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Tytuł:
A semiparametric model for between-subject attributes: Applications to beta-diversity of microbiome data.
Autorzy:
Liu J; Department of Family Medicine and Public Health, UC San Diego, San Diego, California, USA.; Stein Institute for Research on Aging, UC San Diego, San Diego, California, USA.
Zhang X; Department of Family Medicine and Public Health, UC San Diego, San Diego, California, USA.
Chen T; Department of Mathematics, University of Toledo, Toledo, Ohio, USA.
Wu T; Department of Family Medicine and Public Health, UC San Diego, San Diego, California, USA.; Stein Institute for Research on Aging, UC San Diego, San Diego, California, USA.
Lin T; Department of Family Medicine and Public Health, UC San Diego, San Diego, California, USA.
Jiang L; Department of Family Medicine and Public Health, UC San Diego, San Diego, California, USA.; Center for Microbiome Innovation, UC San Diego, San Diego, California, USA.
Lang S; Department of Medicine, UC San Diego, San Diego, California, USA.
Liu L; Department of Family Medicine and Public Health, UC San Diego, San Diego, California, USA.
Natarajan L; Department of Family Medicine and Public Health, UC San Diego, San Diego, California, USA.
Tu JX; Physical Medicine and Rehabilitation, University of Virginia Health System, Charlottesville, Virginia, USA.
Kosciolek T; Department of Pediatrics, UC San Diego, San Diego, California, USA.; Małopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland.
Morton J; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, USA.
Nguyen TT; Department of Psychiatry, UC San Diego, San Diego, California, USA.; Stein Institute for Research on Aging, UC San Diego, San Diego, California, USA.
Schnabl B; Department of Medicine, UC San Diego, San Diego, California, USA.
Knight R; Department of Pediatrics, UC San Diego, San Diego, California, USA.; Department of Computer Science and Engineering, UC San Diego, San Diego, California, USA.; Department of Bioengineering, UC San Diego, San Diego, California, USA.; Center for Microbiome Innovation, UC San Diego, San Diego, California, USA.
Feng C; Department of Biostatistics and Computational Biology, University of Rochester, Rochester, New York, USA.
Zhong Y; Department of Biostatistics, University of Michigan, Ann Arbor, Michigan, USA.
Tu XM; Department of Family Medicine and Public Health, UC San Diego, San Diego, California, USA.; Stein Institute for Research on Aging, UC San Diego, San Diego, California, USA.
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Źródło:
Biometrics [Biometrics] 2022 Sep; Vol. 78 (3), pp. 950-962. Date of Electronic Publication: 2021 Jun 08.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Microbiota*/genetics
Cross-Sectional Studies ; High-Throughput Nucleotide Sequencing/methods ; Humans
Czasopismo naukowe
Tytuł:
Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data.
Autorzy:
Jiang L; Division of Biostatistics, University of California San Diego, La Jolla, California, USA.
Haiminen N; IBM T. J. Watson Research Center, Yorktown Heights, New York, USA.
Carrieri AP; IBM Research, The Hartree Center, Warrington, UK.
Huang S; Center for Microbiome Innovation, Jacobs School of Engineering, UC San Diego, La Jolla, California, USA.; Department of Pediatrics, University of California San Diego, La Jolla, California, USA.
Vázquez-Baeza Y; Center for Microbiome Innovation, Jacobs School of Engineering, UC San Diego, La Jolla, California, USA.; Department of Pediatrics, University of California San Diego, La Jolla, California, USA.
Parida L; IBM T. J. Watson Research Center, Yorktown Heights, New York, USA.
Kim HC; Scalable Knowledge Intelligence, IBM Research-Almaden, San Jose, California, USA.
Swafford AD; Center for Microbiome Innovation, Jacobs School of Engineering, UC San Diego, La Jolla, California, USA.
Knight R; Center for Microbiome Innovation, Jacobs School of Engineering, UC San Diego, La Jolla, California, USA.; Department of Pediatrics, University of California San Diego, La Jolla, California, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, California, USA.; Department of Bioengineering, University of California San Diego, La Jolla, California, USA.
Natarajan L; Division of Biostatistics, University of California San Diego, La Jolla, California, USA.
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Źródło:
Biometrics [Biometrics] 2022 Sep; Vol. 78 (3), pp. 1155-1167. Date of Electronic Publication: 2021 May 19.
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Microbiota*
Algorithms ; Reproducibility of Results
Czasopismo naukowe
Tytuł:
Baseline microbiome and metabolome are associated with response to ITIS diet in an exploratory trial in patients with rheumatoid arthritis.
Autorzy:
Coras R; Department of Medicine, School of Medicine, University of California San Diego, San Diego, California, USA.; Department of Medicine, Autonomous University of Barcelona, Barcelona, Spain.
Martino C; Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, San Diego, California, USA.; Department of Pediatrics, School of Medicine, University of California San Diego, San Diego, California, USA.; Bioinformatics and Systems Biology Program, University of California San Diego, San Diego, California, USA.
Gauglitz JM; Department of Pharmacology, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, California, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, San Diego, California, USA.
Cedola F; Department of Medicine, School of Medicine, University of California San Diego, San Diego, California, USA.
