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Tytuł :
simplePHENOTYPES: SIMulation of pleiotropic, linked and epistatic phenotypes.
Autorzy :
Fernandes SB; Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, 61801, USA.
Lipka AE; Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, 61801, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2020 Oct 31; Vol. 21 (1), pp. 491. Date of Electronic Publication: 2020 Oct 31.
Typ publikacji :
Journal Article
MeSH Terms :
Computer Simulation*
Epistasis, Genetic*
Genetic Linkage*
Genetic Pleiotropy*
Software*
Gene Frequency/genetics ; Genome-Wide Association Study ; Genotype ; Humans ; Linkage Disequilibrium/genetics ; Multivariate Analysis ; Phenotype ; Quantitative Trait, Heritable ; Workflow
Czasopismo naukowe
Tytuł :
Identification of QTLs for resistance to leaf spots in cultivated peanut (Arachis hypogaea L.) through GWAS analysis.
Autorzy :
Zhang H; Department of Crop, Soil, and Environmental Sciences, Auburn University, Auburn, AL, 36849, USA.
Chu Y; Center for Applied Genetic Technologies, University of Georgia, Tifton, GA, 31793, USA.
Dang P; USDA-ARS National Peanut Research Laboratory, Dawson, GA, 39842, USA.
Tang Y; Department of Crop, Soil, and Environmental Sciences, Auburn University, Auburn, AL, 36849, USA.; Shandong Peanut Research Institute, Qingdao, 266100, China.
Jiang T; Department of Crop, Soil, and Environmental Sciences, Auburn University, Auburn, AL, 36849, USA.
Clevenger JP; Center for Applied Genetic Technologies, University of Georgia, Tifton, GA, 31793, USA.
Ozias-Akins P; Center for Applied Genetic Technologies, University of Georgia, Tifton, GA, 31793, USA.
Holbrook C; USDA-ARS Crop Genetics and Breeding Research, Tifton, GA, 31793, USA.
Wang ML; USDA-ARS Plant Genetic Resources Conservation, Griffin, GA, 30223, USA.
Campbell H; Department of Entomology and Plant Pathology, Auburn University, Auburn, AL, 36849, USA.
Hagan A; Department of Entomology and Plant Pathology, Auburn University, Auburn, AL, 36849, USA.
Chen C; Department of Crop, Soil, and Environmental Sciences, Auburn University, Auburn, AL, 36849, USA. .
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Źródło :
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [Theor Appl Genet] 2020 Jul; Vol. 133 (7), pp. 2051-2061. Date of Electronic Publication: 2020 Mar 06.
Typ publikacji :
Journal Article
MeSH Terms :
Genes, Plant*
Genetic Linkage*
Quantitative Trait Loci*
Arachis/*genetics
Disease Resistance/*genetics
Chromosome Mapping ; Chromosomes, Plant/genetics ; Genetic Association Studies ; Genotype ; Linkage Disequilibrium ; Phenotype ; Plant Leaves
Czasopismo naukowe
Tytuł :
Genome-wide association mapping reveals loci for shelf life and developmental rate of lettuce.
Autorzy :
Sthapit Kandel J; Crop Improvement and Protection Research Unit, U.S. Department of Agriculture, Agricultural Research Service, 1636 E. Alisal Street, Salinas, CA, 93905, USA. .
Peng H; The Genome Center and Department of Plant Sciences, University of California, Davis, CA, 95616, USA.
Hayes RJ; Forage Seed and Cereal Research Unit, U.S. Department of Agriculture, Agricultural Research Service, 3450 SW Campus Way, Corvallis, OR, 97331, USA.
Mou B; Crop Improvement and Protection Research Unit, U.S. Department of Agriculture, Agricultural Research Service, 1636 E. Alisal Street, Salinas, CA, 93905, USA.
Simko I; Crop Improvement and Protection Research Unit, U.S. Department of Agriculture, Agricultural Research Service, 1636 E. Alisal Street, Salinas, CA, 93905, USA. .
