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Wyszukujesz frazę ""Immunoprecipitation"" wg kryterium: Temat


Tytuł :
Application of topic models to a compendium of ChIP-Seq datasets uncovers recurrent transcriptional regulatory modules.
Autorzy :
Yang G; Department of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University, Atlanta, GA 30322, USA.; Department of Cardiovascular Medicine, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, 710061, P. R. China.
Ma A; Department of Cardiovascular Medicine, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, 710061, P. R. China.
Qin ZS; Department of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University, Atlanta, GA 30322, USA.
Chen L; Department of Medicine, Indiana University School of Medicine, Indianapolis, IN 46202, USA.; Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN 46202, USA.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2020 Apr 15; Vol. 36 (8), pp. 2352-2358.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Chromatin Immunoprecipitation Sequencing*
Transcription Factors*/genetics
Binding Sites ; Chromatin Immunoprecipitation ; Databases, Genetic ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
Chromatin integration labeling for mapping DNA-binding proteins and modifications with low input.
Autorzy :
Handa T; Cell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama, Japan.
Harada A; Division of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Japan.
Maehara K; Division of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Japan.
Sato S; Institute for Quantitative Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, Japan.
Nakao M; Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama, Japan.
Goto N; Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama, Japan.
Kurumizaka H; Institute for Quantitative Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, Japan.
Ohkawa Y; Division of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Japan. .
Kimura H; Cell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama, Japan. .; Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama, Japan. .
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Źródło :
Nature protocols [Nat Protoc] 2020 Oct; Vol. 15 (10), pp. 3334-3360. Date of Electronic Publication: 2020 Aug 17.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Chromatin Immunoprecipitation Sequencing/*methods
Chromosome Mapping/*methods
DNA-Binding Proteins/*analysis
Animals ; Cell Line ; Cell Line, Tumor ; Chromatin/metabolism ; Chromatin Immunoprecipitation/methods ; Epigenesis, Genetic/genetics ; Epigenomics/methods ; Gene Library ; Genome ; Genomics ; High-Throughput Nucleotide Sequencing/methods ; Histones/metabolism ; Humans ; Mice ; Protein Processing, Post-Translational/genetics ; Sequence Analysis, DNA/methods ; Transcription Factors/metabolism ; Transposases/metabolism
Czasopismo naukowe
Tytuł :
ChIPseqSpikeInFree: a ChIP-seq normalization approach to reveal global changes in histone modifications without spike-in.
Autorzy :
Jin H; Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Kasper LH; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Larson JD; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Wu G; Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Baker SJ; Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Zhang J; Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Fan Y; Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2020 Feb 15; Vol. 36 (4), pp. 1270-1272.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Chromatin Immunoprecipitation Sequencing*
Histone Code*
Chromatin ; Chromatin Immunoprecipitation ; Retrospective Studies ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
ProSampler: an ultrafast and accurate motif finder in large ChIP-seq datasets for combinatory motif discovery.
Autorzy :
Li Y; School of Mathematics, Shandong University, Jinan 250100, China.; Department of Bioinformatics and Genomics, College of Computing and Informatics, The University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Ni P; Department of Bioinformatics and Genomics, College of Computing and Informatics, The University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Zhang S; College of Computer and Information Engineering, Tianjin Normal University, Tianjin 300387, China.
Li G; School of Mathematics, Shandong University, Jinan 250100, China.; Department of Bioinformatics and Genomics, College of Computing and Informatics, The University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Su Z; Department of Bioinformatics and Genomics, College of Computing and Informatics, The University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2019 Nov 01; Vol. 35 (22), pp. 4632-4639.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Chromatin Immunoprecipitation Sequencing*
Software*
Algorithms ; Binding Sites ; Chromatin Immunoprecipitation
Czasopismo naukowe
Tytuł :
epic2 efficiently finds diffuse domains in ChIP-seq data.
