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Tytuł:
Hydrophilic Interaction Liquid Chromatography-Hydrogen/Deuterium Exchange-Mass Spectrometry (HILIC-HDX-MS) for Untargeted Metabolomics.
Autorzy:
Cajka T; Institute of Physiology of the Czech Academy of Sciences, Videnska 1083, 14200 Prague, Czech Republic.
Hricko J; Institute of Physiology of the Czech Academy of Sciences, Videnska 1083, 14200 Prague, Czech Republic.
Rakusanova S; Institute of Physiology of the Czech Academy of Sciences, Videnska 1083, 14200 Prague, Czech Republic.
Brejchova K; Institute of Physiology of the Czech Academy of Sciences, Videnska 1083, 14200 Prague, Czech Republic.
Novakova M; Institute of Physiology of the Czech Academy of Sciences, Videnska 1083, 14200 Prague, Czech Republic.
Rudl Kulhava L; Institute of Physiology of the Czech Academy of Sciences, Videnska 1083, 14200 Prague, Czech Republic.
Hola V; Institute of Physiology of the Czech Academy of Sciences, Videnska 1083, 14200 Prague, Czech Republic.
Paucova M; Institute of Physiology of the Czech Academy of Sciences, Videnska 1083, 14200 Prague, Czech Republic.
Fiehn O; West Coast Metabolomics Center, University of California, Davis, 451 Health Sciences Drive, Davis, CA 95616, USA.
Kuda O; Institute of Physiology of the Czech Academy of Sciences, Videnska 1083, 14200 Prague, Czech Republic.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Mar 01; Vol. 25 (5). Date of Electronic Publication: 2024 Mar 01.
Typ publikacji:
Journal Article
MeSH Terms:
Metabolomics*/methods
Hydrogen Deuterium Exchange-Mass Spectrometry*
Deuterium ; Chromatography, Liquid/methods ; Hydrophobic and Hydrophilic Interactions
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
TTYH family members form tetrameric complexes at the cell membrane.
Autorzy:
Melvin E; Department of Physiology and Pharmacology, Sackler Faculty of Medicine, Tel Aviv University, Tel-Aviv, 6997801, Israel.
Kalaninová Z; Institute of Microbiology of the Czech Academy of Sciences, Division BioCeV, Prumyslova 595, 252 50, Vestec, Czech Republic.; Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030/8, 128 43, Prague 2, Czech Republic.
Shlush E; Department of Physiology and Pharmacology, Sackler Faculty of Medicine, Tel Aviv University, Tel-Aviv, 6997801, Israel.
Man P; Institute of Microbiology of the Czech Academy of Sciences, Division BioCeV, Prumyslova 595, 252 50, Vestec, Czech Republic.
Giladi M; Department of Physiology and Pharmacology, Sackler Faculty of Medicine, Tel Aviv University, Tel-Aviv, 6997801, Israel. .; Tel Aviv Sourasky Medical Center, Tel Aviv, 6423906, Israel. .
Haitin Y; Department of Physiology and Pharmacology, Sackler Faculty of Medicine, Tel Aviv University, Tel-Aviv, 6997801, Israel. .; Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, 6997801, Israel. .
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Źródło:
Communications biology [Commun Biol] 2022 Aug 30; Vol. 5 (1), pp. 886. Date of Electronic Publication: 2022 Aug 30.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Detergents*
Hydrogen Deuterium Exchange-Mass Spectrometry*
Animals ; Cell Membrane ; Mice
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Empirical Bayes functional models for hydrogen deuterium exchange mass spectrometry.
Autorzy:
Crook OM; Department of Statistics, University of Oxford, Oxford, OX1 3LB, UK. .
Chung CW; Structural and Biophysical Sciences, GlaxoSmithKline R&D, Stevenage, SG1 2NY, UK.
Deane CM; Department of Statistics, University of Oxford, Oxford, OX1 3LB, UK.
