Temat: "Metagenomics" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: Complex European invasion history of Anoplophora glabripennis (Motschulsky): new insights in its population genomic differentiation using genotype-by-sequencing.
Autorzy:: Haeussermann I; Institute of Animal Science, Department of Livestock Population Genomics, Centre for Biodiversity and Integrative Taxonomy (KomBioTa), University of Hohenheim, Stuttgart, Germany. .
Hasselmann M; Institute of Animal Science, Department of Livestock Population Genomics, Centre for Biodiversity and Integrative Taxonomy (KomBioTa), University of Hohenheim, Stuttgart, Germany.; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2024 Feb 21; Vol. 14 (1), pp. 4263. Date of Electronic Publication: 2024 Feb 21.
Typ publikacji:: Journal Article
MeSH Terms:: Metagenomics*
Coleoptera*/genetics
Animals ; Phylogeny ; Europe ; Genotype
SCR Organism:: Anoplophora glabripennis

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Skocz do pozycji: 2.

Tytuł:: Population genomics of Agrotis segetum provide insights into the local adaptive evolution of agricultural pests.
Autorzy:: Wang P; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Gene Editing Technologies (Hainan), Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.; School of Life Sciences, Henan University, Kaifeng, 475004, China.; Shenzhen Research Institute of Henan university, Shenzhen, 518000, China.
Jin M; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Gene Editing Technologies (Hainan), Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
Wu C; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Gene Editing Technologies (Hainan), Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
Peng Y; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Gene Editing Technologies (Hainan), Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
He Y; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Gene Editing Technologies (Hainan), Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.; School of Life Sciences, Henan University, Kaifeng, 475004, China.; Shenzhen Research Institute of Henan university, Shenzhen, 518000, China.
Wang H; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Gene Editing Technologies (Hainan), Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
Xiao Y; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Gene Editing Technologies (Hainan), Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China. .; Pokaż więcej
Źródło:: BMC biology [BMC Biol] 2024 Feb 20; Vol. 22 (1), pp. 42. Date of Electronic Publication: 2024 Feb 20.
Typ publikacji:: Journal Article
MeSH Terms:: Metagenomics*
Moths*/genetics
Animals ; China

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Skocz do pozycji: 3.

Tytuł:: Unraveling metagenomics through long-read sequencing: a comprehensive review.
Autorzy:: Kim C; Center of Excellence in Genomics and Precision Dentistry, Department of Physiology, Faculty of Dentistry, Chulalongkorn University, Bangkok, Thailand.; Graduate Program in Bioinformatics and Computational Biology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand.
Pongpanich M; Department of Mathematics and Computer Science, Faculty of Science, Chulalongkorn University, Bangkok, Thailand.; Center of Excellence for Cancer and Inflammation, Chulalongkorn University, Bangkok, Thailand.
Porntaveetus T; Center of Excellence in Genomics and Precision Dentistry, Department of Physiology, Faculty of Dentistry, Chulalongkorn University, Bangkok, Thailand. .; Graduate Program in Geriatric and Special Patients Care, Faculty of Dentistry, Chulalongkorn University, Bangkok, Thailand. .; Pokaż więcej
Źródło:: Journal of translational medicine [J Transl Med] 2024 Jan 28; Vol. 22 (1), pp. 111. Date of Electronic Publication: 2024 Jan 28.
Typ publikacji:: Journal Article; Review
MeSH Terms:: High-Throughput Nucleotide Sequencing*/methods
Metagenomics*/methods
RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA/methods ; Genomics

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Skocz do pozycji: 4.

Tytuł:: Two decades of population genomics: will we ever agree on bacterial species?
Autorzy:: Hanage WP; Center for Communicable Disease Dynamics, Harvard T.H. Chan School of Public Health, Boston, MA, USA. .; Pokaż więcej
Źródło:: BMC biology [BMC Biol] 2024 Jan 26; Vol. 22 (1), pp. 20. Date of Electronic Publication: 2024 Jan 26.
Typ publikacji:: Letter
MeSH Terms:: Metagenomics*
Bacteria*/genetics
Genomics ; Genome, Bacterial

Opinia redakcyjna

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Skocz do pozycji: 5.