Autorzy :
Stovner EB; Department of Computer Science, K.G. Jebsen Center for Genetic Epidemiology, Norwegian University of Science and Technology, Trondheim 7013, Norway.; Department of Clinical and Molecular Medicine, K.G. Jebsen Center for Genetic Epidemiology, Norwegian University of Science and Technology, Trondheim 7013, Norway.; Bioinformatics Core Facility, K.G. Jebsen Center for Genetic Epidemiology, Norwegian University of Science and Technology, Trondheim 7013, Norway.; Department of Public Health and Nursing, K.G. Jebsen Center for Genetic Epidemiology, Norwegian University of Science and Technology, Trondheim 7013, Norway.
Sætrom P; Department of Computer Science, K.G. Jebsen Center for Genetic Epidemiology, Norwegian University of Science and Technology, Trondheim 7013, Norway.; Department of Clinical and Molecular Medicine, K.G. Jebsen Center for Genetic Epidemiology, Norwegian University of Science and Technology, Trondheim 7013, Norway.; Bioinformatics Core Facility, K.G. Jebsen Center for Genetic Epidemiology, Norwegian University of Science and Technology, Trondheim 7013, Norway.; Department of Public Health and Nursing, K.G. Jebsen Center for Genetic Epidemiology, Norwegian University of Science and Technology, Trondheim 7013, Norway.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2019 Nov 01; Vol. 35 (21), pp. 4392-4393.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Chromatin Immunoprecipitation Sequencing*
High-Throughput Nucleotide Sequencing*
Chromatin Immunoprecipitation ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
Characterizing protein-DNA binding event subtypes in ChIP-exo data.
Autorzy :
Yamada N; Department of Biochemistry & Molecular Biology and Center for Eukaryotic Gene Regulation, The Pennsylvania State University, University Park, PA, USA.
Lai WKM; Department of Biochemistry & Molecular Biology and Center for Eukaryotic Gene Regulation, The Pennsylvania State University, University Park, PA, USA.
Farrell N; Department of Biochemistry & Molecular Biology and Center for Eukaryotic Gene Regulation, The Pennsylvania State University, University Park, PA, USA.
Pugh BF; Department of Biochemistry & Molecular Biology and Center for Eukaryotic Gene Regulation, The Pennsylvania State University, University Park, PA, USA.
Mahony S; Department of Biochemistry & Molecular Biology and Center for Eukaryotic Gene Regulation, The Pennsylvania State University, University Park, PA, USA.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2019 Mar 15; Vol. 35 (6), pp. 903-913.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Chromatin Immunoprecipitation Sequencing*
Binding Sites ; Chromatin Immunoprecipitation ; DNA ; Nucleotide Motifs ; Protein Binding ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
MOWChIP-seq for low-input and multiplexed profiling of genome-wide histone modifications.
Autorzy :
Zhu B; Department of Chemical Engineering, Virginia Tech, Blacksburg, VA, USA.
Hsieh YP; Department of Chemical Engineering, Virginia Tech, Blacksburg, VA, USA.
Murphy TW; Department of Chemical Engineering, Virginia Tech, Blacksburg, VA, USA.
Zhang Q; Department of Chemical Engineering, Virginia Tech, Blacksburg, VA, USA.
Naler LB; Department of Chemical Engineering, Virginia Tech, Blacksburg, VA, USA.
Lu C; Department of Chemical Engineering, Virginia Tech, Blacksburg, VA, USA. .
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Źródło :
Nature protocols [Nat Protoc] 2019 Dec; Vol. 14 (12), pp. 3366-3394. Date of Electronic Publication: 2019 Oct 30.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Chromatin Immunoprecipitation Sequencing/*instrumentation
Chromatin Immunoprecipitation Sequencing/*methods
Microfluidics/*instrumentation
Animals ; Chromatin/genetics ; Chromatin Immunoprecipitation/methods ; Epigenesis, Genetic/genetics ; Epigenomics/methods ; High-Throughput Nucleotide Sequencing/methods ; High-Throughput Screening Assays/instrumentation ; High-Throughput Screening Assays/methods ; Histone Code/genetics ; Histone Code/physiology ; Histones/metabolism ; Humans ; Microfluidics/methods ; Protein Processing, Post-Translational ; Sequence Analysis, DNA/methods
Czasopismo naukowe
Tytuł :
A comparison of three approaches for the discovery of novel tripartite attachment complex proteins in Trypanosoma brucei.