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Źródło:
Communications biology [Commun Biol] 2022 Jun 15; Vol. 5 (1), pp. 588. Date of Electronic Publication: 2022 Jun 15.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Deuterium Exchange Measurement*/methods
Hydrogen Deuterium Exchange-Mass Spectrometry*
Bayes Theorem ; Deuterium/chemistry ; Mass Spectrometry/methods ; Peptides
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Epitope mapping of antibodies in C-reactive protein assay kits by hydrogen-deuterium exchange mass spectrometry explains differential results across kits.
Autorzy:
Sun H; Division of Chemical Metrology and Analytical Science, National Institute of Metrology, Beijing, 100029, China.; School of Chemical and Engineering, Nanjing University of Science and Technology, Jiangsu, 210094, China.
Liu J; Division of Chemical Metrology and Analytical Science, National Institute of Metrology, Beijing, 100029, China.
Xiao P; Division of Chemical Metrology and Analytical Science, National Institute of Metrology, Beijing, 100029, China.
Zhou Y; Division of Chemical Metrology and Analytical Science, National Institute of Metrology, Beijing, 100029, China.; School of Chemical Engineering, Beijing University of Chemical Technology, Beijing, 100029, China.
Li H; Division of Chemical Metrology and Analytical Science, National Institute of Metrology, Beijing, 100029, China.
Shen M; Reference Laboratory, Medical System Biotechnology Co., Ltd., Ningbo, 315104, China.
Sun K; Reference System Department, Maccura Biotechnology Co., Ltd., Chengdu, 611713, China.
Wang X; Reference Laboratory, Beijing Strong Biotechnologies, Inc., Beijing, 101400, Huairou, China.
Zhou M; School of Chemical and Engineering, Nanjing University of Science and Technology, Jiangsu, 210094, China. .
Song D; Division of Chemical Metrology and Analytical Science, National Institute of Metrology, Beijing, 100029, China. .
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Źródło:
Analytical and bioanalytical chemistry [Anal Bioanal Chem] 2022 May; Vol. 414 (13), pp. 3875-3884. Date of Electronic Publication: 2022 Apr 07.
Typ publikacji:
Journal Article
MeSH Terms:
Deuterium Exchange Measurement*/methods
Hydrogen Deuterium Exchange-Mass Spectrometry*
C-Reactive Protein ; Deuterium ; Epitope Mapping/methods ; Epitopes
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
HDXmodeller: an online webserver for high-resolution HDX-MS with auto-validation.
Autorzy:
Salmas RE; Department of Chemistry, Britannia House, King's College London, SE1 1DB, London, UK.
Borysik AJ; Department of Chemistry, Britannia House, King's College London, SE1 1DB, London, UK. .
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Źródło:
Communications biology [Commun Biol] 2021 Feb 15; Vol. 4 (1), pp. 199. Date of Electronic Publication: 2021 Feb 15.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Hydrogen Deuterium Exchange-Mass Spectrometry*
Internet*
Proteins/*metabolism
Animals ; Automation, Laboratory ; High-Throughput Nucleotide Sequencing ; Humans ; Protein Binding ; Protein Folding ; Proteins/chemistry ; Proteolysis ; Reproducibility of Results
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A multifaceted strategy to improve recombinant expression and structural characterisation of a Trypanosoma invariant surface protein.
Autorzy:
Sülzen H; Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo namesti 2, 16610, Prague 6, Czech Republic.; Faculty of Science, Charles University, Albertov 6, 12800, Prague 2, Czech Republic.
Votrubova J; Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo namesti 2, 16610, Prague 6, Czech Republic.
Dhillon A; Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo namesti 2, 16610, Prague 6, Czech Republic.
Zoll S; Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo namesti 2, 16610, Prague 6, Czech Republic. .
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Źródło:
Scientific reports [Sci Rep] 2022 Jul 26; Vol. 12 (1), pp. 12706. Date of Electronic Publication: 2022 Jul 26.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Deuterium Exchange Measurement*/methods
Trypanosoma*
Escherichia coli/genetics ; Hydrogen Deuterium Exchange-Mass Spectrometry ; Membrane Proteins ; Protein Conformation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Probing the Dynamics of Streptococcus pyogenes Cas9 Endonuclease Bound to the sgRNA Complex Using Hydrogen-Deuterium Exchange Mass Spectrometry.