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Źródło :
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [Theor Appl Genet] 2020 Jun; Vol. 133 (6), pp. 1947-1966. Date of Electronic Publication: 2020 Mar 02.
Typ publikacji :
Journal Article
MeSH Terms :
Genetic Linkage*
Polymorphism, Single Nucleotide*
Quantitative Trait Loci*
Lettuce/*genetics
Chromosome Mapping ; Crosses, Genetic ; Food Storage ; Genetic Association Studies ; Genotype ; Lettuce/physiology ; Linkage Disequilibrium ; Phenotype ; Phylogeny ; Principal Component Analysis ; Quantitative Trait, Heritable
Czasopismo naukowe
Tytuł :
In-depth genome diversity, population structure and linkage disequilibrium analysis of worldwide diverse safflower (Carthamus tinctorius L.) accessions using NGS data generated by DArTseq technology.
Autorzy :
Hassani SMR; Department of Agronomy and Plant Breeding, Sanandaj Branch, Islamic Azad University, Sanandaj, Iran.
Talebi R; Department of Agronomy and Plant Breeding, Sanandaj Branch, Islamic Azad University, Sanandaj, Iran. .
Pourdad SS; Dryland Agricultural Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Kermanshah, 1164-67145, Iran.
Naji AM; Department of Agronomy and Plant Breeding, Faculty of Agriculture, Shahed University, Tehran, Iran.
Fayaz F; Department of Agronomy and Plant Breeding, Sanandaj Branch, Islamic Azad University, Sanandaj, Iran.
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Źródło :
Molecular biology reports [Mol Biol Rep] 2020 Mar; Vol. 47 (3), pp. 2123-2135. Date of Electronic Publication: 2020 Feb 15.
Typ publikacji :
Journal Article
MeSH Terms :
Genetic Variation*
Genetics, Population*
Genome, Plant*
Genomics*/methods
Linkage Disequilibrium*
Carthamus tinctorius/*genetics
Computational Biology/methods ; Genetic Linkage ; Genome-Wide Association Study ; Genotype ; High-Throughput Nucleotide Sequencing ; Phenotype ; Phylogeny ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Tytuł :
Linkage, recombination, and mutation rate analyses of 19 X-chromosomal STR loci in Chinese Southern Han pedigrees.
Autorzy :
Yang X; Guangzhou Forensic Science Institute, 1708 Baiyun Avenue, Guangzhou, 510030, China.
Chen Y; Forensic Science Center of Yuexiu District Branch of Guangzhou Public, Security Bureau in Guangdong Province, Guangzhou, 510080, China.
Zeng X; Center for Human Identification, University of North Texas Health Science Center, Ft Worth, TX, USA.
Chen L; School of Forensic Medicine, Southern Medical University, Guangzhou, 510515, China.
Liu C; Guangzhou Forensic Science Institute, 1708 Baiyun Avenue, Guangzhou, 510030, China.
Liu H; Guangzhou Forensic Science Institute, 1708 Baiyun Avenue, Guangzhou, 510030, China.
Xu Q; Guangzhou Forensic Science Institute, 1708 Baiyun Avenue, Guangzhou, 510030, China.
Budowle B; Center for Human Identification, University of North Texas Health Science Center, Ft Worth, TX, USA. .
Liu C; Guangzhou Forensic Science Institute, 1708 Baiyun Avenue, Guangzhou, 510030, China. .; School of Forensic Medicine, Southern Medical University, Guangzhou, 510515, China. .
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Źródło :
International journal of legal medicine [Int J Legal Med] 2019 Nov; Vol. 133 (6), pp. 1691-1698. Date of Electronic Publication: 2019 Jul 17.
Typ publikacji :
Journal Article
MeSH Terms :
Chromosomes, Human, X*
Genetic Linkage*
Microsatellite Repeats*
Mutation Rate*
Recombination, Genetic*
Ethnic Groups/*genetics
Asian Continental Ancestry Group/genetics ; China ; Female ; Haplotypes ; Humans ; Likelihood Functions ; Linkage Disequilibrium ; Male ; Pedigree
Czasopismo naukowe
Tytuł :
Linked electronic health records for research on a nationwide cohort of more than 54 million people in England: data resource.