Autorzy :
Baudouin HCM; Institute of Cell Biology, University of Bern, Bern, Switzerland.; Graduate School for Cellular and Biomedical Sciences, University of Bern, Bern, Switzerland.
Pfeiffer L; Institute of Cell Biology, University of Bern, Bern, Switzerland.
Ochsenreiter T; Institute of Cell Biology, University of Bern, Bern, Switzerland.
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Źródło :
PLoS neglected tropical diseases [PLoS Negl Trop Dis] 2020 Sep 16; Vol. 14 (9), pp. e0008568. Date of Electronic Publication: 2020 Sep 16 (Print Publication: 2020).
Typ publikacji :
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Immunoprecipitation*
Two-Hybrid System Techniques*
DNA, Mitochondrial/*genetics
Protozoan Proteins/*genetics
Animals ; Cattle ; Cattle Diseases/parasitology ; DNA, Kinetoplast/metabolism ; Flagella/metabolism ; Genome, Mitochondrial/genetics ; Humans ; Mitochondria/genetics ; Mitochondria/physiology ; Trypanosoma brucei brucei/genetics ; Trypanosomiasis, African/veterinary
Czasopismo naukowe
Tytuł :
A Semiautomated ChIP-Seq Procedure for Large-scale Epigenetic Studies.
Autorzy :
Cayford J; Division of Vaccine Discovery, La Jolla Institute for Immunology.
Herrera-da la Mata S; Division of Vaccine Discovery, La Jolla Institute for Immunology.
Schmiedel BJ; Division of Vaccine Discovery, La Jolla Institute for Immunology.
Chandra V; Division of Vaccine Discovery, La Jolla Institute for Immunology.
Vijayanad P; Division of Vaccine Discovery, La Jolla Institute for Immunology.
Seumois G; Division of Vaccine Discovery, La Jolla Institute for Immunology; .
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Źródło :
Journal of visualized experiments : JoVE [J Vis Exp] 2020 Aug 13 (162). Date of Electronic Publication: 2020 Aug 13.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Video-Audio Media
MeSH Terms :
Chromatin Immunoprecipitation Sequencing*
Epigenomics/*methods
Chromatin/genetics ; Epigenesis, Genetic ; Histone Code ; Humans
Czasopismo naukowe
Tytuł :
Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications.
Autorzy :
Grzybowski AT; Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA.
Shah RN; Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA.; Division of the Biological Sciences, Pritzker School of Medicine, The University of Chicago, Chicago, IL, USA.
Richter WF; Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA.
Ruthenburg AJ; Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA. .; Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA. .
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Źródło :
Nature protocols [Nat Protoc] 2019 Dec; Vol. 14 (12), pp. 3275-3302. Date of Electronic Publication: 2019 Nov 13.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Chromatin Immunoprecipitation Sequencing/*methods
Sequence Analysis, DNA/*methods
Animals ; Antibody Specificity/immunology ; Caenorhabditis elegans/genetics ; Calibration ; Chromatin Immunoprecipitation/methods ; Computational Biology ; DNA ; Drosophila melanogaster/genetics ; Gene Library ; Genome ; High-Throughput Nucleotide Sequencing/methods ; Histones/genetics ; Histones/immunology ; Humans ; Nucleosomes/genetics ; Nucleosomes/immunology ; Protein Processing, Post-Translational ; Reproducibility of Results
Czasopismo naukowe
Tytuł :
Sensitivity in Detection of Antibodies to Nucleocapsid and Spike Proteins of Severe Acute Respiratory Syndrome Coronavirus 2 in Patients With Coronavirus Disease 2019.
