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Tytuł:
Mutation landscape in Chinese nodal diffuse large B-cell lymphoma by targeted next generation sequencing and their relationship with clinicopathological characteristics.
Autorzy:
Cao B; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.; Institute of Pathology, Fudan University, Shanghai, China.; Fudan University Medical Library, Shanghai, China.
Sun C; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.; Institute of Pathology, Fudan University, Shanghai, China.
Bi R; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.; Institute of Pathology, Fudan University, Shanghai, China.
Liu Z; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.; Institute of Pathology, Fudan University, Shanghai, China.; Department of Pathology, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.
Jia Y; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.; Institute of Pathology, Fudan University, Shanghai, China.
Cui W; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.; Institute of Pathology, Fudan University, Shanghai, China.; Department of Pathology, The First Affiliated Hospital of Xinjiang Medical University, Urumqi, Xinjiang Uygur Autonomous Region, China.
Sun M; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.; Institute of Pathology, Fudan University, Shanghai, China.
Yu B; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.; Institute of Pathology, Fudan University, Shanghai, China.
Li X; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.; Institute of Pathology, Fudan University, Shanghai, China.
Zhou X; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China. .; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China. .; Institute of Pathology, Fudan University, Shanghai, China. .
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Źródło:
BMC medical genomics [BMC Med Genomics] 2024 Apr 13; Vol. 17 (1), pp. 84. Date of Electronic Publication: 2024 Apr 13.
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Lymphoma, Large B-Cell, Diffuse*/genetics
Humans ; Interleukin-1 Receptor-Like 1 Protein ; Myeloid Differentiation Factor 88/genetics ; China
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
High-throughput DNA extraction and cost-effective miniaturized metagenome and amplicon library preparation of soil samples for DNA sequencing.
Autorzy:
Jensen TBN; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Dall SM; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Knutsson S; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Karst SM; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Albertsen M; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
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Źródło:
PloS one [PLoS One] 2024 Apr 04; Vol. 19 (4), pp. e0301446. Date of Electronic Publication: 2024 Apr 04 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Metagenome*
High-Throughput Nucleotide Sequencing*/methods
Cost-Benefit Analysis ; Sequence Analysis, DNA/methods ; DNA ; Soil ; Metagenomics/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Comparison of metagenomic next-generation sequencing and conventional culture for the diagnostic performance in febrile patients with suspected infections.
Autorzy:
Yang H; Department of Infectious Disease, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong, 250012, China.
Xu N; Department of Infectious Disease, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong, 250012, China.
Yan M; Department of Intensive Care Unit, Qilu Hospital, Cheeloo College of Medicine, ShandongUniversity, Jinan, Shandong, 250012, China.
Yang L; Department of Infectious Disease, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong, 250012, China.
Wen S; Department of Infectious Disease, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong, 250012, China.
Wang S; Department of Infectious Disease, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong, 250012, China.
Qu C; Department of Infectious Disease, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong, 250012, China.
Xu K; Department of Infectious Disease, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong, 250012, China.
Yang X; Department of Scientific Affaires, Hugobiotech Co., Ltd., No.1, East Disheng Road, Beijing, 100176, China.
Wang G; Department of Infectious Disease, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong, 250012, China. .
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Źródło:
BMC infectious diseases [BMC Infect Dis] 2024 Mar 26; Vol. 24 (1), pp. 350. Date of Electronic Publication: 2024 Mar 26.
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Communicable Diseases*
Humans ; Anti-Bacterial Agents ; Antifungal Agents ; Combined Modality Therapy ; Fever ; Sensitivity and Specificity
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
High-throughput sequencing of insect specimens with sub-optimal DNA preservation using a practical, plate-based Illumina-compatible Tn5 transposase library preparation method.
Autorzy:
Cobb L; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
de Muinck E; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
Kollias S; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
Skage M; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
Gilfillan GD; Department of Medical Genetics, Oslo University Hospital Ullevål and University of Oslo, Oslo, Norway.
Sydenham MAK; Norwegian Institute for Nature Research (NINA), Oslo, Norway.
Qiao SW; Department of Immunology, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.
Star B; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
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Źródło:
PloS one [PLoS One] 2024 Mar 22; Vol. 19 (3), pp. e0300865. Date of Electronic Publication: 2024 Mar 22 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
DNA*/genetics
High-Throughput Nucleotide Sequencing*/methods
Transposases*
Gene Library ; Ethanol ; Sequence Analysis, DNA/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
GNNMF: a multi-view graph neural network for ATAC-seq motif finding.