Tripathi A; Department of Pediatrics, School of Medicine, University of California San Diego, San Diego, California, USA.; Department of Pharmacology, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, California, USA.; Graduate Program in Biological Sciences, School of Biological Sciences, UCSD, Division of Biological Sciences, University of California San Diego, San Diego, California, USA.
Jarmusch AK; Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, San Diego, California, USA.; Department of Pediatrics, School of Medicine, University of California San Diego, San Diego, California, USA.
Alharthi M; Department of Medicine, School of Medicine, University of California San Diego, San Diego, California, USA.
Fernandez-Bustamante M; Department of Medicine, School of Medicine, University of California San Diego, San Diego, California, USA.
Agustin-Perez M; Department of Medicine, School of Medicine, University of California San Diego, San Diego, California, USA.
Singh A; Department of Medicine, School of Medicine, University of California San Diego, San Diego, California, USA.
Choi SI; Department of Medicine, School of Medicine, University of California San Diego, San Diego, California, USA.
Rivera T; Department of Medicine, School of Medicine, University of California San Diego, San Diego, California, USA.
Nguyen K; Department of Medicine, School of Medicine, University of California San Diego, San Diego, California, USA.
Shekhtman T; Department of Psychiatry, University of California San Diego, San Diego, California, USA.
Holt T; Department of Psychiatry, University of California San Diego, San Diego, California, USA.
Lee S; Department of Medicine, School of Medicine, University of California San Diego, San Diego, California, USA.
Golshan S; Department of Psychiatry, University of California San Diego, San Diego, California, USA.
Dorrestein PC; Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, San Diego, California, USA.; Department of Pediatrics, School of Medicine, University of California San Diego, San Diego, California, USA.; Department of Pharmacology, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, California, USA.; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, San Diego, California, USA.
Knight R; Center for Microbiome Innovation, Joan and Irwin Jacobs School of Engineering, University of California San Diego, San Diego, California, USA.; Department of Pediatrics, School of Medicine, University of California San Diego, San Diego, California, USA.; Department of Computer Science and Engineering, University of California San Diego, San Diego, California, USA.; Department of Bioengineering, University of California San Diego, San Diego, California, USA.
Guma M; Department of Medicine, School of Medicine, University of California San Diego, San Diego, California, USA.; Department of Medicine, Autonomous University of Barcelona, Barcelona, Spain.; Department of Medicine, VA San Diego Healthcare System, San Diego, California, USA.
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Źródło:
Clinical and translational medicine [Clin Transl Med] 2022 Jul; Vol. 12 (7), pp. e959.
Typ publikacji:
Letter; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Arthritis, Rheumatoid*
Microbiota*
Clinical Trials as Topic ; Diet ; Humans ; Metabolome
Raport
Tytuł:
The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study).
Autorzy:
Bai-Tong SS; Division of Neonatology, Rady Children's Hospital, University of California, San Diego, San Diego, CA, USA.; Division of Neonatology, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.
Thoemmes MS; Department of Pediatrics and Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA.
Weldon KC; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.; Collaborative Mass Spectrometry Innovation Center, University of California, San Diego, La Jolla, CA, USA.
Motazavi D; Division of Allergy and Immunology, Rady Children's Hospital, University of California, San Diego, San Diego, CA, USA.
Kitsen J; Division of Allergy and Immunology, Rady Children's Hospital, University of California, San Diego, San Diego, CA, USA.
Hansen S; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.
Furst A; Division of Neonatology, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.
Geng B; Division of Allergy and Immunology, Rady Children's Hospital, University of California, San Diego, San Diego, CA, USA.
Song SJ; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.
Gilbert JA; Department of Pediatrics and Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.
Bode L; Division of Neonatology, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Mother-Milk-Infant Center of Research Excellence (MOMI CORE), University of California, San Diego, La Jolla, CA, USA.
Dorrestein PC; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.; Collaborative Mass Spectrometry Innovation Center, University of California, San Diego, La Jolla, CA, USA.
Knight R; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.; Collaborative Mass Spectrometry Innovation Center, University of California, San Diego, La Jolla, CA, USA.
Leibel SA; Division of Allergy and Immunology, Rady Children's Hospital, University of California, San Diego, San Diego, CA, USA. .; Herbert Wertheim School of Public Health and Human Longevity Science, University of California, San Diego, La Jolla, CA, USA. .
Leibel SL; Division of Neonatology, Rady Children's Hospital, University of California, San Diego, San Diego, CA, USA. .; Division of Neonatology, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA. .
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Źródło:
Scientific reports [Sci Rep] 2022 Apr 19; Vol. 12 (1), pp. 6437. Date of Electronic Publication: 2022 Apr 19.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Asthma*
Microbiota*
Humans ; Infant ; Infant, Newborn ; Infant, Premature ; Metabolome ; Pilot Projects ; Prospective Studies
Czasopismo naukowe
Tytuł:
Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts.
Autorzy:
Wu Z; Metabolic Epidemiology Branch, Division of Cancer Epidemiology & Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Hullings AG; Metabolic Epidemiology Branch, Division of Cancer Epidemiology & Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Ghanbari R; Digestive Oncology Research Center, Digestive Disease Research Institute, Tehran University of Medical Science, Tehran, Iran.
