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Wyszukujesz frazę ""Models, Molecular"" wg kryterium: Temat


Tytuł :
AI-driven prediction of SARS-CoV-2 variant binding trends from atomistic simulations.
Autorzy :
Capponi S; IBM Almaden Research Center, 650 Harry Rd, San Jose, CA, 95120, USA.; Center for Cellular Construction, San Francisco, CA, 94158, USA.
Wang S; IBM Almaden Research Center, 650 Harry Rd, San Jose, CA, 95120, USA.; Center for Cellular Construction, San Francisco, CA, 94158, USA.
Navarro EJ; IBM Almaden Research Center, 650 Harry Rd, San Jose, CA, 95120, USA.; Center for Cellular Construction, San Francisco, CA, 94158, USA.; Graduate Program in Biophysics, University of California, San Francisco, San Francisco, CA, 94158, USA.
Bianco S; IBM Almaden Research Center, 650 Harry Rd, San Jose, CA, 95120, USA. .; Center for Cellular Construction, San Francisco, CA, 94158, USA. .
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Źródło :
The European physical journal. E, Soft matter [Eur Phys J E Soft Matter] 2021 Oct 06; Vol. 44 (10), pp. 123. Date of Electronic Publication: 2021 Oct 06.
Typ publikacji :
Journal Article
MeSH Terms :
Artificial Intelligence*
Models, Molecular*
SARS-CoV-2/*metabolism
Angiotensin-Converting Enzyme 2/chemistry ; Angiotensin-Converting Enzyme 2/metabolism ; Humans ; Protein Conformation
SCR Organism :
SARS-CoV-2 variants
Czasopismo naukowe
Tytuł :
Critical issues in molecular recognition: the enzyme-substrate association.
Autorzy :
Ciferri A; Duke University, Chemistry Department, Durham NC, USA. .
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Źródło :
Soft matter [Soft Matter] 2021 Oct 06; Vol. 17 (38), pp. 8585-8589. Date of Electronic Publication: 2021 Oct 06.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Enzymes*/metabolism
Models, Molecular*
Models, Structural*
Electronics ; Molecular Conformation
Czasopismo naukowe
Tytuł :
Theoretical modeling of structure-toxicity relationship of cyanides.
Autorzy :
Molski M; Quantum Chemistry Department, Faculty of Chemistry, Adam Mickiewicz University of Poznań, ul. Uniwersytetu Poznańskiego 8, 61-614 Poznań, Poland. Electronic address: .
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Źródło :
Toxicology letters [Toxicol Lett] 2021 Oct 01; Vol. 349, pp. 30-39. Date of Electronic Publication: 2021 Jun 03.
Typ publikacji :
Comparative Study; Journal Article
MeSH Terms :
Models, Molecular*
Toxicity Tests*
Cyanides/*toxicity
Animals ; Cyanides/chemistry ; Dose-Response Relationship, Drug ; Humans ; Lethal Dose 50 ; Molecular Structure ; No-Observed-Adverse-Effect Level ; Risk Assessment ; Structure-Activity Relationship
Czasopismo naukowe
Tytuł :
Influence of molecular rebinding on the reaction rate of complex formation.
Autorzy :
Kalwarczyk T; Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland. .
Bielec K; Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland. .
Burdzy K; Department of Mathematics, Box 354350, University of Washington, Seattle, WA 98195, USA.
Holyst R; Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland. .
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Źródło :
Physical chemistry chemical physics : PCCP [Phys Chem Chem Phys] 2021 Sep 15; Vol. 23 (35), pp. 19343-19351. Date of Electronic Publication: 2021 Sep 15.
Typ publikacji :
Journal Article
MeSH Terms :
Models, Molecular*
Arylsulfonates/chemistry ; Diffusion ; Kinetics ; Monte Carlo Method ; Proteins/chemistry ; Proteins/metabolism ; Protons
Czasopismo naukowe
Tytuł :
Experimental and theoretical studies on glucose conversion in ethanol solution to 5-ethoxymethylfurfural and ethyl levulinate catalyzed by a Brønsted acid.
Autorzy :
Wang S; College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China. .
Chen Y; College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China. .
