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Wyszukujesz frazę ""Models, Molecular"" wg kryterium: Temat


Tytuł:
Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
Autorzy:
Sun Z; Verna and Marrs McLean Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, Houston, Texas, USA.
Lin H; Verna and Marrs McLean Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, Houston, Texas, USA.
Hu L; Verna and Marrs McLean Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, Houston, Texas, USA.
Neetu N; Verna and Marrs McLean Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, Houston, Texas, USA.
Sankaran B; Department of Molecular Biophysics and Integrated Bioimaging, Berkeley Center for Structural Biology, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Wang J; Verna and Marrs McLean Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, Houston, Texas, USA.
Prasad BVV; Verna and Marrs McLean Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, Houston, Texas, USA.
Palzkill T; Verna and Marrs McLean Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine, Houston, Texas, USA. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2024 Jan; Vol. 300 (1), pp. 105493. Date of Electronic Publication: 2023 Nov 23.
Typ publikacji:
Journal Article
MeSH Terms:
Ceftazidime*/pharmacology
Drug Resistance, Bacterial*/genetics
Models, Molecular*
Humans ; Amino Acids/genetics ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/therapeutic use ; Bacterial Proteins/chemistry ; Bacterial Proteins/genetics ; Bacterial Proteins/metabolism ; beta-Lactamases/chemistry ; beta-Lactamases/genetics ; beta-Lactamases/metabolism ; Klebsiella Infections/drug therapy ; Klebsiella Infections/microbiology ; Klebsiella pneumoniae/drug effects ; Klebsiella pneumoniae/genetics ; Crystallography, X-Ray ; Catalytic Domain/genetics ; Protein Structure, Tertiary
Czasopismo naukowe
Tytuł:
Structure and biochemical characterization of l-2-hydroxyglutarate dehydrogenase and its role in the pathogenesis of l-2-hydroxyglutaric aciduria.
Autorzy:
Yang J; State Key Laboratory of Molecular Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China.
Chen X; State Key Laboratory of Molecular Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China.
Jin S; State Key Laboratory of Molecular Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China.
Ding J; State Key Laboratory of Molecular Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China; School of Life Science and Technology, ShanghaiTech University, Shanghai, China. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2024 Jan; Vol. 300 (1), pp. 105491. Date of Electronic Publication: 2023 Nov 22.
Typ publikacji:
Journal Article
MeSH Terms:
Alcohol Oxidoreductases*/chemistry
Alcohol Oxidoreductases*/metabolism
Brain Diseases, Metabolic, Inborn*/enzymology
Brain Diseases, Metabolic, Inborn*/genetics
Brain Diseases, Metabolic, Inborn*/physiopathology
Drosophila melanogaster*/enzymology
Models, Molecular*
Animals ; Humans ; Glutarates/metabolism ; Mutation ; Catalytic Domain/genetics ; Substrate Specificity/genetics ; Protein Structure, Tertiary ; Recombinant Proteins/chemistry ; Recombinant Proteins/genetics ; Recombinant Proteins/metabolism
SCR Disease Name:
2-Hydroxyglutaricaciduria
Czasopismo naukowe
Tytuł:
Unusual 1-3 peptidoglycan cross-links in Acetobacteraceae are made by L,D-transpeptidases with a catalytic domain distantly related to YkuD domains.
Autorzy:
Alamán-Zárate MG; Molecular Microbiology, Biochemistry to Disease, School of Biosciences, University of Sheffield, Sheffield, UK.
Rady BJ; Molecular Microbiology, Biochemistry to Disease, School of Biosciences, University of Sheffield, Sheffield, UK.
Evans CA; Department of Chemical and Biological Engineering, ChELSI Institute, University of Sheffield, Sheffield, UK.
Pian B; Department of Biological and Environmental Engineering, Cornell University, Ithaca, USA.
Greetham D; Molecular Microbiology, Biochemistry to Disease, School of Biosciences, University of Sheffield, Sheffield, UK.
Marecos-Ortiz S; Department of Biological and Environmental Engineering, Cornell University, Ithaca, USA.