Tytuł:: Metagenomic analyses of 7000 to 5500 years old coprolites excavated from the Torihama shell-mound site in the Japanese archipelago.
Autorzy:: Nishimura L; Human Genetics Laboratory, National Institute of Genetics, Mishima, Shizuoka, Japan.; Department of Genetics, School of Life Science, The Graduate University for Advanced Studies (SOKENDAI), Mishima, Shizuoka, Japan.
Tanino A; Kitasato University Graduate School of Medical Sciences, Sagamihara, Kanagawa, Japan.
Ajimoto M; Wakasa History Museum, Obama, Fukui, Japan.
Katsumura T; Department of Anatomy, Kitasato University School of Medicine, Sagamihara, Kanagawa, Japan.
Ogawa M; Department of Anatomy, Kitasato University School of Medicine, Sagamihara, Kanagawa, Japan.
Koganebuchi K; Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo, Japan.
Waku D; Department of International Agricultural Development, Faculty of International Agriculture and Food Studies, Tokyo University of Agriculture, Tokyo, Japan.
Kumagai M; Research Center for Advanced Analysis, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan.
Sugimoto R; Department of Genetics, School of Life Science, The Graduate University for Advanced Studies (SOKENDAI), Mishima, Shizuoka, Japan.
Nakaoka H; Department of Cancer Genome Research, Sasaki Institute, Tokyo, Japan.
Oota H; Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo, Japan.
Inoue I; Human Genetics Laboratory, National Institute of Genetics, Mishima, Shizuoka, Japan.; Department of Genetics, School of Life Science, The Graduate University for Advanced Studies (SOKENDAI), Mishima, Shizuoka, Japan.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Jan 24; Vol. 19 (1), pp. e0295924. Date of Electronic Publication: 2024 Jan 24 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Metagenome*
Metagenomics*
Humans ; Japan ; Genomics ; Archaeology

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Skocz do pozycji: 6.

Tytuł:: Population genomic analyses suggest recent dispersal events of the pathogen Cercospora zeina into East and Southern African maize cropping systems.
Autorzy:: Welgemoed T; Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Private Bag X20, Hatfield 0028, South Africa.
Duong TA; Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Private Bag X20, Hatfield 0028, South Africa.
Barnes I; Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Private Bag X20, Hatfield 0028, South Africa.
Stukenbrock EH; Environmental Genomics, Christian-Albrechts University of Kiel, Am Botanischen Garten 1-11, Kiel 24118, Germany.; Max Planck Institute for Evolutionary Biology, August-Thienemann-Str. 2, Plön 24306, Germany.
Berger DK; Department of Plant and Soil Sciences, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Private Bag X20, Hatfield 0028, South Africa.; Pokaż więcej
Źródło:: G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Nov 01; Vol. 13 (11).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Zea mays*/genetics
Metagenomics*
Phylogeny ; South Africa
SCR Organism:: Cercospora zeina

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Skocz do pozycji: 7.

Tytuł:: Population genomics reveals how 5 ka of human occupancy led the Lima leaf-toed gecko (Phyllodactylus sentosus) to the brink of extinction.
Autorzy:: Arana A; Facultad de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos, Lima, Peru.
Esteves J; Facultad de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos, Lima, Peru.
Ramírez R; Facultad de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos, Lima, Peru.
Galetti PM Jr; Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, SP, 13565-905, Brazil.
Pérez Z J; Facultad de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos, Lima, Peru.
Ramirez JL; Facultad de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos, Lima, Peru. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2023 Oct 27; Vol. 13 (1), pp. 18465. Date of Electronic Publication: 2023 Oct 27.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Metagenomics*
Lizards*/genetics
Male ; Humans ; Animals ; Ecosystem ; Heterozygote ; Peru ; Genetic Variation ; Endangered Species

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Skocz do pozycji: 8.

Tytuł:: Shotgun metagenomics captures more microbial diversity than targeted 16S rRNA gene sequencing for field specimens and preserved museum specimens.
Autorzy:: Madison JD; Department of Biology, University of Massachusetts Boston, Boston, Massachusetts, United States of America.
LaBumbard BC; Department of Biology, University of Massachusetts Boston, Boston, Massachusetts, United States of America.
Woodhams DC; Department of Biology, University of Massachusetts Boston, Boston, Massachusetts, United States of America.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2023 Sep 19; Vol. 18 (9), pp. e0291540. Date of Electronic Publication: 2023 Sep 19 (Print Publication: 2023).
Typ publikacji:: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:: Metagenomics*
Museums*
Genes, rRNA ; RNA, Ribosomal, 16S/genetics ; Benchmarking

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Skocz do pozycji: 9.

