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Wyszukujesz frazę ""Models, Theoretical"" wg kryterium: Wszystkie pola


Tytuł:
The influence of explicit local dynamics on range expansions driven by long-range dispersal.
Autorzy:
Villiger N; Department of Physics and Institute for Fundamental Science, University of Oregon, Eugene, OR 97403, USA.
Paulose J
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 May 02; Vol. 13 (5).
Typ publikacji:
Journal Article
MeSH Terms:
Models, Theoretical*
Ecosystem*
Population Dynamics ; Introduced Species ; Seeds
Czasopismo naukowe
Tytuł:
Visualization, benchmarking and characterization of nested single-cell heterogeneity as dynamic forest mixtures.
Autorzy:
Anchang B; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Stanford, California, USA.
Mendez-Giraldez R; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Stanford, California, USA.
Xu X; Integrative Bioinformatics Support Group, National Institute of Environmental Health Sciences, Stanford, California, USA.
Archer TK; Epigenetics & Stem Cell Biology Laboratory/Chromatin & Gene Expression Group, National Institute of Environmental Health Sciences, Stanford, California, USA.
Chen Q; Epigenetics & Stem Cell Biology Laboratory/Chromatin & Gene Expression Group, National Institute of Environmental Health Sciences, Stanford, California, USA.
Hu G; Epigenetics & Stem Cell Biology Laboratory/Chromatin & Gene Expression Group, National Institute of Environmental Health Sciences, Stanford, California, USA.
Plevritis SK; Department of Biomedical Data Science, Center for Cancer Systems Biology, Stanford University, Stanford, California, USA.
Motsinger-Reif AA; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Stanford, California, USA.
Li JL; Integrative Bioinformatics Support Group, National Institute of Environmental Health Sciences, Stanford, California, USA.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2022 Mar 10; Vol. 23 (2).
Typ publikacji:
Journal Article; Research Support, N.I.H., Intramural
MeSH Terms:
Benchmarking*
Models, Theoretical*
Single-Cell Analysis/*methods
Algorithms ; Animals ; Cellular Microenvironment ; Data Analysis ; Decision Trees ; Gene Expression Profiling/methods ; Humans ; Spermatogenesis
Czasopismo naukowe
Tytuł:
MG-BERT: leveraging unsupervised atomic representation learning for molecular property prediction.
Autorzy:
Zhang XC; State Key Laboratory of High-Performance Computing, School of Computer Science, National University of Defense Technology, China.
Wu CK; State Key Laboratory of High-Performance Computing, School of Computer Science, National University of Defense Technology, China.
Yang ZJ; Xiangya School of Pharmaceutical Sciences, Central South University, China.
Wu ZX; College of Pharmaceutical Sciences, Zhengjiang University, China.
Yi JC; State Key Laboratory of High-Performance Computing, School of Computer Science, National University of Defense Technology, China.
Hsieh CY; Tencent Quantum Laboratory since 2018. He received his PhD degree in Physics from the University of Ottawa in 2012 and worked as a postdoctoral researcher at the University of Toronto (2012-2013) and Massachusetts Institute of Technology (2013-2016), respectively. Before joining Tencent, he worked as a senior researcher at Singapore-MIT Alliance for Science and Technology (2017-2018).
Hou TJ; College of Pharmaceutical Sciences, Zhejiang University, China.
Cao DS; Xiangya School of Pharmaceutical Sciences, Central South University, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Nov 05; Vol. 22 (6).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Models, Theoretical*
Neural Networks, Computer*
Czasopismo naukowe
Tytuł:
Feature extraction approaches for biological sequences: a comparative study of mathematical features.
Autorzy:
Bonidia RP; Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paraná, UTFPR, Campus Cornélio Procópio, 86300-000, Brazil.; Institute of Mathematics and Computer Sciences, University of São Paulo - USP, São Carlos, 13566-590, Brazil.
Sampaio LDH; Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paraná, UTFPR, Campus Cornélio Procópio, 86300-000, Brazil.
Domingues DS; Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paraná, UTFPR, Campus Cornélio Procópio, 86300-000, Brazil.; Department of Botany, Institute of Biosciences, São Paulo State University (UNESP), Rio Claro 13506-900, Brazil.
Paschoal AR; Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paraná, UTFPR, Campus Cornélio Procópio, 86300-000, Brazil.
