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Tytuł:
Gut diversity and the resistome as biomarkers of febrile neutropenia outcome in paediatric oncology patients undergoing hematopoietic stem cell transplantation.
Autorzy:
Sardzikova, Sara (AUTHOR)
Andrijkova, Kristina (AUTHOR)
Svec, Peter (AUTHOR)
Beke, Gabor (AUTHOR)
Klucar, Lubos (AUTHOR)
Minarik, Gabriel (AUTHOR)
Bielik, Viktor (AUTHOR)
Kolenova, Alexandra (AUTHOR)
Soltys, Katarina (AUTHOR)
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Źródło:
Scientific Reports. 3/6/2024, Vol. 14 Issue 1, p1-22. 22p.
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Utilizing a Metagenome Assembled Genome Approach Revealed Further Insights into Microbially Mediated Heavy-Metal Resistance in Soils from a Former Nuclear Materials Production Facility.
Autorzy:
Kommu, Navya
Stothard, Paul
Chukwujindu, Christian
Pathak, Ashish
Chauhan, Ashvini
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Źródło:
Applied Microbiology (2673-8007). Mar2024, Vol. 4 Issue 1, p376-389. 14p.
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Detection of Klebsiella pneumoniae in healthy poultry: Insights and perspectives from culturing and metagenomics.
Autorzy:
Kaspersen, Håkon (AUTHOR)
Urdahl, Anne Margrete (AUTHOR)
Ilag, Hanna Karin (AUTHOR)
Franklin‐Alming, Fiona Valerie (AUTHOR)
Haverkamp, Thomas H. A. (AUTHOR)
Sunde, Marianne (AUTHOR)
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Źródło:
Environmental Microbiology Reports. Feb2024, Vol. 16 Issue 1, p1-10. 10p.
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
RAPID prep : A Simple, Fast Protocol for RNA Metagenomic Sequencing of Clinical Samples.
Autorzy:
Tulloch RL; Centre for Virus Research, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia.; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.
Kim K; Centre for Virus Research, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia.; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.
Sikazwe C; PathWest Laboratory Medicine WA, Department of Microbiology, Nedlands, WA 6009, Australia.; School of Biomedical Sciences, The University of Western Australia, Crawley, WA 6009, Australia.
Michie A; PathWest Laboratory Medicine WA, Department of Microbiology, Nedlands, WA 6009, Australia.; School of Biomedical Sciences, The University of Western Australia, Crawley, WA 6009, Australia.
Burrell R; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.; Departments of Infectious Diseases and Microbiology, The Children's Hospital at Westmead, Westmead, NSW 2145, Australia.
Holmes EC; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.
Dwyer DE; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.; NSW Health Pathology Institute for Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.
Britton PN; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.; Departments of Infectious Diseases and Microbiology, The Children's Hospital at Westmead, Westmead, NSW 2145, Australia.
Kok J; NSW Health Pathology Institute for Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.
Eden JS; Centre for Virus Research, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia.; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.
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Źródło:
Viruses [Viruses] 2023 Apr 19; Vol. 15 (4). Date of Electronic Publication: 2023 Apr 19.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Metagenomics*/methods
High-Throughput Nucleotide Sequencing*/methods
Humans ; Metagenome ; Genomics ; RNA, Viral/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Bioinformatic Tools for NGS-Based Metagenomics to Improve the Clinical Diagnosis of Emerging, Re-Emerging and New Viruses.
Autorzy:
Ibañez-Lligoña M; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Av. Monforte de Lemos, 3-5, 28029 Madrid, Spain.; Biochemistry and Molecular Biology Department, Universitat Autònoma de Barcelona (UAB), Campus de la UAB, Plaça Cívica, 08193 Bellaterra, Spain.
Colomer-Castell S; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Av. Monforte de Lemos, 3-5, 28029 Madrid, Spain.; Biochemistry and Molecular Biology Department, Universitat Autònoma de Barcelona (UAB), Campus de la UAB, Plaça Cívica, 08193 Bellaterra, Spain.
González-Sánchez A; Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.
Gregori J; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.
Campos C; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Av. Monforte de Lemos, 3-5, 28029 Madrid, Spain.; Biochemistry and Molecular Biology Department, Universitat Autònoma de Barcelona (UAB), Campus de la UAB, Plaça Cívica, 08193 Bellaterra, Spain.
