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Wyszukujesz frazę ""Metagenomics"" wg kryterium: Temat


Tytuł :
Assessment of fungal diversity in soil rhizosphere associated with Rhazya stricta and some desert plants using metagenomics.
Autorzy :
Noor SO; Department of Biological Sciences, Faculty of Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.
Al-Zahrani DA; Department of Biological Sciences, Faculty of Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.
Hussein RM; University of Jeddah, College of Sciences and Arts, Department of Biological Sciences, Al Kamel Province, Jeddah, Saudi Arabia.; Genetics and Cytology Dept. Genetic Engineering Division, National Resesrch Centre, Dokki, Cairo, Egypt.
Baeshen MN; University of Jeddah, College of Science, Department of Biological Sciences, Jeddah, Saudi Arabia.
Moussa TAA; Botany and Microbiology Department, Faculty of Science, Cairo University, Giza, 12613, Egypt. .
Abo-Aba SM; Department of Biological Sciences, Faculty of Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.; Department of Microbial Genetics, Genetic Engineering and Biotechnology Division, National Research Centre, Dokki, Giza, Egypt.
Al-Hejin AM; Department of Biological Sciences, Faculty of Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.
Baeshen NA; Department of Biological Sciences, Faculty of Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.
Huelsenbeck JP; Department of Integrative Biology, University of California, Berkeley, USA.
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Źródło :
Archives of microbiology [Arch Microbiol] 2021 Apr; Vol. 203 (3), pp. 1211-1219. Date of Electronic Publication: 2020 Nov 24.
Typ publikacji :
Journal Article
MeSH Terms :
Biodiversity*
Metagenomics*
Rhizosphere*
Soil Microbiology*
Fungi/*genetics
Mycobiome/*genetics
Plants/*microbiology
Desert Climate ; Fungi/classification ; Phylogeny ; Plant Roots/microbiology
Czasopismo naukowe
Tytuł :
Potential role of viral metagenomics as a surveillance tool for the early detection of emerging novel pathogens.
Autorzy :
Mohsin H; Department of Allied Health Sciences, Superior University, Lahore, Pakistan.
Asif A; Schoool of Biological Sciences, University of the Punjab, Lahore, Pakistan.
Fatima M; Learning Resource Center, University of Management and Technology, Lahore, Pakistan.
Rehman Y; Department of Life Sciences, School of Science, University of Management and Technology, Lahore, Pakistan. .
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Źródło :
Archives of microbiology [Arch Microbiol] 2021 Apr; Vol. 203 (3), pp. 865-872. Date of Electronic Publication: 2020 Nov 11.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Epidemiological Monitoring*
Metagenomics*
Communicable Diseases, Emerging/*epidemiology
Disease Outbreaks/*prevention & control
Virus Diseases/*epidemiology
Animals ; COVID-19 ; Communicable Diseases, Emerging/diagnosis ; Coronavirus Infections ; Humans ; Influenza, Human ; Middle East Respiratory Syndrome Coronavirus ; SARS-CoV-2 ; Virus Diseases/diagnosis ; Viruses
Czasopismo naukowe
Tytuł :
BugSeq: a highly accurate cloud platform for long-read metagenomic analyses.
Autorzy :
Fan J; BugSeq Bioinformatics Inc, Vancouver, BC, Canada.
Huang S; BugSeq Bioinformatics Inc, Vancouver, BC, Canada.
Chorlton SD; BugSeq Bioinformatics Inc, Vancouver, BC, Canada. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Mar 25; Vol. 22 (1), pp. 160. Date of Electronic Publication: 2021 Mar 25.
Typ publikacji :
Journal Article
MeSH Terms :
Cloud Computing*
Metagenomics*
Nanopore Sequencing*
High-Throughput Nucleotide Sequencing ; Humans ; Metagenome
Czasopismo naukowe
Tytuł :
ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data.
Autorzy :
Deng Z; Vitalant Research Institute, San Francisco, CA, 94118, USA. .; Department of Laboratory Medicine, University of California at San Francisco, San Francisco, CA, 94107, USA. .