Lopes FM; Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paraná, UTFPR, Campus Cornélio Procópio, 86300-000, Brazil.
de Carvalho ACPLF; Institute of Mathematics and Computer Sciences, University of São Paulo - USP, São Carlos, 13566-590, Brazil.
Sanches DS; Department of Computer Science, Bioinformatics Graduate Program (PPGBIOINFO), Federal University of Technology - Paraná, UTFPR, Campus Cornélio Procópio, 86300-000, Brazil.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).
Typ publikacji:
Comparative Study; Journal Article; Review
MeSH Terms:
Deep Learning*
Models, Theoretical*
Computational Biology/*methods
RNA, Circular/*genetics
RNA, Long Noncoding/*genetics
RNA, Messenger/*genetics
Base Sequence/genetics ; Entropy ; Fourier Analysis ; Humans ; Open Reading Frames ; RNA, Circular/classification ; RNA, Long Noncoding/classification ; RNA, Messenger/classification
Czasopismo naukowe
Tytuł:
Venn diagrams in bioinformatics.
Autorzy:
Jia A; Biological Science Research Center at Southwest University, Chongqing 400715, China.
Xu L; University of California, Berkeley 400715, China.
Wang Y; Biological Science Research Center at Southwest University, Chongqing 400715, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms:
Computer Graphics*
Gene Ontology*
Gene Regulatory Networks*
Models, Theoretical*
Computational Biology/*methods
Gene Expression Profiling/*methods
Animals ; Databases, Genetic ; Humans ; Software
Czasopismo naukowe
Tytuł:
Integrating multi-scale neighbouring topologies and cross-modal similarities for drug-protein interaction prediction.
Autorzy:
Xuan P; School of Computer Science and Technology, Heilongjiang University, Harbin 150080, China.
Zhang Y; School of Computer Science and Technology, Heilongjiang University, Harbin 150080, China.
Cui H; Department of Computer Science and Information Technology, La Trobe University, Melbourne 3083, Australia.
Zhang T; School of Mathematical Science, Heilongjiang University, Harbin 150080, China.
Guo M; School of Electrical and Information Engineering, Beijing University of Civil Engineering and Architecture, Beijing 100044, China.
Nakaguchi T; Center for Frontier Medical Engineering, Chiba University, Chiba 2638522, Japan.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Algorithms*
Machine Learning*
Models, Theoretical*
Computational Biology/*methods
Pharmaceutical Preparations/*metabolism
Proteins/*metabolism
Drug Development/methods ; Humans ; Pharmaceutical Preparations/chemistry ; Protein Binding ; Proteins/chemistry ; Reproducibility of Results ; Support Vector Machine
Czasopismo naukowe
Tytuł:
Perspectives of using Cloud computing in integrative analysis of multi-omics data.
Autorzy:
Augustyn DR; Silesian University of Technology, Department of Applied Informatics, Gliwice 44-100, Poland.
Wyciślik Ł; Silesian University of Technology, Department of Applied Informatics, Gliwice 44-100, Poland.
Mrozek D; Silesian University of Technology, Department of Applied Informatics, Gliwice 44-100, Poland.
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Źródło:
Briefings in functional genomics [Brief Funct Genomics] 2021 Jul 17; Vol. 20 (4), pp. 198-206.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Cloud Computing*
Models, Theoretical*
Data Analysis
Czasopismo naukowe
Tytuł:
Publishing reproducible dynamic kinetic models.
Autorzy:
Porubsky V; Department of Bioengineering, University of Washington, Seattle, 98105,USA.
Smith L; Department of Bioengineering, University of Washington, Seattle, 98105,USA.
Sauro HM; Department of Bioengineering, University of Washington, Seattle, 98105,USA.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 May 20; Vol. 22 (3).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Computational Biology*
Models, Theoretical*
Publishing*
Systems Biology*
Kinetics
Czasopismo naukowe
Tytuł:
Two decades of research with the GreenLab model in agronomy.
Autorzy:
de Reffye P; CIRAD, UMR AMAP, Montpellier, France.; AMAP, Univ Montpellier, CIRAD, CNRS, INRAE, IRD, Montpellier, France.
Hu B; Chinese Academy of Sciences, Institute of Automation, National Laboratory of Pattern Recognition (CASIA-NLPR), Beijing, China.
Kang M; Chinese Academy of Sciences, Institute of Automation, Key Laboratory of Management and Control for Complex Systems (CASIA-LMCCS), Beijing, China.