Autorzy :
Wood A; British Heart Foundation Cardiovascular Epidemiology Unit, Department of Public Health and Primary Care, University of Cambridge, Cambridge, UK.; British Heart Foundation Centre of Research Excellence, University of Cambridge, Cambridge, UK.; Health Data Research UK Cambridge, Wellcome Genome Campus and University of Cambridge, Cambridge, UK.; National Institute for Health Research Blood and Transplant Research Unit in Donor Health and Genomics, University of Cambridge, Cambridge, UK.; The Alan Turing Institute, London, UK.
Denholm R; Population Health Sciences, Bristol Medical School, University of Bristol, Bristol, UK.; Health Data Research UK, South West Better Care Partnership, Bristol, UK.; National Institute for Health Research Bristol Biomedical Research Centre, University of Bristol, Bristol, UK.
Hollings S; NHS Digital, Leeds, UK.
Cooper J; Population Health Sciences, Bristol Medical School, University of Bristol, Bristol, UK.; Health Data Research UK, South West Better Care Partnership, Bristol, UK.; National Institute for Health Research Bristol Biomedical Research Centre, University of Bristol, Bristol, UK.
Ip S; British Heart Foundation Cardiovascular Epidemiology Unit, Department of Public Health and Primary Care, University of Cambridge, Cambridge, UK.
Walker V; Population Health Sciences, Bristol Medical School, University of Bristol, Bristol, UK.; University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.; MRC University of Bristol Integrative Epidemiology Unit, Bristol, UK.
Denaxas S; The Alan Turing Institute, London, UK.; British Heart Foundation Research Accelerator, University College London, London, UK.; Institute of Health Informatics, University College London, London, UK.; National Institute for Health Research University College London Hospitals Biomedical Research Centre, University College London, London, UK.
Akbari A; Population Data Science and Health Data Research UK, Swansea University, Swansea, UK.
Banerjee A; Barts Health NHS Trust, The Royal London Hospital, London, UK.; Institute of Health Informatics, University College London, London, UK.; University College London Hospitals NHS Trust, London, UK.
Whiteley W; Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh, UK.; Nuffield Department of Population Health, University of Oxford, Oxford, UK.
Lai A; Institute of Health Informatics, University College London, London, UK.
Sterne J; Population Health Sciences, Bristol Medical School, University of Bristol, Bristol, UK.; Health Data Research UK, South West Better Care Partnership, Bristol, UK.; National Institute for Health Research Bristol Biomedical Research Centre, University of Bristol, Bristol, UK.
Sudlow C; Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh, UK .; BHF Data Science Centre, Health Data Research UK, London, UK.; Usher Institute, Edinburgh Medical School, University of Edinburgh, Edinburgh, UK.
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Corporate Authors :
CVD-COVID-UK consortium
Źródło :
BMJ (Clinical research ed.) [BMJ] 2021 Apr 07; Vol. 373, pp. n826. Date of Electronic Publication: 2021 Apr 07.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Electronic Health Records*
Medical Record Linkage*
COVID-19/*epidemiology
Cardiovascular Diseases/*epidemiology
Adolescent ; Adult ; Aged ; COVID-19/diagnosis ; COVID-19 Testing ; COVID-19 Vaccines ; Cardiovascular Diseases/diagnosis ; Child ; Child, Preschool ; Cohort Studies ; England/epidemiology ; Female ; Hospitalization/statistics & numerical data ; Humans ; Infant ; Infant, Newborn ; Male ; Middle Aged ; Primary Health Care/statistics & numerical data ; Young Adult
Czasopismo naukowe
Tytuł :
A Combined Linkage and GWAS Analysis Identifies QTLs Linked to Soybean Seed Protein and Oil Content.
