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Wyszukujesz frazę ""Metagenomics"" wg kryterium: Temat


Tytuł :
Metagenomics and metatranscriptomics analyses reveal oxygen detoxification and mixotrophic potentials of an enriched anammox culture in a continuous stirred-tank reactor.
Autorzy :
Ji X; Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China.
Wu Z; Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China; Department of Civil and Environmental Engineering, Imperial College London, South Kensington Campus, London, UK.
Sung S; College of Agriculture, Forestry and Natural Resource Management University of Hawaii at Hilo, USA.
Lee PH; Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China; Department of Civil and Environmental Engineering, Imperial College London, South Kensington Campus, London, UK. Electronic address: .
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Źródło :
Water Research [Water Res] 2019 Dec 01; Vol. 166, pp. 115039. Date of Electronic Publication: 2019 Sep 05.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Pergamon Press Country of Publication: England NLM ID: 0105072 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-2448 (Electronic) Linking ISSN: 00431354 NLM ISO Abbreviation: Water Res. Subsets: MEDLINE
MeSH Terms :
Bioreactors*
Metagenomics*
Anaerobiosis ; Nitrites ; Nitrogen ; Oxidation-Reduction ; Oxygen
Czasopismo naukowe
Tytuł :
Metataxonomic and metagenomic analysis of mangrove microbiomes reveals community patterns driven by salinity and pH gradients in Paranaguá Bay, Brazil.
Autorzy :
Ceccon DM; Department of Biochemistry and Molecular Biology, Universidade Federal do Paraná, Curitiba, Brazil.
Faoro H; Department of Biochemistry and Molecular Biology, Universidade Federal do Paraná, Curitiba, Brazil.
Lana PDC; Center for Marine Studies, Universidade Federal do Paraná, Pontal do Paraná, Brazil.
Souza EM; Department of Biochemistry and Molecular Biology, Universidade Federal do Paraná, Curitiba, Brazil.
Pedrosa FO; Department of Biochemistry and Molecular Biology, Universidade Federal do Paraná, Curitiba, Brazil. Electronic address: .
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Źródło :
The Science Of The Total Environment [Sci Total Environ] 2019 Dec 01; Vol. 694, pp. 133609. Date of Electronic Publication: 2019 Jul 27.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Elsevier Country of Publication: Netherlands NLM ID: 0330500 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-1026 (Electronic) Linking ISSN: 00489697 NLM ISO Abbreviation: Sci. Total Environ. Subsets: MEDLINE
MeSH Terms :
Environmental Monitoring*
Metagenomics*
Microbiota*
Salinity*
Bays/*microbiology
Bays/chemistry ; Brazil ; Hydrogen-Ion Concentration
Czasopismo naukowe
Tytuł :
Cost-effectiveness of population genomic screening.
Autorzy :
Veenstra DL; Department of Pharmacy, University of Washington, Seattle, WA, USA. .
Guzauskas G; Department of Pharmacy, University of Washington, Seattle, WA, USA.
Peterson J; Departments of Biomedical Informatics and Medicine, Vanderbilt University, Nashville, TN, USA.
Hassen DA; Geisinger, Danville, PA, USA.
Snyder S; Geisinger, Danville, PA, USA.
Hao J; Geisinger, Danville, PA, USA.
Williams M; Geisinger, Danville, PA, USA.
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Źródło :
Genetics In Medicine: Official Journal Of The American College Of Medical Genetics [Genet Med] 2019 Dec; Vol. 21 (12), pp. 2840-2841.
Typ publikacji :
Letter; Research Support, N.I.H., Extramural; Comment
Journal Info :
Publisher: Nature Publishing Group Country of Publication: United States NLM ID: 9815831 Publication Model: Print Cited Medium: Internet ISSN: 1530-0366 (Electronic) Linking ISSN: 10983600 NLM ISO Abbreviation: Genet. Med. Subsets: MEDLINE
MeSH Terms :
Mass Screening*
Metagenomics*
Cost-Benefit Analysis ; Humans ; Young Adult
Raport
Tytuł :
Response to Veenstra et al.
Autorzy :
Lacaze P; Department of Epidemiology and Preventive Medicine, School of Public Health and Preventive Medicine, Monash University, Melbourne, VIC, Australia. .
Tiller J; Department of Epidemiology and Preventive Medicine, School of Public Health and Preventive Medicine, Monash University, Melbourne, VIC, Australia.
Bao Y; Department of Epidemiology and Preventive Medicine, School of Public Health and Preventive Medicine, Monash University, Melbourne, VIC, Australia.; School of Public Health, Nantong University, Nantong, Jiangsu, China.