Delwart E; Vitalant Research Institute, San Francisco, CA, 94118, USA. .; Department of Laboratory Medicine, University of California at San Francisco, San Francisco, CA, 94107, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Mar 12; Vol. 22 (1), pp. 119. Date of Electronic Publication: 2021 Mar 12.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Metagenome*
Metagenomics*
Software*
Algorithms ; Animals ; High-Throughput Nucleotide Sequencing ; Humans ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
AgroSeek: a system for computational analysis of environmental metagenomic data and associated metadata.
Autorzy :
Liang X; Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA. .
Akers K; Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA.
Keenum I; Department of Civil and Environmental Engineering, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA.
Wind L; Department of Biological Systems Engineering, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA.
Gupta S; Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA.
Chen C; School of Resource and Environmental Science, Wuhan University, 430072, Wuhan, China.
Aldaihani R; Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA.
Pruden A; Department of Civil and Environmental Engineering, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA.
Zhang L; Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA.
Knowlton KF; Department of Dairy Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA.
Xia K; School of Plant and Environmental Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA.
Heath LS; Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Mar 10; Vol. 22 (1), pp. 117. Date of Electronic Publication: 2021 Mar 10.
Typ publikacji :
Journal Article
MeSH Terms :
Environmental Microbiology*
Genes, Bacterial*
Metadata*
Metagenomics*
Drug Resistance, Microbial/*genetics
Ecosystem ; Internet ; Metagenome ; Software
Czasopismo naukowe
Tytuł :
geneRFinder: gene finding in distinct metagenomic data complexities.
Autorzy :
Silva R; Vale Institute of Technology, Boaventura da Silva, 955, Belém, BR, 66055-090, Brazil.; PPGCC, Federal University of Pará, Augusto Corrêa, 01, Belém, BR, 66075-110, Brazil.
Padovani K; PPGCC, Federal University of Pará, Augusto Corrêa, 01, Belém, BR, 66075-110, Brazil.
Góes F; ICMC, University of São Paulo, Trab. São Carlense, 400, São Carlos, BR, 13566-590, Brazil.
Alves R; Vale Institute of Technology, Boaventura da Silva, 955, Belém, BR, 66055-090, Brazil. .; PPGCC, Federal University of Pará, Augusto Corrêa, 01, Belém, BR, 66075-110, Brazil. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Feb 25; Vol. 22 (1), pp. 87. Date of Electronic Publication: 2021 Feb 25.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Metagenome*
Metagenomics*
Algorithms ; Benchmarking ; Molecular Sequence Annotation
Czasopismo naukowe
Tytuł :
PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data.
Autorzy :
de Nies L; Systems Ecology Research Group, Luxembourg Centre for Systems Biomedicine, Esch-sur-Alzette, Luxembourg.
Lopes S; Systems Ecology Research Group, Luxembourg Centre for Systems Biomedicine, Esch-sur-Alzette, Luxembourg.
Busi SB; Systems Ecology Research Group, Luxembourg Centre for Systems Biomedicine, Esch-sur-Alzette, Luxembourg.
Galata V; Systems Ecology Research Group, Luxembourg Centre for Systems Biomedicine, Esch-sur-Alzette, Luxembourg.
Heintz-Buschart A; Systems Ecology Research Group, Luxembourg Centre for Systems Biomedicine, Esch-sur-Alzette, Luxembourg.; Metagenomics Support Unit, German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.; Department of Soil Ecology, Helmholtz Centre for Environmental Research GmbH-UFZ, Halle (Saale), Germany.
Laczny CC; Systems Ecology Research Group, Luxembourg Centre for Systems Biomedicine, Esch-sur-Alzette, Luxembourg.
May P; Bioinformatics Core, Luxembourg Centre for Systems Biomedicine, Esch-sur-Alzette, Luxembourg.
Wilmes P; Systems Ecology Research Group, Luxembourg Centre for Systems Biomedicine, Esch-sur-Alzette, Luxembourg. .