Autorzy :
Zhang T; Ministry of Agriculture and Rural Affairs Key Laboratory of Soybean Biology, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Wu T; Ministry of Agriculture and Rural Affairs Key Laboratory of Soybean Biology, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Wang L; Ministry of Agriculture and Rural Affairs Key Laboratory of Soybean Biology, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Jiang B; Ministry of Agriculture and Rural Affairs Key Laboratory of Soybean Biology, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Zhen C; Ministry of Agriculture and Rural Affairs Key Laboratory of Soybean Biology, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Yuan S; Ministry of Agriculture and Rural Affairs Key Laboratory of Soybean Biology, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Hou W; Ministry of Agriculture and Rural Affairs Key Laboratory of Soybean Biology, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.; National Center for Transgenic Research in Plants, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Wu C; Ministry of Agriculture and Rural Affairs Key Laboratory of Soybean Biology, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Han T; Ministry of Agriculture and Rural Affairs Key Laboratory of Soybean Biology, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Sun S; Ministry of Agriculture and Rural Affairs Key Laboratory of Soybean Biology, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2019 Nov 25; Vol. 20 (23). Date of Electronic Publication: 2019 Nov 25.
Typ publikacji :
Journal Article
MeSH Terms :
Genetic Linkage*
Genome-Wide Association Study*
Quantitative Trait Loci*
Plant Oils/*metabolism
Seeds/*genetics
Soybean Proteins/*genetics
Soybeans/*genetics
Chromosome Mapping ; Chromosomes, Plant ; Genome, Plant ; Linkage Disequilibrium ; Phenotype ; Polymorphism, Single Nucleotide ; Seeds/metabolism ; Soybean Proteins/metabolism ; Soybeans/metabolism
Czasopismo naukowe
Tytuł :
Genetic linkage analysis of a large family identifies FIGN as a candidate modulator of reduced penetrance in heritable pulmonary arterial hypertension.
Autorzy :
Puigdevall P; Department of Experimental and Health Sciences, Universitat Pompeu Fabra, Barcelona, Spain.
Piccari L; Hospital Clínic de Barcelona, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
Blanco I; Hospital Clínic de Barcelona, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Respiratorias (CIBERES), Madrid, Spain.
Barberà JA; Hospital Clínic de Barcelona, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Respiratorias (CIBERES), Madrid, Spain.
Geiger D; Faculty of Computer Science, Technion Israel Institute of Technology, Haifa, Israel.
Badenas C; Hospital Clínic de Barcelona, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), Instituto de Salud Carlos III, Madrid, Spain.
Milà M; Hospital Clínic de Barcelona, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), Instituto de Salud Carlos III, Madrid, Spain.
Castelo R; Department of Experimental and Health Sciences, Universitat Pompeu Fabra, Barcelona, Spain.; Institut Hospital del Mar d'Investigacions Mèdiques (IMIM), Barcelona, Spain.
Madrigal I; Hospital Clínic de Barcelona, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), Instituto de Salud Carlos III, Madrid, Spain.
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Źródło :
Journal of medical genetics [J Med Genet] 2019 Jul; Vol. 56 (7), pp. 481-490. Date of Electronic Publication: 2019 Mar 20.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genetic Linkage*
Genetic Predisposition to Disease*
Penetrance*
ATPases Associated with Diverse Cellular Activities/*genetics
Familial Primary Pulmonary Hypertension/*diagnosis
Familial Primary Pulmonary Hypertension/*genetics
Microtubule-Associated Proteins/*genetics
Alleles ; Amino Acid Substitution ; Blood Pressure ; Chromosomes, Human, Pair 2 ; Family ; Genetic Association Studies ; Genome-Wide Association Study ; Genotype ; Hemodynamics ; Heterozygote ; Humans ; Linkage Disequilibrium ; Mutation ; Pedigree ; Phenotype ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Tytuł :
Genetic dissection of rhizome yield-related traits in Nelumbo nucifera through genetic linkage map construction and QTL mapping.
Autorzy :
Huang L; Institute of Cotton Research, Chinese Academy of Agriculture Science, China; Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.
Li M; State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, 430062, China.
Cao D; Institute of Oceanography, Minjiang University, Fuzhou, 350108, China; Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.