Etemadi A; Metabolic Epidemiology Branch, Division of Cancer Epidemiology & Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Wan Y; Frederick National Laboratory for Cancer Research/Leidos Biomedical Research Laboratory, Inc., Frederick, MD, USA.; Cancer Genomics Research Laboratory, Division of Cancer Epidemiology & Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Zhu B; Frederick National Laboratory for Cancer Research/Leidos Biomedical Research Laboratory, Inc., Frederick, MD, USA.; Cancer Genomics Research Laboratory, Division of Cancer Epidemiology & Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Poustchi H; Digestive Oncology Research Center, Digestive Disease Research Institute, Tehran University of Medical Science, Tehran, Iran.
Fahraji BB; Department of Epidemiology, School of Public Health, Shahid Sadoughi University of Medical Sciences, Yazd, Iran.
Sakhvidi MJZ; Department of Occupational Health, School of Public Health, Shahid Sadoughi University of Medical Sciences, Yazd, Iran.
Shi J; Biostatistics Branch, Division of Cancer Epidemiology & Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Knight R; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA.
Malekzadeh R; Digestive Oncology Research Center, Digestive Disease Research Institute, Tehran University of Medical Science, Tehran, Iran. .
Sinha R; Metabolic Epidemiology Branch, Division of Cancer Epidemiology & Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA. .
Vogtmann E; Metabolic Epidemiology Branch, Division of Cancer Epidemiology & Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
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Źródło:
BMC microbiology [BMC Microbiol] 2021 Nov 22; Vol. 21 (1), pp. 324. Date of Electronic Publication: 2021 Nov 22.
Typ publikacji:
Comparative Study; Journal Article; Research Support, N.I.H., Intramural
MeSH Terms:
Microbiota*
Bacteria/*isolation & purification
Feces/*microbiology
Mouth/*microbiology
Specimen Handling/*methods
Adult ; Bacteria/classification ; Bacteria/genetics ; Cetylpyridinium ; DNA, Bacterial/genetics ; Drug Combinations ; Female ; Humans ; Iran ; Male ; Middle Aged ; Prospective Studies ; Quaternary Ammonium Compounds ; RNA, Ribosomal, 16S/genetics ; Specimen Handling/instrumentation
Czasopismo naukowe
Tytuł:
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.
Autorzy:
Dillon MR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Bolyen E; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Adamov A; Laboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zürich, Zürich, Switzerland.
Belk A; Department of Animal Sciences, Cell and Molecular Biology Special Academic Unit, Colorado State University, Fort Collins, Colorado, United States of America.
Borsom E; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Burcham Z; Department of Animal Sciences, Cell and Molecular Biology Special Academic Unit, Colorado State University, Fort Collins, Colorado, United States of America.
Debelius JW; Centre for Translational Microbiome Research, Department of Microbiology, Tumor, and Cancer Biology, Karolinska Institutet, Stockholm, Sweden.
Deel H; Department of Animal Sciences, Cell and Molecular Biology Special Academic Unit, Colorado State University, Fort Collins, Colorado, United States of America.
Emmons A; Department of Animal Sciences, Cell and Molecular Biology Special Academic Unit, Colorado State University, Fort Collins, Colorado, United States of America.
Estaki M; Department of Pediatrics, University of California San Diego, San Diego, California, United States of America.
Herman C; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Keefe CR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Morton JT; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, United States of America.
Oliveira RRM; Environmental Genomics, Instituto Tecnológico Vale, Belém, Pará, Brazil.
Sanchez A; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Simard A; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Vázquez-Baeza Y; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, San Diego, California, United States of America.
Ziemski M; Laboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zürich, Zürich, Switzerland.
Miwa HE; Academic Programs, Foundation for Advanced Education in the Sciences at the National Institutes of Health, Bethesda, Maryland, United States of America.
Kerere TA; Academic Programs, Foundation for Advanced Education in the Sciences at the National Institutes of Health, Bethesda, Maryland, United States of America.
Coote C; Academic Programs, Foundation for Advanced Education in the Sciences at the National Institutes of Health, Bethesda, Maryland, United States of America.
Bonneau R; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, United States of America.
Knight R; Department of Pediatrics, University of California San Diego, San Diego, California, United States of America.; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, San Diego, California, United States of America.
Oliveira G; Environmental Genomics, Instituto Tecnológico Vale, Belém, Pará, Brazil.
Gopalasingam P; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridgeshire, United Kingdom.
Kaehler BD; School of Science, University of New South Wales, Canberra, Australia.
Cope EK; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Metcalf JL; Department of Animal Sciences, Cell and Molecular Biology Special Academic Unit, Colorado State University, Fort Collins, Colorado, United States of America.
Robeson Ii MS; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas, United States of America.
Bokulich NA; Laboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zürich, Zürich, Switzerland.
Caporaso JG; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2021 Jun 24; Vol. 17 (6), pp. e1009056. Date of Electronic Publication: 2021 Jun 24 (Print Publication: 2021).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
COVID-19*
Computational Biology*/education
Computational Biology*/organization & administration
Microbiota*
Feedback ; Humans ; SARS-CoV-2
Czasopismo naukowe
Tytuł:
The microbiome and human cancer.