Autorzy:
Zhdanova PV; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia.; Department of Natural Sciences, Novosibirsk State University, 630090 Novosibirsk, Russia.
Chernonosov AA; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia.
Prokhorova DV; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia.
Stepanov GA; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia.
Kanazhevskaya LY; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia.
Koval VV; Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences (SB RAS), 630090 Novosibirsk, Russia.; Department of Natural Sciences, Novosibirsk State University, 630090 Novosibirsk, Russia.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2022 Jan 20; Vol. 23 (3). Date of Electronic Publication: 2022 Jan 20.
Typ publikacji:
Journal Article
MeSH Terms:
CRISPR-Associated Protein 9/*chemistry
CRISPR-Associated Protein 9/*metabolism
RNA, Guide, CRISPR-Cas Systems/*metabolism
Streptococcus pyogenes/*enzymology
Hydrogen Deuterium Exchange-Mass Spectrometry ; Models, Molecular ; Molecular Dynamics Simulation ; Protein Binding ; Protein Conformation ; Protein Domains ; Streptococcus pyogenes/chemistry
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Hydrogen-Deuterium Exchange Mass Spectrometry Reveals a Novel Binding Region of a Neutralizing Fully Human Monoclonal Antibody to Anthrax Protective Antigen.
Autorzy:
Fang M; Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, OK 73019, USA.
Wang Z; Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, OK 73019, USA.
Norris K; Department of Arthritis and Clinical Immunology, Oklahoma Medical Research Foundation, 825 NE 13th St., Oklahoma City, OK 73104, USA.
James JA; Department of Arthritis and Clinical Immunology, Oklahoma Medical Research Foundation, 825 NE 13th St., Oklahoma City, OK 73104, USA.; Department of Microbiology and Immunology, Oklahoma University Health Sciences Center, 940 Stanton L. Young Blvd, Oklahoma City, OK 73104, USA.; Department of Medicine and Pathology, Oklahoma University Health Sciences Center, 1000 Stanton L. Young Blvd, Oklahoma City, OK 73104, USA.
Wu S; Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, OK 73019, USA.
Smith K; Department of Arthritis and Clinical Immunology, Oklahoma Medical Research Foundation, 825 NE 13th St., Oklahoma City, OK 73104, USA.
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Źródło:
Toxins [Toxins (Basel)] 2022 Jan 25; Vol. 14 (2). Date of Electronic Publication: 2022 Jan 25.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Antibodies, Monoclonal/*chemistry
Antibodies, Neutralizing/*chemistry
Antigens, Bacterial/*immunology
Bacterial Toxins/*immunology
Antibodies, Monoclonal/immunology ; Antibodies, Neutralizing/immunology ; Epitope Mapping ; Epitopes/immunology ; Humans ; Hydrogen Deuterium Exchange-Mass Spectrometry
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Integrative Study of the Structural and Dynamical Properties of a KirBac3.1 Mutant: Functional Implication of a Highly Conserved Tryptophan in the Transmembrane Domain.
Autorzy:
Fagnen C; IMPMC, UMR 7590, CNRS, Muséum National d'Histoire Naturelle, Sorbonne Université, 75005 Paris, France.; Laboratoire de Biologie et Pharmacologie Appliquée, Ecole Normale Supérieure Paris-Saclay, 4 Ave. des Sciences, 91190 Gif-sur-Yvette, France.
Bannwarth L; IMPMC, UMR 7590, CNRS, Muséum National d'Histoire Naturelle, Sorbonne Université, 75005 Paris, France.
Oubella I; IMPMC, UMR 7590, CNRS, Muséum National d'Histoire Naturelle, Sorbonne Université, 75005 Paris, France.
Zuniga D; IMPMC, UMR 7590, CNRS, Muséum National d'Histoire Naturelle, Sorbonne Université, 75005 Paris, France.
Haouz A; Institut Pasteur, C2RT-Plate-Forme de Cristallographie CNRS-UMR3528, 75724 Paris, France.