Yang P; State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, 430062, China; Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China. Electronic address: .
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Źródło :
Plant physiology and biochemistry : PPB [Plant Physiol Biochem] 2021 Mar; Vol. 160, pp. 155-165. Date of Electronic Publication: 2021 Jan 21.
Typ publikacji :
Journal Article
MeSH Terms :
Genetic Linkage*
Quantitative Trait Loci*
Nelumbo/*genetics
Rhizome/*growth & development
Chromosome Mapping ; Plant Breeding ; Polymorphism, Single Nucleotide ; Rhizome/genetics
Czasopismo naukowe
Tytuł :
Linkage of Australian national registry data using a statistical linkage key.
Autorzy :
Coulson TG; Department of Epidemiology and Preventive Medicine, Monash University, Melbourne, Australia. .; Centre for Integrated Critical Care, University of Melbourne, Melbourne, Australia. .; Department of Anaesthesiology and Perioperative Medicine, Alfred Health, Melbourne, Australia. .
Bailey M; Department of Epidemiology and Preventive Medicine, Monash University, Melbourne, Australia.; Department of Medicine and Radiology, University of Melbourne, Melbourne, Australia.
Reid C; Department of Epidemiology and Preventive Medicine, Monash University, Melbourne, Australia.; School of Public Health, Curtin University, Perth, Australia.
Shardey G; Department of Epidemiology and Preventive Medicine, Monash University, Melbourne, Australia.
Williams-Spence J; Department of Epidemiology and Preventive Medicine, Monash University, Melbourne, Australia.
Huckson S; The Australian and New Zealand Intensive Care Society (ANZICS) Centre for Outcome and Resource Evaluation (CORE), 277 Camberwell Road, Camberwell, VIC, 3124, Australia.
Chavan S; The Australian and New Zealand Intensive Care Society (ANZICS) Centre for Outcome and Resource Evaluation (CORE), 277 Camberwell Road, Camberwell, VIC, 3124, Australia.
Pilcher D; Department of Epidemiology and Preventive Medicine, Monash University, Melbourne, Australia.; The Australian and New Zealand Intensive Care Society (ANZICS) Centre for Outcome and Resource Evaluation (CORE), 277 Camberwell Road, Camberwell, VIC, 3124, Australia.; The Department of Intensive Care, Alfred Health, Commercial Road, Prahran, VIC, 3004, Australia.
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Źródło :
BMC medical informatics and decision making [BMC Med Inform Decis Mak] 2021 Feb 02; Vol. 21 (1), pp. 37. Date of Electronic Publication: 2021 Feb 02.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Hospitalization*
Medical Record Linkage*
Australia/epidemiology ; Databases, Factual ; Humans ; Registries
Czasopismo naukowe
Tytuł :
Population-specific causal disease effect sizes in functionally important regions impacted by selection.
Autorzy :
Shi H; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA. .; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA. .
Gazal S; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Kanai M; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.; Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.; Department of Statistical Genetics, Osaka University Graduate School of Medicine, Suita, Japan.
Koch EM; Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.; Department of Medicine, Harvard Medical School, Boston, MA, USA.
Schoech AP; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.
Siewert KM; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Kim SS; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA.
Luo Y; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.; Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.; Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.; Center for Data Sciences, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Amariuta T; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.; Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.; Center for Data Sciences, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.; Graduate School of Arts and Sciences, Harvard University, Cambridge, MA, USA.
Huang H; Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.; Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.; Department of Medicine, Harvard Medical School, Boston, MA, USA.
Okada Y; Department of Statistical Genetics, Osaka University Graduate School of Medicine, Suita, Japan.; Laboratory of Statistical Immunology, Immunology Frontier Research Center (WPI-IFReC), Osaka University, Suita, Japan.
Raychaudhuri S; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.; Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.; Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.; Center for Data Sciences, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.; Arthritis Research UK Centre for Genetics and Genomics, Centre for Musculoskeletal Research, Manchester Academic Health Science Centre, The University of Manchester, Manchester, UK.