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Źródło :
Microbiome [Microbiome] 2021 Feb 17; Vol. 9 (1), pp. 49. Date of Electronic Publication: 2021 Feb 17.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Video-Audio Media
MeSH Terms :
Metagenomics*
Software*
Anti-Infective Agents/*pharmacology
Drug Resistance, Bacterial/*genetics
Virulence Factors/*genetics
Anti-Bacterial Agents/pharmacology ; Drug Resistance, Bacterial/drug effects
Czasopismo naukowe
Tytuł :
Functional metagenomics reveals differential chitin degradation and utilization features across free-living and host-associated marine microbiomes.
Autorzy :
Raimundo I; Instituto de Bioengenharia e Biociências, Instituto Superior Técnico (IST), Universidade de Lisboa, Av. Rovisco Pais 1, Torre Sul, Piso 11, 11.6.11b, 1049-001, Lisbon, Portugal.
Silva R; Instituto de Bioengenharia e Biociências, Instituto Superior Técnico (IST), Universidade de Lisboa, Av. Rovisco Pais 1, Torre Sul, Piso 11, 11.6.11b, 1049-001, Lisbon, Portugal.
Meunier L; Instituto de Bioengenharia e Biociências, Instituto Superior Técnico (IST), Universidade de Lisboa, Av. Rovisco Pais 1, Torre Sul, Piso 11, 11.6.11b, 1049-001, Lisbon, Portugal.; Laboratory of Aquatic Systems Ecology, Université Libre de Bruxelles, Brussels, Belgium.
Valente SM; Instituto de Bioengenharia e Biociências, Instituto Superior Técnico (IST), Universidade de Lisboa, Av. Rovisco Pais 1, Torre Sul, Piso 11, 11.6.11b, 1049-001, Lisbon, Portugal.
Lago-Lestón A; Department of Medical Innovation, Centro de Investigación Científica y de Educación Superior de Ensenada (CICESE), 22860, Ensenada, Mexico.
Keller-Costa T; Instituto de Bioengenharia e Biociências, Instituto Superior Técnico (IST), Universidade de Lisboa, Av. Rovisco Pais 1, Torre Sul, Piso 11, 11.6.11b, 1049-001, Lisbon, Portugal. .
Costa R; Instituto de Bioengenharia e Biociências, Instituto Superior Técnico (IST), Universidade de Lisboa, Av. Rovisco Pais 1, Torre Sul, Piso 11, 11.6.11b, 1049-001, Lisbon, Portugal. .; Centro de Ciências do Mar (CCMAR), Universidade do Algarve, 8005-139, Faro, Portugal. .; Department of Energy, Joint Genome Institute, Berkeley, CA, 94720, USA. .; Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA. .
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Źródło :
Microbiome [Microbiome] 2021 Feb 14; Vol. 9 (1), pp. 43. Date of Electronic Publication: 2021 Feb 14.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Video-Audio Media
MeSH Terms :
Metagenomics*
Microbiota*/genetics
Aquatic Organisms/*microbiology
Bacteria/*metabolism
Chitin/*metabolism
Geologic Sediments/*microbiology
Seawater/*microbiology
Animals ; Anthozoa/microbiology ; Bacteria/enzymology ; Bacteria/genetics ; Chitinases/genetics ; Chitinases/metabolism ; Oceans and Seas ; Phylogeny ; Porifera/microbiology ; Symbiosis
Czasopismo naukowe
Tytuł :
Considerations for mosquito microbiome research from the Mosquito Microbiome Consortium.
Autorzy :
Dada N; Faculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway. .
Jupatanakul N; Protein-Ligand Engineering and Molecular Biology Research Team, National Center for Genetic Engineering and Biotechnology, Khlong Neung, Thailand.
Minard G; Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, F-69622, Villeurbanne, France.
Short SM; Department of Entomology, The Ohio State University, Columbus, USA.
Akorli J; Department of Parasitology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
Villegas LM; Lund, Sweden.