Forest E; CNRS, IBS, CEA, University Grenoble Alpes, 38044 Grenoble, France.
Scala R; CNRS UMR7370, LP2M, Labex ICST, Faculté de Médecine, University Côte d'Azur, 06560 Nice, France.
Bendahhou S; CNRS UMR7370, LP2M, Labex ICST, Faculté de Médecine, University Côte d'Azur, 06560 Nice, France.
De Zorzi R; Department of Chemical and Pharmaceutical Sciences, University of Trieste, Via Licio Giorgeri 1, 34127 Trieste, Italy.
Perahia D; Laboratoire de Biologie et Pharmacologie Appliquée, Ecole Normale Supérieure Paris-Saclay, 4 Ave. des Sciences, 91190 Gif-sur-Yvette, France.
Vénien-Bryan C; IMPMC, UMR 7590, CNRS, Muséum National d'Histoire Naturelle, Sorbonne Université, 75005 Paris, France.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2021 Dec 29; Vol. 23 (1). Date of Electronic Publication: 2021 Dec 29.
Typ publikacji:
Journal Article
MeSH Terms:
Conserved Sequence*
Mutation/*genetics
Potassium Channels, Inwardly Rectifying/*chemistry
Potassium Channels, Inwardly Rectifying/*genetics
Tryptophan/*chemistry
Amino Acid Sequence ; Crystallography, X-Ray ; Hydrogen Deuterium Exchange-Mass Spectrometry ; Ion Channel Gating ; Mutant Proteins/chemistry ; Mutant Proteins/metabolism ; Protein Domains ; Protein Interaction Maps ; Protein Structure, Secondary
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
The Glitazone Class of Drugs as Carbonic Anhydrase Inhibitors-A Spin-Off Discovery from Fragment Screening.
Autorzy:
Mueller SL; Griffith Institute for Drug Discovery, Griffith University, Nathan, Brisbane, QLD 4111, Australia.; ARC Centre for Fragment-Based Design, Griffith University, Nathan, Brisbane, QLD 4111, Australia.; CSIRO, Biomedical Manufacturing Program, Parkville, Melbourne, VIC 3052, Australia.
Chrysanthopoulos PK; Griffith Institute for Drug Discovery, Griffith University, Nathan, Brisbane, QLD 4111, Australia.
Halili MA; Griffith Institute for Drug Discovery, Griffith University, Nathan, Brisbane, QLD 4111, Australia.; ARC Centre for Fragment-Based Design, Griffith University, Nathan, Brisbane, QLD 4111, Australia.
Hepburn C; Waters Australia Pty Ltd., Rydalmere, NSW 2116, Australia.
Nebl T; CSIRO, Biomedical Manufacturing Program, Parkville, Melbourne, VIC 3052, Australia.
Supuran CT; Dipartimento Neurofarba, Sezione di Scienze Farmaceutiche Nutraceutiche, Università Degli Studi di Firenze, Sesto Fiorentino, 50019 Florence, Italy.
Nocentini A; Dipartimento Neurofarba, Sezione di Scienze Farmaceutiche Nutraceutiche, Università Degli Studi di Firenze, Sesto Fiorentino, 50019 Florence, Italy.
Peat TS; CSIRO, Biomedical Manufacturing Program, Parkville, Melbourne, VIC 3052, Australia.
Poulsen SA; Griffith Institute for Drug Discovery, Griffith University, Nathan, Brisbane, QLD 4111, Australia.; ARC Centre for Fragment-Based Design, Griffith University, Nathan, Brisbane, QLD 4111, Australia.
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Źródło:
Molecules (Basel, Switzerland) [Molecules] 2021 May 18; Vol. 26 (10). Date of Electronic Publication: 2021 May 18.