Autorzy:
Zhang S; School of Cyber Science and Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China.
Wu X; School of Artificial Intelligence, Jilin University, Changchun, 130012, China.
Lian Z; School of Cyber Science and Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China. .
Zuo C; Institute of Artificial Intelligence, Donghua University, Shanghai, 201620, China.
Wang Y; School of Artificial Intelligence, Jilin University, Changchun, 130012, China. .; Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China. .
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Źródło:
BMC genomics [BMC Genomics] 2024 Mar 21; Vol. 25 (1), pp. 300. Date of Electronic Publication: 2024 Mar 21.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin Immunoprecipitation Sequencing*
High-Throughput Nucleotide Sequencing*
Humans ; Animals ; Mice ; Sequence Analysis, DNA ; Chromatin/genetics ; Neural Networks, Computer
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
The rise of big data: deep sequencing-driven computational methods are transforming the landscape of synthetic antibody design.
Autorzy:
Gallo E; Department of Medicinal Chemistry, Avance Biologicals, 950 Dupont Street, Toronto, ON, M6H 1Z2, Canada. .; Department of Protein Engineering, RevivAb, Av. Ipiranga, 6681, Partenon, Porto Alegre, RS, 90619-900, Brazil. .
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Źródło:
Journal of biomedical science [J Biomed Sci] 2024 Mar 16; Vol. 31 (1), pp. 29. Date of Electronic Publication: 2024 Mar 16.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Genomics*
High-Throughput Nucleotide Sequencing*
Binding Sites, Antibody
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Enhancing Clinical Utility: Utilization of International Standards and Guidelines for Metagenomic Sequencing in Infectious Disease Diagnosis.
Autorzy:
Kan CM; Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong, China.
Tsang HF; Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong, China.
Pei XM; Department of Applied Biology & Chemical Technology, The Hong Kong Polytechnic University, Hong Kong, China.
Ng SSM; Department of Surgery, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong, China.
Yim AK; Codex Genetics Limited, Shatin, Hong Kong, China.
Yu AC; Codex Genetics Limited, Shatin, Hong Kong, China.
Wong SCC; Department of Applied Biology & Chemical Technology, The Hong Kong Polytechnic University, Hong Kong, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Mar 15; Vol. 25 (6). Date of Electronic Publication: 2024 Mar 15.
Typ publikacji:
Journal Article; Review
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Communicable Diseases*/diagnosis
Humans ; Reproducibility of Results ; Metagenome ; Reference Standards ; Metagenomics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Computational prediction of protein interactions in single cells by proximity sequencing.
Autorzy:
Xia J; Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois, United States of America.
Phan HV; Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois, United States of America.
Vistain L; Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois, United States of America.
Chen M; Section of Genetic Medicine, Department of Medicine, The University of Chicago, Chicago, Illinois, United States of America.; Department Human Genetics, The University of Chicago, Chicago, Illinois, United States of America.
Khan AA; Department of Pathology, The University of Chicago, Chicago, Illinois, United States of America.
Tay S; Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2024 Mar 14; Vol. 20 (3), pp. e1011915. Date of Electronic Publication: 2024 Mar 14 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*/methods
Cell Communication*
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
LAP: Liability Antibody Profiler by sequence & structural mapping of natural and therapeutic antibodies.
Autorzy:
Satława T; Natural Antibody, Kraków, Poland.
Tarkowski M; Natural Antibody, Kraków, Poland.
Wróbel S; Natural Antibody, Kraków, Poland.
Dudzic P; Natural Antibody, Kraków, Poland.
Gawłowski T; Natural Antibody, Kraków, Poland.
Klaus T; Pure Biologics, Wrocław, Poland.
Orłowski M; Pure Biologics, Wrocław, Poland.; Department of Biochemistry, Molecular Biology and Biotechnology, Faculty of Chemistry, Wrocław University of Science and Technology, Wrocław, Poland.
Kostyn A; Pure Biologics, Wrocław, Poland.
Kumar S; Moderna Inc, Cambridge, Massachusetts, United States of America.
Buchanan A; Biologics Engineering, AstraZeneca, Cambridge, United Kingdom.
Krawczyk K; Natural Antibody, Kraków, Poland.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2024 Mar 05; Vol. 20 (3), pp. e1011881. Date of Electronic Publication: 2024 Mar 05 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Antibodies*/therapeutic use
High-Throughput Nucleotide Sequencing*
Probability
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Genetic sex validation for sample tracking in next-generation sequencing clinical testing.