Tytuł:: Assessing the recovery of Y chromosome microsatellites with population genomic data using Papio and Theropithecus genomes.
Autorzy:: Mutti G; Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area Delle Scienze, 11/a, 43124, Parma, Italy.; Barcelona Supercomputing Centre (BSC-CNS), Plaça Eusebi Güell, 1-3, 08034, Barcelona, Spain.; Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac, 10, 08028, Barcelona, Spain.
Oteo-Garcia G; Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area Delle Scienze, 11/a, 43124, Parma, Italy.
Caldon M; Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area Delle Scienze, 11/a, 43124, Parma, Italy.
da Silva MJF; BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, Vairão, Portugal.; Centro de Investigação Em Biodiversidade E Recursos Genéticos, CIBIOInBIO Laboratório AssociadoUniversidade Do Porto, Campus de Vairão, Vairão, Portugal.; ONE ‑ Organisms and Environment Group, School of Biosciences, Cardiff University, Sir Martin Evans Building, Cardiff, UK.
Minhós T; Centre for Research in Anthropology (CRIA-NOVA FCSH), Av. Forças Armadas, Edifício ISCTE, Sala 2w2, 1649-026, Lisboa, Portugal.; Anthropology Department, School of Social Sciences and Humanities, Universidade Nova de Lisboa (NOVA FCSH), Av. de Berna, 26-C, 1069-061, Lisboa, Portugal.
Cowlishaw G; Institute of Zoology, Zoological Society of London, Regent's Park, London, NW1 4RY, UK.
Gottelli D; Institute of Zoology, Zoological Society of London, Regent's Park, London, NW1 4RY, UK.
Huchard E; Institut Des Sciences de L'Evolution, CNRS, Universite de Montpellier, CC 065, 34095, Montpellier 05, France.
Carter A; Department of Anthropology, University College London, 14 Taviton Street, London, WC1H 0BW, UK.
Martinez FI; Escuela de Antropología, Facultad de Ciencias Sociales, Pontificia Universidad Católica de Chile, Santiago, Chile.
Raveane A; Human Technopole, Viale Rita Levi-Montalcini 1, 20157, Milan, Italy.
Capelli C; Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area Delle Scienze, 11/a, 43124, Parma, Italy. .; Department of Biology, University of Oxford, 11a Mansfield Road, Oxford, OX1 3SZ, UK. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2023 Aug 24; Vol. 13 (1), pp. 13839. Date of Electronic Publication: 2023 Aug 24.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Metagenomics*
Theropithecus*
Humans ; Male ; Animals ; Papio ; Macaca mulatta ; Microsatellite Repeats/genetics

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Skocz do pozycji: 10.

Tytuł:: Exceptional population genomic homogeneity in the black brittle star Ophiocomina nigra (Ophiuroidea, Echinodermata) along the Atlantic-Mediterranean coast.
Autorzy:: Leiva C; Departament de Biologia Evolutiva, Facultat de Biologia, Ecologia i Ciències Ambientals, Universitat de Barcelona (UB), Av. Diagonal 643, 08028, Barcelona, Spain. .; University of Guam Marine Laboratory, 303 University Drive, Mangilao, GU, 96923, USA. .
Pérez-Sorribes L; Departament de Biologia Evolutiva, Facultat de Biologia, Ecologia i Ciències Ambientals, Universitat de Barcelona (UB), Av. Diagonal 643, 08028, Barcelona, Spain.; Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona (UB), Barcelona, Spain.
González-Delgado S; Departamento de Biología Animal, Edafología y Geología, Facultad de Ciencias, Universidad de la Laguna, Canary Islands, Spain.
Ortiz S; Departament de Biologia Evolutiva, Facultat de Biologia, Ecologia i Ciències Ambientals, Universitat de Barcelona (UB), Av. Diagonal 643, 08028, Barcelona, Spain.
Wangensteen OS; Departament de Biologia Evolutiva, Facultat de Biologia, Ecologia i Ciències Ambientals, Universitat de Barcelona (UB), Av. Diagonal 643, 08028, Barcelona, Spain.; Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona (UB), Barcelona, Spain.
Pérez-Portela R; Departament de Biologia Evolutiva, Facultat de Biologia, Ecologia i Ciències Ambientals, Universitat de Barcelona (UB), Av. Diagonal 643, 08028, Barcelona, Spain. rocio_.; Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona (UB), Barcelona, Spain. rocio_.; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2023 Jul 31; Vol. 13 (1), pp. 12349. Date of Electronic Publication: 2023 Jul 31.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Echinodermata*/genetics
Metagenomics*
Humans ; Animals ; Genetic Drift ; Genomics ; Genetic Variation ; Genetics, Population

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Skocz do pozycji: 11.