Jia Y; College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China. .
Xu G; College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China. .
Chang C; School of Chemical Engineering and Energy, Zhengzhou University, Zhengzhou 450001, China.; Henan Key Laboratory of Green Manufacturing of Biobased Chemicals, Puyang 457000, China.
Guo Q; College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China. .
Tao H; College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China. .
Zou C; College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China. .
Li K; College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China. .
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Źródło :
Physical chemistry chemical physics : PCCP [Phys Chem Chem Phys] 2021 Sep 15; Vol. 23 (35), pp. 19729-19739. Date of Electronic Publication: 2021 Sep 15.
Typ publikacji :
Journal Article
MeSH Terms :
Models, Molecular*
Ethanol/*chemistry
Furaldehyde/*analogs & derivatives
Glucose/*chemistry
Sulfuric Acids/*chemistry
Biofuels ; Catalysis ; Density Functional Theory ; Furaldehyde/chemistry ; Levulinic Acids/chemistry ; Thermodynamics
Czasopismo naukowe
Tytuł :
Nonparametric Analysis of Nonequilibrium Simulations.
Autorzy :
Krivov SV; Astbury Center for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, U.K.
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Źródło :
Journal of chemical theory and computation [J Chem Theory Comput] 2021 Sep 14; Vol. 17 (9), pp. 5466-5481. Date of Electronic Publication: 2021 Aug 31.
Typ publikacji :
Journal Article
MeSH Terms :
Models, Molecular*
Statistics, Nonparametric*
Proteins/*chemistry
Algorithms ; Protein Folding ; Reproducibility of Results
Czasopismo naukowe
Tytuł :
Molecular docking and dynamic studies of a potential therapeutic target inhibiting glyoxalase system: Metabolic action of the 3, 3 '- [3- (5-chloro-2-hydroxyphenyl) -3-oxopropane-1, 1-diyl] - Bis-4-hydroxycoumarin leads overexpression of the intracellular level of methylglyoxal and induction of a pro-apoptotic phenomenon in a hepatocellular carcinoma model.
Autorzy :
Taïbi N; Centre de Recherche Scientifique et Technique en Analyses Physico-chimiques CRAPC, BP 384, Bou-Ismail, 42004, Tipaza, Algeria; Université des Sciences et de La Technologie Houari Boumediene (USTHB), Faculté des Sciences Biologiques (FSB), Laboratoire de Recherche sur Les Zones Arides, (LRZA), BP 32 El Alia 16111, Bab Ezzouar, 16111, Algeria. Electronic address: .
Al-Balas QA; Departments of Medicinal Chemistry and Pharmacognosy, Faculty of Pharmacy, Jordan University of Science and Technology, Irbid, Jordan. Electronic address: .
Bekari N; USTHB, Faculty of Biological Sciences, Laboratory of Cellular and Molecular Biology, 16111, BP32, El Alia, Bab Ezzouar, Algiers, Algeria. Electronic address: .
Talhi O; Centre de Recherche Scientifique et Technique en Analyses Physico-chimiques CRAPC, BP 384, Bou-Ismail, 42004, Tipaza, Algeria; QOPNA, Department of Chemistry, University of Aveiro, 3810-193, Aveiro, Portugal. Electronic address: .
Al Jabal GA; Departments of Medicinal Chemistry and Pharmacognosy, Faculty of Pharmacy, Jordan University of Science and Technology, Irbid, Jordan. Electronic address: .
Benali Y; Laboratoire D'Anatomie et Cytologie Pathologiques Vétérinaires. Département de Microbiologie et Pathologie Vétérinaire. Institut Pasteur D'Algérie. 1 Rue Du Docteur LAVERAN. El Hamma, Algeria. Electronic address: .
Ameraoui R; Centre de Recherche Scientifique et Technique en Analyses Physico-chimiques CRAPC, BP 384, Bou-Ismail, 42004, Tipaza, Algeria. Electronic address: .
Hadjadj M; Centre de Recherche Scientifique et Technique en Analyses Physico-chimiques CRAPC, BP 384, Bou-Ismail, 42004, Tipaza, Algeria. Electronic address: .