Autorzy:
Sepich-Poore GD; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.
Zitvogel L; Gustave Roussy Cancer Campus (GRCC), Equipe Labellisée-Ligue Nationale contre le Cancer, Villejuif, France.; Institut National de la Santé et de la Recherche Medicale (INSERM) U1015, Villejuif, France.; Université Paris-Sud, Université Paris-Saclay, Gustave Roussy, Villejuif, France.; Center of Clinical Investigations in Biotherapies of Cancer (CICBT) 1428, Villejuif, France.
Straussman R; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Hasty J; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.; BioCircuits Institute, University of California, San Diego, La Jolla, CA, USA.; Molecular Biology Section, Division of Biological Science, University of California, San Diego, La Jolla, CA, USA.
Wargo JA; Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.; Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Knight R; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA. .; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, USA.
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Źródło:
Science (New York, N.Y.) [Science] 2021 Mar 26; Vol. 371 (6536).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Review
MeSH Terms:
Bacterial Physiological Phenomena*
Microbiota*
Neoplasms/*microbiology
Neoplasms/*therapy
Adaptive Immunity ; Anti-Bacterial Agents/therapeutic use ; Antineoplastic Agents/therapeutic use ; Bacteria/genetics ; Carcinogenesis ; Gastrointestinal Microbiome ; Genetic Engineering ; Host Microbial Interactions ; Humans ; Immunomodulation ; Immunotherapy ; Lymphoid Tissue/immunology ; Neoplasms/immunology ; Oncolytic Virotherapy ; Tumor Microenvironment ; Virus Physiological Phenomena
Czasopismo naukowe
Tytuł:
Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study.
Autorzy:
Burcham ZM; Department of Animal Sciences, Colorado State University, Fort Collins, CO, 80525, USA.
Garneau NL; Genetics of Taste Lab, Denver Museum of Nature & Science, Denver, CO, 80205, USA.
Comstock SS; Department of Food Science and Human Nutrition, Michigan State University, East Lansing, MI, 48824, USA.
Tucker RM; Department of Food Science and Human Nutrition, Michigan State University, East Lansing, MI, 48824, USA.
Knight R; Department of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, 92093, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, 92093, USA.; Department of Bioengineering, University of California San Diego, La Jolla, CA, 92093, USA.
Metcalf JL; Department of Animal Sciences, Colorado State University, Fort Collins, CO, 80525, USA. .
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Corporate Authors:
Genetics of Taste Lab Citizen Scientists
Źródło:
Scientific reports [Sci Rep] 2020 Feb 07; Vol. 10 (1), pp. 2133. Date of Electronic Publication: 2020 Feb 07.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Microbiota/*physiology
Mouth/*microbiology
Adolescent ; Adult ; Aged ; Bacteria/growth & development ; Biodiversity ; Cardiovascular Diseases/etiology ; Cardiovascular Diseases/microbiology ; Child ; Crowdsourcing/methods ; Dental Caries/etiology ; Dental Caries/microbiology ; Diet/methods ; Dysbiosis/complications ; Dysbiosis/microbiology ; Female ; Humans ; Life Style ; Male ; Middle Aged ; Obesity/etiology ; Obesity/microbiology ; Periodontal Diseases/etiology ; Periodontal Diseases/microbiology ; Young Adult
Czasopismo naukowe
Tytuł:
Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome.
Autorzy:
Jung CE; Department of Obstetrics, Gynecology & Reproductive Sciences, University of California, San Diego, 92093, USA.
Chopyk J; Department of Pathology, University of California, San Diego, CA, 92093, USA.
Shin JH; Department of Pathology, University of California, San Diego, CA, 92093, USA.
Lukacz ES; Department of Obstetrics, Gynecology & Reproductive Sciences, University of California, San Diego, 92093, USA.
Brubaker L; Department of Obstetrics, Gynecology & Reproductive Sciences, University of California, San Diego, 92093, USA.
Schwanemann LK; Department of Pathology, University of California, San Diego, CA, 92093, USA.
Knight R; Departments of Pediatrics, Bioengineering, and Computer Science and Engineering, University of California, San Diego, 92093, USA.
Wolfe AJ; Department of Microbiology and Immunology, Loyola University Chicago, Maywood, IL, 601534, USA.
Pride DT; Department of Pathology, University of California, San Diego, CA, 92093, USA. .; Department of Medicine, University of California, San Diego, CA, 92093, USA. .
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Źródło:
Scientific reports [Sci Rep] 2019 Sep 16; Vol. 9 (1), pp. 13409. Date of Electronic Publication: 2019 Sep 16.
Typ publikacji:
Evaluation Study; Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Benchmarking*
Microbiota*
Bacteria/*isolation & purification
Preservation, Biological/*methods
RNA, Ribosomal, 16S/*urine
Specimen Handling/*methods
Bacteria/classification ; Bacteria/genetics ; Female ; Humans ; RNA, Ribosomal, 16S/genetics ; Reproducibility of Results ; Temperature
Czasopismo naukowe
Tytuł:
The impact of skin care products on skin chemistry and microbiome dynamics.