Autorzy :
Burbelo PD; National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, Maryland, USA.
Riedo FX; Division of Infectious Diseases and Travel Medicine, Evergreen Health, Kirkland, Washington, USA.
Morishima C; Department of Laboratory Medicine, University of Washington, Seattle, Washington, USA.
Rawlings S; Division of Infectious Diseases and Global Public Health, San Diego Center for AIDS Research, University of California San Diego, San Diego, California, USA.
Smith D; Division of Infectious Diseases and Global Public Health, San Diego Center for AIDS Research, University of California San Diego, San Diego, California, USA.
Das S; Department of Laboratory Medicine, Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.
Strich JR; Critical Care Medicine Department, Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.
Chertow DS; Critical Care Medicine Department, Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.
Davey RT; Laboratory of Immunoregulation, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Cohen JI; Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
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Źródło :
The Journal of infectious diseases [J Infect Dis] 2020 Jun 29; Vol. 222 (2), pp. 206-213.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural
MeSH Terms :
Clinical Laboratory Techniques*
Immunoprecipitation*
Antibodies, Viral/*blood
Betacoronavirus/*immunology
Coronavirus Infections/*immunology
Nucleocapsid Proteins/*immunology
Pneumonia, Viral/*immunology
Spike Glycoprotein, Coronavirus/*immunology
Adult ; Coronavirus Infections/diagnosis ; Female ; Hot Temperature ; Humans ; Immunocompetence ; Immunocompromised Host ; Luciferases ; Male ; Middle Aged ; Pandemics ; Retrospective Studies ; Sensitivity and Specificity ; Time Factors
SCR Disease Name :
COVID-19
Czasopismo naukowe
Tytuł :
A parallelized, automated platform enabling individual or sequential ChIP of histone marks and transcription factors.
Autorzy :
Dainese R; School of Life Sciences, Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland.; Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland.
Gardeux V; School of Life Sciences, Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland.; Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland.
Llimos G; School of Life Sciences, Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland.; Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland.
Alpern D; School of Life Sciences, Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland.; Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland.
Jiang JY; School of Life Sciences, Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland.
Meireles-Filho ACA; School of Life Sciences, Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland.; Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland.
Deplancke B; School of Life Sciences, Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland; .; Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland.
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Źródło :
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2020 Jun 16; Vol. 117 (24), pp. 13828-13838. Date of Electronic Publication: 2020 May 27.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Automation/*methods
Chromatin Immunoprecipitation Sequencing/*methods
Histones/*metabolism
MEF2 Transcription Factors/*metabolism
Automation/instrumentation ; B-Lymphocytes/chemistry ; B-Lymphocytes/metabolism ; Cell Line, Tumor ; Chromatin Immunoprecipitation Sequencing/instrumentation ; Histones/chemistry ; Histones/genetics ; Humans ; MEF2 Transcription Factors/chemistry ; MEF2 Transcription Factors/genetics ; Protein Binding
Czasopismo naukowe
Tytuł :
Computational identification of cell-specific variable regions in ChIP-seq data.
Autorzy :
Andreani T; Faculty of Biology, Johannes Gutenberg University of Mainz, 55128 Mainz, Germany.; Institute of Molecular Biology (IMB), 55128 Mainz, Germany.
Albrecht S; Faculty of Biology, Johannes Gutenberg University of Mainz, 55128 Mainz, Germany.
Fontaine JF; Faculty of Biology, Johannes Gutenberg University of Mainz, 55128 Mainz, Germany.
Andrade-Navarro MA; Faculty of Biology, Johannes Gutenberg University of Mainz, 55128 Mainz, Germany.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 May 21; Vol. 48 (9), pp. e53.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Chromatin Immunoprecipitation Sequencing*
Transcription Factors/*metabolism
Animals ; Binding Sites ; Cell Line ; Cell Line, Tumor ; Chromatin/metabolism ; Embryonic Stem Cells/metabolism ; Evolution, Molecular ; Genetic Variation ; Genomics/methods ; Humans ; K562 Cells ; MCF-7 Cells ; Mice ; Nucleotides/analysis ; Principal Component Analysis ; Promoter Regions, Genetic ; R-Loop Structures
Czasopismo naukowe
Tytuł :
[Advances in assay for transposase-accessible chromatin with high-throughput sequencing].