Letort V; CentraleSupelec MICS, Paris-Saclay, France.
Jaeger M; CIRAD, UMR AMAP, Montpellier, France.; AMAP, Univ Montpellier, CIRAD, CNRS, INRAE, IRD, Montpellier, France.
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Źródło:
Annals of botany [Ann Bot] 2021 Feb 09; Vol. 127 (3), pp. 281-295.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Models, Theoretical*
Plant Development*
Computer Simulation ; Plant Structures
Czasopismo naukowe
Tytuł:
A Darwinian Uncertainty Principle.
Autorzy:
Gascuel O; Unité Bioinformatique Evolutive, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France.
Steel M; Biomathematics Research Centre, University of Canterbury, Christchurch, New Zealand.
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Źródło:
Systematic biology [Syst Biol] 2020 May 01; Vol. 69 (3), pp. 521-529.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Models, Theoretical*
Phylogeny*
Classification/*methods
Computer Simulation
Czasopismo naukowe
Tytuł:
Sensitivity and specificity of information criteria.
Autorzy:
Dziak JJ; Methodology Center at Penn State.
Coffman DL; Department of Epidemiology and Biostatistics at Temple University.
Lanza ST; Department of Biobehavioral Health and a principal investigator at the Methodology Center.
Li R; Department of Statistics and a principal investigator in the Methodology Center at Penn State.
Jermiin LS; Research School of Biology at the Australian National University and a visiting researcher at the Earth Institute and School of Biology and Environmental Science, University College Dublin.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2020 Mar 23; Vol. 21 (2), pp. 553-565.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Review
MeSH Terms:
Models, Theoretical*
Computational Biology/*methods
Bayes Theorem ; Likelihood Functions ; Sample Size
Czasopismo naukowe
Tytuł:
Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv.
Autorzy:
Khan FZ; The University of Melbourne, School of Computing and Information System, Doug Mcdonnell Building, Parkville, Australia, 3052.; Common Workflow Language Project.
Soiland-Reyes S; Common Workflow Language Project.; The University of Manchester, UK.
Sinnott RO; The University of Melbourne, School of Computing and Information System, Doug Mcdonnell Building, Parkville, Australia, 3052.
Lonie A; The University of Melbourne, School of Computing and Information System, Doug Mcdonnell Building, Parkville, Australia, 3052.
Goble C; The University of Manchester, UK.
Crusoe MR; Common Workflow Language Project.
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Źródło:
GigaScience [Gigascience] 2019 Nov 01; Vol. 8 (11).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genomics*
Models, Theoretical*
Workflow*
Humans ; Software
Czasopismo naukowe
Tytuł:
The Relative Importance of Modeling Site Pattern Heterogeneity Versus Partition-Wise Heterotachy in Phylogenomic Inference.
Autorzy:
Wang HC; Department of Mathematics and Statistics, Dalhousie University, 6316 Coburg Road, Halifax, Nova Scotia B3H 4R2, Canada.; Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, 5850 College Street, Halifax, Nova Scotia B3H 4R2, Canada.
Susko E; Department of Mathematics and Statistics, Dalhousie University, 6316 Coburg Road, Halifax, Nova Scotia B3H 4R2, Canada.; Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, 5850 College Street, Halifax, Nova Scotia B3H 4R2, Canada.
Roger AJ; Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, 5850 College Street, Halifax, Nova Scotia B3H 4R2, Canada.; Department of Biochemistry and Molecular Biology, Dalhousie University, 5850 College Street, Halifax, Nova Scotia B3H 4R2, Canada.
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Źródło:
Systematic biology [Syst Biol] 2019 Nov 01; Vol. 68 (6), pp. 1003-1019.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Models, Theoretical*
Phylogeny*
Classification/*methods
Computer Simulation ; Microsporidia/classification ; Microsporidia/genetics
Czasopismo naukowe
Tytuł:
An anatomical hypothesis: a "concentric-structured model" for the theoretical understanding of the surgical anatomy in the upper mediastinum required for esophagectomy with radical mediastinal lymph node dissection.
Autorzy:
Fujiwara H; Department of Esophageal Surgery, National Cancer Center Hospital East, Kashiwa, Chiba, Japan.; Department of Esophageal Surgery, Tokyo Medical and Dental University, Bunkyo-ku, Tokyo, Japan.
Kanamori J; Department of Esophageal Surgery, National Cancer Center Hospital East, Kashiwa, Chiba, Japan.