Riaz M; Department of Epidemiology and Preventive Medicine, School of Public Health and Preventive Medicine, Monash University, Melbourne, VIC, Australia.
Winship I; Department of Genomic Medicine, Royal Melbourne Hospital; Department of Medicine, Royal Melbourne Hospital, University of Melbourne, Melbourne, VIC, Australia.
Zhang L; Department of Epidemiology and Preventive Medicine, School of Public Health and Preventive Medicine, Monash University, Melbourne, VIC, Australia.; Department of Epidemiology and Biostatistics, School of Public Health, Xi'an Jiaotong University Health Science Center, Xi'an, Shaanxi, China.
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Źródło :
Genetics In Medicine: Official Journal Of The American College Of Medical Genetics [Genet Med] 2019 Dec; Vol. 21 (12), pp. 2842-2843. Date of Electronic Publication: 2019 Jul 15.
Typ publikacji :
Letter; Comment
Journal Info :
Publisher: Nature Publishing Group Country of Publication: United States NLM ID: 9815831 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1530-0366 (Electronic) Linking ISSN: 10983600 NLM ISO Abbreviation: Genet. Med. Subsets: MEDLINE
MeSH Terms :
Metagenomics*
Cost-Benefit Analysis ; Humans ; Young Adult
Opinia redakcyjna
Tytuł :
Structure solution and analyses of the first true lipase obtained from metagenomics indicate potential for increased thermostability.
Autorzy :
Martini VP; Department of Chemistry, Federal University of Paraná, Rua Francisco Heráclito dos Santos, 100, Curitiba, PR, 81531-990, Brazil. Electronic address: .
Krieger N; Department of Chemistry, Federal University of Paraná, Rua Francisco Heráclito dos Santos, 100, Curitiba, PR, 81531-990, Brazil. Electronic address: .
Glogauer A; Department of Biochemistry and Molecular Biology, Federal University of Paraná, Rua Francisco Heráclito dos Santos, 100, Curitiba, PR, 81531-990, Brazil. Electronic address: .
Souza EM; Department of Biochemistry and Molecular Biology, Federal University of Paraná, Rua Francisco Heráclito dos Santos, 100, Curitiba, PR, 81531-990, Brazil. Electronic address: .
Iulek J; Department of Chemistry, State University of Ponta Grossa, Av. Carlos Cavalcanti, 4748, Ponta Grossa, PR, 84030-900, Brazil. Electronic address: .
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Źródło :
New Biotechnology [N Biotechnol] 2019 Nov 25; Vol. 53, pp. 65-72. Date of Electronic Publication: 2019 Jul 12.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Elsevier Country of Publication: Netherlands NLM ID: 101465345 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1876-4347 (Electronic) Linking ISSN: 18716784 NLM ISO Abbreviation: N Biotechnol Subsets: MEDLINE
MeSH Terms :
Metagenomics*
Temperature*
Lipase/*analysis
Lipase/*genetics
Amino Acid Sequence ; Crystallography, X-Ray ; Enzyme Stability ; Lipase/metabolism ; Molecular Dynamics Simulation ; Protein Conformation ; Protein Engineering ; Sequence Alignment ; Solutions
Czasopismo naukowe
Tytuł :
MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage.
Autorzy :
Qian J; Department of Information Engineering, University of Padova, Via Giovanni Gradenigo 6, Padova, Italy.
Comin M; Department of Information Engineering, University of Padova, Via Giovanni Gradenigo 6, Padova, Italy. .
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Źródło :
BMC Bioinformatics [BMC Bioinformatics] 2019 Nov 22; Vol. 20 (Suppl 9), pp. 367. Date of Electronic Publication: 2019 Nov 22.
Typ publikacji :
Journal Article
Journal Info :
Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE
MeSH Terms :
Algorithms*
Contig Mapping*
Metagenome*
Metagenomics*
Probability*
Statistics as Topic*
Cluster Analysis ; Databases, Genetic ; Microbiota/genetics
Czasopismo naukowe
Tytuł :
A machine learning-based service for estimating quality of genomes using PATRIC.
Autorzy :
Parrello B; Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA.; University of Chicago, Chicago, 60637, IL, USA.
Butler R; Computing, Environment, and Life Sciences Directorate, Argonne National Laboratory, 4200 S. Cass Avenue, Lemont, 60439, IL, USA.
Chlenski P; Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA. .
Olson R; Computing, Environment, and Life Sciences Directorate, Argonne National Laboratory, 4200 S. Cass Avenue, Lemont, 60439, IL, USA.
Overbeek J; Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA.; Computing, Environment, and Life Sciences Directorate, Argonne National Laboratory, 4200 S. Cass Avenue, Lemont, 60439, IL, USA.
Pusch GD; Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA.