Sunyaev SR; Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.; Department of Medicine, Harvard Medical School, Boston, MA, USA.
Price AL; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA. .; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA. .; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA. .
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Źródło :
Nature communications [Nat Commun] 2021 Feb 17; Vol. 12 (1), pp. 1098. Date of Electronic Publication: 2021 Feb 17.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Linkage Disequilibrium*
Polymorphism, Single Nucleotide*
Selection, Genetic*
Genetics, Population/*methods
Genome-Wide Association Study/*methods
Algorithms ; Asian Continental Ancestry Group/genetics ; European Continental Ancestry Group/genetics ; Genomics/methods ; Haplotypes/genetics ; Humans ; Models, Genetic
Czasopismo naukowe
Tytuł :
[Assessment of participation and its associated lifestyle factors in the 2016 National Survey of Dental Diseases: an analysis through record linkage with National Health and Nutrition Survey].
Autorzy :
Ando Y; Department of Health Promotion, National Institute of Public Health.
Ikeda N; International Center of Nutrition and Information, National Institute of Health and Nutrition, National Institute of Biomedical Innovation, Health and Nutrition.
Nishi N; International Center of Nutrition and Information, National Institute of Health and Nutrition, National Institute of Biomedical Innovation, Health and Nutrition.
Tano R; Department of Health Promotion, National Institute of Public Health.
Iwasaki M; Tokyo Metropolitan institute of Gerontology.
Miura H; School of Dentistry, Health Sciences University of Hokkaido.
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Źródło :
[Nihon koshu eisei zasshi] Japanese journal of public health [Nihon Koshu Eisei Zasshi] 2021 Jan 30; Vol. 68 (1), pp. 33-41. Date of Electronic Publication: 2020 Dec 19.
Typ publikacji :
Journal Article
MeSH Terms :
Life Style*
Medical Record Linkage*
Health Surveys/*methods
Nutrition Surveys/*methods
Patient Participation/*statistics & numerical data
Stomatognathic Diseases/*epidemiology
Adult ; Age Factors ; Female ; Humans ; Japan/epidemiology ; Male ; Middle Aged ; Sex Factors ; Stomatognathic Diseases/diagnosis ; Stomatognathic Diseases/etiology ; Stomatognathic Diseases/prevention & control ; Time Factors ; Young Adult
Czasopismo naukowe
Tytuł :
Mapping quantitative trait loci and predicting candidate genes for leaf angle in maize.
Autorzy :
Zhang N; State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China.
Huang X; State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China.
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Źródło :
PloS one [PLoS One] 2021 Jan 06; Vol. 16 (1), pp. e0245129. Date of Electronic Publication: 2021 Jan 06 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genetic Linkage*
Quantitative Trait Loci*
Chromosomes, Plant/*genetics
Plant Leaves/*genetics
Zea mays/*growth & development
Chromosome Mapping
Czasopismo naukowe
Tytuł :
Genome-wide association mapping for protein, oil and water-soluble protein contents in soybean.
Autorzy :
Zhang S; National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China.
Hao D; Jiangsu Yanjiang Institute of Agricultural Sciences, Nantong, 226000, China.
Zhang S; National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China.
Zhang D; Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450000, China.
Wang H; National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China.
Du H; School of Life Sciences, Guangzhou University, Guangzhou, 510006, China.
Kan G; National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China. .
Yu D; National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China. .
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Źródło :
Molecular genetics and genomics : MGG [Mol Genet Genomics] 2021 Jan; Vol. 296 (1), pp. 91-102. Date of Electronic Publication: 2020 Oct 02.
Typ publikacji :
Journal Article
MeSH Terms :
Genetic Linkage*
Genome, Plant*
Quantitative Trait Loci*
Chromosome Mapping/*methods
Seeds/*genetics
Soybeans/*genetics
Alleles ; Genome-Wide Association Study ; Genotype ; Phenotype ; Plant Breeding ; Plant Oils/metabolism ; Plant Proteins/biosynthesis ; Plant Proteins/genetics ; Polymorphism, Single Nucleotide ; Seeds/chemistry ; Solubility ; Soybeans/metabolism
Czasopismo naukowe
Tytuł :
Genetic tracing of HCoV-19 for the re-emerging outbreak of COVID-19 in Beijing, China.