Dickman MJ; Department of Chemical and Biological Engineering, ChELSI Institute, University of Sheffield, Sheffield, UK.
Lidbury IDEA; Molecular Microbiology, Biochemistry to Disease, School of Biosciences, University of Sheffield, Sheffield, UK.
Lovering AL; School of Biosciences, University of Birmingham, Birmingham, UK.
Barstow BM; Department of Biological and Environmental Engineering, Cornell University, Ithaca, USA.
Mesnage S; Molecular Microbiology, Biochemistry to Disease, School of Biosciences, University of Sheffield, Sheffield, UK. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2024 Jan; Vol. 300 (1), pp. 105494. Date of Electronic Publication: 2023 Nov 23.
Typ publikacji:
Journal Article
MeSH Terms:
Bacterial Proteins*/chemistry
Bacterial Proteins*/genetics
Bacterial Proteins*/metabolism
Peptidoglycan*/chemistry
Peptidoglycan*/genetics
Peptidoglycan*/metabolism
Peptidyl Transferases*/chemistry
Peptidyl Transferases*/genetics
Peptidyl Transferases*/metabolism
Gluconobacter oxydans*/enzymology
Gluconobacter oxydans*/genetics
Models, Molecular*
Amino Acids/genetics ; Catalytic Domain/genetics ; Software ; Computational Biology ; Genetic Complementation Test ; Protein Structure, Tertiary
Czasopismo naukowe
Tytuł:
Mapping interactions of calmodulin and neuronal NO synthase by crosslinking and mass spectrometry.
Autorzy:
Felker D; Department of Pharmacology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Lee K; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, California, USA; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, California, USA.
Pospiech TH; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, California, USA; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, California, USA.
Morishima Y; Department of Pharmacology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Zhang H; Department of Pharmacology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Lau M; Department of Pharmacology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Southworth DR; Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, California, USA; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, California, USA.
Osawa Y; Department of Pharmacology, University of Michigan Medical School, Ann Arbor, Michigan, USA. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2024 Jan; Vol. 300 (1), pp. 105464. Date of Electronic Publication: 2023 Nov 16.
Typ publikacji:
Journal Article
MeSH Terms:
Calmodulin*/metabolism
Nitric Oxide Synthase Type I*/metabolism
Cross-Linking Reagents*/chemistry
Models, Molecular*
Heme/metabolism ; Mass Spectrometry ; Oxygenases/metabolism ; Calcium/chemistry ; Protein Structure, Quaternary ; Protein Binding ; Cryoelectron Microscopy
Czasopismo naukowe
Tytuł:
Assessment of protein-ligand complexes in CASP15.
Autorzy:
Robin X; Biozentrum, University of Basel, Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, Basel, Switzerland.
Studer G; Biozentrum, University of Basel, Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, Basel, Switzerland.
Durairaj J; Biozentrum, University of Basel, Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, Basel, Switzerland.
Eberhardt J; Biozentrum, University of Basel, Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, Basel, Switzerland.
Schwede T; Biozentrum, University of Basel, Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, Basel, Switzerland.
Walters WP; Relay Therapeutics, Cambridge, Massachusetts, USA.
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Źródło:
Proteins [Proteins] 2023 Dec; Vol. 91 (12), pp. 1811-1821. Date of Electronic Publication: 2023 Oct 05.
Typ publikacji:
Journal Article
MeSH Terms:
Models, Molecular*
Humans ; Ligands ; Binding Sites ; Ions ; Protein Binding ; Crystallography, X-Ray
Czasopismo naukowe
Tytuł:
Identification of the functional PD-L1 interface region responsible for PD-1 binding and initiation of PD-1 signaling.
Autorzy:
Carter R; Center for Applied Proteomics and Molecular Medicine, George Mason University, Fairfax, Virginia, USA. Electronic address: .
Alanazi F; Center for Applied Proteomics and Molecular Medicine, George Mason University, Fairfax, Virginia, USA.