Vonstein V; Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA.
Overbeek R; Fellowship for Interpretation of Genomes, Burr Ridge, 60527, IL, USA.; University of Chicago, Chicago, 60637, IL, USA.
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Źródło :
BMC Bioinformatics [BMC Bioinformatics] 2019 Oct 03; Vol. 20 (1), pp. 486. Date of Electronic Publication: 2019 Oct 03.
Typ publikacji :
Journal Article
Journal Info :
Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE
MeSH Terms :
Databases, Genetic*
Genome, Archaeal*
Genome, Bacterial*
Machine Learning*
Metagenomics/*methods
Metagenomics/standards ; Software
Czasopismo naukowe
Tytuł :
Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics.
Autorzy :
Zhong H; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China; Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark.
Ren H; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China; Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark.
Lu Y; Suzhou Centre for Disease Control and Prevention, Suzhou 215007, China.
Fang C; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China; Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark.
Hou G; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China.
Yang Z; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China.
Chen B; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China.
Yang F; BGI-Shenzhen, Shenzhen 518083, China; BGI Education Centre, University of Chinese Academy of Sciences, Shenzhen 518083, China.
Zhao Y; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China.
Shi Z; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China.
Zhou B; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China.
Wu J; BGI-Shenzhen, Shenzhen 518083, China.
Zou H; BGI-Shenzhen, Shenzhen 518083, China; BGI Education Centre, University of Chinese Academy of Sciences, Shenzhen 518083, China.
Zi J; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China.
Chen J; China National GeneBank, Shenzhen 518120, China.
Bao X; China National GeneBank, Shenzhen 518120, China.
Hu Y; Suzhou Centre for Disease Control and Prevention, Suzhou 215007, China.
Gao Y; Suzhou Centre for Disease Control and Prevention, Suzhou 215007, China.
Zhang J; Suzhou Centre for Disease Control and Prevention, Suzhou 215007, China.
Xu X; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China.
Hou Y; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China.
Yang H; BGI-Shenzhen, Shenzhen 518083, China; James D. Watson Institute of Genome Sciences, Hangzhou 310058, China.
Wang J; BGI-Shenzhen, Shenzhen 518083, China; James D. Watson Institute of Genome Sciences, Hangzhou 310058, China.
Liu S; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China.
Jia H; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China.
Madsen L; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China; Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark; Institute of Marine Research, P.O. Box 7800, 5020 Bergen, Norway.
Brix S; Department of Biotechnology and Biomedicine, Technical University of Denmark, Soltofts Plads, 2800 Kgs. Lyngby, Denmark.
Kristiansen K; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China; Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark. Electronic address: .
Liu F; Suzhou Centre for Disease Control and Prevention, Suzhou 215007, China. Electronic address: .
Li J; BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, Shenzhen 518120, China; School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, China. Electronic address: .
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Źródło :
Ebiomedicine [EBioMedicine] 2019 Sep; Vol. 47, pp. 373-383. Date of Electronic Publication: 2019 Sep 03.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Elsevier B.V. Country of Publication: Netherlands NLM ID: 101647039 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2352-3964 (Electronic) Linking ISSN: 23523964 NLM ISO Abbreviation: EBioMedicine Subsets: MEDLINE
MeSH Terms :
Gastrointestinal Microbiome*
Metagenome*
Metagenomics*/methods
Proteomics*/methods
Diabetes Mellitus, Type 2/*etiology
Diabetes Mellitus, Type 2/*metabolism
Chromatography, Liquid ; Diabetes Mellitus, Type 2/therapy ; Feces/virology ; Humans ; Tandem Mass Spectrometry
Czasopismo naukowe
Tytuł :
metaSPARSim: a 16S rRNA gene sequencing count data simulator.
Autorzy :
Patuzzi I; Department of Information Engineering, University of Padova, via Giovanni Gradenigo, 6, Padova, 35131, Italy.; Microbial Ecology Unit, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, 10, Legnaro (PD), 35020, Italy.
Baruzzo G; Department of Information Engineering, University of Padova, via Giovanni Gradenigo, 6, Padova, 35131, Italy.
Losasso C; Microbial Ecology Unit, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, 10, Legnaro (PD), 35020, Italy.
Ricci A; Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, 10, Legnaro (PD), 35020, Italy.
Di Camillo B; Department of Information Engineering, University of Padova, via Giovanni Gradenigo, 6, Padova, 35131, Italy. .
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Źródło :
BMC Bioinformatics [BMC Bioinformatics] 2019 Nov 22; Vol. 20 (Suppl 9), pp. 416. Date of Electronic Publication: 2019 Nov 22.
