Research Consortium
Źródło :
Nature communications [Nat Commun] 2021 Oct 12; Vol. 12 (1), pp. 5929. Date of Electronic Publication: 2021 Oct 12.
Typ publikacji :
Historical Article; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Chromosomes, Human, Y*
Genome, Human*
Haplotypes*
Phylogeny*
Human Migration/*history
Africa ; Alleles ; Arabs/genetics ; Asia ; DNA, Mitochondrial/genetics ; Datasets as Topic ; Europe ; Female ; Gene Flow ; Gene Frequency ; History, 21st Century ; History, Ancient ; History, Medieval ; Humans ; Male ; Phylogeography ; Qatar ; Sequence Analysis, DNA ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
LGR4 Gene Polymorphisms Are Associated With Bone and Obesity Phenotypes in Chinese Female Nuclear Families.
Autorzy :
Shi SQ; Department of Endocrinology, The First Affiliated Hospital of Henan University of Chinese Medicine, Zhengzhou, China.; Metabolic Bone Disease and Genetic Research Unit, Department of Osteoporosis and Bone Disease, Shanghai Jiao Tong University Affiliated Sixth People's Hospital, Shanghai, China.
Li SS; Metabolic Bone Disease and Genetic Research Unit, Department of Osteoporosis and Bone Disease, Shanghai Jiao Tong University Affiliated Sixth People's Hospital, Shanghai, China.
Zhang XY; Metabolic Bone Disease and Genetic Research Unit, Department of Osteoporosis and Bone Disease, Shanghai Jiao Tong University Affiliated Sixth People's Hospital, Shanghai, China.
Wei Z; Metabolic Bone Disease and Genetic Research Unit, Department of Osteoporosis and Bone Disease, Shanghai Jiao Tong University Affiliated Sixth People's Hospital, Shanghai, China.
Fu WZ; Metabolic Bone Disease and Genetic Research Unit, Department of Osteoporosis and Bone Disease, Shanghai Jiao Tong University Affiliated Sixth People's Hospital, Shanghai, China.
He JW; Metabolic Bone Disease and Genetic Research Unit, Department of Osteoporosis and Bone Disease, Shanghai Jiao Tong University Affiliated Sixth People's Hospital, Shanghai, China.
Hu YQ; Metabolic Bone Disease and Genetic Research Unit, Department of Osteoporosis and Bone Disease, Shanghai Jiao Tong University Affiliated Sixth People's Hospital, Shanghai, China.
Li M; Metabolic Bone Disease and Genetic Research Unit, Department of Osteoporosis and Bone Disease, Shanghai Jiao Tong University Affiliated Sixth People's Hospital, Shanghai, China.
Zheng LL; Department of Endocrinology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
Zhang ZL; Metabolic Bone Disease and Genetic Research Unit, Department of Osteoporosis and Bone Disease, Shanghai Jiao Tong University Affiliated Sixth People's Hospital, Shanghai, China.
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Źródło :
Frontiers in endocrinology [Front Endocrinol (Lausanne)] 2021 Oct 11; Vol. 12, pp. 656077. Date of Electronic Publication: 2021 Oct 11 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Body Mass Index*
Haplotypes*
Phenotype*
Polymorphism, Single Nucleotide*
Biomarkers/*blood
Obesity/*epidemiology
Receptors, G-Protein-Coupled/*genetics
Adult ; Bone Density ; China/epidemiology ; Female ; Follow-Up Studies ; Genetic Association Studies ; Humans ; Linkage Disequilibrium ; Male ; Middle Aged ; Nuclear Family ; Obesity/genetics ; Obesity/pathology ; Prognosis
Czasopismo naukowe
Tytuł :
Fast two-stage phasing of large-scale sequence data.
Autorzy :
Browning BL; Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA 98195, USA; Department of Biostatistics, University of Washington, Seattle, WA 98195, USA. Electronic address: .
Tian X; Statistical Innovation, Oncology Biometrics, AstraZeneca, Gaithersburg, MD 20878, USA.
Zhou Y; Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Browning SR; Department of Biostatistics, University of Washington, Seattle, WA 98195, USA.
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Źródło :
American journal of human genetics [Am J Hum Genet] 2021 Oct 07; Vol. 108 (10), pp. 1880-1890. Date of Electronic Publication: 2021 Sep 02.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Data Interpretation, Statistical*
Genome, Human*
Haplotypes*
Polymorphism, Single Nucleotide*
Software*
Asthma/*genetics
Atrial Fibrillation/*genetics
Algorithms ; Female ; Genome-Wide Association Study ; Genotype ; Humans ; Male
Czasopismo naukowe
Tytuł :
HLA haplotype frequency estimation for heterogeneous populations using a graph-based imputation algorithm.