Sharp A; Program in Genetics, Bioinformatics, and Computational Biology, Virginia Tech, Blacksburg, Virginia, USA.
Roman J; Center for Applied Proteomics and Molecular Medicine, George Mason University, Fairfax, Virginia, USA.
Luchini A; Center for Applied Proteomics and Molecular Medicine, George Mason University, Fairfax, Virginia, USA.
Liotta L; Center for Applied Proteomics and Molecular Medicine, George Mason University, Fairfax, Virginia, USA.
Paige M; Department of Chemistry and Biochemistry, George Mason University, Fairfax, Virginia, USA.
Brown AM; Program in Genetics, Bioinformatics, and Computational Biology, Virginia Tech, Blacksburg, Virginia, USA; Department of Biochemistry, Virginia Tech, Blacksburg, Virginia, USA; Data Services, University Libraries, Virginia Tech, Blacksburg, Virginia, USA.
Haymond A; Center for Applied Proteomics and Molecular Medicine, George Mason University, Fairfax, Virginia, USA.
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2023 Dec; Vol. 299 (12), pp. 105353. Date of Electronic Publication: 2023 Oct 17.
Typ publikacji:
Journal Article
MeSH Terms:
B7-H1 Antigen*/chemistry
B7-H1 Antigen*/genetics
B7-H1 Antigen*/metabolism
Neoplasms*/drug therapy
Signal Transduction*
Models, Molecular*
Humans ; Immunotherapy ; Leukocytes, Mononuclear/metabolism ; Peptides/pharmacology ; Programmed Cell Death 1 Receptor/agonists ; Programmed Cell Death 1 Receptor/chemistry ; Programmed Cell Death 1 Receptor/metabolism ; Protein Binding ; Mutation ; Protein Structure, Quaternary ; Cell Line, Tumor ; Immunity/drug effects
Czasopismo naukowe
Tytuł:
Structural insights of the p97/VCP AAA+ ATPase: How adapter interactions coordinate diverse cellular functionality.
Autorzy:
Braxton JR; Graduate Program in Chemistry and Chemical Biology, University of California, San Francisco, San Francisco, California, USA; Department of Biochemistry and Biophysics and Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, California, USA.
Southworth DR; Department of Biochemistry and Biophysics and Institute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, California, USA. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2023 Nov; Vol. 299 (11), pp. 105182. Date of Electronic Publication: 2023 Aug 22.
Typ publikacji:
Journal Article; Review; Research Support, N.I.H., Extramural
MeSH Terms:
Adaptor Proteins, Signal Transducing*/chemistry
Adaptor Proteins, Signal Transducing*/metabolism
Valosin Containing Protein*/chemistry
Valosin Containing Protein*/metabolism
Models, Molecular*
Humans ; Protein Folding ; Protein Domains ; Protein Structure, Quaternary
Czasopismo naukowe
Tytuł:
The effect of linker conformation on performance and stability of a two-domain lytic polysaccharide monooxygenase.
Autorzy:
Forsberg Z; Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway. Electronic address: .
Stepnov AA; Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway.
Tesei G; Structural Biology and NMR Laboratory, Department of Biology, Linderstrøm-Lang Centre for Protein Science, University of Copenhagen, Copenhagen, Denmark.
Wang Y; Structural Biology and NMR Laboratory, Department of Biology, Linderstrøm-Lang Centre for Protein Science, University of Copenhagen, Copenhagen, Denmark; College of Life Sciences, Zhejiang University, Hangzhou, China.
Buchinger E; Vectron Biosolutions AS, Trondheim, Norway; Department of Biotechnology and Food Science, NTNU Norwegian University of Science and Technology, Trondheim, Norway.
Kristiansen SK; Department of Biotechnology and Food Science, NTNU Norwegian University of Science and Technology, Trondheim, Norway.
Aachmann FL; Department of Biotechnology and Food Science, NTNU Norwegian University of Science and Technology, Trondheim, Norway.
Arleth L; X-ray and Neutron Science, Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark.
Eijsink VGH; Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway.