Garcia-Cehic D; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Av. Monforte de Lemos, 3-5, 28029 Madrid, Spain.
Andrés C; Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.
Piñana M; Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.
Pumarola T; Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Microbiology Department, Universitat Autònoma de Barcelona (UAB), Campus de la UAB, Plaça Cívica, 08193 Bellaterra, Spain.
Rodríguez-Frias F; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Av. Monforte de Lemos, 3-5, 28029 Madrid, Spain.; Department of Basic Sciences, Universitat Internacional de Catalunya, Sant Cugat del Vallès, 08195 Barcelona, Spain.
Antón A; Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Microbiology Department, Universitat Autònoma de Barcelona (UAB), Campus de la UAB, Plaça Cívica, 08193 Bellaterra, Spain.
Quer J; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Av. Monforte de Lemos, 3-5, 28029 Madrid, Spain.; Biochemistry and Molecular Biology Department, Universitat Autònoma de Barcelona (UAB), Campus de la UAB, Plaça Cívica, 08193 Bellaterra, Spain.
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Źródło:
Viruses [Viruses] 2023 Feb 20; Vol. 15 (2). Date of Electronic Publication: 2023 Feb 20.
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
Metagenomics*
Viruses*/genetics
Antiviral Agents ; Computational Biology ; Pandemics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
High-throughput DNA extraction and cost-effective miniaturized metagenome and amplicon library preparation of soil samples for DNA sequencing.
Autorzy:
Jensen TBN; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Dall SM; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Knutsson S; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Karst SM; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Albertsen M; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
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Źródło:
PloS one [PLoS One] 2024 Apr 04; Vol. 19 (4), pp. e0301446. Date of Electronic Publication: 2024 Apr 04 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Metagenome*
High-Throughput Nucleotide Sequencing*/methods
Cost-Benefit Analysis ; Sequence Analysis, DNA/methods ; DNA ; Soil ; Metagenomics/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Genomic analyses of Symbiomonas scintillans show no evidence for endosymbiotic bacteria but does reveal the presence of giant viruses.
Autorzy:
Cho A; Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
Lax G; Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
Livingston SJ; Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
Masukagami Y; Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan.
Naumova M; Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan.
Millar O; Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan.
Husnik F; Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan.
Keeling PJ; Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
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Źródło:
PLoS genetics [PLoS Genet] 2024 Apr 01; Vol. 20 (4), pp. e1011218. Date of Electronic Publication: 2024 Apr 01 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Giant Viruses*/genetics
Chlorophyta*/genetics
Phylogeny ; Genome, Viral/genetics ; Metagenomics ; Bacteria/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Towards a unified medical microbiome ecology of the OMU for metagenomes and the OTU for microbes.
Autorzy:
Ma ZS; Computational Biology and Medical Ecology Lab, State Key Lab of Genetic Resources and Evolution, Center for Excellence in Animal Evolution and Genetics, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China. .; Microbiome Medicine and Advanced AI Lab, Cambridge, MA, 02138, USA. .; Faculty of Arts and Science, Harvard University, Cambridge, MA, 02138, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 29; Vol. 25 (1), pp. 137. Date of Electronic Publication: 2024 Mar 29.
Typ publikacji:
Journal Article
MeSH Terms:
Microbiota*/genetics
Gastrointestinal Microbiome*
Animals ; Humans ; Metagenome ; Biodiversity ; Sequence Analysis, DNA ; Metagenomics/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Towards personalised anti-microbial and immune approaches to infections in acute care. Can real-time genomic-informed diagnosis of pathogens, and immune-focused therapies improve outcomes for patients? An observational, experimental study protocol.
Autorzy:
Quarton S; Birmingham Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.; Institute of Inflammation & Ageing, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom.
McGee K; Birmingham Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.; Institute of Inflammation & Ageing, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom.
Cumley N; Birmingham Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.; Institute of Microbiology & Infection, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom.
Behruznia M; Birmingham Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.; Institute of Microbiology & Infection, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom.
Jeff C; Birmingham Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.
Belchamber K; Birmingham Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.; Institute of Inflammation & Ageing, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom.
Cox M; Birmingham Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.; Institute of Microbiology & Infection, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom.
Thickett D; Birmingham Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.; Institute of Inflammation & Ageing, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom.
Scott A; Birmingham Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.; Institute of Inflammation & Ageing, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom.