Autorzy :
Israeli S; Department of Computer Science, Bar Ilan University, Ramat Gan, Israel.
Gragert L; Center for Blood and Marrow Transplant Research, Minneapolis, MN, USA; National Marrow Donor Program/Be The Match, Minneapolis, MN, USA; Department of Pathology, Tulane University, New Orleans, LA, USA.
Maiers M; Center for Blood and Marrow Transplant Research, Minneapolis, MN, USA; National Marrow Donor Program/Be The Match, Minneapolis, MN, USA.
Louzoun Y; Department of Mathematics, Bar Ilan University, Ramat Gan, Israel. Electronic address: .
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Źródło :
Human immunology [Hum Immunol] 2021 Oct; Vol. 82 (10), pp. 746-757. Date of Electronic Publication: 2021 Jul 26.
Typ publikacji :
Journal Article
MeSH Terms :
Alleles*
Gene Frequency*
Genetic Heterogeneity*
Haplotypes*
Software*
Genetics, Population/*methods
HLA Antigens/*genetics
Algorithms ; Databases, Genetic ; Genotype ; Histocompatibility Testing/methods ; Humans ; Reproducibility of Results ; User-Computer Interface
Czasopismo naukowe
Tytuł :
Availability of HLA-allele-matched unrelated donors and registry size: Estimation from haplotype frequency in the Italian population.
Autorzy :
Sacchi N; E.O. Galliera, Italian Bone Marrow Donor Registry Genova, Italy. Electronic address: .
Ciceri F; Department of Hematology and Stem Cell Transplantation, IRCCS San Raffaele Scientific Institute, Milan, Italy.
Bonifazi F; Istituto di Ematologia 'Seràgnoli' IRCCS Azienda Ospedaliero-Universitaria di Bologna, Bologna, Italy.
Algeri M; Dipartimento di Oncoematologia Pediatrica, IRCCS, Ospedale Pediatrico Bambino Gesu', Sapienza, Università di Roma, Roma, Italy.
Gallina A; E.O. Galliera, Italian Bone Marrow Donor Registry Genova, Italy.
Pollichieni S; E.O. Galliera, Italian Bone Marrow Donor Registry Genova, Italy.
Raggio E; E.O. Galliera, Italian Bone Marrow Donor Registry Genova, Italy.
Hadj-Amar B; Department of Statistics, Rice University, Houston, TX, USA.
Lombardini L; Italian National Transplant Centre, National Institute of Health, Rome, Italy.
Pupella S; Italian National Blood Centre, National Institute of Health, Rome, Italy.
Liumbruno G; Italian National Blood Centre, National Institute of Health, Rome, Italy.
Cardillo M; Italian National Transplant Centre, National Institute of Health, Rome, Italy.
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Źródło :
Human immunology [Hum Immunol] 2021 Oct; Vol. 82 (10), pp. 758-766. Date of Electronic Publication: 2021 Aug 02.
Typ publikacji :
Journal Article
MeSH Terms :
Alleles*
Genetics, Population*
Haplotypes*
Registries*
Tissue Donors*
HLA Antigens/*genetics
Algorithms ; Gene Frequency ; Hematopoietic Stem Cell Transplantation ; Histocompatibility Testing/methods ; Humans ; Italy ; Likelihood Functions ; Models, Theoretical ; Probability ; Unrelated Donors
Czasopismo naukowe
Tytuł :
Characterizing the Mitochondrial Diversity of Arbi Goats from Tunisia.
Autorzy :
Ressaissi Y; Institut National Agronomique de La Tunisie (INAT), 43 Avenue Charles Nicolle, 1082, Tunis, Tunisia. .
Amills M; Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Campus Universitat Autònoma de Barcelona, 08193, Bellaterra, Spain.
Noce A; Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Campus Universitat Autònoma de Barcelona, 08193, Bellaterra, Spain.
Ben Hamouda M; Institut National de La Recherche Agronomique de Tunisie (INRAT), Rue Hédi Karray, 2049, Ariana, Tunisie.
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Źródło :
Biochemical genetics [Biochem Genet] 2021 Oct; Vol. 59 (5), pp. 1225-1232. Date of Electronic Publication: 2021 Mar 20.
Typ publikacji :
Journal Article
MeSH Terms :
Genetic Variation*
Haplotypes*
DNA, Mitochondrial/*genetics
Mitochondria/*genetics
Sequence Analysis, DNA/*methods
Animals ; DNA, Mitochondrial/analysis ; Goats ; Phylogeny ; Tunisia
Czasopismo naukowe
Tytuł :
Genome-wide autosomal, mtDNA, and Y chromosome analysis of King Bela III of the Hungarian Arpad dynasty.