Lindorff-Larsen K; Structural Biology and NMR Laboratory, Department of Biology, Linderstrøm-Lang Centre for Protein Science, University of Copenhagen, Copenhagen, Denmark.
Courtade G; Department of Biotechnology and Food Science, NTNU Norwegian University of Science and Technology, Trondheim, Norway. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2023 Nov; Vol. 299 (11), pp. 105262. Date of Electronic Publication: 2023 Sep 19.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Mixed Function Oxygenases*/chemistry
Mixed Function Oxygenases*/metabolism
Fungal Proteins*/chemistry
Fungal Proteins*/metabolism
Models, Molecular*
Protein Folding*
Catalytic Domain ; Cellulose/metabolism ; Polysaccharides/metabolism ; Serine ; Protein Stability ; Enzyme Activation ; Molecular Docking Simulation ; Streptomyces/enzymology ; Protein Structure, Tertiary
Czasopismo naukowe
Tytuł:
Ubiquitin-specific protease 11 structure in complex with an engineered substrate mimetic reveals a molecular feature for deubiquitination selectivity.
Autorzy:
Maurer SK; Biodiscovery Institute, School of Pharmacy, University of Nottingham, Nottingham, United Kingdom.
Mayer MP; Biodiscovery Institute, School of Pharmacy, University of Nottingham, Nottingham, United Kingdom.
Ward SJ; Biodiscovery Institute, School of Pharmacy, University of Nottingham, Nottingham, United Kingdom.
Boudjema S; Biodiscovery Institute, School of Pharmacy, University of Nottingham, Nottingham, United Kingdom.
Halawa M; Biodiscovery Institute, School of Pharmacy, University of Nottingham, Nottingham, United Kingdom.
Zhang J; Biodiscovery Institute, School of Pharmacy, University of Nottingham, Nottingham, United Kingdom.
Caulton SG; Biodiscovery Institute, School of Pharmacy, University of Nottingham, Nottingham, United Kingdom.
Emsley J; Biodiscovery Institute, School of Pharmacy, University of Nottingham, Nottingham, United Kingdom.
Dreveny I; Biodiscovery Institute, School of Pharmacy, University of Nottingham, Nottingham, United Kingdom. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2023 Nov; Vol. 299 (11), pp. 105300. Date of Electronic Publication: 2023 Sep 28.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Ubiquitin-Specific Proteases*/chemistry
Ubiquitin-Specific Proteases*/metabolism
Models, Molecular*
Binding Sites ; Humans ; Ubiquitination/genetics ; Protein Structure, Tertiary ; Crystallography, X-Ray ; Substrate Specificity/genetics
Czasopismo naukowe
Tytuł:
Structural insight into G-protein chaperone-mediated maturation of a bacterial adenosylcobalamin-dependent mutase.
Autorzy:
Vaccaro FA; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Faber DA; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Andree GA; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Born DA; Graduate Program in Biophysics, Harvard University, Cambridge, Massachusetts, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Kang G; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Fonseca DR; Amgen Scholar Program, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Jost M; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Drennan CL; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA; Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2023 Sep; Vol. 299 (9), pp. 105109. Date of Electronic Publication: 2023 Jul 28.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Cobamides*/metabolism
Methylmalonyl-CoA Mutase*/chemistry
Methylmalonyl-CoA Mutase*/metabolism
Molecular Chaperones*/metabolism
Models, Molecular*
GTP-Binding Proteins/chemistry ; GTP-Binding Proteins/metabolism ; Guanosine Triphosphate/metabolism ; Isomerases/chemistry ; Isomerases/metabolism ; Protein Subunits/chemistry ; Protein Subunits/metabolism ; Cupriavidus/chemistry ; Cupriavidus/enzymology ; Protein Structure, Quaternary ; Catalytic Domain ; Coenzymes/metabolism
Czasopismo naukowe
Tytuł:
N-acetylmuramic acid recognition by MurK kinase from the MurNAc auxotrophic oral pathogen Tannerella forsythia.