Autorzy :
Wu J; National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, Guangzhou 510642, China.
Quan JP; National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, Guangzhou 510642, China.
Ye Y; National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, Guangzhou 510642, China.
Wu ZF; National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, Guangzhou 510642, China.
Yang J; National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, Guangzhou 510642, China.
Yang M; College of Animal Science and Technology, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China.
Zheng EQ; National Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, Guangzhou 510642, China.
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Źródło :
Yi chuan = Hereditas [Yi Chuan] 2020 Apr 20; Vol. 42 (4), pp. 333-346.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Chromatin Immunoprecipitation Sequencing*
High-Throughput Nucleotide Sequencing*
Chromatin/*chemistry
Transposases/*chemistry
Epigenesis, Genetic ; Nucleosomes ; Sequence Analysis, DNA ; Transcription Factors
Czasopismo naukowe
Tytuł :
[ATAC-seq and its applications in complex disease].
Autorzy :
Chen M; Department of Dermatology and Venerology, the First Affiliated Hospital of Anhui Medical University, Heifei 230022, China.
Zhang Z; Department of Dermatology and Venerology, Huashan Hospital Affiliated to Fudan University, Shanghai 201100, China.
Meng ZY; Department of Dermatology and Venerology, the First Affiliated Hospital of Anhui Medical University, Heifei 230022, China.
Zhang XJ; Department of Dermatology and Venerology, the First Affiliated Hospital of Anhui Medical University, Heifei 230022, China.
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Źródło :
Yi chuan = Hereditas [Yi Chuan] 2020 Apr 20; Vol. 42 (4), pp. 347-353.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Chromatin Immunoprecipitation Sequencing*
High-Throughput Nucleotide Sequencing*
Chromatin/*chemistry
Transposases/*chemistry
Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
XL-DNase-seq: improved footprinting of dynamic transcription factors.
Autorzy :
Oh KS; Laboratory of Molecular Biology and Immunology, National Institute on Aging, National Institutes of Health, 251 Bayview Boulevard, Baltimore, MD, 21224, USA.
Ha J; Laboratory of Molecular Biology and Immunology, National Institute on Aging, National Institutes of Health, 251 Bayview Boulevard, Baltimore, MD, 21224, USA.
Baek S; Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, 41 Library Drive, Bethesda, MD, 20892, USA.
Sung MH; Laboratory of Molecular Biology and Immunology, National Institute on Aging, National Institutes of Health, 251 Bayview Boulevard, Baltimore, MD, 21224, USA. .
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Źródło :
Epigenetics & chromatin [Epigenetics Chromatin] 2019 Jun 04; Vol. 12 (1), pp. 30. Date of Electronic Publication: 2019 Jun 04.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Chromatin Immunoprecipitation Sequencing/*methods
DNA Footprinting/*methods
Animals ; Chromatin/genetics ; Chromatin/physiology ; Chromatin Immunoprecipitation/methods ; Deoxyribonuclease I ; Deoxyribonucleases ; Genomics ; High-Throughput Nucleotide Sequencing/methods ; Humans ; Mice ; Sequence Analysis, DNA/methods ; Transcription Factors/metabolism ; Transcription Factors/physiology
Czasopismo naukowe
Tytuł :
Facilitating Analysis of Publicly Available ChIP-Seq Data for Integrative Studies.
Autorzy :
Diwadkar AR; Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, US.
Kan M; Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, US.
Himes BE; Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, US.
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Źródło :
AMIA ... Annual Symposium proceedings. AMIA Symposium [AMIA Annu Symp Proc] 2020 Mar 04; Vol. 2019, pp. 371-379. Date of Electronic Publication: 2020 Mar 04 (Print Publication: 2019).