Autorzy :
Wang CC; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, 07745, Jena, Germany.; Department of Anthropology and Ethnology, Institute of Anthropology, School of Sociology and Anthropology, State Key Laboratory of Cellular Stress Biology, State Key Laboratory of Marine Environmental Science, National Institute for Data Science in Health and Medicine, School of Life Sciences, Xiamen University, Xiamen, 361005, China.
Posth C; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, 07745, Jena, Germany.; Institute for Archaeological Sciences, Archaeo- and Palaeogenetics, University of Tübingen, 72070, Tübingen, Germany.
Furtwängler A; Institute for Archaeological Sciences, Archaeo- and Palaeogenetics, University of Tübingen, 72070, Tübingen, Germany.
Sümegi K; Department of Medical Genetics, Medical School, University of Pécs, Szigeti u. 12, Pécs, 7624, Hungary.; Szentágothai Research Center, University of Pécs, Ifjúság út 24, Pécs, 7624, Hungary.; Department of Biochemistry and Medical Chemistry, Medical School, University of Pécs, Szigeti u. 12, Pécs, 7624, Hungary.
Bánfai Z; Department of Medical Genetics, Medical School, University of Pécs, Szigeti u. 12, Pécs, 7624, Hungary.; Szentágothai Research Center, University of Pécs, Ifjúság út 24, Pécs, 7624, Hungary.
Kásler M; National Institute of Oncology, Rácz Gy. u. 7-9, Budapest, 1122, Hungary.
Krause J; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, 07745, Jena, Germany.; Institute for Archaeological Sciences, Archaeo- and Palaeogenetics, University of Tübingen, 72070, Tübingen, Germany.
Melegh B; Department of Medical Genetics, Medical School, University of Pécs, Szigeti u. 12, Pécs, 7624, Hungary. .; Szentágothai Research Center, University of Pécs, Ifjúság út 24, Pécs, 7624, Hungary. .
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Źródło :
Scientific reports [Sci Rep] 2021 Sep 28; Vol. 11 (1), pp. 19210. Date of Electronic Publication: 2021 Sep 28.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA, Ancient*
Genetics, Population*
Haplotypes*
Asians/genetics ; Chromosomes, Human, Y/genetics ; DNA, Mitochondrial/genetics ; Female ; Humans ; Hungary ; Male ; Pedigree
Czasopismo naukowe
Tytuł :
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction.
Autorzy :
Knyazev S; Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA.; Division of HIV Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA.; Oak Ridge Institute for Science and Education, Oak Ridge, TN 37830, USA.
Tsyvina V; Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA.
Shankar A; Division of HIV Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA.
Melnyk A; Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA.
Artyomenko A; Guardant Health Inc., Redwood City, CA 94063, USA.
Malygina T; International Scientific and Research Institute of Bioengineering, ITMO University, St. Petersburg 197101, Russia.
Porozov YB; World-Class Research Center 'Digital biodesign and personalized healthcare', I.M. Sechenov First Moscow State Medical University, Moscow 119991, Russia.; Department of Computational Biology, Sirius University of Science and Technology, Sochi 354340, Russia.
Campbell EM; Division of HIV Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA.
Switzer WM; Division of HIV Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA.
Skums P; Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA.
Mangul S; Department of Clinical Pharmacy, School of Pharmacy, University of Southern California, Los Angeles, CA 90089, USA.
Zelikovsky A; Department of Computer Science, Georgia State University, Atlanta, GA 30302, USA.; World-Class Research Center 'Digital biodesign and personalized healthcare', I.M. Sechenov First Moscow State Medical University, Moscow 119991, Russia.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Sep 27; Vol. 49 (17), pp. e102.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Algorithms*
Haplotypes*
Computational Biology/*methods
High-Throughput Nucleotide Sequencing/*methods
RNA Virus Infections/*diagnosis
RNA Viruses/*genetics
COVID-19/diagnosis ; COVID-19/virology ; Gene Frequency ; HIV Infections/diagnosis ; HIV Infections/virology ; HIV-1/genetics ; Humans ; Mutation ; Polymorphism, Single Nucleotide ; RNA Virus Infections/virology ; Reproducibility of Results ; SARS-CoV-2/genetics ; Sensitivity and Specificity
Czasopismo naukowe
Tytuł :
Mitochondrial DNA Haplogroup Related to the Prevalence of Helicobacter pylori .
Autorzy :
Lee Y; Department of Biomedical Science, College of Life Science and Center for Embryo and Stem Cell Research, CHA Advanced Research Institute, CHA University, Seongnam, Gyeonggi 13488, Korea.