Typ publikacji :
Journal Article
Journal Info :
Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE
MeSH Terms :
Metagenomics*
Software*
High-Throughput Nucleotide Sequencing/*methods
RNA, Ribosomal, 16S/*genetics
Animals ; Computer Simulation ; DNA, Ribosomal/genetics ; Databases, Genetic ; Humans ; Metagenome
Czasopismo naukowe
Tytuł :
Long-read amplicon denoising.
Autorzy :
Kumar V; Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm 17177, Sweden.; Department of Medicine, University of California, San Diego, La Jolla 92093, CA, USA.
Vollbrecht T; Department of Medicine, University of California, San Diego, La Jolla 92093, CA, USA.
Chernyshev M; Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm 17177, Sweden.; Department of Medicine, University of California, San Diego, La Jolla 92093, CA, USA.
Mohan S; Department of Medicine, University of California, San Diego, La Jolla 92093, CA, USA.
Hanst B; Department of Biology, University of California, San Diego, La Jolla 92093, CA, USA.
Bavafa N; Department of Medicine, University of California, San Diego, La Jolla 92093, CA, USA.
Lorenzo A; Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm 17177, Sweden.; Department of Medicine, University of California, San Diego, La Jolla 92093, CA, USA.
Kumar N; Department of Medicine, University of California, San Diego, La Jolla 92093, CA, USA.
Ketteringham R; Department of Pathology, Institute of Infectious Diseases and Molecular Medicine, Faculty of Health Science, University of Cape Town, Cape Town 7925, South Africa.
Eren K; Department of Medicine, University of California, San Diego, La Jolla 92093, CA, USA.
Golden M; Department of Statistics, University of Oxford, Oxford OX1 3LB, UK.
Oliveira MF; Department of Medicine, University of California, San Diego, La Jolla 92093, CA, USA.
Murrell B; Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm 17177, Sweden.; Department of Medicine, University of California, San Diego, La Jolla 92093, CA, USA.
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Źródło :
Nucleic Acids Research [Nucleic Acids Res] 2019 Oct 10; Vol. 47 (18), pp. e104.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res. Subsets: MEDLINE
MeSH Terms :
Metagenomics*
High-Throughput Nucleotide Sequencing/*methods
RNA, Ribosomal, 16S/*genetics
Viruses/*genetics
Algorithms ; Cell Surface Display Techniques/methods ; HIV/genetics ; Phylogeny ; Sequence Alignment ; Single-Chain Antibodies/genetics ; Software
Czasopismo naukowe
Tytuł :
Four-thousand-year-old genomes show deep roots of social inequality.
Autorzy :
Callaway E
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Źródło :
Nature [Nature] 2019 Oct; Vol. 574 (7778), pp. 304-305.
Typ publikacji :
News; Comment
Journal Info :
Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE
MeSH Terms :
Genome*
Metagenomics*
Archaeology ; Socioeconomic Factors
Periodyk
Tytuł :
NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements.
Autorzy :
Connor R; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda MD 20894, USA. .
Brister R; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda MD 20894, USA. .
Buchmann JP; Charles Perkins Centre, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2006, Australia. .
Deboutte W; KU Leuven, Department of Microbiology & Immunology, Rega Institute, Leuven BE3000, Belgium. .
Edwards R; Department of Biology, San Diego State University, 5500 Campanile Dr., San Diego, CA 92182, USA. .
Martí-Carreras J; KU Leuven, Department of Microbiology & Immunology, Rega Institute, Leuven BE3000, Belgium. .
Tisza M; Lab of Cellular Oncology, NCI, NIH, Bethesda, MD 20892-4263, USA. .
Zalunin V; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda MD 20894, USA. .
Andrade-Martínez J; Research Group on Computational Biology and Microbial Ecology, Department of Biological Sciences, Universidad de los Andes, Bogotá 111711, Colombia. Max Planck Tandem Group in Computational Biology, Universidad de los Andes, Bogotá 111711, Colombia. .
Cantu A; Department of Biology, San Diego State University, 5500 Campanile Dr., San Diego, CA 92182, USA. .
D'Amour M; D'Amour & Associates, 11839 Hilltop Drive, Los Altos Hills, CA 94024, USA. .
Efremov A; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda MD 20894, USA. .
Fleischmann L; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda MD 20894, USA. .
Forero-Junco L; Research Group on Computational Biology and Microbial Ecology, Department of Biological Sciences, Universidad de los Andes, Bogotá 111711, Colombia. Max Planck Tandem Group in Computational Biology, Universidad de los Andes, Bogotá 111711, Colombia. .
Garmaeva S; Department of Genetics, University Medical Center Groningen, Groningen 9713AV, The Netherlands. .
Giluso M; Department of Biology, San Diego State University, 5500 Campanile Dr., San Diego, CA 92182, USA. .