Taïbi A; Laboratoire de Parasitologie et Mycologie, Laboratoire de Recherche « Santé et Production Animale, École Nationale Supérieure Vétérinaire, B.P. 228, Oued Smar- Alger, Algeria. Electronic address: .
Boutaiba ZM; Centre de Recherche Scientifique et Technique en Analyses Physico-chimiques CRAPC, BP 384, Bou-Ismail, 42004, Tipaza, Algeria. Electronic address: .
Abou-Mustapha M; Centre de Recherche Scientifique et Technique en Analyses Physico-chimiques CRAPC, BP 384, Bou-Ismail, 42004, Tipaza, Algeria. Electronic address: .
Khammar F; Université des Sciences et de La Technologie Houari Boumediene (USTHB), Faculté des Sciences Biologiques (FSB), Laboratoire de Recherche sur Les Zones Arides, (LRZA), BP 32 El Alia 16111, Bab Ezzouar, 16111, Algeria. Electronic address: .
Dergal F; Centre de Recherche Scientifique et Technique en Analyses Physico-chimiques CRAPC, BP 384, Bou-Ismail, 42004, Tipaza, Algeria. Electronic address: .
Hassaine R; Centre de Recherche Scientifique et Technique en Analyses Physico-chimiques CRAPC, BP 384, Bou-Ismail, 42004, Tipaza, Algeria. Electronic address: .
Boukenna L; Centre de Recherche Scientifique et Technique en Analyses Physico-chimiques CRAPC, BP 384, Bou-Ismail, 42004, Tipaza, Algeria. Electronic address: .
Bachari K; Centre de Recherche Scientifique et Technique en Analyses Physico-chimiques CRAPC, BP 384, Bou-Ismail, 42004, Tipaza, Algeria. Electronic address: .
Soares Silva AM; QOPNA, Department of Chemistry, University of Aveiro, 3810-193, Aveiro, Portugal. Electronic address: .
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Źródło :
Chemico-biological interactions [Chem Biol Interact] 2021 Aug 25; Vol. 345, pp. 109511. Date of Electronic Publication: 2021 May 11.
Typ publikacji :
Journal Article
MeSH Terms :
Models, Molecular*
Apoptosis/*drug effects
Carcinoma, Hepatocellular/*pathology
Intracellular Space/*drug effects
Lactoylglutathione Lyase/*antagonists & inhibitors
Liver Neoplasms/*pathology
Pyruvaldehyde/*metabolism
Animals ; Antineoplastic Agents/metabolism ; Antineoplastic Agents/pharmacology ; Antineoplastic Agents/therapeutic use ; Biological Transport ; Carcinoma, Hepatocellular/drug therapy ; Cell Line, Tumor ; Enzyme Inhibitors/metabolism ; Enzyme Inhibitors/pharmacology ; Enzyme Inhibitors/therapeutic use ; Gene Expression Regulation, Neoplastic/drug effects ; Intracellular Space/metabolism ; Lactoylglutathione Lyase/chemistry ; Lactoylglutathione Lyase/metabolism ; Liposomes/metabolism ; Liver Neoplasms/drug therapy ; Molecular Docking Simulation ; Molecular Dynamics Simulation ; Molecular Targeted Therapy ; Protein Conformation ; Rats ; Rats, Wistar ; Xenograft Model Antitumor Assays
Czasopismo naukowe
Tytuł :
Targeted in situ cross-linking mass spectrometry and integrative modeling reveal the architectures of three proteins from SARS-CoV-2.
Autorzy :
Slavin M; Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Zamel J; Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Zohar K; Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Eliyahu T; Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Braitbard M; Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Brielle E; Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Baraz L; Hadassah Academic College Jerusalem, Jerusalem 9101001, Israel.; Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, The Kuvin Center for the Study of Infectious and Tropical Diseases, The Hebrew University-Hadassah Medical School, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Stolovich-Rain M; Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, The Kuvin Center for the Study of Infectious and Tropical Diseases, The Hebrew University-Hadassah Medical School, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Friedman A; Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, The Kuvin Center for the Study of Infectious and Tropical Diseases, The Hebrew University-Hadassah Medical School, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Wolf DG; Clinical Virology Unit, Hadassah Hebrew University Medical Center, 9190401 Jerusalem, Israel.