Typ publikacji:
Journal Article
MeSH Terms:
Drug Discovery*
Drug Evaluation, Preclinical*
Carbonic Anhydrase Inhibitors/*analysis
Carbonic Anhydrase Inhibitors/*pharmacology
Thiazolidinediones/*analysis
Thiazolidinediones/*pharmacology
Carbonic Anhydrase Inhibitors/chemistry ; Carbonic Anhydrases/chemistry ; Crystallography, X-Ray ; Humans ; Hydrogen Deuterium Exchange-Mass Spectrometry ; Models, Molecular ; Thiazolidinediones/chemistry
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Structure and dynamics of the CGRP receptor in apo and peptide-bound forms.
Autorzy:
Josephs TM; Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Victoria, Australia.
Belousoff MJ; Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Victoria, Australia.
Liang YL; Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Victoria, Australia.
Piper SJ; Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Victoria, Australia.
Cao J; Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Victoria, Australia.
Garama DJ; Hudson Institute of Medical Research, Clayton 3168, Victoria, Australia.; Department of Molecular and Translational Science, Monash University, Clayton 3168, Victoria, Australia.
Leach K; Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Victoria, Australia.
Gregory KJ; Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Victoria, Australia.
Christopoulos A; Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Victoria, Australia.
Hay DL; Department of Pharmacology and Toxicology, University of Otago, Dunedin 9054, New Zealand.
Danev R; Graduate School of Medicine, University of Tokyo, N415, 7-3-1 Hongo, Bunkyo-ku, 113-0033 Tokyo, Japan. .
Wootten D; Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Victoria, Australia. .
Sexton PM; Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Victoria, Australia. .
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Źródło:
Science (New York, N.Y.) [Science] 2021 Apr 09; Vol. 372 (6538). Date of Electronic Publication: 2021 Feb 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Calcitonin Gene-Related Peptide/*chemistry
Receptors, Calcitonin Gene-Related Peptide/*chemistry
Receptors, Calcitonin Gene-Related Peptide/*metabolism
Animals ; Apoproteins/chemistry ; Apoproteins/metabolism ; Calcitonin Gene-Related Peptide/metabolism ; Calcitonin Receptor-Like Protein/chemistry ; Cell Line ; Cell Membrane/metabolism ; Cryoelectron Microscopy ; GTP-Binding Protein alpha Subunits, Gs/chemistry ; GTP-Binding Protein alpha Subunits, Gs/metabolism ; Humans ; Hydrogen Deuterium Exchange-Mass Spectrometry ; Ligands ; Models, Molecular ; Moths ; Protein Binding ; Protein Conformation ; Protein Interaction Domains and Motifs ; Protein Structure, Secondary ; Receptor Activity-Modifying Protein 1/chemistry ; Receptor Activity-Modifying Protein 1/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
High intracellular stability of the spidroin N-terminal domain in spite of abundant amyloidogenic segments revealed by in-cell hydrogen/deuterium exchange mass spectrometry.
Autorzy:
Kaldmäe M; Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Biomedicum, Solna, Sweden.
Leppert A; Department of Neurobiology, Care Sciences and Society, Center for Alzheimer Research, Division of Neurogeriatrics, Karolinska Institutet, Huddinge, Sweden.
Chen G; Department of Neurobiology, Care Sciences and Society, Center for Alzheimer Research, Division of Neurogeriatrics, Karolinska Institutet, Huddinge, Sweden.
Sarr M; Department of Neurobiology, Care Sciences and Society, Center for Alzheimer Research, Division of Neurogeriatrics, Karolinska Institutet, Huddinge, Sweden.
Sahin C; Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Biomedicum, Solna, Sweden.
Nordling K; Department of Neurobiology, Care Sciences and Society, Center for Alzheimer Research, Division of Neurogeriatrics, Karolinska Institutet, Huddinge, Sweden.
Kronqvist N; Department of Neurobiology, Care Sciences and Society, Center for Alzheimer Research, Division of Neurogeriatrics, Karolinska Institutet, Huddinge, Sweden.
Gonzalvo-Ulla M; Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Biomedicum, Solna, Sweden.; Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA.
Fritz N; Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Biomedicum, Solna, Sweden.
Abelein A; Department of Neurobiology, Care Sciences and Society, Center for Alzheimer Research, Division of Neurogeriatrics, Karolinska Institutet, Huddinge, Sweden.
Laίn S; Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Biomedicum, Solna, Sweden.