Autorzy:
Stasiak AC; Interfaculty Institute of Biochemistry, University of Tuebingen, Tuebingen, Germany.
Gogler K; Interfaculty Institute of Biochemistry, University of Tuebingen, Tuebingen, Germany.
Borisova M; Interfaculty Institute of Microbiology and Infection Medicine, Organismic Interactions/Glycobiology, University of Tuebingen, Tuebingen, Germany.
Fink P; Interfaculty Institute of Biochemistry, University of Tuebingen, Tuebingen, Germany.
Mayer C; Interfaculty Institute of Microbiology and Infection Medicine, Organismic Interactions/Glycobiology, University of Tuebingen, Tuebingen, Germany.
Stehle T; Interfaculty Institute of Biochemistry, University of Tuebingen, Tuebingen, Germany.
Zocher G; Interfaculty Institute of Biochemistry, University of Tuebingen, Tuebingen, Germany. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2023 Sep; Vol. 299 (9), pp. 105076. Date of Electronic Publication: 2023 Jul 20.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Muramic Acids*/metabolism
Tannerella forsythia*/enzymology
Phosphotransferases*/chemistry
Phosphotransferases*/metabolism
Models, Molecular*
Peptidoglycan/metabolism ; Protein Structure, Tertiary ; Crystallography, X-Ray ; Catalytic Domain ; Enzyme Activation
Czasopismo naukowe
Tytuł:
SurfPB: A GPU-Accelerated Electrostatic Calculation and Visualization Tool for Biomolecules.
Autorzy:
Liao J; Biomolecular Physics and Modeling Group, School of Physics Huazhong University of Science and Technology, Wuhan 430074, Hubei, China.
Shu Z; Biomolecular Physics and Modeling Group, School of Physics Huazhong University of Science and Technology, Wuhan 430074, Hubei, China.
Gao J; Biomolecular Physics and Modeling Group, School of Physics Huazhong University of Science and Technology, Wuhan 430074, Hubei, China.
Wu M; Biomolecular Physics and Modeling Group, School of Physics Huazhong University of Science and Technology, Wuhan 430074, Hubei, China.
Chen C; Biomolecular Physics and Modeling Group, School of Physics Huazhong University of Science and Technology, Wuhan 430074, Hubei, China.
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Źródło:
Journal of chemical information and modeling [J Chem Inf Model] 2023 Aug 14; Vol. 63 (15), pp. 4490-4496. Date of Electronic Publication: 2023 Jul 27.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Models, Molecular*
Static Electricity ; Solvents/chemistry ; Entropy
Czasopismo naukowe
Tytuł:
Effector-dependent structural transformation of a crystalline framework with allosteric effects on molecular recognition ability.
Autorzy:
Hayashi R; Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.
Tashiro S; Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan. .
Asakura M; Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.
Mitsui S; Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.
Shionoya M; Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan. .
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Źródło:
Nature communications [Nat Commun] 2023 Aug 10; Vol. 14 (1), pp. 4490. Date of Electronic Publication: 2023 Aug 10.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Models, Molecular*
Allosteric Site ; Allosteric Regulation
Czasopismo naukowe
Tytuł:
Comparison of activity, structure, and dynamics of SF-1 and LRH-1 complexed with small molecule modulators.
Autorzy:
Cato ML; Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia, USA.
D'Agostino EH; Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia, USA.
Spurlin RM; Department of Chemistry, Emory University, Atlanta, Georgia, USA.
Flynn AR; Department of Chemistry, Emory University, Atlanta, Georgia, USA.
Cornelison JL; Department of Chemistry, Emory University, Atlanta, Georgia, USA.
Johnson AM; Department of Chemistry, Emory University, Atlanta, Georgia, USA.
Fujita RA; Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia, USA.
Abraham SM; Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia, USA.
Jui NT; Department of Chemistry, Emory University, Atlanta, Georgia, USA.