Glickman C; Computational Bioscience Program, University of Colorado Anschutz, Aurora, CO 80045, USA. .
Henderson M; Department of Biology, San Diego State University, 5500 Campanile Dr., San Diego, CA 92182, USA. .
Kellman B; Bioinformatics and Systems Biology Program, University of California at San Diego, 9500 Gilman Dr., La Jolla, CA 92093, USA. .
Kristensen D; Department of Biomedical Engineering, University of Iowa, Iowa City, IA 52242, USA. .
Leubsdorf C; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda MD 20894, USA. .
Levi K; Department of Biology, San Diego State University, 5500 Campanile Dr., San Diego, CA 92182, USA. .
Levi S; Department of Biology, San Diego State University, 5500 Campanile Dr., San Diego, CA 92182, USA. .
Pakala S; Division of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232, USA. .
Peddu V; Department of Laboratory Medicine, University of Washington Virology, 1616 Eastlake Ave E, Seattle, WA 98102, USA. .
Ponsero A; Department of Biosystems Engineering, University of Arizona, Tucson, AZ 85716, USA. .
Ribeiro E; MITRE Corporation, 7515 Colshire Drive, McLean, VA 22102-7539, USA. .
Roy F; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA. .
Rutter L; University of Tsukuba, Ibaraki 305-8575, Japan. .
Saha S; Boyce Thompson Institute, Ithaca, NY 14853, USA. .
Shakya M; Bioscience Division, Los Alamos National Lab, Los Alamos, NM 87545, USA. .
Shean R; Department of Laboratory Medicine, University of Washington Virology, 1616 Eastlake Ave E, Seattle, WA 98102, USA. .
Miller M; Department of Biosystems Engineering, University of Arizona, Tucson, AZ 85716, USA. .
Tully B; Center for Dark Energy Biosphere Investigations, University of Southern California, Los Angeles, CA 90089, USA. .
Turkington C; School of Natural Sciences, University of California Merced, Merced, CA 95343, USA. .
Youens-Clark K; Department of Biosystems Engineering, University of Arizona, Tucson, AZ 85716, USA. .
Vanmechelen B; KU Leuven, Department of Microbiology & Immunology, Rega Institute, Leuven BE3000, Belgium. .
Busby B; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda MD 20894, USA. .
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Źródło :
Genes [Genes (Basel)] 2019 Sep 16; Vol. 10 (9). Date of Electronic Publication: 2019 Sep 16.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE
MeSH Terms :
Genome, Viral*
Metagenome*
Cloud Computing/*standards
Metagenomics/*methods
Big Data ; Genome, Human ; Humans ; Metagenomics/standards ; Software
Czasopismo naukowe
Tytuł :
Inorganic and organic fertilizers application enhanced antibiotic resistome in greenhouse soils growing vegetables.
Autorzy :
Sun Y; Beijing Agro-Biotechnology Research Center, Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Qiu T; Beijing Agro-Biotechnology Research Center, Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Gao M; Beijing Agro-Biotechnology Research Center, Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Shi M; Beijing Agro-Biotechnology Research Center, Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China; College of Chemical Engineering, Northeast Dianli University, Jilin 132012, China.
Zhang H; College of Chemical Engineering, Northeast Dianli University, Jilin 132012, China.
Wang X; Beijing Agro-Biotechnology Research Center, Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China. Electronic address: .
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Źródło :
Ecotoxicology And Environmental Safety [Ecotoxicol Environ Saf] 2019 Sep 15; Vol. 179, pp. 24-30. Date of Electronic Publication: 2019 Apr 23.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Elsevier Country of Publication: Netherlands NLM ID: 7805381 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1090-2414 (Electronic) Linking ISSN: 01476513 NLM ISO Abbreviation: Ecotoxicol. Environ. Saf. Subsets: MEDLINE
MeSH Terms :
Metagenomics*
Soil Microbiology*
Crop Production/*methods
Drug Resistance, Microbial/*genetics
Fertilizers/*analysis
Manure/*analysis
Vegetables/*growth & development
Fertilizers/microbiology ; Genes, Bacterial ; Manure/microbiology ; Soil/chemistry
Czasopismo naukowe
Tytuł :
Gut microbiome alteration in MORDOR I: a community-randomized trial of mass azithromycin distribution.
Autorzy :
Doan T; Francis I Proctor Foundation, University of California, San Francisco, CA, USA. .; Department of Ophthalmology, University of California, San Francisco, CA, USA. .
Hinterwirth A; Francis I Proctor Foundation, University of California, San Francisco, CA, USA.
Worden L; Francis I Proctor Foundation, University of California, San Francisco, CA, USA.