Parekh D; Birmingham Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.; Institute of Inflammation & Ageing, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom.
McNally A; Birmingham Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.; Institute of Microbiology & Infection, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom.
Sapey E; Birmingham Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.; Director of PIONEER: Health Data Research UK (HDRUK) Health Data Research Hub for Acute Care, Institute of Inflammation and Ageing, University of Birmingham, Birmingham, United Kingdom.; Patient Safety Research Collaborative, University Hospitals Birmingham NHS Foundation Trust, Birmingham, United Kingdom.
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Źródło:
PloS one [PLoS One] 2024 Mar 29; Vol. 19 (3), pp. e0298425. Date of Electronic Publication: 2024 Mar 29 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Anti-Bacterial Agents*/therapeutic use
Respiratory Tract Infections*/diagnosis
Humans ; Bronchoalveolar Lavage ; Research Design ; Metagenomics ; Observational Studies as Topic
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Comparison of the effectiveness of different normalization methods for metagenomic cross-study phenotype prediction under heterogeneity.
Autorzy:
Wang B; Frontier Science Center for Nonlinear Expectations, Ministry of Education, Qingdao, 266237, China.; Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China.; School of Mathematics, Shandong University, Jinan, 250100, China.
Sun F; Quantitative and Computational Biology Department, University of Southern California, Los Angeles, 90089, USA.
Luan Y; Frontier Science Center for Nonlinear Expectations, Ministry of Education, Qingdao, 266237, China. .; Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China. .; School of Mathematics, Shandong University, Jinan, 250100, China. .
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Źródło:
Scientific reports [Sci Rep] 2024 Mar 25; Vol. 14 (1), pp. 7024. Date of Electronic Publication: 2024 Mar 25.
Typ publikacji:
Journal Article
MeSH Terms:
Microbiota*/genetics
Humans ; Metagenome ; Metagenomics ; Research Design ; Phenotype
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management.
Autorzy:
Ishizuka TK; Institute of Biology, State University of Campinas, Campinas, Brazil.; Corteva Agriscience, Mogi Mirim, São Paulo, Brazil.
Cordeiro EMG; Department of Entomology, University of São Paulo-ESALQ/USP, Piracicaba, Brazil.
Alves-Pereira A; Institute of Biology, State University of Campinas, Campinas, Brazil.
de Araújo Batista CE; Department of Genetics, University of São Paulo-ESALQ/USP, Piracicaba, Brazil.
Murúa MG; Instituto de Bioprospección y Fisiología Vegetal (INBIOFIV), CONICET-UNT, Tucumán, Argentina.
Pinheiro JB; Department of Genetics, University of São Paulo-ESALQ/USP, Piracicaba, Brazil.
Sethi A; Corteva Agriscience, Johnston, Iowa, United States of America.
Nagoshi RN; United States Department of Agriculture-Agricultural Research Service, Gainesville, Florida, United States of America.
Foresti J; Corteva Agriscience, Mogi Mirim, São Paulo, Brazil.
Zucchi MI; Institute of Biology, State University of Campinas, Campinas, Brazil.; Agência Paulista de Tecnologia dos Agronegócios, Pólo Regional Centro-Sul, Piracicaba, Brazil.
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Źródło:
PloS one [PLoS One] 2023 Apr 18; Vol. 18 (4), pp. e0284587. Date of Electronic Publication: 2023 Apr 18 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
MeSH Terms:
Metagenomics*
Pest Control*
Animals ; Spodoptera/genetics ; Genotype ; Brazil ; Zea mays/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection.
Autorzy:
Xu R; Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.; Center for the Ecology of Infectious Diseases, University of Georgia, Athens, Georgia, United States of America.
Rajeev S; Department of Biomedical and Diagnostic Sciences, College of Veterinary Medicine, University of Tennessee, Knoxville, Tennessee, United States of America.
Salvador LCM; Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.; Center for the Ecology of Infectious Diseases, University of Georgia, Athens, Georgia, United States of America.; Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.
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Źródło:
PloS one [PLoS One] 2023 Apr 07; Vol. 18 (4), pp. e0284031. Date of Electronic Publication: 2023 Apr 07 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Metagenomics*/methods
Microbiota*/genetics
Animals ; Mice ; Software ; Algorithms ; Metagenome ; Sequence Analysis, DNA/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Rhometa: Population recombination rate estimation from metagenomic read datasets.