Tytuł:: Pragmatic Considerations When Extracting DNA for Metagenomics Analyses of Clinical Samples.
Autorzy:: Neidhöfer C; Institute of Medical Microbiology, Immunology and Parasitology, University Hospital Bonn, Venusberg Campus 1, 53127 Bonn, Germany.
Bagniceva M; Institute of Medical Microbiology, Immunology and Parasitology, University Hospital Bonn, Venusberg Campus 1, 53127 Bonn, Germany.
Wetzig N; Institute for Functional Gene Analytics, Bonn-Rhein-Sieg University of Applied Sciences, 53757 Sankt Augustin, Germany.
Sieber MA; Institute for Functional Gene Analytics, Bonn-Rhein-Sieg University of Applied Sciences, 53757 Sankt Augustin, Germany.
Thiele R; Institute for Functional Gene Analytics, Bonn-Rhein-Sieg University of Applied Sciences, 53757 Sankt Augustin, Germany.
Parčina M; Institute of Medical Microbiology, Immunology and Parasitology, University Hospital Bonn, Venusberg Campus 1, 53127 Bonn, Germany.; Pokaż więcej
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2023 Jul 09; Vol. 24 (14). Date of Electronic Publication: 2023 Jul 09.
Typ publikacji:: Journal Article
MeSH Terms:: Metagenomics*/methods
DNA*
DNA, Bacterial/genetics ; Sequence Analysis, DNA/methods ; RNA, Ribosomal, 16S/genetics

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Skocz do pozycji: 12.

Tytuł:: Range-wide population genomics of common seadragons shows secondary contact over a former barrier and insights on illegal capture.
Autorzy:: Stiller J; Scripps Institution of Oceanography, University of California San Diego, La Jolla, 92093 , USA. .; Centre for Biodiversity Genomics, University of Copenhagen, 2100, Copenhagen, Denmark. .
Wilson NG; Scripps Institution of Oceanography, University of California San Diego, La Jolla, 92093 , USA.; Research & Collections, Western Australian Museum, Perth, Western Australia, 6106, Australia.; School of Biological Sciences, University of Western Australia, Perth, Western Australia, 6009, Australia.
Rouse GW; Scripps Institution of Oceanography, University of California San Diego, La Jolla, 92093 , USA. .; Pokaż więcej
Źródło:: BMC biology [BMC Biol] 2023 May 29; Vol. 21 (1), pp. 129. Date of Electronic Publication: 2023 May 29.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Metagenomics*
Smegmamorpha*
Humans ; Animals ; Phylogeny ; Biodiversity ; Australia ; Genetic Variation

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Skocz do pozycji: 13.

Tytuł:: RAPID prep : A Simple, Fast Protocol for RNA Metagenomic Sequencing of Clinical Samples.
Autorzy:: Tulloch RL; Centre for Virus Research, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia.; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.
Kim K; Centre for Virus Research, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia.; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.
Sikazwe C; PathWest Laboratory Medicine WA, Department of Microbiology, Nedlands, WA 6009, Australia.; School of Biomedical Sciences, The University of Western Australia, Crawley, WA 6009, Australia.
Michie A; PathWest Laboratory Medicine WA, Department of Microbiology, Nedlands, WA 6009, Australia.; School of Biomedical Sciences, The University of Western Australia, Crawley, WA 6009, Australia.
Burrell R; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.; Departments of Infectious Diseases and Microbiology, The Children's Hospital at Westmead, Westmead, NSW 2145, Australia.
Holmes EC; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.
Dwyer DE; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.; NSW Health Pathology Institute for Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.
Britton PN; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.; Departments of Infectious Diseases and Microbiology, The Children's Hospital at Westmead, Westmead, NSW 2145, Australia.
Kok J; NSW Health Pathology Institute for Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.
Eden JS; Centre for Virus Research, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia.; Sydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia.; Pokaż więcej
Źródło:: Viruses [Viruses] 2023 Apr 19; Vol. 15 (4). Date of Electronic Publication: 2023 Apr 19.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Metagenomics*/methods
High-Throughput Nucleotide Sequencing*/methods
Humans ; Metagenome ; Genomics ; RNA, Viral/genetics

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Skocz do pozycji: 14.