Autorzy:
Hu J; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA.
Korchina V; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA.
Zouk H; Laboratory for Molecular Medicine (LMM), Mass General Brigham, Cambridge, MA, USA.; Department of Pathology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Harden MV; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Murdock D; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Macbeth A; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Harrison SM; Laboratory for Molecular Medicine (LMM), Mass General Brigham, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Lennon N; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Kovar C; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA.
Balasubramanian A; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA.
Zhang L; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA.
Chandanavelli G; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA.
Pasham D; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA.
Rowley R; Division of Genomic Medicine, National Human Genome Research Institute, Bethesda, MD, USA.
Wiley K; Division of Genomic Medicine, National Human Genome Research Institute, Bethesda, MD, USA.
Smith ME; Center for Genetic Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Gordon A; Center for Genetic Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Jarvik GP; Division of Medical Genetics, Department of Medicine, University of Washington Medical Center, Seattle, WA, USA.
Sleiman P; Center for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Kelly MA; Genomic Medicine Institute, Geisinger, Danville, PA, USA.
Bland HT; Vanderbilt University Medical Center, Nashville, TN, USA.
Murugan M; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA.
Venner E; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA.
Boerwinkle E; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA.; Human Genetics Center, University of Texas Health Science Center at Houston, Houston, TX, USA.
Prows C; Division of Human Genetics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Mahanta L; Laboratory for Molecular Medicine (LMM), Mass General Brigham, Cambridge, MA, USA.
Rehm HL; Laboratory for Molecular Medicine (LMM), Mass General Brigham, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Gibbs RA; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA.
Muzny DM; Baylor College of Medicine, Human Genome Sequencing Center (HGSC), Houston, TX, USA. .
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Corporate Authors:
eMERGE III consortium
Źródło:
BMC research notes [BMC Res Notes] 2024 Mar 03; Vol. 17 (1), pp. 62. Date of Electronic Publication: 2024 Mar 03.
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Clinical Laboratory Services*
Humans ; Bone Marrow Transplantation ; Genotype ; Laboratories
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Genome sequencing as a generic diagnostic strategy for rare disease.
Autorzy:
Schobers G; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.; Research Institute for Medical Innovation, Radboudumc, Nijmegen, Netherlands.
Derks R; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.
den Ouden A; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.
Swinkels H; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.
van Reeuwijk J; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.; Research Institute for Medical Innovation, Radboudumc, Nijmegen, Netherlands.
Bosgoed E; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.
Lugtenberg D; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.
Sun SM; Department of Clinical Genetics, Maastricht University Medical Center, Maastricht, Netherlands.
Corominas Galbany J; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.; Research Institute for Medical Innovation, Radboudumc, Nijmegen, Netherlands.
Weiss M; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.
Blok MJ; Department of Clinical Genetics, Maastricht University Medical Center, Maastricht, Netherlands.
Olde Keizer RACM; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.; Research Institute for Medical Innovation, Radboudumc, Nijmegen, Netherlands.
Hofste T; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.
Hellebrekers D; Department of Clinical Genetics, Maastricht University Medical Center, Maastricht, Netherlands.
de Leeuw N; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.
Stegmann A; Department of Clinical Genetics, Maastricht University Medical Center, Maastricht, Netherlands.
Kamsteeg EJ; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.
Paulussen ADC; Department of Clinical Genetics, Maastricht University Medical Center, Maastricht, Netherlands.
Ligtenberg MJL; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.; Research Institute for Medical Innovation, Radboudumc, Nijmegen, Netherlands.
Bradley XZ; Illumina Inc., Cambridge, UK.
Peden J; Illumina Inc., Cambridge, UK.
Gutierrez A; Illumina Inc., Cambridge, UK.
Pullen A; Illumina Inc., Cambridge, UK.
Payne T; Illumina Inc., Cambridge, UK.
Gilissen C; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.; Research Institute for Medical Innovation, Radboudumc, Nijmegen, Netherlands.
van den Wijngaard A; Department of Clinical Genetics, Maastricht University Medical Center, Maastricht, Netherlands.
Brunner HG; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.; Research Institute for Medical Innovation, Radboudumc, Nijmegen, Netherlands.; Department of Clinical Genetics, Maastricht University Medical Center, Maastricht, Netherlands.