Rouvinski A; Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, The Kuvin Center for the Study of Infectious and Tropical Diseases, The Hebrew University-Hadassah Medical School, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Linial M; Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel; .
Schneidman-Duhovny D; Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel; .; The Rachel and Selim Benin School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Kalisman N; Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel; .
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Źródło :
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2021 Aug 24; Vol. 118 (34).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Models, Molecular*
SARS-CoV-2/*chemistry
Viral Proteins/*chemistry
Cross-Linking Reagents/chemistry ; HEK293 Cells ; Humans ; Mass Spectrometry ; Protein Domains
Czasopismo naukowe
Tytuł :
Infrared harmonic features of collagen models at B3LYP-D3: From amide bands to the THz region.
Autorzy :
Cutini M; Department of Chemistry and NIS (Nanostructured Interfaces and Surfaces) Center, University of Torino, Via P. Giuria 7, 10125 Turin, Italy.
Ugliengo P; Department of Chemistry and NIS (Nanostructured Interfaces and Surfaces) Center, University of Torino, Via P. Giuria 7, 10125 Turin, Italy.
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Źródło :
The Journal of chemical physics [J Chem Phys] 2021 Aug 21; Vol. 155 (7), pp. 075102.
Typ publikacji :
Journal Article
MeSH Terms :
Density Functional Theory*
Models, Molecular*
Amides/*chemistry
Collagen/*chemistry
Proline/chemistry ; Protein Conformation, alpha-Helical ; Solvents/chemistry ; Vibration
Czasopismo naukowe
Tytuł :
Investigation of the Complexes Formed between PARP1 Inhibitors and PARP1 G-Quadruplex at the Gene Promoter Region.
Autorzy :
Dallavalle S; Department of Food, Environmental and Nutritional Sciences (DEFENS), University of Milan (Università degli Studi di Milano), 20133 Milan, Italy.; National Institute of Fundamental Studies, Kandy 20000, Sri Lanka.
Princiotto S; Department of Food, Environmental and Nutritional Sciences (DEFENS), University of Milan (Università degli Studi di Milano), 20133 Milan, Italy.
Mattio LM; Department of Food, Environmental and Nutritional Sciences (DEFENS), University of Milan (Università degli Studi di Milano), 20133 Milan, Italy.
Artali R; Scientia Advice di Roberto Artali, 20832 Desio, Italy.
Musso L; Department of Food, Environmental and Nutritional Sciences (DEFENS), University of Milan (Università degli Studi di Milano), 20133 Milan, Italy.
Aviñó A; Institute for Advanced Chemistry of Catalonia (IQAC), CSIC, Networking Center on Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), 08034 Barcelona, Spain.
Eritja R; Institute for Advanced Chemistry of Catalonia (IQAC), CSIC, Networking Center on Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), 08034 Barcelona, Spain.
Pisano C; Biogem, Research Institute, Ariano Irpino, 83100 Avellino, Italy.
Gargallo R; Department of Chemical Engineering and Analytical Chemistry, University of Barcelona, 08028 Barcelona, Spain.
Mazzini S; Department of Food, Environmental and Nutritional Sciences (DEFENS), University of Milan (Università degli Studi di Milano), 20133 Milan, Italy.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2021 Aug 14; Vol. 22 (16). Date of Electronic Publication: 2021 Aug 14.
Typ publikacji :
Journal Article
MeSH Terms :
G-Quadruplexes*
Models, Molecular*
Promoter Regions, Genetic*
Poly (ADP-Ribose) Polymerase-1/*genetics
Poly(ADP-ribose) Polymerase Inhibitors/*chemistry
Benzimidazoles/chemistry ; Benzimidazoles/pharmacology ; DNA/chemistry ; DNA/drug effects ; Humans ; Indazoles/chemistry ; Indazoles/pharmacology ; Magnetic Resonance Spectroscopy ; Phthalazines/chemistry ; Phthalazines/pharmacology ; Piperazines/chemistry ; Piperazines/pharmacology ; Piperidines/chemistry ; Piperidines/pharmacology ; Poly(ADP-ribose) Polymerase Inhibitors/pharmacology
Czasopismo naukowe
Tytuł :
Enthalpy-Entropy Compensation in the Promiscuous Interaction of an Intrinsically Disordered Protein with Homologous Protein Partners.