Tytuł:: Bioinformatic Tools for NGS-Based Metagenomics to Improve the Clinical Diagnosis of Emerging, Re-Emerging and New Viruses.
Autorzy:: Ibañez-Lligoña M; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Av. Monforte de Lemos, 3-5, 28029 Madrid, Spain.; Biochemistry and Molecular Biology Department, Universitat Autònoma de Barcelona (UAB), Campus de la UAB, Plaça Cívica, 08193 Bellaterra, Spain.
Colomer-Castell S; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Av. Monforte de Lemos, 3-5, 28029 Madrid, Spain.; Biochemistry and Molecular Biology Department, Universitat Autònoma de Barcelona (UAB), Campus de la UAB, Plaça Cívica, 08193 Bellaterra, Spain.
González-Sánchez A; Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.
Gregori J; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.
Campos C; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Av. Monforte de Lemos, 3-5, 28029 Madrid, Spain.; Biochemistry and Molecular Biology Department, Universitat Autònoma de Barcelona (UAB), Campus de la UAB, Plaça Cívica, 08193 Bellaterra, Spain.
Garcia-Cehic D; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Av. Monforte de Lemos, 3-5, 28029 Madrid, Spain.
Andrés C; Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.
Piñana M; Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.
Pumarola T; Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Microbiology Department, Universitat Autònoma de Barcelona (UAB), Campus de la UAB, Plaça Cívica, 08193 Bellaterra, Spain.
Rodríguez-Frias F; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Av. Monforte de Lemos, 3-5, 28029 Madrid, Spain.; Department of Basic Sciences, Universitat Internacional de Catalunya, Sant Cugat del Vallès, 08195 Barcelona, Spain.
Antón A; Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Microbiology Department, Universitat Autònoma de Barcelona (UAB), Campus de la UAB, Plaça Cívica, 08193 Bellaterra, Spain.
Quer J; Liver Diseases-Viral Hepatitis, Liver Unit, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Hospital Universitari, Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Av. Monforte de Lemos, 3-5, 28029 Madrid, Spain.; Biochemistry and Molecular Biology Department, Universitat Autònoma de Barcelona (UAB), Campus de la UAB, Plaça Cívica, 08193 Bellaterra, Spain.; Pokaż więcej
Źródło:: Viruses [Viruses] 2023 Feb 20; Vol. 15 (2). Date of Electronic Publication: 2023 Feb 20.
Typ publikacji:: Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:: Metagenomics*
Viruses*/genetics
Antiviral Agents ; Computational Biology ; Pandemics

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Skocz do pozycji: 15.

Tytuł:: Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management.
Autorzy:: Ishizuka TK; Institute of Biology, State University of Campinas, Campinas, Brazil.; Corteva Agriscience, Mogi Mirim, São Paulo, Brazil.
Cordeiro EMG; Department of Entomology, University of São Paulo-ESALQ/USP, Piracicaba, Brazil.
Alves-Pereira A; Institute of Biology, State University of Campinas, Campinas, Brazil.
de Araújo Batista CE; Department of Genetics, University of São Paulo-ESALQ/USP, Piracicaba, Brazil.
Murúa MG; Instituto de Bioprospección y Fisiología Vegetal (INBIOFIV), CONICET-UNT, Tucumán, Argentina.
Pinheiro JB; Department of Genetics, University of São Paulo-ESALQ/USP, Piracicaba, Brazil.
Sethi A; Corteva Agriscience, Johnston, Iowa, United States of America.
Nagoshi RN; United States Department of Agriculture-Agricultural Research Service, Gainesville, Florida, United States of America.
Foresti J; Corteva Agriscience, Mogi Mirim, São Paulo, Brazil.
Zucchi MI; Institute of Biology, State University of Campinas, Campinas, Brazil.; Agência Paulista de Tecnologia dos Agronegócios, Pólo Regional Centro-Sul, Piracicaba, Brazil.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2023 Apr 18; Vol. 18 (4), pp. e0284587. Date of Electronic Publication: 2023 Apr 18 (Print Publication: 2023).
Typ publikacji:: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
MeSH Terms:: Metagenomics*
Pest Control*
Animals ; Spodoptera/genetics ; Genotype ; Brazil ; Zea mays/genetics

Czasopismo naukowe

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Skocz do pozycji: 16.

