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Wyszukujesz frazę ""Molecular Sequence Annotation"" wg kryterium: Temat


Tytuł :
Semi-Supervised Pipeline for Autonomous Annotation of SARS-CoV-2 Genomes.
Autorzy :
Beck KL; AI and Cognitive Software, IBM Almaden Research Center, San Jose, CA 95120, USA.
Seabolt E; AI and Cognitive Software, IBM Almaden Research Center, San Jose, CA 95120, USA.
Agarwal A; AI and Cognitive Software, IBM Almaden Research Center, San Jose, CA 95120, USA.
Nayar G; AI and Cognitive Software, IBM Almaden Research Center, San Jose, CA 95120, USA.
Bianco S; AI and Cognitive Software, IBM Almaden Research Center, San Jose, CA 95120, USA.; NSF Center for Cellular Construction, San Francisco, CA 94158, USA.
Krishnareddy H; AI and Cognitive Software, IBM Almaden Research Center, San Jose, CA 95120, USA.
Ngo TA; AI and Cognitive Software, IBM Almaden Research Center, San Jose, CA 95120, USA.
Kunitomi M; AI and Cognitive Software, IBM Almaden Research Center, San Jose, CA 95120, USA.
Mukherjee V; AI and Cognitive Software, IBM Almaden Research Center, San Jose, CA 95120, USA.
Kaufman JH; AI and Cognitive Software, IBM Almaden Research Center, San Jose, CA 95120, USA.
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Źródło :
Viruses [Viruses] 2021 Dec 03; Vol. 13 (12). Date of Electronic Publication: 2021 Dec 03.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Molecular Sequence Annotation*
COVID-19/*virology
SARS-CoV-2/*genetics
Amino Acid Sequence ; Base Sequence ; Computational Biology ; Humans ; Mutation ; Protein Binding ; Protein Domains ; Spike Glycoprotein, Coronavirus/genetics
Czasopismo naukowe
Tytuł :
In-Depth Annotation of the Drosophila Bithorax-Complex Reveals the Presence of Several Alternative ORFs That Could Encode for Motif-Rich Peptides.
Autorzy :
Naville M; IGFL, ENS-Lyon, 32/34 Av. Tony Garnier, 69007 Lyon, France.
Merabet S; IGFL, ENS-Lyon, 32/34 Av. Tony Garnier, 69007 Lyon, France.
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Źródło :
Cells [Cells] 2021 Nov 02; Vol. 10 (11). Date of Electronic Publication: 2021 Nov 02.
Typ publikacji :
Journal Article
MeSH Terms :
Molecular Sequence Annotation*
Drosophila Proteins/*metabolism
Drosophila melanogaster/*metabolism
Open Reading Frames/*genetics
Peptides/*chemistry
Amino Acid Motifs ; Amino Acid Sequence ; Animals ; Drosophila Proteins/chemistry
Czasopismo naukowe
Tytuł :
A GO catalogue of human DNA-binding transcription factors.
Autorzy :
Lovering RC; Functional Gene Annotation, Preclinical and Fundamental Science, UCL Institute of Cardiovascular Science, University College London, London WC1E 6BT, United Kingdom. Electronic address: .
Gaudet P; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, 1 Rue Michel-Servet, 1211 Geneve 4, Switzerland. Electronic address: .
Acencio ML; Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology, Trondheim NO-7491, Norway. Electronic address: .
Ignatchenko A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom. Electronic address: .
Jolma A; Donnelly Centre, University of Toronto, Toronto, Ontario M5S 3E1, Canada. Electronic address: .
Fornes O; Centre for Molecular Medicine and Therapeutics, Department of Medical Genetics, BC Children's Hospital Research Institute, University of British Columbia, 950 W 28th Ave, Vancouver, British Columbia V5Z 4H4, Canada. Electronic address: .
Kuiper M; Department of Biology, Norwegian University of Science and Technology, Trondheim NO-7491, Norway. Electronic address: .