Autorzy :
Yang J; CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID), Chinese Academy of Sciences, Beijing, 100101, China.
Niu P; National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, 102206, China.
Chen L; Beijing Center for Diseases Prevention and Control, Beijing, 100013, China.
Wang L; CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID), Chinese Academy of Sciences, Beijing, 100101, China.
Zhao L; National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, 102206, China.
Huang B; National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, 102206, China.
Ma J; CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID), Chinese Academy of Sciences, Beijing, 100101, China.
Hu S; CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID), Chinese Academy of Sciences, Beijing, 100101, China.
Wu L; CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID), Chinese Academy of Sciences, Beijing, 100101, China.
Wu G; National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, 102206, China.; Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan, 430071, China.
Huang C; Beijing Center for Diseases Prevention and Control, Beijing, 100013, China. .
Bi Y; CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID), Chinese Academy of Sciences, Beijing, 100101, China. .; University of Chinese Academy of Sciences, Beijing, 101408, China. .
Tan W; National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, 102206, China. .; Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan, 430071, China. .
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Źródło :
Protein & cell [Protein Cell] 2021 Jan; Vol. 12 (1), pp. 4-6.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genetic Linkage*
COVID-19/*pathology
SARS-CoV-2/*genetics
COVID-19/epidemiology ; COVID-19/virology ; China/epidemiology ; Disease Outbreaks ; Humans ; Phylogeny ; Polymorphism, Single Nucleotide ; SARS-CoV-2/classification ; SARS-CoV-2/isolation & purification
Czasopismo naukowe
Tytuł :
A reference high-density genetic map of greater yam (Dioscorea alata L.).
Autorzy :
Cormier F; CIRAD, UMR AGAP, 97170, Petit-Bourg, Guadeloupe, France. .; Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France. .
Lawac F; CIRAD, UMR AGAP, 97170, Petit-Bourg, Guadeloupe, France.; Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France.; VARTC, P.O. Box 231, Luganville, Santo, Vanuatu.
Maledon E; CIRAD, UMR AGAP, 97170, Petit-Bourg, Guadeloupe, France.; Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France.
Gravillon MC; CIRAD, UMR AGAP, 97170, Petit-Bourg, Guadeloupe, France.; Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France.
Nudol E; CIRAD, UMR AGAP, 97170, Petit-Bourg, Guadeloupe, France.; Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France.
Mournet P; CIRAD, UMR AGAP, 97170, Petit-Bourg, Guadeloupe, France.; CIRAD, UMR AGAP, 34398, Montpellier, France.
Vignes H; CIRAD, UMR AGAP, 97170, Petit-Bourg, Guadeloupe, France.; CIRAD, UMR AGAP, 34398, Montpellier, France.
Chaïr H; CIRAD, UMR AGAP, 97170, Petit-Bourg, Guadeloupe, France.; CIRAD, UMR AGAP, 34398, Montpellier, France.
Arnau G; CIRAD, UMR AGAP, 97170, Petit-Bourg, Guadeloupe, France.; Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France.
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Źródło :
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [Theor Appl Genet] 2019 Jun; Vol. 132 (6), pp. 1733-1744. Date of Electronic Publication: 2019 Feb 20.
Typ publikacji :
Journal Article
MeSH Terms :
Genetic Linkage*
Genome, Plant*
Polymorphism, Single Nucleotide*
Quantitative Trait Loci*
Chromosomes, Plant/*genetics
Dioscorea/*genetics
Genomics/*methods
Chromosome Mapping ; Linkage Disequilibrium ; Phenotype ; Plant Breeding ; Reference Standards
Czasopismo naukowe
Tytuł :
Epistasis detectably alters correlations between genomic sites in a narrow parameter window.