Autorzy :
Kragelj J; Université Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, Grenoble, France.
Orand T; Université Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, Grenoble, France.
Delaforge E; Université Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, Grenoble, France.
Tengo L; Université Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, Grenoble, France.
Blackledge M; Université Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, Grenoble, France.
Palencia A; Institute for Advanced Biosciences, Structural Biology of Novel Targets in Human Diseases, INSERM U1209, CNRS UMR5309, Université Grenoble Alpes, Grenoble, France.
Jensen MR; Université Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, Grenoble, France.
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Źródło :
Biomolecules [Biomolecules] 2021 Aug 13; Vol. 11 (8). Date of Electronic Publication: 2021 Aug 13.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
JNK Mitogen-Activated Protein Kinases*/chemistry
JNK Mitogen-Activated Protein Kinases*/metabolism
MAP Kinase Kinase 4*/chemistry
MAP Kinase Kinase 4*/metabolism
Mitogen-Activated Protein Kinase 14*/chemistry
Mitogen-Activated Protein Kinase 14*/metabolism
Models, Molecular*
Humans ; Kinetics ; Protein Binding ; Protein Conformation ; Protein Folding
Czasopismo naukowe
Tytuł :
Efficient Search for Energetically Favorable Molecular Conformations against Metastable States via Gray-Box Optimization.
Autorzy :
Terayama K; Graduate School of Medical Life Science, Yokohama City University, Tsurumi-ku, Yokohama 230-0045, Japan.; RIKEN Center for Advanced Intelligence Project, Tokyo 103-0027, Japan.; Medical Sciences Innovation Hub Program, RIKEN, Yokohama 230-0045, Japan.; Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan.
Sumita M; RIKEN Center for Advanced Intelligence Project, Tokyo 103-0027, Japan.; International Center for Materials Nanoarchitectonics(WPI-MANA), National Institute for Materials Science, Tsukuba 305-0044, Japan.
Katouda M; Department of Computational Science and Technology, Research Organization for Information Science and Technology, Minato-ku, Tokyo 105-0013, Japan.; Waseda Research Institute for Science and Engineering, Waseda University, Sinjuku-ku, Tokyo 169-8555, Japan.
Tsuda K; RIKEN Center for Advanced Intelligence Project, Tokyo 103-0027, Japan.; Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa 277-8561, Japan.; Research and Services Division of Materials Data and Integrated System, National Institute for Materials Science, Tsukuba 305-0047, Japan.
Okuno Y; Medical Sciences Innovation Hub Program, RIKEN, Yokohama 230-0045, Japan.; Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan.
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Źródło :
Journal of chemical theory and computation [J Chem Theory Comput] 2021 Aug 10; Vol. 17 (8), pp. 5419-5427. Date of Electronic Publication: 2021 Jul 14.
Typ publikacji :
Journal Article
MeSH Terms :
Models, Molecular*
Algorithms ; Density Functional Theory ; Dipeptides/chemistry ; Molecular Conformation
Czasopismo naukowe
Tytuł :
The Changes in the p53 Protein across the Animal Kingdom Point to Its Involvement in Longevity.
Autorzy :
Bartas M; Department of Biology and Ecology, Faculty of Science, University of Ostrava, 71000 Ostrava, Czech Republic.
Brázda V; Institute of Biophysics of the Czech Academy of Sciences, 61265 Brno, Czech Republic.
Volná A; Department of Physics, Faculty of Science, University of Ostrava, Chittussiho 10, 71000 Ostrava, Czech Republic.
Červeň J; Department of Biology and Ecology, Faculty of Science, University of Ostrava, 71000 Ostrava, Czech Republic.
Pečinka P; Department of Biology and Ecology, Faculty of Science, University of Ostrava, 71000 Ostrava, Czech Republic.