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Źródło :
Microbiome [Microbiome] 2021 Feb 01; Vol. 9 (1), pp. 36. Date of Electronic Publication: 2021 Feb 01.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review; Video-Audio Media
MeSH Terms :
Metagenomics*
Microbiota*
Culicidae/*microbiology
Research/*organization & administration
Research/*trends
Animals ; Reproducibility of Results
Czasopismo naukowe
Tytuł :
Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals.
Autorzy :
Keller-Costa T; Instituto de Bioengenharia e Biociências (iBB), Instituto Superior Técnico (IST), Universidade de Lisboa, Av. Rovisco Pais 1, 1049-001, Lisbon, Portugal. .
Lago-Lestón A; División de Biología Experimental y Aplicada (DBEA), Centro de Investigación Científica y de Educación Superior de Ensenada (CICESE), Carr. Ensenada-Tijuana 3918, Zona Playitas, C.P 22860, Ensenada, Baja California, Mexico. .
Saraiva JP; Helmholtz Centre for Environmental Research (UFZ), Leipzig, 04318, Germany.
Toscan R; Helmholtz Centre for Environmental Research (UFZ), Leipzig, 04318, Germany.
Silva SG; Instituto de Bioengenharia e Biociências (iBB), Instituto Superior Técnico (IST), Universidade de Lisboa, Av. Rovisco Pais 1, 1049-001, Lisbon, Portugal.
Gonçalves J; Centro de Ciências do Mar (CCMAR), Universidade do Algarve, 8005-139, Faro, Portugal.
Cox CJ; Centro de Ciências do Mar (CCMAR), Universidade do Algarve, 8005-139, Faro, Portugal.
Kyrpides N; Department of Energy, Joint Genome Institute, Berkeley, CA, 94720, USA.
Nunes da Rocha U; Helmholtz Centre for Environmental Research (UFZ), Leipzig, 04318, Germany.
Costa R; Instituto de Bioengenharia e Biociências (iBB), Instituto Superior Técnico (IST), Universidade de Lisboa, Av. Rovisco Pais 1, 1049-001, Lisbon, Portugal.; Centro de Ciências do Mar (CCMAR), Universidade do Algarve, 8005-139, Faro, Portugal.; Department of Energy, Joint Genome Institute, Berkeley, CA, 94720, USA.
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Źródło :
Microbiome [Microbiome] 2021 Mar 25; Vol. 9 (1), pp. 72. Date of Electronic Publication: 2021 Mar 25.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Video-Audio Media
MeSH Terms :
Host-Pathogen Interactions*
Metagenomics*
Phylogeny*
Anthozoa/*microbiology
Bacteria/*classification
Bacteria/*genetics
Metagenome/*genetics
Animals ; Dysbiosis ; RNA, Ribosomal, 16S/genetics
Czasopismo naukowe
Tytuł :
The hidden landscape: Evidence that sea-level change shaped the present population genomic patterns of marginal marine species.
Autorzy :
Dolby GA; Center for Mechanisms of Evolution, Biodesign Institute, School of Life Sciences, Arizona State University, Tempe, AZ, USA.
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Źródło :
Molecular ecology [Mol Ecol] 2021 Mar; Vol. 30 (6), pp. 1357-1360. Date of Electronic Publication: 2021 Mar 10.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Comment
MeSH Terms :
Ice Cover*
Metagenomics*
Ecology ; Ecosystem ; South Australia
Czasopismo naukowe
Tytuł :
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses.
Autorzy :
Guo J; Department of Microbiology, Ohio State University, Columbus, OH, 43210, USA.
Bolduc B; Department of Microbiology, Ohio State University, Columbus, OH, 43210, USA.
Zayed AA; Department of Microbiology, Ohio State University, Columbus, OH, 43210, USA.
Varsani A; The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA.; Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, Observatory, Cape Town, 7701, South Africa.
Dominguez-Huerta G; Department of Microbiology, Ohio State University, Columbus, OH, 43210, USA.
Delmont TO; Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France.
Pratama AA; Department of Microbiology, Ohio State University, Columbus, OH, 43210, USA.
Gazitúa MC; Viromica, 7870582, Santiago, Chile.
Vik D; Department of Microbiology, Ohio State University, Columbus, OH, 43210, USA.