Nelen M; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.
Yntema HG; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands.; Research Institute for Medical Innovation, Radboudumc, Nijmegen, Netherlands.
Vissers LELM; Department of Human Genetics, Radboudumc, Nijmegen, Netherlands. .; Research Institute for Medical Innovation, Radboudumc, Nijmegen, Netherlands. .
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Źródło:
Genome medicine [Genome Med] 2024 Feb 14; Vol. 16 (1), pp. 32. Date of Electronic Publication: 2024 Feb 14.
Typ publikacji:
Journal Article
MeSH Terms:
Rare Diseases*/diagnosis
Rare Diseases*/genetics
High-Throughput Nucleotide Sequencing*
Humans ; Whole Genome Sequencing ; Base Sequence ; Chromosome Mapping ; Exome Sequencing
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs.
Autorzy:
Westrin KJ; Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, 171 65, Solna, Sweden.
Kretzschmar WW; Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, 171 65, Solna, Sweden.; Department of Medicine Huddinge, Center for Hematology and Regenerative Medicine (HERM), Karolinska Institute, 141 52, Flemingsberg, Sweden.
Emanuelsson O; Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, 171 65, Solna, Sweden. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Feb 01; Vol. 25 (1), pp. 54. Date of Electronic Publication: 2024 Feb 01.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
High-Throughput Nucleotide Sequencing*/methods
Sequence Analysis ; RNA-Seq ; Sequence Analysis, RNA ; Protein Isoforms/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Evaluation of the diagnostic effectiveness of next generation sequencing in sepsis etiology: a systematic review and meta-analysis.
Autorzy:
Li D; Department of Infectious Diseases, Changzheng Hospital, Naval Medical University, Shanghai, China.
Yang Y; Department of Infectious Diseases, Changzheng Hospital, Naval Medical University, Shanghai, China.
Xie Y; Department of Infectious Diseases, Changzheng Hospital, Naval Medical University, Shanghai, China.
Wang J; Department of Infectious Diseases, Changzheng Hospital, Naval Medical University, Shanghai, China.
Xu W; Department of Infectious Diseases, Changzheng Hospital, Naval Medical University, Shanghai, China.
Wang J; Department of Infectious Diseases, Changzheng Hospital, Naval Medical University, Shanghai, China.
Hang X; Department of Infectious Diseases, Changzheng Hospital, Naval Medical University, Shanghai, China.
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Źródło:
Journal of infection in developing countries [J Infect Dev Ctries] 2023 Dec 31; Vol. 17 (12), pp. 1667-1673. Date of Electronic Publication: 2023 Dec 31.
Typ publikacji:
Meta-Analysis; Systematic Review; Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Sepsis*/diagnosis
Humans ; Area Under Curve ; Blood Culture ; Bronchoalveolar Lavage Fluid
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Unraveling metagenomics through long-read sequencing: a comprehensive review.
Autorzy:
Kim C; Center of Excellence in Genomics and Precision Dentistry, Department of Physiology, Faculty of Dentistry, Chulalongkorn University, Bangkok, Thailand.; Graduate Program in Bioinformatics and Computational Biology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand.
Pongpanich M; Department of Mathematics and Computer Science, Faculty of Science, Chulalongkorn University, Bangkok, Thailand.; Center of Excellence for Cancer and Inflammation, Chulalongkorn University, Bangkok, Thailand.
Porntaveetus T; Center of Excellence in Genomics and Precision Dentistry, Department of Physiology, Faculty of Dentistry, Chulalongkorn University, Bangkok, Thailand. .; Graduate Program in Geriatric and Special Patients Care, Faculty of Dentistry, Chulalongkorn University, Bangkok, Thailand. .
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Źródło:
Journal of translational medicine [J Transl Med] 2024 Jan 28; Vol. 22 (1), pp. 111. Date of Electronic Publication: 2024 Jan 28.
Typ publikacji:
Journal Article; Review
MeSH Terms:
High-Throughput Nucleotide Sequencing*/methods
Metagenomics*/methods
RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA/methods ; Genomics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Illumina reads correction: evaluation and improvements.
Autorzy:
Długosz M; Faculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, 44-100, Gliwice, Poland.
Deorowicz S; Faculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, 44-100, Gliwice, Poland. .
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Źródło:
Scientific reports [Sci Rep] 2024 Jan 26; Vol. 14 (1), pp. 2232. Date of Electronic Publication: 2024 Jan 26.