Ortlund EA; Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia, USA. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2023 Aug; Vol. 299 (8), pp. 104921. Date of Electronic Publication: 2023 Jun 14.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Molecular Dynamics Simulation*
Receptors, Cytoplasmic and Nuclear*/agonists
Receptors, Cytoplasmic and Nuclear*/chemistry
Small Molecule Libraries*/chemistry
Steroidogenic Factor 1*/agonists
Steroidogenic Factor 1*/chemistry
Models, Molecular*
Ligands ; Phospholipids/chemistry ; Humans ; Crystallography, X-Ray
Czasopismo naukowe
Tytuł:
Membrane structure and internalization dynamics of human Flower isoforms hFWE3 and hFWE4 indicate a conserved endocytic role for hFWE4.
Autorzy:
Rudd JC; Department of Biomedical Sciences, Creighton University School of Medicine, Omaha, Nebraska, USA.
Maity S; Department of Biomedical Sciences, Creighton University School of Medicine, Omaha, Nebraska, USA.
Grunkemeyer JA; Department of Biomedical Sciences, Creighton University School of Medicine, Omaha, Nebraska, USA.
Snyder JC; Department of Surgery, Duke University Medical Center, Durham, North Carolina, USA; Department of Cell Biology, Duke University Medical Center, Durham, North Carolina, USA.
Lovas S; Department of Biomedical Sciences, Creighton University School of Medicine, Omaha, Nebraska, USA.
Hansen LA; Department of Biomedical Sciences, Creighton University School of Medicine, Omaha, Nebraska, USA. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2023 Aug; Vol. 299 (8), pp. 104945. Date of Electronic Publication: 2023 Jun 20.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Endoplasmic Reticulum*/metabolism
Models, Molecular*
Humans ; Cell Membrane/metabolism ; Cell Membrane/ultrastructure ; Endocytosis ; Membrane Proteins/metabolism ; Membrane Proteins/ultrastructure ; Protein Isoforms/genetics ; Protein Isoforms/metabolism ; Protein Isoforms/ultrastructure ; Cytoplasmic Vesicles/metabolism ; Cytoplasmic Vesicles/ultrastructure ; Molecular Dynamics Simulation ; Protein Structure, Tertiary ; Clathrin/metabolism ; HEK293 Cells
Czasopismo naukowe
Tytuł:
Assembly dynamics and structure of an aegerolysin, ostreolysin A6.
Autorzy:
Yilmaz N; Lipid Biology Laboratory, RIKEN, 2-1, Wako, Saitama, Japan; NanoLSI, Kanazawa University, Kakuma-machi, Kanazawa, Ishikawa, Japan. Electronic address: .
Panevska A; Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Tomishige N; Lipid Biology Laboratory, RIKEN, 2-1, Wako, Saitama, Japan; Laboratoire de Bioimagerie et Pathologies, UMR 7021 CNRS, Université de Strasbourg, Faculté de Pharmacie, Illkirch, France.
Richert L; Laboratoire de Bioimagerie et Pathologies, UMR 7021 CNRS, Université de Strasbourg, Faculté de Pharmacie, Illkirch, France.
Mély Y; Laboratoire de Bioimagerie et Pathologies, UMR 7021 CNRS, Université de Strasbourg, Faculté de Pharmacie, Illkirch, France.
Sepčić K; Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Greimel P; Lipid Biology Laboratory, RIKEN, 2-1, Wako, Saitama, Japan. Electronic address: .
Kobayashi T; Lipid Biology Laboratory, RIKEN, 2-1, Wako, Saitama, Japan; Laboratoire de Bioimagerie et Pathologies, UMR 7021 CNRS, Université de Strasbourg, Faculté de Pharmacie, Illkirch, France. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2023 Aug; Vol. 299 (8), pp. 104940. Date of Electronic Publication: 2023 Jun 19.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Fungal Proteins*/chemistry
Fungal Proteins*/metabolism
Fungal Proteins*/ultrastructure
Hemolysin Proteins*/chemistry
Hemolysin Proteins*/metabolism
Hemolysin Proteins*/ultrastructure
Models, Molecular*
Membrane Proteins ; Crystallization ; Microscopy, Atomic Force ; Protein Multimerization ; Protein Structure, Tertiary
Czasopismo naukowe
Tytuł:
Protein oxidation increases SAMHD1 binding ssDNA via its regulatory site.