Autorzy:
Krishnan S; Climate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.
DeMaere MZ; Australian Institute for Microbiology & Infection, University of Technology Sydney, Sydney, NSW, Australia.
Beck D; Centre for Health Technologies and the School of Biomedical Engineering, University of Technology Sydney, Sydney, NSW, Australia.
Ostrowski M; Climate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.
Seymour JR; Climate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.
Darling AE; Australian Institute for Microbiology & Infection, University of Technology Sydney, Sydney, NSW, Australia.; Illumina Australia Pty Ltd, Ultimo, NSW, Australia.
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Źródło:
PLoS genetics [PLoS Genet] 2023 Mar 27; Vol. 19 (3), pp. e1010683. Date of Electronic Publication: 2023 Mar 27 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Metagenomics*/methods
Metagenome*/genetics
Sequence Analysis, DNA/methods ; Likelihood Functions ; High-Throughput Nucleotide Sequencing/methods ; Software ; Recombination, Genetic/genetics ; Algorithms
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Controlling taxa abundance improves metatranscriptomics differential analysis.
Autorzy:
Ji Z; Department of Biostatistics and Bioinformatics, Duke University, Durham, USA. .
Ma L; Department of Biostatistics and Bioinformatics, Duke University, Durham, USA. .; Department of Statistical Science, Duke University, Durham, USA. .
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Źródło:
BMC microbiology [BMC Microbiol] 2023 Mar 07; Vol. 23 (1), pp. 60. Date of Electronic Publication: 2023 Mar 07.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Metagenomics*
RNA*
Computer Simulation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Population genomics and subgenome evolution of the allotetraploid frog Xenopus laevis in southern Africa.
Autorzy:
Premachandra T; Department of Biology, McMaster University, Life Sciences Building Room 328, 1280 Main Street West, Hamilton, ON L8S4K1, Canada.
Cauret CMS; Department of Biology, McMaster University, Life Sciences Building Room 328, 1280 Main Street West, Hamilton, ON L8S4K1, Canada.; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.
Conradie W; Port Elizabeth Museum (Bayworld), P.O. Box 13147, Humewood, Gqeberha 6013, South Africa.; Department of Conservation Management, Natural Resource Science and Management Cluster, Faculty of Science, Nelson Mandela University, George Campus, George 6019, South Africa.
Measey J; Centre for Invasion Biology, Department of Botany and Zoology, Stellenbosch University, Stellenbosch 7602, South Africa.
Evans BJ; Department of Biology, McMaster University, Life Sciences Building Room 328, 1280 Main Street West, Hamilton, ON L8S4K1, Canada.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Feb 09; Vol. 13 (2).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Metagenomics*
Genome*
Animals ; Xenopus laevis/genetics ; Genomics ; Africa, Southern ; Evolution, Molecular ; Phylogeny
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Metagenomics in infectious disease diagnostics: Toward best-use practices to optimize actionable results.
Autorzy:
Parrish NF; Section of Surgical Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, USA.; RIKEN Center for Integrative Medical Sciences, RIKEN Yokohama Institute, Yokohama, Japan.
Gaston DC; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
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Źródło:
Transplant infectious disease : an official journal of the Transplantation Society [Transpl Infect Dis] 2023 Feb; Vol. 25 (1), pp. e13959. Date of Electronic Publication: 2022 Dec 26.
Typ publikacji:
Editorial
MeSH Terms:
Metagenomics*/methods
Communicable Diseases*
Humans ; High-Throughput Nucleotide Sequencing/methods ; Sensitivity and Specificity
Opinia redakcyjna
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
Autorzy:
Portik DM; Pacific Biosciences, 1305 O'Brien Dr, Menlo Park, CA, 93025, USA. .
Brown CT; Department of Population Health and Reproduction, University of California Davis, Davis, CA, USA.
Pierce-Ward NT; Department of Population Health and Reproduction, University of California Davis, Davis, CA, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2022 Dec 13; Vol. 23 (1), pp. 541. Date of Electronic Publication: 2022 Dec 13.
Typ publikacji:
Journal Article
MeSH Terms:
Metagenomics*/methods
Metagenome*
High-Throughput Nucleotide Sequencing/methods ; Benchmarking ; Sequence Analysis, DNA/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Wyświetlanie 21-40 z 38978

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