Sullivan MB; Department of Microbiology, Ohio State University, Columbus, OH, 43210, USA. .; Civil, Environmental and Geodetic Engineering, Ohio State University, Columbus, OH, 43210, USA. .; Center of Microbiome Science, Ohio State University, Columbus, OH, 43210, USA. .
Roux S; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA. .
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Źródło :
Microbiome [Microbiome] 2021 Feb 01; Vol. 9 (1), pp. 37. Date of Electronic Publication: 2021 Feb 01.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Video-Audio Media
MeSH Terms :
Metagenomics*
Software*
DNA Viruses/*classification
Genome, Viral/*genetics
RNA Viruses/*classification
DNA Viruses/genetics ; Ecosystem ; Humans ; RNA Viruses/genetics
Czasopismo naukowe
Tytuł :
Metagenomic next-generation sequencing technology for detection of pathogens in blood of critically ill patients.
Autorzy :
Geng S; Department of Critical Care Medicine, The Affiliated Provincial Hospital of Anhui Medical University, Anhui Province, 230001, China.
Mei Q; Department of Critical Care Medicine, The First Affiliated Hospital of USTC, Division of Life Science and Medicine, University of Science and Technology of China, Hefei, Anhui Province 230001, China. Electronic address: .
Zhu C; Department of Critical Care Medicine, The First Affiliated Hospital of USTC, Division of Life Science and Medicine, University of Science and Technology of China, Hefei, Anhui Province 230001, China.
Fang X; Department of Critical Care Medicine, The First Affiliated Hospital of USTC, Division of Life Science and Medicine, University of Science and Technology of China, Hefei, Anhui Province 230001, China.
Yang T; Department of Critical Care Medicine, The First Affiliated Hospital of USTC, Division of Life Science and Medicine, University of Science and Technology of China, Hefei, Anhui Province 230001, China.
Zhang L; Department of Critical Care Medicine, The First Affiliated Hospital of USTC, Division of Life Science and Medicine, University of Science and Technology of China, Hefei, Anhui Province 230001, China.
Fan X; Department of Critical Care Medicine, The First Affiliated Hospital of USTC, Division of Life Science and Medicine, University of Science and Technology of China, Hefei, Anhui Province 230001, China.
Pan A; Department of Critical Care Medicine, The Affiliated Provincial Hospital of Anhui Medical University, Anhui Province, 230001, China; Department of Critical Care Medicine, The First Affiliated Hospital of USTC, Division of Life Science and Medicine, University of Science and Technology of China, Hefei, Anhui Province 230001, China. Electronic address: .
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Źródło :
International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases [Int J Infect Dis] 2021 Feb; Vol. 103, pp. 81-87. Date of Electronic Publication: 2020 Nov 20.
Typ publikacji :
Evaluation Study; Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Metagenomics*
Blood-Borne Infections/*microbiology
Blood-Borne Pathogens/*isolation & purification
Adult ; Aged ; Blood Culture ; Coinfection/microbiology ; Critical Illness ; Female ; Humans ; Intensive Care Units ; Male ; Middle Aged ; Retrospective Studies
Czasopismo naukowe
Tytuł :
Clinical efficacy of metagenomic next-generation sequencing for rapid detection of Mycobacterium tuberculosis in smear-negative extrapulmonary specimens in a high tuberculosis burden area.
Autorzy :
Sun W; Clinic and Research Center of Tuberculosis, Department of Tuberculosis, Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China.
Lu Z; Longhua Hospital, Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Yan L; Clinic and Research Center of Tuberculosis, Department of Tuberculosis, Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China. Electronic address: .
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Źródło :
International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases [Int J Infect Dis] 2021 Feb; Vol. 103, pp. 91-96. Date of Electronic Publication: 2020 Nov 20.