Autorzy:
Simermeyer TL; Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC, USA.
Batalis S; Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC, USA.
Rogers LC; Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC, USA.
Zalesak OJ; Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC, USA.
Hollis T; Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Jul 21; Vol. 51 (13), pp. 7014-7024.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
SAM Domain and HD Domain-Containing Protein 1*/chemistry
SAM Domain and HD Domain-Containing Protein 1*/metabolism
Models, Molecular*
Oxidation-Reduction ; Protein Binding ; DNA, Single-Stranded/metabolism ; Protein Structure, Tertiary ; PC-3 Cells ; Humans
Czasopismo naukowe
Tytuł:
Unusual coordination mode for 1,3-diphosphete ligands towards a Cr-Cr quintuple bond complex.
Autorzy:
Elsayed Moussa M; Department of Inorganic Chemistry, University of Regensburg, D93040, Regensburg, Germany. .
Rummel EM; Department of Inorganic Chemistry, University of Regensburg, D93040, Regensburg, Germany. .
Balázs G; Department of Inorganic Chemistry, University of Regensburg, D93040, Regensburg, Germany. .
Riesinger C; Department of Inorganic Chemistry, University of Regensburg, D93040, Regensburg, Germany. .
Noor A; Department of Inorganic Chemistry, University of Bayreuth, D95440, Bayreuth, Germany.; Department of Basic Sciences, Preparatory Year Deanship, King Faisal University, 31982 Al-Hassa, Saudi Arabia.
Kempe R; Department of Inorganic Chemistry, University of Bayreuth, D95440, Bayreuth, Germany.
Scheer M; Department of Inorganic Chemistry, University of Regensburg, D93040, Regensburg, Germany. .
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Źródło:
Chemical communications (Cambridge, England) [Chem Commun (Camb)] 2023 Jul 06; Vol. 59 (55), pp. 8588-8591. Date of Electronic Publication: 2023 Jul 06.
Typ publikacji:
Journal Article
MeSH Terms:
Models, Molecular*
Ligands
Czasopismo naukowe
Tytuł:
PAE viewer: a webserver for the interactive visualization of the predicted aligned error for multimer structure predictions and crosslinks.
Autorzy:
Elfmann C; Department of General Microbiology, Georg-August-University Göttingen, GZMB, 37077 Göttingen, Germany.
Stülke J; Department of General Microbiology, Georg-August-University Göttingen, GZMB, 37077 Göttingen, Germany.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Jul 05; Vol. 51 (W1), pp. W404-W410.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Computational Chemistry*/methods
Models, Molecular*
Proteins*/chemistry
Software*
Databases, Protein ; Internet ; Protein Structure, Tertiary ; Reproducibility of Results ; User-Computer Interface
Czasopismo naukowe
Tytuł:
Structural insights into the action mechanisms of artificial electron acceptors in photosystem II.
Autorzy:
Kamada S; Faculty of Science, Okayama University, Okayama, Japan.
Nakajima Y; Research Institute for Interdisciplinary Science and Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan. Electronic address: .
Shen JR; Research Institute for Interdisciplinary Science and Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2023 Jul; Vol. 299 (7), pp. 104839. Date of Electronic Publication: 2023 May 19.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Electrons*
Oxidants*/chemistry
Photosystem II Protein Complex*/chemistry
Photosystem II Protein Complex*/metabolism
Models, Molecular*
Benzoquinones/chemistry ; Electron Transport ; Oxygen/metabolism ; Plastoquinone/chemistry ; Plastoquinone/metabolism ; Quinones/chemistry ; Quinones/metabolism ; Water/chemistry ; Binding Sites ; Protein Structure, Tertiary ; X-Ray Diffraction ; Cyanobacteria/chemistry ; Cyanobacteria/physiology
Czasopismo naukowe

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