Typ publikacji:
Journal Article
MeSH Terms:
Algorithms*
High-Throughput Nucleotide Sequencing*/methods
Humans ; Aged ; Sequence Analysis, DNA/methods ; INDEL Mutation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
An improved and extended dual-index multiplexed 16S rRNA sequencing for the Illumina HiSeq and MiSeq platform.
Autorzy:
Larin AK; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia. .
Klimina KM; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.
Veselovsky VA; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.
Olekhnovich EI; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.
Morozov MD; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.
Boldyreva DI; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.
Yunes RA; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.
Manolov AI; Research Institute for Systems Biology and Medicine, Moscow, Russia.
Fedorov DE; Research Institute for Systems Biology and Medicine, Moscow, Russia.
Pavlenko AV; Research Institute for Systems Biology and Medicine, Moscow, Russia.
Galeeva YS; Research Institute for Systems Biology and Medicine, Moscow, Russia.
Starikova EV; Research Institute for Systems Biology and Medicine, Moscow, Russia.
Ilina EN; Research Institute for Systems Biology and Medicine, Moscow, Russia.
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Źródło:
BMC genomic data [BMC Genom Data] 2024 Jan 22; Vol. 25 (1), pp. 8. Date of Electronic Publication: 2024 Jan 22.
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Culture*
Humans ; RNA, Ribosomal, 16S/genetics ; Feces ; Laboratories
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing.
Autorzy:
Chen HC; Department of Biostatistics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.; Center for Quantitative Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Wang J; Department of Biostatistics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.; Center for Quantitative Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Shyr Y; Department of Biostatistics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.; Center for Quantitative Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Liu Q; Department of Biostatistics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.; Center for Quantitative Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2024 Jan 22; Vol. 20 (1), pp. e1011786. Date of Electronic Publication: 2024 Jan 22 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Software*
Reproducibility of Results ; RNA ; Sequence Analysis, RNA
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A multimodal graph neural network framework for cancer molecular subtype classification.
Autorzy:
Li B; Department of Computer Science and Engineering, University of Connecticut, Storrs, USA.
Nabavi S; Department of Computer Science and Engineering, University of Connecticut, Storrs, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Jan 15; Vol. 25 (1), pp. 27. Date of Electronic Publication: 2024 Jan 15.
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Neoplasms*/genetics
Knowledge ; Learning ; Neural Networks, Computer
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Comparative analysis of metagenomic classifiers for long-read sequencing datasets.
Autorzy:
Marić J; Faculty of Electrical Engineering and Computing, University of Zagreb, Unska 3, 10000, Zagreb, Croatia.
Križanović K; Faculty of Electrical Engineering and Computing, University of Zagreb, Unska 3, 10000, Zagreb, Croatia.
Riondet S; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), 60 Biopolis Street, Genome, Singapore, 138672, Republic of Singapore.; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, 117596, Republic of Singapore.
Nagarajan N; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), 60 Biopolis Street, Genome, Singapore, 138672, Republic of Singapore. Niranjan_.; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, 117596, Republic of Singapore. Niranjan_.
Šikić M; Faculty of Electrical Engineering and Computing, University of Zagreb, Unska 3, 10000, Zagreb, Croatia. mile_.; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), 60 Biopolis Street, Genome, Singapore, 138672, Republic of Singapore. mile_.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Jan 11; Vol. 25 (1), pp. 15. Date of Electronic Publication: 2024 Jan 11.
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Metagenome*
Sequence Analysis, DNA ; Metagenomics ; Databases, Protein ; Nucleotides
Czasopismo naukowe
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Tytuł:
Genetic Characteristics of Wuxiang Virus in Shanxi Province, China.
Autorzy:
Zheng Y; Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Tian X; Shanxi Province Center for Disease Control and Prevention, Taiyuan 030012, China.
Wang R; National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Yao X; National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.; Jiangsu Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, College of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Zhang W; National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Yin Q; National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Li F; National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Nie K; National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Cui Q; National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Xu S; National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Fu S; National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Li H; Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Cheng J; Shanxi Province Center for Disease Control and Prevention, Taiyuan 030012, China.
Wang H; National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
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Źródło:
Viruses [Viruses] 2024 Jan 10; Vol. 16 (1). Date of Electronic Publication: 2024 Jan 10.
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Psychodidae*
Animals ; Phylogeny ; China/epidemiology ; Amino Acid Sequence ; RNA-Dependent RNA Polymerase
Czasopismo naukowe
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