Autorzy:
Bouslimani A; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, San Diego, USA.
da Silva R; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, San Diego, USA.
Kosciolek T; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.
Janssen S; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.; Department for Pediatric Oncology, Hematology and Clinical Immunology, University Children's Hospital, Medical Faculty, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany.
Callewaert C; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.; Center for Microbial Ecology and Technology, Ghent University, 9000, Ghent, Belgium.
Amir A; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.
Dorrestein K; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, San Diego, USA.
Melnik AV; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, San Diego, USA.
Zaramela LS; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.
Kim JN; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.
Humphrey G; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.
Schwartz T; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.
Sanders K; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.
Brennan C; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.
Luzzatto-Knaan T; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, San Diego, USA.
Ackermann G; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.
McDonald D; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.
Zengler K; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA.; Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA, 92307, USA.; Department of Bioengineering, University of California, San Diego, La Jolla, CA, 92093, USA.
Knight R; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA. .; Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA, 92307, USA. .; Department of Bioengineering, University of California, San Diego, La Jolla, CA, 92093, USA. .; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, 92093, USA. .
Dorrestein PC; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, San Diego, USA. .; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92037, USA. .; Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA, 92307, USA. .; Department of Pharmacology, University of California, San Diego, La Jolla, CA, 92037, USA. .
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Źródło:
BMC biology [BMC Biol] 2019 Jun 12; Vol. 17 (1), pp. 47. Date of Electronic Publication: 2019 Jun 12.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Cosmetics/*adverse effects
Microbiota/*drug effects
Skin/*drug effects
Skin Care/*adverse effects
Adult ; Cosmetics/classification ; Female ; Humans ; Male ; Skin/chemistry ; Skin/microbiology
Czasopismo naukowe
Tytuł:
Ground beef microbiome changes with antimicrobial decontamination interventions and product storage.
Autorzy:
Weinroth MD; Department of Animal Sciences, Colorado State University, Fort Collins, Colorado, United States of America.
Britton BC; Department of Food Science, Purdue University, West Lafayette, Indiana, United States of America.
McCullough KR; North American Meat Institute, Washington D.C., United States of America.
Martin JN; Department of Animal Sciences, Colorado State University, Fort Collins, Colorado, United States of America.
Geornaras I; Department of Animal Sciences, Colorado State University, Fort Collins, Colorado, United States of America.
Knight R; Departments of Pediatrics, Bioengineering, and Computer Science and Engineering, and Center for Microbiome Innovation, University of California San Diego, La Jolla, California, United States of America.
Belk KE; Department of Animal Sciences, Colorado State University, Fort Collins, Colorado, United States of America.
Metcalf JL; Department of Animal Sciences, Colorado State University, Fort Collins, Colorado, United States of America.
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Źródło:
PloS one [PLoS One] 2019 Jun 05; Vol. 14 (6), pp. e0217947. Date of Electronic Publication: 2019 Jun 05 (Print Publication: 2019).
Typ publikacji:
Journal Article
MeSH Terms:
Decontamination*
Food Preservation*
Microbiota*/drug effects
Anti-Infective Agents/*pharmacology
Red Meat/*microbiology
Antioxidants/pharmacology ; Bacteria/drug effects ; Bacteria/growth & development ; Biodiversity ; Biomass ; Colony Count, Microbial ; Phylogeny ; Sequence Analysis, DNA ; Time Factors
Czasopismo naukowe
Tytuł:
The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus.
Autorzy:
Vrbanac A; Division of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, 9500 Gilman Dr, MC 0760, La Jolla, CA, 92093-0760, USA.
Riestra AM; Division of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, 9500 Gilman Dr, MC 0760, La Jolla, CA, 92093-0760, USA.
Coady A; Division of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, 9500 Gilman Dr, MC 0760, La Jolla, CA, 92093-0760, USA.
Knight R; Division of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, 9500 Gilman Dr, MC 0760, La Jolla, CA, 92093-0760, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA.
Nizet V; Division of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, 9500 Gilman Dr, MC 0760, La Jolla, CA, 92093-0760, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
Patras KA; Division of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, 9500 Gilman Dr, MC 0760, La Jolla, CA, 92093-0760, USA. .
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Źródło:
BMC microbiology [BMC Microbiol] 2018 Nov 26; Vol. 18 (1), pp. 197. Date of Electronic Publication: 2018 Nov 26.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Microbiota*
Bacteria/*isolation & purification
Mice/*microbiology
Streptococcal Infections/*microbiology
Streptococcus agalactiae/*growth & development
Vagina/*microbiology
Animals ; Bacteria/classification ; Bacteria/genetics ; Bacteria/growth & development ; Disease Models, Animal ; Female ; Humans ; Mice, Inbred C57BL ; RNA, Ribosomal, 16S/genetics ; Streptococcus agalactiae/genetics ; Streptococcus agalactiae/isolation & purification
Czasopismo naukowe
Tytuł:
The human microbiome in evolution.
Autorzy:
Davenport ER; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.
Sanders JG; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.
Song SJ; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.
Amato KR; Department of Anthropology, Northwestern University, Evanston, IL, USA.
Clark AG; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.
