Docking cholesterol to integral membrane proteins with Rosetta.
Autorzy:
Marlow B; Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, United States of America.; Chemical and Physical Biology Program, Vanderbilt University, Nashville, Tennessee, United States of America. Kuenze G; Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, United States of America.; Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America.; Institute for Drug Discovery, Leipzig University Medical School, Leipzig, Germany. Meiler J; Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, United States of America.; Chemical and Physical Biology Program, Vanderbilt University, Nashville, Tennessee, United States of America.; Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America.; Institute for Drug Discovery, Leipzig University Medical School, Leipzig, Germany. KoehlerLemanJ; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2023 Mar 27; Vol. 19 (3), pp. e1010947. Date of Electronic Publication: 2023 Mar 27 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
Better together: Elements of successful scientific software development in a distributed collaborative community.
Autorzy:
KoehlerLemanJ; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, United States of America.; Dept of Biology, New York University, New York, NY, United States of America. Weitzner BD; Dept of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, United States of America.; Dept of Biochemistry, University of Washington, Seattle, WA, United States of America.; Institute for Protein Design, University of Washington, Seattle, WA, United States of America.; Lyell Immunopharma, Seattle, WA, United States of America. Renfrew PD; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, United States of America. Lewis SM; Dept of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America.; Dept of Biochemistry, Duke University, Durham, NC, United States of America.; Cyrus Biotechnology, Seattle, WA United States of America. Moretti R; Dept of Chemistry, Vanderbilt University, Nashville, TN, United States of America. Watkins AM; Dept of Biochemistry, Stanford University School of Medicine, Stanford CA, United States of America. Mulligan VK; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, United States of America.; Dept of Biochemistry, University of Washington, Seattle, WA, United States of America.; Institute for Protein Design, University of Washington, Seattle, WA, United States of America. Lyskov S; Dept of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, United States of America. Adolf-Bryfogle J; Dept of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, United States of America. Labonte JW; Dept of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, United States of America.; Dept of Chemistry, Franklin & Marshall College, Lancaster, PA, United States of America. Krys J; Dept of Chemistry, University of Warsaw, Warsaw, Poland. Bystroff C; Dept of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY, United States of America. Schief W; Dept of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, United States of America. Gront D; Dept of Chemistry, University of Warsaw, Warsaw, Poland. Schueler-Furman O; Dept of Microbiology and Molecular Genetics, IMRIC, Ein Kerem Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel. Baker D; Dept of Biochemistry, University of Washington, Seattle, WA, United States of America.; Institute for Protein Design, University of Washington, Seattle, WA, United States of America. Bradley P; Fred Hutchinson Cancer Research Center, Seattle, WA, United States of America. Dunbrack R; Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia PA, United States of America. Kortemme T; Dept of Bioengineering and Therapeutic Sciences, University of California San Francisco, CA, United States of America. Leaver-Fay A; Dept of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America. Strauss CEM; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, United States of America. Meiler J; Depts of Chemistry, Pharmacology and Biomedical Informatics, Vanderbilt University, Nashville, TN, United States of America.; Center for Structural Biology, Vanderbilt University, Nashville, TN, United States of America.; Institute for Chemical Biology, Vanderbilt University, Nashville, TN, United States of America.; Institute for Drug Discovery, Leipzig University, Leipzig, Germany. Kuhlman B; Dept of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America. Gray JJ; Dept of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, United States of America. Bonneau R; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, United States of America.; Dept of Biology, New York University, New York, NY, United States of America.; Dept of Computer Science, New York University, New York, NY, United States of America.; Center for Data Science, New York University, New York, NY, United States of America.
PLoS computational biology [PLoS Comput Biol] 2020 May 04; Vol. 16 (5), pp. e1007507. Date of Electronic Publication: 2020 May 04 (Print Publication: 2020).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Review
Improving Loop Modeling of the Antibody Complementarity-Determining Region 3 Using Knowledge-Based Restraints.
Autorzy:
Finn JA; Department of Pathology, Microbiology and Immunology, Vanderbilt University, Nashville, Tennessee, United States of America. KoehlerLemanJ; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States of America. Willis JR; Chemical and Physical Biology Program, Vanderbilt University, Nashville, Tennessee, United States of America. Cisneros A 3rd; Chemical and Physical Biology Program, Vanderbilt University, Nashville, Tennessee, United States of America. Crowe JE Jr; Department of Pathology, Microbiology and Immunology, Vanderbilt University, Nashville, Tennessee, United States of America.; Department of Pediatrics, Vanderbilt University, Nashville, Tennessee, United States of America.; Chemical and Physical Biology Program, Vanderbilt University, Nashville, Tennessee, United States of America.; Vanderbilt Vaccine Center, Vanderbilt University, Nashville, Tennessee, United States of America. Meiler J; Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America.; Department of Pharmacology, Vanderbilt University, Nashville, Tennessee, United States of America.; Chemical and Physical Biology Program, Vanderbilt University, Nashville, Tennessee, United States of America.
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Źródło:
PloS one [PLoS One] 2016 May 16; Vol. 11 (5), pp. e0154811. Date of Electronic Publication: 2016 May 16 (Print Publication: 2016).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
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