Biverstål H; Department of Neurobiology, Care Sciences and Society, Center for Alzheimer Research, Division of Neurogeriatrics, Karolinska Institutet, Huddinge, Sweden.; Department of Physical Organic Chemistry, Latvian Institute of Organic Synthesis, Riga, Latvia.
Jörnvall H; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Biomedicum, Solna, Sweden.
Lane DP; Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Biomedicum, Solna, Sweden.
Rising A; Department of Neurobiology, Care Sciences and Society, Center for Alzheimer Research, Division of Neurogeriatrics, Karolinska Institutet, Huddinge, Sweden.; Department of Anatomy, Physiology and Biochemistry, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Johansson J; Department of Neurobiology, Care Sciences and Society, Center for Alzheimer Research, Division of Neurogeriatrics, Karolinska Institutet, Huddinge, Sweden.
Landreh M; Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Biomedicum, Solna, Sweden.
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Źródło:
The FEBS journal [FEBS J] 2020 Jul; Vol. 287 (13), pp. 2823-2833. Date of Electronic Publication: 2019 Dec 20.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Amyloid/*chemistry
Amyloidogenic Proteins/*chemistry
Fibroins/*chemistry
Hydrogen Deuterium Exchange-Mass Spectrometry/*methods
Amino Acid Sequence ; Amyloid/metabolism ; Amyloidogenic Proteins/metabolism ; Animals ; Binding Sites ; Crystallography, X-Ray ; Fibroins/metabolism ; Hydrogen-Ion Concentration ; Models, Molecular ; Protein Binding ; Protein Conformation ; Protein Multimerization ; Spiders
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
New Structural insights into Kir channel gating from molecular simulations, HDX-MS and functional studies.
Autorzy:
Fagnen C; Sorbonne Université, UMR 7590, CNRS, Muséum National d'Histoire Naturelle, Institut de Minéralogie, Physique des Matériaux et Cosmochimie, IMPMC, 75005, Paris, France.; Laboratoire de Biologie et de Pharmacologie Appliquée, Ecole Normale Supérieure Paris-Saclay, Centre National de la Recherche Scientifique, 91190, Gif-sur-Yvette, France.
Bannwarth L; Sorbonne Université, UMR 7590, CNRS, Muséum National d'Histoire Naturelle, Institut de Minéralogie, Physique des Matériaux et Cosmochimie, IMPMC, 75005, Paris, France.
Oubella I; Sorbonne Université, UMR 7590, CNRS, Muséum National d'Histoire Naturelle, Institut de Minéralogie, Physique des Matériaux et Cosmochimie, IMPMC, 75005, Paris, France.
Forest E; University Grenoble Alpes, IBS, F-38044 Grenoble, France, CNRS, IBS, F-38044 Grenoble, France, CEA,IBS, F-38044, Grenoble, France.
De Zorzi R; Department of Chemical and Pharmaceutical Sciences, University of Trieste, Via Licio Giorgeri 1, 34127, Trieste, Italy.
de Araujo A; Sorbonne Université, UMR 7590, CNRS, Muséum National d'Histoire Naturelle, Institut de Minéralogie, Physique des Matériaux et Cosmochimie, IMPMC, 75005, Paris, France.; Laboratoire de Biologie et de Pharmacologie Appliquée, Ecole Normale Supérieure Paris-Saclay, Centre National de la Recherche Scientifique, 91190, Gif-sur-Yvette, France.
Mhoumadi Y; Sorbonne Université, UMR 7590, CNRS, Muséum National d'Histoire Naturelle, Institut de Minéralogie, Physique des Matériaux et Cosmochimie, IMPMC, 75005, Paris, France.; Laboratoire de Biologie et de Pharmacologie Appliquée, Ecole Normale Supérieure Paris-Saclay, Centre National de la Recherche Scientifique, 91190, Gif-sur-Yvette, France.
Bendahhou S; CNRS UMR7370, LP2M, Université Côte d'Azur, Faculté de Médecine, Nice, France.