Knight R; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA. .; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA. .; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA. .
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Źródło:
BMC biology [BMC Biol] 2017 Dec 27; Vol. 15 (1), pp. 127. Date of Electronic Publication: 2017 Dec 27.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Review
MeSH Terms:
Biological Evolution*
Microbiota/*physiology
Animals ; Gastrointestinal Microbiome/physiology ; Host Specificity ; Humans ; Phylogeny
Czasopismo naukowe
Tytuł:
The sponge microbiome project.
Autorzy:
Moitinho-Silva L; Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052, Australia.
Nielsen S; Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052, Australia.
Amir A; Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.
Gonzalez A; Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.
Ackermann GL; Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.
Cerrano C; Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, 60131, Italy.
Astudillo-Garcia C; School of Biological Sciences, University of Auckland, Auckland, New Zealand.
Easson C; Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, Dania Beach, FL 33004, USA.
Sipkema D; Wageningen University, Laboratory of Microbiology, Stippeneng 4, 6708 WE Wageningen, The Netherlands.
Liu F; State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, P.R. China.
Steinert G; Wageningen University, Laboratory of Microbiology, Stippeneng 4, 6708 WE Wageningen, The Netherlands.
Kotoulas G; Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion, Greece.
McCormack GP; Zoology, School of Natural Sciences, Ryan Institute, National University of Ireland Galway, University Rd., Galway, Ireland.
Feng G; State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, P.R. China.
Bell JJ; School of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand.
Vicente J; Hawaii Institute of Marine Biology, 46-007 Lilipuna Road, Kaneohe, HI 96744-1346.
Björk JR; Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556, USA.
Montoya JM; Ecological Networks and Global Change Group, Theoretical and Experimental Ecology Station, CNRS and Paul Sabatier University, Moulis, France.
Olson JB; Department of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487, USA.
Reveillaud J; INRA, UMR1309 CMAEE; Cirad, UMR15 CMAEE, 34398 Montpellier, France.
Steindler L; Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel.
Pineda MC; Australian Institute of Marine Science (AIMS), Townsville, 4810, Queensland, Australia.
Marra MV; Zoology, School of Natural Sciences, Ryan Institute, National University of Ireland Galway, University Rd., Galway, Ireland.
Ilan M; Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel.
Taylor MW; School of Biological Sciences, University of Auckland, Auckland, New Zealand.
Polymenakou P; Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion, Greece.
Erwin PM; Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington NC 28409, USA.
Schupp PJ; Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky and University Oldenburg, Schleusenstr. 1, 26382 Wilhelmshaven, Germany.
Simister RL; Department of Microbiology and Immunology, University of British Columbia, Canada, V6T 1Z3.
Knight R; Department of Pediatrics, University of California - San Diego, La Jolla, CA 92093, USA.; Department of Computer Science and Engineering, and Center for Microbiome Innovation, University of California - San Diego, La Jolla, CA 92093, USA.
Thacker RW; Department of Ecology and Evolution, Stony Brook University, Stony Brook NY 11794, USA.
Costa R; Institute for Bioengineering and Biosciences (IBB), Department of Bioengineering, IST, Universidade de Lisboa, Lisbon, Portugal.
Hill RT; Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, 701 East Pratt Street, Baltimore, MD 21202, USA.
Lopez-Legentil S; Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington NC 28409, USA.
Dailianis T; Hellenic Centre for Marine Research, Institute of Marine Biology, Biotechnology and Aquaculture, Thalassocosmos, 71500 Heraklion, Greece.
Ravasi T; KAUST Environmental Epigenetic Program (KEEP), Division of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
Hentschel U; RD3 Marine Microbiology, GEOMAR Helmholtz Centre for Ocean Research, Kiel, and Christian-Albrechts-University of Kiel, Germany.
Li Z; State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, P.R. China.
Webster NS; Australian Institute of Marine Science (AIMS), Townsville, 4810, Queensland, Australia.; Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD, Australia.
Thomas T; Centre for Marine Bio-Innovation and School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, 2052, Australia.
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Źródło:
GigaScience [Gigascience] 2017 Oct 01; Vol. 6 (10), pp. 1-7.
Typ publikacji:
Dataset; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Microbiota*
Porifera/*microbiology
Animals ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł:
Genetic influences on the human oral microbiome.
Autorzy:
Demmitt BA; Department of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, 80304, USA.; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, CO, USA.
Corley RP; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, CO, USA.; Department of Psychology and Neuroscience, University of Colorado Boulder, Boulder, CO, USA.
Huibregtse BM; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, CO, USA.; Department of Psychology and Neuroscience, University of Colorado Boulder, Boulder, CO, USA.
Keller MC; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, CO, USA.; Department of Psychology and Neuroscience, University of Colorado Boulder, Boulder, CO, USA.
Hewitt JK; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, CO, USA.; Department of Psychology and Neuroscience, University of Colorado Boulder, Boulder, CO, USA.
McQueen MB; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, CO, USA.; Department of Integrative Physiology and Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, CO, USA.
Knight R; UC San Diego Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA, 92093, USA.; Department of Pediatrics, University of California, San Diego, La Jolla, CA, 92093, USA.; Department of Computer Science & Engineering, University of California, San Diego, La Jolla, CA, 92093, USA.