Nakajima Y; Department of Esophageal Surgery, Tokyo Medical and Dental University, Bunkyo-ku, Tokyo, Japan.
Kawano T; Department of Esophageal Surgery, Tokyo Medical and Dental University, Bunkyo-ku, Tokyo, Japan.
Miura A; Department of Esophageal Surgery, Tokyo Metropolitan Cancer and Infectious Diseases Center Komagome Hospital, Tokyo, Japan.
Fujita T; Department of Esophageal Surgery, National Cancer Center Hospital East, Kashiwa, Chiba, Japan.
Akita K; Department of Clinical Anatomy, Tokyo Medical and Dental University, Bunkyo-ku, Tokyo, Japan.
Daiko H; Department of Esophageal Surgery, National Cancer Center Hospital East, Kashiwa, Chiba, Japan.; Department of Esophageal Surgery, National Cancer Center Hospital, Chuo-ku, Tokyo, Japan.
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Źródło:
Diseases of the esophagus : official journal of the International Society for Diseases of the Esophagus [Dis Esophagus] 2019 Aug 01; Vol. 32 (8).
Typ publikacji:
Journal Article
MeSH Terms:
Models, Theoretical*
Esophageal Neoplasms/*surgery
Esophagectomy/*methods
Lymph Node Excision/*methods
Mediastinum/*anatomy & histology
Thoracoscopy/*methods
Adult ; Aged ; Aged, 80 and over ; Female ; Humans ; Male ; Mediastinum/surgery ; Middle Aged
Czasopismo naukowe
Tytuł:
Development and validation of an automated algorithm for identifying patients at higher risk for drug-induced acute kidney injury.
Autorzy:
Jeon N; Department of Pharmacotherapy, College of Pharmacy University of Utah, Salt Lake City, UT.
Staley B; Department of Pharmacy, UF Health Shands Hospital, Gainesville, FL.
Henriksen C; Department of Pharmaceutical Outcomes and Policy, College of Pharmacy University of Florida, Gainesville, FL.
Lipori GP; University of Florida Health and Shands Hospital, Gainesville, FL.
Winterstein AG; Department of Pharmaceutical Outcomes and Policy, College of Pharmacy, Department of Epidemiology, College of Public Health and Health Profession & College of Medicine, University of Florida, Gainesville, FL.
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Źródło:
American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists [Am J Health Syst Pharm] 2019 May 02; Vol. 76 (10), pp. 654-666.
Typ publikacji:
Journal Article; Validation Study
MeSH Terms:
Algorithms*
Decision Support Techniques*
Inpatients*
Models, Theoretical*
Chemical and Drug Induced Liver Injury/*epidemiology
Aged ; Area Under Curve ; Chemical and Drug Induced Liver Injury/prevention & control ; Cohort Studies ; Electronic Health Records ; Female ; Florida/epidemiology ; Hospitals, University ; Humans ; Male ; Middle Aged ; Pharmacy Service, Hospital ; Reproducibility of Results ; Retrospective Studies ; Risk Assessment
Czasopismo naukowe
Tytuł:
Using Post-Structuralism to Rethink Risk and Resilience: Recommendations for Social Work Education, Practice, and Research.
Autorzy:
Prowell AN; Ashley Nicole Prowell, MSW, is a PhD candidate, School of Social Work, Little Hall, Box 870314, University of Alabama, 670 Judy Bonner Drive, Tuscaloosa, AL 35401; e-mail: .
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Źródło:
Social work [Soc Work] 2019 Apr 01; Vol. 64 (2), pp. 123-130.
Typ publikacji:
Journal Article
MeSH Terms:
Models, Theoretical*
Research*
Resilience, Psychological*
Social Work/*education
Humans ; Social Marginalization
Czasopismo naukowe
Tytuł:
Development and validation of a dynamic inpatient risk prediction model for clinically significant hypokalemia using electronic health record data.
Autorzy:
Li Y; Department of Pharmaceutical Outcomes and Policy, College of Pharmacy, University of Florida, Gainesville, FL.
Staley B; Department of Pharmacy Services, UF Health Shands Hospital, University of Florida, Gainesville, FL.
Henriksen C; Department of Pharmaceutical Outcomes and Policy, College of Pharmacy, University of Florida, Gainesville, FL.
Xu D; Department of Pharmaceutical Outcomes and Policy, College of Pharmacy, University of Florida, Gainesville, FL.