Tytuł:: The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection.
Autorzy:: Xu R; Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.; Center for the Ecology of Infectious Diseases, University of Georgia, Athens, Georgia, United States of America.
Rajeev S; Department of Biomedical and Diagnostic Sciences, College of Veterinary Medicine, University of Tennessee, Knoxville, Tennessee, United States of America.
Salvador LCM; Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.; Center for the Ecology of Infectious Diseases, University of Georgia, Athens, Georgia, United States of America.; Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2023 Apr 07; Vol. 18 (4), pp. e0284031. Date of Electronic Publication: 2023 Apr 07 (Print Publication: 2023).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:: Metagenomics*/methods
Microbiota*/genetics
Animals ; Mice ; Software ; Algorithms ; Metagenome ; Sequence Analysis, DNA/methods

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Skocz do pozycji: 17.

Tytuł:: Rhometa: Population recombination rate estimation from metagenomic read datasets.
Autorzy:: Krishnan S; Climate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.
DeMaere MZ; Australian Institute for Microbiology & Infection, University of Technology Sydney, Sydney, NSW, Australia.
Beck D; Centre for Health Technologies and the School of Biomedical Engineering, University of Technology Sydney, Sydney, NSW, Australia.
Ostrowski M; Climate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.
Seymour JR; Climate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.
Darling AE; Australian Institute for Microbiology & Infection, University of Technology Sydney, Sydney, NSW, Australia.; Illumina Australia Pty Ltd, Ultimo, NSW, Australia.; Pokaż więcej
Źródło:: PLoS genetics [PLoS Genet] 2023 Mar 27; Vol. 19 (3), pp. e1010683. Date of Electronic Publication: 2023 Mar 27 (Print Publication: 2023).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Metagenomics*/methods
Metagenome*/genetics
Sequence Analysis, DNA/methods ; Likelihood Functions ; High-Throughput Nucleotide Sequencing/methods ; Software ; Recombination, Genetic/genetics ; Algorithms

Czasopismo naukowe

na półce

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Skocz do pozycji: 18.

Tytuł:: Controlling taxa abundance improves metatranscriptomics differential analysis.
Autorzy:: Ji Z; Department of Biostatistics and Bioinformatics, Duke University, Durham, USA. .
Ma L; Department of Biostatistics and Bioinformatics, Duke University, Durham, USA. .; Department of Statistical Science, Duke University, Durham, USA. .; Pokaż więcej
Źródło:: BMC microbiology [BMC Microbiol] 2023 Mar 07; Vol. 23 (1), pp. 60. Date of Electronic Publication: 2023 Mar 07.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:: Metagenomics*
RNA*
Computer Simulation

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Skocz do pozycji: 19.

Tytuł:: Population genomics and subgenome evolution of the allotetraploid frog Xenopus laevis in southern Africa.
Autorzy:: Premachandra T; Department of Biology, McMaster University, Life Sciences Building Room 328, 1280 Main Street West, Hamilton, ON L8S4K1, Canada.
Cauret CMS; Department of Biology, McMaster University, Life Sciences Building Room 328, 1280 Main Street West, Hamilton, ON L8S4K1, Canada.; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.
Conradie W; Port Elizabeth Museum (Bayworld), P.O. Box 13147, Humewood, Gqeberha 6013, South Africa.; Department of Conservation Management, Natural Resource Science and Management Cluster, Faculty of Science, Nelson Mandela University, George Campus, George 6019, South Africa.
Measey J; Centre for Invasion Biology, Department of Botany and Zoology, Stellenbosch University, Stellenbosch 7602, South Africa.
Evans BJ; Department of Biology, McMaster University, Life Sciences Building Room 328, 1280 Main Street West, Hamilton, ON L8S4K1, Canada.; Pokaż więcej
Źródło:: G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Feb 09; Vol. 13 (2).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Metagenomics*
Genome*
Animals ; Xenopus laevis/genetics ; Genomics ; Africa, Southern ; Evolution, Molecular ; Phylogeny

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Skocz do pozycji: 20.

Tytuł:: Metagenomics in infectious disease diagnostics: Toward best-use practices to optimize actionable results.
Autorzy:: Parrish NF; Section of Surgical Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, USA.; RIKEN Center for Integrative Medical Sciences, RIKEN Yokohama Institute, Yokohama, Japan.
Gaston DC; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.; Pokaż więcej
Źródło:: Transplant infectious disease : an official journal of the Transplantation Society [Transpl Infect Dis] 2023 Feb; Vol. 25 (1), pp. e13959. Date of Electronic Publication: 2022 Dec 26.
Typ publikacji:: Editorial
MeSH Terms:: Metagenomics*/methods
Communicable Diseases*
Humans ; High-Throughput Nucleotide Sequencing/methods ; Sensitivity and Specificity

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