McDermott I; Department of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, 80304, USA.
Krauter KS; Department of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, 80304, USA. .; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, CO, USA. .
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Źródło:
BMC genomics [BMC Genomics] 2017 Aug 24; Vol. 18 (1), pp. 659. Date of Electronic Publication: 2017 Aug 24.
Typ publikacji:
Journal Article
MeSH Terms:
Microbiota/*genetics
Mouth/*microbiology
Chromosomes, Human/genetics ; Female ; Genetic Loci/genetics ; Genome-Wide Association Study ; Genomics ; Humans ; Male ; Phenotype ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Tytuł:
MICROBIOME. A unified initiative to harness Earth's microbiomes.
Autorzy:
Alivisatos AP; See the supplementary materials for authors' affiliations.
Blaser MJ
Brodie EL
Chun M
Dangl JL
Donohue TJ
Dorrestein PC
Gilbert JA
Green JL
Jansson JK
Knight R
Maxon ME
McFall-Ngai MJ
Miller JF
Pollard KS
Ruby EG
Taha SA
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Corporate Authors:
Unified Microbiome Initiative Consortium
Źródło:
Science (New York, N.Y.) [Science] 2015 Oct 30; Vol. 350 (6260), pp. 507-8. Date of Electronic Publication: 2015 Oct 28.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Microbiota*
Soil Microbiology*
Water Microbiology*
Earth, Planet ; Ecosystem ; Interdisciplinary Studies ; Oceans and Seas ; Seawater/microbiology
Czasopismo naukowe
Tytuł:
ConStrains identifies microbial strains in metagenomic datasets.
Autorzy:
Luo C; Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, Massachusetts, USA.; Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA.; Center for Computational and Integrative Biology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA.
Knight R; Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, Colorado, USA.; Howard Hughes Medical Institute, Boulder, Colorado, USA.
Siljander H; Children's Hospital, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.; Research Programs Unit, Diabetes and Obesity, University of Helsinki, Helsinki, Finland.
Knip M; Children's Hospital, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.; Research Programs Unit, Diabetes and Obesity, University of Helsinki, Helsinki, Finland.; Folkhälsan Research Center, Helsinki, Finland.; Department of Pediatrics, Tampere University Hospital, Tampere, Finland.
Xavier RJ; Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, Massachusetts, USA.; Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA.; Center for Computational and Integrative Biology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA.; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Gevers D; Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, Massachusetts, USA.
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Źródło:
Nature biotechnology [Nat Biotechnol] 2015 Oct; Vol. 33 (10), pp. 1045-52. Date of Electronic Publication: 2015 Sep 07.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Algorithms*
Bacteria/*genetics
Genome, Bacterial/*genetics
Metagenomics/*methods
Microbiota/*genetics
Sequence Analysis, DNA/*methods
Bacteria/classification ; Chromosome Mapping/methods ; Databases, Genetic ; Datasets as Topic ; Species Specificity
Czasopismo naukowe
Tytuł:
Why microbiome treatments could pay off soon.
Autorzy:
Knight R; University of California, San Diego.
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Źródło:
Nature [Nature] 2015 Feb 26; Vol. 518 (7540), pp. S5.
Typ publikacji:
Journal Article
MeSH Terms:
Microbiota/*physiology
Obesity/*microbiology
Obesity/*therapy
Animals ; Computer Simulation ; Crowdsourcing ; Disease Models, Animal ; Germ-Free Life ; Humans ; Kwashiorkor/etiology ; Kwashiorkor/genetics ; Kwashiorkor/microbiology ; Kwashiorkor/therapy ; Mice ; Microbiota/genetics ; Obesity/etiology ; Sequence Analysis, DNA ; Thinness/microbiology ; Time Factors
Czasopismo naukowe
Tytuł:
Predictive modeling of gingivitis severity and susceptibility via oral microbiota.
Autorzy:
Huang S; 1] Single-Cell Center, CAS Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao, China [2] University of Chinese Academy of Sciences, Beijing, China.
Li R; Departments of Microbiology Capability Organization and Oral Care Clinical Operation, Procter & Gamble Innovation Center, Beijing, China.
Zeng X; Single-Cell Center, CAS Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao, China.
He T; Department of Oral Care Clinical Operation, Procter & Gamble Mason Business Center, Cincinnati, OH, USA.
Zhao H; Departments of Microbiology Capability Organization and Oral Care Clinical Operation, Procter & Gamble Innovation Center, Beijing, China.
Chang A; Departments of Microbiology Capability Organization and Oral Care Clinical Operation, Procter & Gamble Innovation Center, Beijing, China.
Bo C; Single-Cell Center, CAS Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao, China.
Chen J; Single-Cell Center, CAS Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao, China.
Yang F; Oral Center, Qingdao Municipal Hospital, Qingdao, China.
Knight R; Departments of Chemistry and Biochemistry and Computer Science, BioFrontiers Institute, Howard Hughes Medical Institute, University of Colorado at Boulder, Boulder, CO, USA.
Liu J; Departments of Microbiology Capability Organization and Oral Care Clinical Operation, Procter & Gamble Innovation Center, Beijing, China.