Typ publikacji :
Evaluation Study; Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Metagenomics*
Mycobacterium tuberculosis/*isolation & purification
Tuberculosis/*diagnosis
Adolescent ; Adult ; Aged ; Aged, 80 and over ; Disease Hotspot ; Female ; Humans ; Male ; Middle Aged ; Mycobacterium tuberculosis/genetics ; ROC Curve ; Sensitivity and Specificity ; Tuberculosis/epidemiology ; Tuberculosis, Meningeal/diagnosis ; Young Adult
Czasopismo naukowe
Tytuł :
Unmasking viral sequences by metagenomic next-generation sequencing in adult human blood samples during steroid-refractory/dependent graft-versus-host disease.
Autorzy :
Zanella MC; Division of Infectious Diseases, Geneva University Hospitals, 4 Rue Gabrielle-Perret-Gentil, 1211, 14, Geneva, Switzerland. .; Laboratory of Virology, Division of Laboratory Medicine, Geneva University Hospitals, 4 Rue Gabrielle-Perret-Gentil, 1211, 14, Geneva, Switzerland. .
Cordey S; Laboratory of Virology, Division of Laboratory Medicine, Geneva University Hospitals, 4 Rue Gabrielle-Perret-Gentil, 1211, 14, Geneva, Switzerland.; University of Geneva Medical School, Geneva, Switzerland.
Laubscher F; Laboratory of Virology, Division of Laboratory Medicine, Geneva University Hospitals, 4 Rue Gabrielle-Perret-Gentil, 1211, 14, Geneva, Switzerland.; University of Geneva Medical School, Geneva, Switzerland.
Docquier M; iGE3 Genomics Platform, University of Geneva, Geneva, Switzerland.; Department of Genetics and Evolution, University of Geneva, Geneva, Switzerland.
Vieille G; Laboratory of Virology, Division of Laboratory Medicine, Geneva University Hospitals, 4 Rue Gabrielle-Perret-Gentil, 1211, 14, Geneva, Switzerland.
Van Delden C; Division of Infectious Diseases, Geneva University Hospitals, 4 Rue Gabrielle-Perret-Gentil, 1211, 14, Geneva, Switzerland.; University of Geneva Medical School, Geneva, Switzerland.
Braunersreuther V; Clinical Pathology Service, Diagnostic Department, Geneva University Hospitals, Geneva, Switzerland.
Ta MK; Clinical Pathology Service, Diagnostic Department, Geneva University Hospitals, Geneva, Switzerland.
Lobrinus JA; Clinical Pathology Service, Diagnostic Department, Geneva University Hospitals, Geneva, Switzerland.
Masouridi-Levrat S; University of Geneva Medical School, Geneva, Switzerland.; Division of Hematology, Department of Oncology, Geneva University Hospitals, Geneva, Switzerland.
Chalandon Y; University of Geneva Medical School, Geneva, Switzerland.; Division of Hematology, Department of Oncology, Geneva University Hospitals, Geneva, Switzerland.
Kaiser L; Division of Infectious Diseases, Geneva University Hospitals, 4 Rue Gabrielle-Perret-Gentil, 1211, 14, Geneva, Switzerland.; Laboratory of Virology, Division of Laboratory Medicine, Geneva University Hospitals, 4 Rue Gabrielle-Perret-Gentil, 1211, 14, Geneva, Switzerland.; University of Geneva Medical School, Geneva, Switzerland.; Geneva Centre for Emerging Viral Diseases, Geneva, Switzerland.
Vu DL; Division of Infectious Diseases, Geneva University Hospitals, 4 Rue Gabrielle-Perret-Gentil, 1211, 14, Geneva, Switzerland.; Laboratory of Virology, Division of Laboratory Medicine, Geneva University Hospitals, 4 Rue Gabrielle-Perret-Gentil, 1211, 14, Geneva, Switzerland.; University of Geneva Medical School, Geneva, Switzerland.
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Źródło :
Microbiome [Microbiome] 2021 Jan 24; Vol. 9 (1), pp. 28. Date of Electronic Publication: 2021 Jan 24.