Arzika AM; The Carter Center, Niamey, Niger.
Maliki R; The Carter Center, Niamey, Niger.
Abdou A; Ministry of Public Health, Niamey, Niger.; Programme National de Soins Oculaires, Niamey, Niger.
Kane S; The Carter Center, Niamey, Niger.
Zhong L; Francis I Proctor Foundation, University of California, San Francisco, CA, USA.
Cummings SL; Francis I Proctor Foundation, University of California, San Francisco, CA, USA.
Sakar S; Francis I Proctor Foundation, University of California, San Francisco, CA, USA.
Chen C; Francis I Proctor Foundation, University of California, San Francisco, CA, USA.
Cook C; Francis I Proctor Foundation, University of California, San Francisco, CA, USA.
Lebas E; Francis I Proctor Foundation, University of California, San Francisco, CA, USA.
Chow ED; Department of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.
Nachamkin I; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Porco TC; Francis I Proctor Foundation, University of California, San Francisco, CA, USA.; Department of Ophthalmology, University of California, San Francisco, CA, USA.; Department of Epidemiology and Biostatistics, University of California, San Francisco, CA, USA.
Keenan JD; Francis I Proctor Foundation, University of California, San Francisco, CA, USA.; Department of Ophthalmology, University of California, San Francisco, CA, USA.
Lietman TM; Francis I Proctor Foundation, University of California, San Francisco, CA, USA.; Department of Ophthalmology, University of California, San Francisco, CA, USA.; Department of Epidemiology and Biostatistics, University of California, San Francisco, CA, USA.; Institute for Global Health Sciences, University of California, San Francisco, CA, USA.
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Źródło :
Nature Medicine [Nat Med] 2019 Sep; Vol. 25 (9), pp. 1370-1376. Date of Electronic Publication: 2019 Aug 12.
Typ publikacji :
Journal Article; Randomized Controlled Trial; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Nature Publishing Company Country of Publication: United States NLM ID: 9502015 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-170X (Electronic) Linking ISSN: 10788956 NLM ISO Abbreviation: Nat. Med. Subsets: MEDLINE
MeSH Terms :
Metagenomics*
Azithromycin/*administration & dosage
Campylobacter Infections/*drug therapy
Gastrointestinal Microbiome/*drug effects
Campylobacter/drug effects ; Campylobacter/pathogenicity ; Campylobacter Infections/genetics ; Campylobacter Infections/mortality ; Child ; Child Mortality ; Child, Preschool ; Drug Resistance, Bacterial/drug effects ; Drug Resistance, Bacterial/genetics ; Gene Expression Regulation, Bacterial/drug effects ; Humans ; Macrolides/administration & dosage ; Male ; Nigeria/epidemiology ; Sequence Analysis, RNA
Czasopismo naukowe
Tytuł :
Molecular cloning, expression and characterization of a novel feruloyl esterase from a soil metagenomic library with phthalate-degrading activity.
Autorzy :
Wu S; Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Nan F; Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Jiang J; Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Qiu J; Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Zhang Y; Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Qiao B; Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Li S; Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Xin Z; Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China. .
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Źródło :
Biotechnology Letters [Biotechnol Lett] 2019 Sep; Vol. 41 (8-9), pp. 995-1006. Date of Electronic Publication: 2019 May 17.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Kluwer Academic Publishers Country of Publication: Netherlands NLM ID: 8008051 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1573-6776 (Electronic) Linking ISSN: 01415492 NLM ISO Abbreviation: Biotechnol. Lett. Subsets: MEDLINE
MeSH Terms :
Metagenomics*
Soil Microbiology*
Carboxylic Ester Hydrolases/*metabolism
DNA/*isolation & purification
Phthalic Acids/*metabolism
Biotransformation ; Carboxylic Ester Hydrolases/chemistry ; Carboxylic Ester Hydrolases/genetics ; Carboxylic Ester Hydrolases/isolation & purification ; Cloning, Molecular ; DNA/genetics ; Enzyme Stability ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Gene Expression ; Hydrogen-Ion Concentration ; Molecular Weight ; Recombinant Proteins/chemistry ; Recombinant Proteins/genetics ; Recombinant Proteins/isolation & purification ; Recombinant Proteins/metabolism ; Sequence Homology, Amino Acid ; Substrate Specificity ; Temperature
Czasopismo naukowe
Tytuł :
Messages from the third International Conference on Clinical Metagenomics (ICCMg3).
Autorzy :
Ruppé E; AP-HP, Hôpital Bichat-Claude Bernard, Laboratoire de Bactériologie, F-75018, Paris, France; INSERM, IAME, UMR 1137, F-75018, Paris, France; Université Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cité, F-75018, Paris, France. Electronic address: .