Perahia D; Laboratoire de Biologie et de Pharmacologie Appliquée, Ecole Normale Supérieure Paris-Saclay, Centre National de la Recherche Scientifique, 91190, Gif-sur-Yvette, France.
Vénien-Bryan C; Sorbonne Université, UMR 7590, CNRS, Muséum National d'Histoire Naturelle, Institut de Minéralogie, Physique des Matériaux et Cosmochimie, IMPMC, 75005, Paris, France. .
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Źródło:
Scientific reports [Sci Rep] 2020 May 21; Vol. 10 (1), pp. 8392. Date of Electronic Publication: 2020 May 21.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Potassium Channels, Inwardly Rectifying/*chemistry
Potassium Channels, Inwardly Rectifying/*metabolism
Computer Simulation ; Hydrogen Deuterium Exchange-Mass Spectrometry ; Ion Channel Gating ; Lipid Bilayers/chemistry ; Molecular Dynamics Simulation ; Protein Conformation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
HDX and Native Mass Spectrometry Reveals the Different Structural Basis for Interaction of the Staphylococcal Pathogenicity Island Repressor Stl with Dimeric and Trimeric Phage dUTPases.
Autorzy:
Nyíri K; Department of Applied Biotechnology and Food Sciences, Budapest University of Technology and Economics, 1111 Budapest, Hungary. .; Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, 1117 Budapest, Hungary. .
Harris MJ; Department of Chemistry, King's College London, Britannia House, London SE1 1DB, UK.
Matejka J; Department of Applied Biotechnology and Food Sciences, Budapest University of Technology and Economics, 1111 Budapest, Hungary.; Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, 1117 Budapest, Hungary.
Ozohanics O; Institute of Organic Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, 1117 Budapest, Hungary.; Department of Medical Biochemistry, Semmelweis University, 1085 Budapest, Hungary.
Vékey K; Institute of Organic Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, 1117 Budapest, Hungary.
Borysik AJ; Department of Chemistry, King's College London, Britannia House, London SE1 1DB, UK. .
Vértessy BG; Department of Applied Biotechnology and Food Sciences, Budapest University of Technology and Economics, 1111 Budapest, Hungary. .; Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, 1117 Budapest, Hungary. .
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Źródło:
Biomolecules [Biomolecules] 2019 Sep 14; Vol. 9 (9). Date of Electronic Publication: 2019 Sep 14.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Bacterial Proteins/*metabolism
Pyrophosphatases/*metabolism
Staphylococcus Phages/*enzymology
Staphylococcus aureus/*pathogenicity
Bacterial Proteins/chemistry ; Genomic Islands ; Hydrogen Deuterium Exchange-Mass Spectrometry ; Models, Molecular ; Protein Binding ; Protein Conformation ; Protein Multimerization ; Pyrophosphatases/chemistry ; Pyrophosphatases/genetics ; Staphylococcus Phages/chemistry ; Staphylococcus Phages/genetics ; Staphylococcus aureus/metabolism ; Staphylococcus aureus/virology ; Viral Proteins/chemistry ; Viral Proteins/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Actin Cytoskeletal Reorganization Function of JRAB/MICAL-L2 Is Fine-tuned by Intramolecular Interaction between First LIM Zinc Finger and C-terminal Coiled-coil Domains.
Autorzy:
Miyake K; Department of Biochemistry, Tokushima University Graduate School of Medical Sciences, Tokushima, 770-8503, Japan.
Sakane A; Department of Biochemistry, Tokushima University Graduate School of Medical Sciences, Tokushima, 770-8503, Japan. .; Department of Interdisciplinary Researches for Medicine and Photonics, Institute of Post-LED Photonics, Tokushima University, Tokushima, 770-8506, Japan. .
Tsuchiya Y; Intelligent Bioinformatics Research Team, Artificial Intelligence Research Center, The National Institute of Advanced Industrial Science and Technology, Tokyo, 135-0064, Japan.; National Institutes of Biomedical Innovation, Health and Nutrition, Ibaraki, 567-0085, Japan.
Sagawa I; Support Center for Advanced Medical Sciences, Tokushima University Graduate School of Biomedical Sciences, Tokushima, 770-8503, Japan.