Lipori G; UF Health Shands Hospital, University of Florida, Gainesville, FL.
Winterstein AG; Department of Pharmaceutical Outcomes and Policy, College of Pharmacy, University of Florida, Gainesville, FL.; Department of Epidemiology, College of Public Health and Health Professionals and College of Medicine, University of Florida, Gainesville, FL.
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Źródło:
American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists [Am J Health Syst Pharm] 2019 Feb 09; Vol. 76 (5), pp. 301-311.
Typ publikacji:
Journal Article; Multicenter Study; Research Support, Non-U.S. Gov't
MeSH Terms:
Models, Theoretical*
Electronic Health Records/*trends
Hospitalization/*trends
Hypokalemia/*diagnosis
Hypokalemia/*epidemiology
Adult ; Aged ; Cohort Studies ; Electronic Health Records/standards ; Female ; Florida/epidemiology ; Humans ; Hypokalemia/prevention & control ; Male ; Middle Aged ; Predictive Value of Tests ; Reproducibility of Results ; Retrospective Studies ; Risk Assessment
Czasopismo naukowe
Tytuł:
A Noisy Analog-to-Digital Converter Connects Cytosolic Calcium Bursts to Transcription Factor Nuclear Localization Pulses in Yeast.
Autorzy:
Hsu IS; Department of Cell & Systems Biology, University of Toronto, Toronto ON, Canada M5S 3B2.
Strome B; Department of Cell & Systems Biology, University of Toronto, Toronto ON, Canada M5S 3B2.
Plotnikov S; Department of Cell & Systems Biology, University of Toronto, Toronto ON, Canada M5S 3B2.
Moses AM; Department of Cell & Systems Biology, University of Toronto, Toronto ON, Canada M5S 3B2 .
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2019 Feb 07; Vol. 9 (2), pp. 561-570. Date of Electronic Publication: 2019 Feb 07.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Calcium Signaling*
Models, Theoretical*
Cell Nucleus/*metabolism
DNA-Binding Proteins/*metabolism
Saccharomyces cerevisiae Proteins/*metabolism
Transcription Factors/*metabolism
Active Transport, Cell Nucleus ; Saccharomyces cerevisiae/metabolism ; Stochastic Processes
Czasopismo naukowe
Tytuł:
Common inpatient hypoglycemia phenotypes identified from an automated electronic health record-based prediction model.
Autorzy:
Choi Y; Pharmaceutical Outcomes and Policy, College of Pharmacy, University of Florida, Gainesville, FL.
Staley B; Department of Pharmacy Services, UF Health Shands, University of Florida, Gainesville, FL.
Soria-Saucedo R; Pharmaceutical Outcomes & Policy, College of Pharmacy, University of Florida, Gainesville, FL.
Henriksen C; Pharmaceutical Outcomes and Policy, College of Pharmacy, University of Florida, Gainesville, FL.
Rosenberg A; Department of Pharmacy Services, UF Health Shands, University of Florida, Gainesville, FL.
Winterstein AG; Pharmaceutical Outcomes and Policy, College of Pharmacy, Epidemiology, and Colleges of Medicine and Public Health & Health Professions, University of Florida, Gainesville, FL.
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Źródło:
American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists [Am J Health Syst Pharm] 2019 Jan 25; Vol. 76 (3), pp. 166-174.
Typ publikacji:
Journal Article; Multicenter Study
MeSH Terms:
Models, Theoretical*
Phenotype*
Electronic Health Records/*trends
Hospitalization/*trends
Hypoglycemia/*diagnosis
Adult ; Aged ; Female ; Humans ; Hypoglycemia/blood ; Hypoglycemia/epidemiology ; Male ; Middle Aged ; Predictive Value of Tests ; Risk Factors
Czasopismo naukowe
Tytuł:
Seeing the wood for the trees: a forest of methods for optimization and omic-network integration in metabolic modelling.
Autorzy:
Vijayakumar S; Department of Computer Science and Information Systems, Teesside University, UK.
Conway M; Computer Laboratory, University of Cambridge, UK.
Lió P; Computer Laboratory, University of Cambridge, UK.
Angione C; Department of Computer Science and Information Systems, Teesside University, UK.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2018 Nov 27; Vol. 19 (6), pp. 1218-1235.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Metabolism*
Models, Theoretical*
Systems Biology/*methods
Machine Learning
Czasopismo naukowe

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