Schrenzel J; Bacteriology and Genomics Research Laboratories, Division of Infectious Diseases, Geneva University Hospitals and Geneva University, 4 rue Gabrielle-Perret-Gentil, 1205, Geneva, Switzerland.
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Źródło :
Microbes And Infection [Microbes Infect] 2019 Aug - Sep; Vol. 21 (7), pp. 273-277. Date of Electronic Publication: 2019 Mar 02.
Typ publikacji :
Congress
Journal Info :
Publisher: Elsevier Country of Publication: France NLM ID: 100883508 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1769-714X (Electronic) Linking ISSN: 12864579 NLM ISO Abbreviation: Microbes Infect. Subsets: MEDLINE
MeSH Terms :
Clinical Laboratory Techniques*/standards
Clinical Laboratory Techniques*/trends
Metagenomics*/standards
Metagenomics*/statistics & numerical data
Communicable Diseases/*diagnosis
Communicable Diseases/microbiology ; Computational Biology/standards ; Computational Biology/trends ; High-Throughput Nucleotide Sequencing/standards ; High-Throughput Nucleotide Sequencing/trends ; Humans ; Metagenome/genetics ; Microbiota/genetics
Tytuł :
Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial.
Autorzy :
Junier T; Global Health Institute, Swiss Federal Institute of Technology (ETH Lausanne) & SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland. .
Huber M; Institute of Medical Virology, University of Zurich, 8057 Zurich, Switzerland. .
Schmutz S; Institute of Medical Virology, University of Zurich, 8057 Zurich, Switzerland.
Kufner V; Institute of Medical Virology, University of Zurich, 8057 Zurich, Switzerland.
Zagordi O; Institute of Medical Virology, University of Zurich, 8057 Zurich, Switzerland.
Neuenschwander S; Institute for Infectious Diseases, University of Bern, 3001 Bern, Switzerland.
Ramette A; Institute for Infectious Diseases, University of Bern, 3001 Bern, Switzerland.
Kubacki J; Institute of Virology, VetSuisse Faculty, University of Zurich, 8057 Zurich, Switzerland.
Bachofen C; Institute of Virology, VetSuisse Faculty, University of Zurich, 8057 Zurich, Switzerland.
Qi W; Functional Genomics Center Zurich, Swiss Federal Institute of Technology (ETH Zurich) & University of Zurich, 8057 Zurich, Switzerland.
Laubscher F; Laboratory of Virology, University Hospitals of Geneva, 1205 Geneva, Switzerland.
Cordey S; Laboratory of Virology, University Hospitals of Geneva, 1205 Geneva, Switzerland.
Kaiser L; Laboratory of Virology, University Hospitals of Geneva, 1205 Geneva, Switzerland.
Beuret C; Biology Department, Spiez Laboratory, 3700 Spiez, Switzerland.
Barbié V; Clinical Bioinformatics, SIB Swiss Institute of Bioinformatics, 1202 Geneva, Switzerland.
Fellay J; Global Health Institute, Swiss Federal Institute of Technology (ETH Lausanne) & SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.; Precision Medicine Unit, Lausanne University Hospital and University of Lausanne, 1010 Lausanne, Switzerland.
Lebrand A; Clinical Bioinformatics, SIB Swiss Institute of Bioinformatics, 1202 Geneva, Switzerland. .
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Źródło :
Genes [Genes (Basel)] 2019 Aug 28; Vol. 10 (9). Date of Electronic Publication: 2019 Aug 28.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE
MeSH Terms :
Genome, Viral*
Metagenome*
Clinical Laboratory Services/*standards
Laboratory Proficiency Testing/*methods
Metagenomics/*standards
Sequence Analysis/*standards
Genome, Human ; Humans ; Metagenomics/methods ; Sequence Analysis/methods ; Switzerland
Czasopismo naukowe
Tytuł :
Whole metagenomic shotgun sequencing of the subgingival microbiome of diabetics and non-diabetics with different periodontal conditions.
Autorzy :
Farina R; Research Centre for the Study of Periodontal and Peri-Implant Diseases, University of Ferrara, Italy; Operative Unit of Dentistry, University-Hospital of Ferrara, Italy. Electronic address: .
Severi M; Research Centre for the Study of Periodontal and Peri-Implant Diseases, University of Ferrara, Italy.
Carrieri A; Department of Life Sciences and Biotechnology - Section of Biology and Evolution, University of Ferrara, Italy.
Miotto E; Department of Life Sciences and Biotechnology - Section of Pathology and Applied Microbiology,University of Ferrara, Italy.
Sabbioni S; Department of Life Sciences and Biotechnology - Section of Pathology and Applied Microbiology,University of Ferrara, Italy.