Typ publikacji :
Case Reports; Journal Article; Research Support, Non-U.S. Gov't; Video-Audio Media
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Metagenomics*
Steroids*/adverse effects
Steroids*/therapeutic use
Graft vs Host Disease/*blood
Graft vs Host Disease/*virology
Adult ; Aged ; Humans ; Male ; Middle Aged ; Prospective Studies ; Young Adult
Czasopismo naukowe
Tytuł :
ViralRecall-A Flexible Command-Line Tool for the Detection of Giant Virus Signatures in 'Omic Data.
Autorzy :
Aylward FO; Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24061, USA.
Moniruzzaman M; Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24061, USA.
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Źródło :
Viruses [Viruses] 2021 Jan 20; Vol. 13 (2). Date of Electronic Publication: 2021 Jan 20.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
MeSH Terms :
Metagenomics*
Computational Biology/*methods
Cytoplasm/*virology
Eukaryotic Cells/*virology
Giant Viruses/*classification
Amino Acid Sequence ; Biodiversity ; Gene Library ; Genome, Viral ; Giant Viruses/genetics ; Phylogeny
Czasopismo naukowe
Tytuł :
MegaR: an interactive R package for rapid sample classification and phenotype prediction using metagenome profiles and machine learning.
Autorzy :
Dhungel E; Program in Bioinformatics and Computational Biology, Saint Louis University, Saint Louis, MO, USA.
Mreyoud Y; Program in Bioinformatics and Computational Biology, Saint Louis University, Saint Louis, MO, USA.
Gwak HJ; Department of Computer Science and Engineering, Hanyang University, Seoul, Korea.
Rajeh A; Program in Bioinformatics and Computational Biology, Saint Louis University, Saint Louis, MO, USA.
Rho M; Department of Computer Science and Engineering, Hanyang University, Seoul, Korea.
Ahn TH; Program in Bioinformatics and Computational Biology, Saint Louis University, Saint Louis, MO, USA. .; Department of Computer Science, Saint Louis University, Saint Louis, MO, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Jan 18; Vol. 22 (1), pp. 25. Date of Electronic Publication: 2021 Jan 18.
Typ publikacji :
Journal Article
MeSH Terms :
Machine Learning*
Metagenome*
Metagenomics*
Humans ; Phenotype ; RNA, Ribosomal, 16S/genetics
Czasopismo naukowe
Tytuł :
Evaluation of microbial diversity of three recreational water bodies using 16S rRNA metagenomic approach.
Autorzy :
Betiku OC; Center for Water Resources, College of Agriculture and Food Sciences, Florida A&M University, Tallahassee, FL 32307, USA; Division of Agriculture Science, College of Agriculture and Food Sciences, Florida A&M University, Tallahassee, FL 32307, USA. Electronic address: .
Sarjeant KC; Division of Agriculture Science, College of Agriculture and Food Sciences, Florida A&M University, Tallahassee, FL 32307, USA.
Ngatia LW; Center for Water Resources, College of Agriculture and Food Sciences, Florida A&M University, Tallahassee, FL 32307, USA.
Aghimien MO; Department of Biological Sciences, Florida A&M University, Tallahassee, FL 32307, USA.
Odewumi CO; Department of Biological Sciences, Florida A&M University, Tallahassee, FL 32307, USA.
Latinwo LM; Department of Biological Sciences, Florida A&M University, Tallahassee, FL 32307, USA.
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Źródło :
The Science of the total environment [Sci Total Environ] 2021 Jun 01; Vol. 771, pp. 144773. Date of Electronic Publication: 2021 Jan 26.
Typ publikacji :
Journal Article
MeSH Terms :
Lakes*
Metagenomics*
Animals ; Bacteroidetes/genetics ; Humans ; Proteobacteria/genetics ; RNA, Ribosomal, 16S/genetics
Czasopismo naukowe
Tytuł :
Culture-free genome-wide locus sequence typing (GLST) provides new perspectives on Trypanosoma cruzi dispersal and infection complexity.
Autorzy :
Schwabl P; Institute of Biodiversity, Animal Health & Comparative Medicine, University of Glasgow, Glasgow, United Kingdom.
Maiguashca Sánchez J; Centro de Investigación para la Salud en América Latina, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.