Zawacka-Pankau JE; Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland.; Center for Hematology and Regenerative Medicine, Department of Medicine, Huddinge, Karolinska Institute, SE 171-74 Stockholm, Sweden.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2021 Aug 07; Vol. 22 (16). Date of Electronic Publication: 2021 Aug 07.
Typ publikacji :
Journal Article
MeSH Terms :
Databases, Genetic*
Gene Dosage*
Longevity*
Models, Molecular*
Animals ; Protein Domains ; Protein Structure, Secondary ; Species Specificity ; Tumor Suppressor Protein p53/chemistry ; Tumor Suppressor Protein p53/genetics ; Tumor Suppressor Protein p53/metabolism
Czasopismo naukowe
Tytuł :
The Crystal Structure of the Ca -ATPase 1 from Listeria monocytogenes reveals a Pump Primed for Dephosphorylation.
Autorzy :
Hansen SB; Department of Molecular Biology and Genetics, Aarhus University, Denmark; The Danish Research Institute for Translational Neuroscience (DANDRITE), Nordic EMBL Partnership for Molecular Medicine, Denmark.
Dyla M; Department of Molecular Biology and Genetics, Aarhus University, Denmark; The Danish Research Institute for Translational Neuroscience (DANDRITE), Nordic EMBL Partnership for Molecular Medicine, Denmark.
Neumann C; Department of Molecular Biology and Genetics, Aarhus University, Denmark; The Danish Research Institute for Translational Neuroscience (DANDRITE), Nordic EMBL Partnership for Molecular Medicine, Denmark.
Quistgaard EMH; Department of Molecular Biology and Genetics, Aarhus University, Denmark; The Danish Research Institute for Translational Neuroscience (DANDRITE), Nordic EMBL Partnership for Molecular Medicine, Denmark.
Andersen JL; Department of Molecular Biology and Genetics, Aarhus University, Denmark; The Danish Research Institute for Translational Neuroscience (DANDRITE), Nordic EMBL Partnership for Molecular Medicine, Denmark.
Kjaergaard M; Department of Molecular Biology and Genetics, Aarhus University, Denmark; The Danish Research Institute for Translational Neuroscience (DANDRITE), Nordic EMBL Partnership for Molecular Medicine, Denmark; Aarhus Institute of Advanced Studies (AIAS), Denmark; The Danish National Research Foundation Center for Proteins in Memory (PROMEMO), Denmark.
Nissen P; Department of Molecular Biology and Genetics, Aarhus University, Denmark; The Danish Research Institute for Translational Neuroscience (DANDRITE), Nordic EMBL Partnership for Molecular Medicine, Denmark; The Danish National Research Foundation Center for Proteins in Memory (PROMEMO), Denmark. Electronic address: .
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Źródło :
Journal of molecular biology [J Mol Biol] 2021 Aug 06; Vol. 433 (16), pp. 167015. Date of Electronic Publication: 2021 Apr 30.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Binding Sites*
Models, Molecular*
Protein Binding*
Protein Conformation*
Structure-Activity Relationship*
Listeria monocytogenes/*enzymology
Sarcoplasmic Reticulum Calcium-Transporting ATPases/*chemistry
Sarcoplasmic Reticulum Calcium-Transporting ATPases/*metabolism
Calcium/chemistry ; Calcium/metabolism ; Crystallography, X-Ray ; Phosphorylation
Czasopismo naukowe
Tytuł :
The Role of the Membrane in Transporter Folding and Activity.
Autorzy :
Ernst M; Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine in St. Louis, 660 South Euclid Avenue, St. Louis, MO 63110, USA.
Robertson JL; Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine in St. Louis, 660 South Euclid Avenue, St. Louis, MO 63110, USA. Electronic address: .
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Źródło :
Journal of molecular biology [J Mol Biol] 2021 Aug 06; Vol. 433 (16), pp. 167103. Date of Electronic Publication: 2021 Jun 15.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Review
MeSH Terms :
Models, Molecular*
Protein Folding*
Cell Membrane/*chemistry
Cell Membrane/*metabolism
Membrane Transport Proteins/*chemistry
Membrane Transport Proteins/*metabolism
Lipid Bilayers/chemistry ; Structure-Activity Relationship
Czasopismo naukowe
Tytuł :
A Conserved Motif in Intracellular Loop 1 Stabilizes the Outward-Facing Conformation of TmrAB.