Autorzy :
Pedruzzi G; Sorbonne Université, Institute de Biologie Paris-Seine, Laboratoire de Biologie Computationelle et Quantitative, LCQB, Paris, France.
Rouzine IM; Sorbonne Université, Institute de Biologie Paris-Seine, Laboratoire de Biologie Computationelle et Quantitative, LCQB, Paris, France.
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Źródło :
PloS one [PLoS One] 2019 May 31; Vol. 14 (5), pp. e0214036. Date of Electronic Publication: 2019 May 31 (Print Publication: 2019).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Epistasis, Genetic*
Genetic Linkage*
Models, Genetic*
Computer Simulation ; Evolution, Molecular ; Genetics, Population ; Haplotypes ; Linkage Disequilibrium ; Monte Carlo Method ; Recombination, Genetic
Czasopismo naukowe
Tytuł :
German population data for 18 X-STRs: a hexaplex PCR adding two clusters of X-STRs to the Argus X-12 set and expanding the German haplotype databases.
Autorzy :
Hering S; Institute of Legal Medicine, University of Dresden, Dresden, Germany.
Klimova A; Institute for Medical Informatics and Biometry, University of Dresden, Dresden, Germany.
Edelmann J; Institute of Legal Medicine, University of Leipzig, Leipzig, Germany. .
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Źródło :
International journal of legal medicine [Int J Legal Med] 2020 Nov; Vol. 134 (6), pp. 2061-2062. Date of Electronic Publication: 2020 May 04.
Typ publikacji :
Journal Article
MeSH Terms :
Chromosomes, Human, X*
Genetic Linkage*
Haplotypes*
Linkage Disequilibrium*
Microsatellite Repeats*
Polymerase Chain Reaction/*methods
Databases, Genetic ; Genetics, Population ; Germany ; Humans ; Male
Czasopismo naukowe
Tytuł :
sim1000G: a user-friendly genetic variant simulator in R for unrelated individuals and family-based designs.
Autorzy :
Dimitromanolakis A; Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, 60, Murray Street, Toronto, ON, M5T 3L9, Canada.; Department of Statistical Sciences, University of Toronto, Toronto, M5S 3G3, Canada.
Xu J; Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, 60, Murray Street, Toronto, ON, M5T 3L9, Canada.; Dalla Lana School of Public Health, University of Toronto, Toronto, M5T 3L9, Canada.
Krol A; Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, 60, Murray Street, Toronto, ON, M5T 3L9, Canada.
Briollais L; Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, 60, Murray Street, Toronto, ON, M5T 3L9, Canada. .; Dalla Lana School of Public Health, University of Toronto, Toronto, M5T 3L9, Canada. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2019 Jan 15; Vol. 20 (1), pp. 26. Date of Electronic Publication: 2019 Jan 15.
Typ publikacji :
Journal Article
MeSH Terms :
Genetic Linkage*
Genetic Markers*
Genetics, Population*
Models, Genetic*
Polymorphism, Single Nucleotide*
Software*
Computational Biology/*methods
Female ; Humans ; Linkage Disequilibrium ; Male ; Pedigree
Czasopismo naukowe
Tytuł :
LDscaff: LD-based scaffolding of de novo genome assemblies.
Autorzy :
Zhao Z; BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, 518083, China.; Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong SAR, 999077, China.
Zhou Y; BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, 518083, China.; BGI-Shenzhen, Shenzhen, 518083, China.
Wang S; Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong SAR, 999077, China.
Zhang X; BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, 518083, China.
Wang C; Liaocheng Research Institute of Donkey High-Efficiency Breeding and Ecological Feeding, Liaocheng University, Liaocheng City, 252059, Shandong, China. .
Li S; Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong SAR, 999077, China. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2020 Dec 28; Vol. 21 (Suppl 21), pp. 570. Date of Electronic Publication: 2020 Dec 28.
Typ publikacji :
Journal Article
MeSH Terms :
Linkage Disequilibrium*
Whole Genome Sequencing/*methods
Alleles ; Animals ; High-Throughput Nucleotide Sequencing ; Swine
Czasopismo naukowe

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