Lee SM; Asan Medical Center, Asan Institute for Life Sciences, Seoul 05505, Korea.
Choi J; Department of Biomedical Science, College of Life Science and Center for Embryo and Stem Cell Research, CHA Advanced Research Institute, CHA University, Seongnam, Gyeonggi 13488, Korea.
Kang S; Department of Biomedical Science, College of Life Science and Center for Embryo and Stem Cell Research, CHA Advanced Research Institute, CHA University, Seongnam, Gyeonggi 13488, Korea.
So S; Department of Biomedical Science, College of Life Science and Center for Embryo and Stem Cell Research, CHA Advanced Research Institute, CHA University, Seongnam, Gyeonggi 13488, Korea.; Department of Convergence Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul 05505, Korea.
Kim D; Department of Pathology, Asan Medical Center, University of Ulsan College of Medicine, Seoul 05505, Korea.
Ahn JY; Department of Gastroenterology, Asan Medical Center, University of Ulsan College of Medicine, Seoul 05505, Korea.
Jung HY; Department of Gastroenterology, Asan Medical Center, University of Ulsan College of Medicine, Seoul 05505, Korea.
Jeong JY; Asan Medical Center, Asan Institute for Life Sciences, Seoul 05505, Korea.; Department of Convergence Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul 05505, Korea.
Kang E; Department of Biomedical Science, College of Life Science and Center for Embryo and Stem Cell Research, CHA Advanced Research Institute, CHA University, Seongnam, Gyeonggi 13488, Korea.
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Źródło :
Cells [Cells] 2021 Sep 19; Vol. 10 (9). Date of Electronic Publication: 2021 Sep 19.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Haplotypes*
Mutation*
DNA, Mitochondrial/*genetics
Helicobacter Infections/*epidemiology
Helicobacter pylori/*pathogenicity
Stomach Diseases/*epidemiology
Aged ; Female ; Fibroblasts/metabolism ; Fibroblasts/microbiology ; Fibroblasts/pathology ; Gastric Mucosa/metabolism ; Gastric Mucosa/microbiology ; Gastric Mucosa/pathology ; Genome, Mitochondrial ; Helicobacter Infections/complications ; Helicobacter Infections/genetics ; Helicobacter Infections/microbiology ; Helicobacter pylori/isolation & purification ; Humans ; Male ; Middle Aged ; Prevalence ; Republic of Korea/epidemiology ; Stomach Diseases/complications ; Stomach Diseases/genetics ; Stomach Diseases/microbiology
Czasopismo naukowe
Tytuł :
Parental relatedness through time revealed by runs of homozygosity in ancient DNA.
Autorzy :
Ringbauer H; Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany. .; Department of Human Genetics, University of Chicago, Chicago, IL, USA. .
Novembre J; Department of Human Genetics, University of Chicago, Chicago, IL, USA.; Department of Ecology and Evolution, University of Chicago, Chicago, IL, USA.
Steinrücken M; Department of Human Genetics, University of Chicago, Chicago, IL, USA.; Department of Ecology and Evolution, University of Chicago, Chicago, IL, USA.
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Źródło :
Nature communications [Nat Commun] 2021 Sep 14; Vol. 12 (1), pp. 5425. Date of Electronic Publication: 2021 Sep 14.
Typ publikacji :
Historical Article; Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Genome, Human*
Haplotypes*
Homozygote*
Inheritance Patterns*
DNA, Ancient/*analysis
Population Dynamics/*history
Agriculture/history ; Female ; History, Ancient ; Humans ; Male
Czasopismo naukowe
Tytuł :
eQTLHap: a tool for comprehensive eQTL analysis considering haplotypic and genotypic effects.
Autorzy :
Al Bkhetan Z; School of Computing and Information Systems, The University of Melbourne, Parkville, 3010, Australia.
Chana G; Department of Medicine, Royal Melbourne Hospital, The University of Melbourne, Parkville, 3010, Australia.
Soon Ong C; Data61, CSIRO, Canberra, 2601, Australia.
Goudey B; School of Computing and Information Systems, The University of Melbourne, Parkville, 3010, Australia.; IBM Australia Research, Southgate, Victoria, Australia.
Ramamohanarao K; School of Computing and Information Systems, The University of Melbourne, Parkville, 3010, Australia.
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Źródło :
Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Haplotypes*
Polymorphism, Single Nucleotide*
Computational Biology/*methods
Genome-Wide Association Study/*methods
Quantitative Trait Loci/*genetics
Algorithms ; Gene Expression Regulation ; Genotype ; Humans ; Internet ; Linkage Disequilibrium
Czasopismo naukowe

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