Davis C; Department of Global Product Stewardship, Procter & Gamble Winton Hill Business Center, Cincinnati, OH, USA.
Xu J; Single-Cell Center, CAS Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics, Qingdao, China.
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Źródło:
The ISME journal [ISME J] 2014 Sep; Vol. 8 (9), pp. 1768-80. Date of Electronic Publication: 2014 Mar 20.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Microbiota*
Gingivitis/*microbiology
Mouth/*microbiology
Adult ; Bacteria/classification ; Bacteria/genetics ; Bacteria/isolation & purification ; Disease Progression ; Female ; Gingivitis/diagnosis ; Humans ; Male ; Models, Biological ; Periodontal Index ; Phenotype
Czasopismo naukowe
Tytuł:
Longitudinal analysis of microbial interaction between humans and the indoor environment.
Autorzy:
Lax S; Department of Ecology and Evolution, University of Chicago, 1101 E 57th Street, Chicago, IL 60637, USA. Institute for Genomic and Systems Biology, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, USA.
Smith DP; Department of Ecology and Evolution, University of Chicago, 1101 E 57th Street, Chicago, IL 60637, USA. Institute for Genomic and Systems Biology, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, USA. Alkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX 77030, USA.
Hampton-Marcell J; Department of Ecology and Evolution, University of Chicago, 1101 E 57th Street, Chicago, IL 60637, USA. Institute for Genomic and Systems Biology, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, USA.
Owens SM; Institute for Genomic and Systems Biology, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, USA. Computation Institute, University of Chicago, Chicago, IL 60637, USA.
Handley KM; Department of Ecology and Evolution, University of Chicago, 1101 E 57th Street, Chicago, IL 60637, USA. Institute for Genomic and Systems Biology, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, USA.
Scott NM; Department of Ecology and Evolution, University of Chicago, 1101 E 57th Street, Chicago, IL 60637, USA. Institute for Genomic and Systems Biology, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, USA.
Gibbons SM; Institute for Genomic and Systems Biology, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, USA. Graduate Program in Biophysical Sciences, University of Chicago, Chicago, IL 60637, USA.
Larsen P; Department of Bioscience, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, USA. Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, USA.
Shogan BD; Department of Surgery, University of Chicago Medicine, 5841 South Maryland Avenue, Chicago, IL 60637, USA.
Weiss S; Biofrontiers Institute, University of Colorado, 3415 Colorado Avenue, Boulder, CO 80304, USA. Department of Chemical and Biological Engineering, University of Colorado at Boulder, Boulder, CO 80304, USA.
Metcalf JL; Biofrontiers Institute, University of Colorado, 3415 Colorado Avenue, Boulder, CO 80304, USA.
Ursell LK; Biofrontiers Institute, University of Colorado, 3415 Colorado Avenue, Boulder, CO 80304, USA. Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, CO 80304, USA.
Vázquez-Baeza Y; Biofrontiers Institute, University of Colorado, 3415 Colorado Avenue, Boulder, CO 80304, USA. Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, CO 80304, USA. Department of Computer Science, University of Colorado at Boulder, Boulder, CO 80304, USA.
Van Treuren W; Biofrontiers Institute, University of Colorado, 3415 Colorado Avenue, Boulder, CO 80304, USA.
Hasan NA; CosmosID, 387 Technology Drive, Suite 3119, College Park, MD 20742, USA. Center for Bioinformatics and Computational Biology, University of Maryland Institute for Advanced Computer Studies, University of Maryland College Park, College Park, MD 20742, USA.
Gibson MK; Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63108, USA. Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA. Department of Biomedical Engineering, Washington University, St. Louis, MO 63130, USA.
Colwell R; CosmosID, 387 Technology Drive, Suite 3119, College Park, MD 20742, USA. Center for Bioinformatics and Computational Biology, University of Maryland Institute for Advanced Computer Studies, University of Maryland College Park, College Park, MD 20742, USA.
Dantas G; Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63108, USA. Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA. Department of Biomedical Engineering, Washington University, St. Louis, MO 63130, USA.
Knight R; Biofrontiers Institute, University of Colorado, 3415 Colorado Avenue, Boulder, CO 80304, USA. Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, CO 80304, USA. Howard Hughes Medical Institute, Boulder, CO 80309, USA.
Gilbert JA; Department of Ecology and Evolution, University of Chicago, 1101 E 57th Street, Chicago, IL 60637, USA. Institute for Genomic and Systems Biology, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, USA. Graduate Program in Biophysical Sciences, University of Chicago, Chicago, IL 60637, USA. .
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Źródło:
Science (New York, N.Y.) [Science] 2014 Aug 29; Vol. 345 (6200), pp. 1048-52.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Family*
Host-Pathogen Interactions*
Household Articles*
Bacteria/*classification
Microbiota/*physiology
Animals ; Bacteria/genetics ; Bacteria/pathogenicity ; Beds/microbiology ; Floors and Floorcoverings ; Foot/microbiology ; Hand/microbiology ; Humans ; Metagenome ; Microbiota/genetics ; Nose/microbiology ; Pets/microbiology ; Surface Properties
Czasopismo naukowe

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