Autorzy :
Millan CR; Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721, USA. Electronic address: .
Francis M; Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721, USA. Electronic address: .
Khandelwal NK; Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721, USA. Electronic address: .
Thompson VF; Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721, USA. Electronic address: .
Thaker TM; Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721, USA. Electronic address: .
Tomasiak TM; Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721, USA. Electronic address: .
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Źródło :
Journal of molecular biology [J Mol Biol] 2021 Aug 06; Vol. 433 (16), pp. 166834. Date of Electronic Publication: 2021 Jan 29.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Amino Acid Motifs*
Conserved Sequence*
Models, Molecular*
Protein Conformation*
ATP-Binding Cassette Transporters/*chemistry
ATP-Binding Cassette Transporters/*metabolism
ATP-Binding Cassette Transporters/genetics ; Bacterial Proteins ; Binding Sites ; Hydrolysis ; Protein Binding ; Protein Interaction Domains and Motifs ; Protein Multimerization ; Structure-Activity Relationship ; Thermus thermophilus
Czasopismo naukowe
Tytuł :
N-terminal Transmembrane-Helix Epitope Tag for X-ray Crystallography and Electron Microscopy of Small Membrane Proteins.
Autorzy :
McIlwain BC; Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, United States.
Erwin AL; Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, United States; Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48019, United States.
Davis AR; Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, United States.
Ben Koff B; Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, United States.
Chang L; Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, United States.
Bylund T; Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, United States.
Chuang GY; Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, United States.
Kwong PD; Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, United States.
Ohi MD; Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, United States; Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48019, United States. Electronic address: .
Lai YT; Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, United States; Moderna Therapeutics, 200 Technology Square, Cambridge, MA 02139, United States. Electronic address: .
Stockbridge RB; Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, United States; Program in Biophysics, University of Michigan, Ann Arbor, MI 48109, United States. Electronic address: .
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Źródło :
Journal of molecular biology [J Mol Biol] 2021 Aug 06; Vol. 433 (16), pp. 166909. Date of Electronic Publication: 2021 Mar 05.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Models, Molecular*
Protein Interaction Domains and Motifs*
Epitopes/*chemistry
Membrane Proteins/*chemistry
Crystallography, X-Ray ; Epitopes/immunology ; Humans ; Membrane Proteins/immunology ; Microscopy, Electron ; Protein Conformation ; Structure-Activity Relationship
Czasopismo naukowe
Tytuł :
Gating mechanism and a modulatory niche of human GluN1-GluN2A NMDA receptors.
Autorzy :
Wang H; Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China; University of Chinese Academy of Sciences, Beijing 100049, China.
Lv S; Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China; University of Chinese Academy of Sciences, Beijing 100049, China.
Stroebel D; Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, Université PSL, CNRS, INSERM, Paris, France.
Zhang J; Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China.
Pan Y; Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China.
Huang X; Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China.
Zhang X; Department of Biophysics and Department of Pathology of Sir Run Run Shaw Hospital, Center of Cryo Electron Microscopy, Zhejiang University School of Medicine, Hangzhou, China.
Paoletti P; Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, Université PSL, CNRS, INSERM, Paris, France.
Zhu S; Institute of Neuroscience, State Key Laboratory of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China; University of Chinese Academy of Sciences, Beijing 100049, China; Shanghai Center for Brain Science and Brain-Inspired Intelligence Technology, Shanghai 201210, China. Electronic address: .
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Źródło :
Neuron [Neuron] 2021 Aug 04; Vol. 109 (15), pp. 2443-2456.e5. Date of Electronic Publication: 2021 Jun 28.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Models, Molecular*
Nerve Tissue Proteins/*metabolism
Nerve Tissue Proteins/*ultrastructure
Receptors, N-Methyl-D-Aspartate/*metabolism
Receptors, N-Methyl-D-Aspartate/*ultrastructure
Allosteric Regulation ; Cryoelectron Microscopy ; Humans ; Protein Domains/physiology
Czasopismo naukowe

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