Tomida Y; Department of Biochemistry, Tokushima University Graduate School of Medical Sciences, Tokushima, 770-8503, Japan.; Department of Neurobiology and Therapeutics, Faculty of Pharmaceutical Sciences, Tokushima University, Tokushima, 770-8503, Japan.
Kasahara J; Department of Neurobiology and Therapeutics, Faculty of Pharmaceutical Sciences, Tokushima University, Tokushima, 770-8503, Japan.
Imoto I; Division of Molecular Genetics, Aichi Cancer Center Research Institute, Nagoya, 464-8681, Japan.; Department of Cancer Genetics, Nagoya University Graduate School of Medicine, Nagoya, 466-8550, Japan.
Watanabe S; Thermo Fisher Scientific, Chromatography & MS Department, Application Group, LC-MS, Yokohama, 221-0022, Japan.
Higo D; Thermo Fisher Scientific, Chromatography & MS Department, Application Group, LC-MS, Yokohama, 221-0022, Japan.
Mizuguchi K; National Institutes of Biomedical Innovation, Health and Nutrition, Ibaraki, 567-0085, Japan.
Sasaki T; Department of Biochemistry, Tokushima University Graduate School of Medical Sciences, Tokushima, 770-8503, Japan. .
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Źródło:
Scientific reports [Sci Rep] 2019 Sep 05; Vol. 9 (1), pp. 12794. Date of Electronic Publication: 2019 Sep 05.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Actins/*physiology
Cytoskeleton/*physiology
Microfilament Proteins/*physiology
3T3 Cells ; Animals ; Hydrogen Deuterium Exchange-Mass Spectrometry ; Mice ; Microfilament Proteins/chemistry ; Microfilament Proteins/genetics ; Models, Molecular ; Mutation ; Protein Domains ; Structure-Activity Relationship ; Zinc Fingers/physiology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Insight into the Structural Dynamics of the Lysenin During Prepore-to-Pore Transition Using Hydrogen-Deuterium Exchange Mass Spectrometry.
Autorzy:
Kulma M; Institute of Biochemistry and Biophysics, Polish Academy of Sciences, 5A Pawinskiego St., 02-106 Warsaw, Poland. .
Dadlez M; Institute of Biochemistry and Biophysics, Polish Academy of Sciences, 5A Pawinskiego St., 02-106 Warsaw, Poland.
Kwiatkowska K; The Nencki Institute of Experimental Biology, Polish Academy of Sciences, 3 Pasteur St., 02-093 Warsaw, Poland.
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Źródło:
Toxins [Toxins (Basel)] 2019 Aug 07; Vol. 11 (8). Date of Electronic Publication: 2019 Aug 07.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Hydrogen Deuterium Exchange-Mass Spectrometry/*methods
Toxins, Biological/*chemistry
Crystallography, X-Ray ; Mutation ; Protein Conformation ; Thermodynamics ; Toxins, Biological/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
deMix: Decoding Deuterated Distributions from Heterogeneous Protein States via HDX-MS.
Autorzy:
Na S; Dept. of Computer Science, Hanyang University, Seoul, 04763, South Korea.
Lee JJ; Graduate School of Pharmaceutical Sciences, College of Pharmacy, Ewha Womans University, Seoul, 03760, South Korea.
Joo JWJ; Dept. of Computer Science and Engineering, Dongguk University-Seoul, Seoul, 04620, South Korea.
Lee KJ; Graduate School of Pharmaceutical Sciences, College of Pharmacy, Ewha Womans University, Seoul, 03760, South Korea.
Paek E; Dept. of Computer Science, Hanyang University, Seoul, 04763, South Korea. .
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Źródło:
Scientific reports [Sci Rep] 2019 Feb 28; Vol. 9 (1), pp. 3176. Date of Electronic Publication: 2019 Feb 28.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Software*
Hydrogen Deuterium Exchange-Mass Spectrometry/*methods
Proteins/*ultrastructure
Protein Conformation ; Proteins/chemistry
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Wyświetlanie 1-20 z 237

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