Typ publikacji :
Journal Article
MeSH Terms :
Chromatin Immunoprecipitation Sequencing*
Datasets as Topic*
Receptors, Glucocorticoid/*metabolism
Transcription Factors/*metabolism
Base Sequence ; Gene Expression Regulation ; Genome-Wide Association Study ; Glucocorticoids/metabolism ; Glucocorticoids/pharmacology ; Humans ; Integrative Medicine ; Quality Control ; Receptors, Glucocorticoid/genetics ; Transcription Factors/drug effects
Czasopismo naukowe
Tytuł :
DNA Fragment Agarose Gel Electrophoresis for Chromatin Immunoprecipitation (ChIP).
Autorzy :
Isono M; Department of Genetics, Research Institute of Environmental Medicine, Nagoya University, Furo-cho, Chikusaku, Nagoya, Japan.
Hashimoto S; Department of Genetics, Research Institute of Environmental Medicine, Nagoya University, Furo-cho, Chikusaku, Nagoya, Japan. .
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Źródło :
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2020; Vol. 2119, pp. 201-211.
Typ publikacji :
Journal Article
MeSH Terms :
Chromatin Immunoprecipitation*
DNA*/analysis
DNA*/chemistry
DNA*/isolation & purification
DNA Fragmentation*
Animals ; Cell Line ; Electrophoresis, Agar Gel ; Humans
Czasopismo naukowe
Tytuł :
ChIPSummitDB: a ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them.
Autorzy :
Czipa E; Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Egyetem tér 1, Debrecen H-4032, Hungary.
Schiller M; Agricultural Genomics and Bioinformatics Group, Agricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert út 4, Gödöllő H-2100, Hungary.
Nagy T; Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Egyetem tér 1, Debrecen H-4032, Hungary.
Kontra L; Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Egyetem tér 1, Debrecen H-4032, Hungary.; Agricultural Genomics and Bioinformatics Group, Agricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert út 4, Gödöllő H-2100, Hungary.
Steiner L; UD-GenoMed Medical Genomic Technologies Research & Development Services Ltd., Nagyerdei krt. 98, Debrecen H-4032, Hungary.
Koller J; Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Egyetem tér 1, Debrecen H-4032, Hungary.; Semmelweis University, Institute of Genomic Medicines and Rare Disorders, Üllői út 78/B, Budapest, H-1082, Hungary.
Pálné-Szén O; Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Egyetem tér 1, Debrecen H-4032, Hungary.
Barta E; Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Egyetem tér 1, Debrecen H-4032, Hungary.; Agricultural Genomics and Bioinformatics Group, Agricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert út 4, Gödöllő H-2100, Hungary.
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Źródło :
Database : the journal of biological databases and curation [Database (Oxford)] 2020 Jan 01; Vol. 2020.
Typ publikacji :
Dataset; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Chromatin Immunoprecipitation Sequencing*
Sequence Analysis, DNA*
Transcription Factors*/chemistry
Transcription Factors*/genetics
Transcription Factors*/metabolism
Binding Sites/*genetics
Genomics/methods ; High-Throughput Nucleotide Sequencing ; Humans ; Protein Binding/genetics
Czasopismo naukowe
Tytuł :
A new era of long-read sequencing for cancer genomics.
Autorzy :
Sakamoto Y; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan.
Sereewattanawoot S; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan.
Suzuki A; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan. .
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Źródło :
Journal of human genetics [J Hum Genet] 2020 Jan; Vol. 65 (1), pp. 3-10. Date of Electronic Publication: 2019 Sep 02.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Chromatin Immunoprecipitation Sequencing/*methods
Genomics/*methods
Genomics/*trends
Neoplasms/*genetics
RNA-Seq/*methods
Chromatin Immunoprecipitation Sequencing/trends ; DNA Methylation ; Epigenome ; Haplotypes ; Humans ; Protein Isoforms/genetics ; RNA-Seq/trends ; Transcriptome/genetics
Czasopismo naukowe

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