Costales JA; Centro de Investigación para la Salud en América Latina, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.
Ocaña-Mayorga S; Centro de Investigación para la Salud en América Latina, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.
Segovia M; Laboratorio de Biología Molecular de Protozoarios, Instituto de Medicina Tropical, Universidad Central de Venezuela, Caracas, Venezuela.
Carrasco HJ; Laboratorio de Biología Molecular de Protozoarios, Instituto de Medicina Tropical, Universidad Central de Venezuela, Caracas, Venezuela.
Hernández C; Grupo de Investigaciones Microbiológicas-UR (GIMUR), Departamento de Biología, Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia.
Ramírez JD; Grupo de Investigaciones Microbiológicas-UR (GIMUR), Departamento de Biología, Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia.
Lewis MD; London School of Hygiene & Tropical Medicine, Keppel Street, London, United Kingdom.
Grijalva MJ; Centro de Investigación para la Salud en América Latina, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.; Infectious and Tropical Disease Institute, Biomedical Sciences Department, Heritage College of Osteopathic Medicine, Ohio University, Athens, OH, United States of America.
Llewellyn MS; Institute of Biodiversity, Animal Health & Comparative Medicine, University of Glasgow, Glasgow, United Kingdom.
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Źródło :
PLoS genetics [PLoS Genet] 2020 Dec 16; Vol. 16 (12), pp. e1009170. Date of Electronic Publication: 2020 Dec 16 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Protozoan*
Metagenome*
DNA Barcoding, Taxonomic/*methods
Metagenomics/*methods
Trypanosoma cruzi/*genetics
Whole Genome Sequencing/*methods
Animals ; Costs and Cost Analysis ; DNA Barcoding, Taxonomic/economics ; DNA Barcoding, Taxonomic/standards ; Disease Vectors ; Hemiptera/parasitology ; Metagenomics/economics ; Metagenomics/standards ; Polymorphism, Genetic ; Trypanosoma cruzi/pathogenicity ; Virulence/genetics ; Whole Genome Sequencing/economics ; Whole Genome Sequencing/standards
Czasopismo naukowe
Tytuł :
Unveiling Viruses Associated with Gastroenteritis Using a Metagenomics Approach.
Autorzy :
Fernandez-Cassi X; Laboratory of Virus Contaminants of Water and Food, Department of Genetics, Microbiology and Statistics, University of Barcelona, Barcelona 08028, Spain.
Martínez-Puchol S; Laboratory of Virus Contaminants of Water and Food, Department of Genetics, Microbiology and Statistics, University of Barcelona, Barcelona 08028, Spain.
Silva-Sales M; Laboratory of Virus Contaminants of Water and Food, Department of Genetics, Microbiology and Statistics, University of Barcelona, Barcelona 08028, Spain.; Laboratory of Virology and Cell Culture, Tropical Pathology and Public Health Institute, Federal University of Goiás, 74605-050 Goiânia, Goiás, Brazil.
Cornejo T; Hospital Universitari Vall d'Hebron, Microbiology Service, 08035 Barcelona, Spain.
Bartolome R; Hospital Universitari Vall d'Hebron, Microbiology Service, 08035 Barcelona, Spain.
Bofill-Mas S; Laboratory of Virus Contaminants of Water and Food, Department of Genetics, Microbiology and Statistics, University of Barcelona, Barcelona 08028, Spain.
Girones R; Laboratory of Virus Contaminants of Water and Food, Department of Genetics, Microbiology and Statistics, University of Barcelona, Barcelona 08028, Spain.
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Źródło :
Viruses [Viruses] 2020 Dec 13; Vol. 12 (12). Date of Electronic Publication: 2020 Dec 13.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Metagenome*
Metagenomics*/methods
Gastroenteritis/*virology
Virus Diseases/*virology
Age Factors ; Child ; Child, Preschool ; Computational Biology/methods ; Feces/virology ; Female ; Genome, Viral ; High-Throughput Nucleotide Sequencing ; Humans ; Male ; Phylogeny ; Viral Load
Czasopismo naukowe

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