Trombelli L; Research Centre for the Study of Periodontal and Peri-Implant Diseases, University of Ferrara, Italy; Operative Unit of Dentistry, University-Hospital of Ferrara, Italy.
Scapoli C; Research Centre for the Study of Periodontal and Peri-Implant Diseases, University of Ferrara, Italy; Department of Life Sciences and Biotechnology - Section of Biology and Evolution, University of Ferrara, Italy.
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Źródło :
Archives Of Oral Biology [Arch Oral Biol] 2019 Aug; Vol. 104, pp. 13-23. Date of Electronic Publication: 2019 May 25.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Pergamon Press Country of Publication: England NLM ID: 0116711 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-1506 (Electronic) Linking ISSN: 00039969 NLM ISO Abbreviation: Arch. Oral Biol. Subsets: Dentistry; MEDLINE
MeSH Terms :
Dental Plaque*
Diabetes Mellitus, Type 2*/complications
Diabetes Mellitus, Type 2*/microbiology
Metagenomics*
Microbiota*
Mouth*/microbiology
Periodontitis*/complications
Periodontitis*/microbiology
Gingiva ; Humans
Czasopismo naukowe
Tytuł :
Metagenomic and metatranscriptomic analyses reveal activity and hosts of antibiotic resistance genes in activated sludge.
Autorzy :
Liu Z; Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, PR China; Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen, Guangdong, PR China.
Klümper U; ESI & CLES, Biosciences, University of Exeter, Penryn Campus, Cornwall, United Kingdom; European Centre for Environment and Human Health, University of Exeter, Truro, United Kingdom.
Liu Y; Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, PR China.
Yang Y; Laboratory of Environmental Microbiology and Toxicology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China.
Wei Q; Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, PR China.
Lin JG; Institute of Environmental Engineering, National Chiao Tung University, 1001 University Road, Hsinchu City 30010, Taiwan.
Gu JD; Laboratory of Environmental Microbiology and Toxicology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China. Electronic address: .
Li M; Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, PR China. Electronic address: .
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Źródło :
Environment International [Environ Int] 2019 Aug; Vol. 129, pp. 208-220. Date of Electronic Publication: 2019 May 23.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Elsevier Science Country of Publication: Netherlands NLM ID: 7807270 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-6750 (Electronic) Linking ISSN: 01604120 NLM ISO Abbreviation: Environ Int Subsets: MEDLINE
MeSH Terms :
Drug Resistance, Microbial*/genetics
Metagenomics*
Sewage/*microbiology
Anti-Bacterial Agents/pharmacology ; RNA, Ribosomal, 16S/genetics ; Taiwan ; Waste Water/microbiology
Czasopismo naukowe
Tytuł :
The bacterial aetiology of pleural empyema. A descriptive and comparative metagenomic study.
Autorzy :
Dyrhovden R; Department of Microbiology, Haukeland University Hospital, Bergen, Norway. Electronic address: .
Nygaard RM; Department of Microbiology, Haukeland University Hospital, Bergen, Norway.
Patel R; Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester MN, USA; Division of Infectious Diseases, Department of Medicine, Mayo Clinic, Rochester MN, USA.
Ulvestad E; Department of Microbiology, Haukeland University Hospital, Bergen, Norway; Department of Clinical Science, University of Bergen, Bergen, Norway.
Kommedal Ø; Department of Microbiology, Haukeland University Hospital, Bergen, Norway.
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Źródło :
Clinical Microbiology And Infection: The Official Publication Of The European Society Of Clinical Microbiology And Infectious Diseases [Clin Microbiol Infect] 2019 Aug; Vol. 25 (8), pp. 981-986. Date of Electronic Publication: 2018 Dec 21.
Typ publikacji :
Comparative Study; Journal Article
Journal Info :
Publisher: Elsevier Country of Publication: England NLM ID: 9516420 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-0691 (Electronic) Linking ISSN: 1198743X NLM ISO Abbreviation: Clin. Microbiol. Infect. Subsets: MEDLINE
MeSH Terms :
Metagenomics*
Bacteria/*classification
Empyema, Pleural/*microbiology
Adolescent ; Adult ; Aged ; Aged, 80 and over ; Bacterial Proteins/genetics ; Brain Abscess/microbiology ; Community-Acquired Infections/microbiology ; Female ; High-Throughput Nucleotide Sequencing ; Humans ; Male ; Middle Aged ; Mouth/microbiology ; Norway ; Pleural Effusion/microbiology ; Pneumonia, Bacterial/complications ; RNA, Ribosomal, 16S/genetics ; Retrospective Studies ; Risk Factors ; Young Adult
Czasopismo naukowe

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