Kulakovskiy IV; Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, 119991, Russia; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia. Electronic address: .
Lægreid A; Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology, Trondheim NO-7491, Norway. Electronic address: .
Martin MJ; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom. Electronic address: .
Logie C; Molecular Biology Department, Faculty of Science, Radboud University, PO Box 9101, 6500HB Nijmegen, the Netherlands. Electronic address: .
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Źródło :
Biochimica et biophysica acta. Gene regulatory mechanisms [Biochim Biophys Acta Gene Regul Mech] 2021 Nov-Dec; Vol. 1864 (11-12), pp. 194765. Date of Electronic Publication: 2021 Oct 18.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Ontology*
Molecular Sequence Annotation*
DNA/*metabolism
Transcription Factors/*classification
Databases, Genetic ; Humans ; Transcription Factors/metabolism
Czasopismo naukowe
Tytuł :
A new comprehensive annotation of leucine-rich repeat-containing receptors in rice.
Autorzy :
Gottin C; UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France.; CIRAD, UMR AGAP Institut, F-34398, Montpellier, France.
Dievart A; UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France.; CIRAD, UMR AGAP Institut, F-34398, Montpellier, France.
Summo M; UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France.; CIRAD, UMR AGAP Institut, F-34398, Montpellier, France.
Droc G; UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France.; CIRAD, UMR AGAP Institut, F-34398, Montpellier, France.
Périn C; UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France.; CIRAD, UMR AGAP Institut, F-34398, Montpellier, France.
Ranwez V; UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France.
Chantret N; UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France.
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Źródło :
The Plant journal : for cell and molecular biology [Plant J] 2021 Oct; Vol. 108 (2), pp. 492-508. Date of Electronic Publication: 2021 Sep 02.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Molecular Sequence Annotation*/methods
Repetitive Sequences, Amino Acid*
Oryza/*genetics
Plant Proteins/*genetics
Genome, Plant ; Genotype ; Oryza/chemistry ; Plant Proteins/chemistry
Czasopismo naukowe
Tytuł :
Mycobacterium lepromatosis MLPM_5000 is a potential heme chaperone protein HemW and mis-annotation of its orthologues in mycobacteria.
Autorzy :
Sharma M; Indian Council of Medical Research-National Institute of Research in Tribal Health, Jabalpur, Madhya Pradesh, India.
Gupta Y; Division of Infectious Diseases, Mayo Clinic, Jacksonville, Florida, USA.
Dwivedi P; Indian Council of Medical Research-National Institute of Research in Tribal Health, Jabalpur, Madhya Pradesh, India; The Maharaja Sayajirao University of Baroda, Vadodara, Gujarat, India.
Kempaiah P; Division of Infectious Diseases, Mayo Clinic, Jacksonville, Florida, USA.
Singh P; Indian Council of Medical Research-National Institute of Research in Tribal Health, Jabalpur, Madhya Pradesh, India. Electronic address: .
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Źródło :
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [Infect Genet Evol] 2021 Oct; Vol. 94, pp. 105015. Date of Electronic Publication: 2021 Jul 24.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Molecular Sequence Annotation*
Bacterial Proteins/*genetics
Hemeproteins/*genetics
Mycobacterium/*genetics
Leprosy/microbiology
SCR Organism :
Mycobacterium lepromatosis
Czasopismo naukowe
Tytuł :
FifBase: a comprehensive fertility-associated indicators factor database for domestic animals.
Autorzy :
Li H; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Hou J; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Chen Z; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Zeng J; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Ni Y; College of Information Engineering, Northwest A&F University, Yangling, Shaanxi, China.
Li Y; College of Information Engineering, Northwest A&F University, Yangling, Shaanxi, China.
Xiao X; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Zhou Y; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Zhang N; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Long D; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Liu H; College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China.
Yang L; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Bai X; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
Li Q; Institutes of Biomedical Sciences, Fudan University, Shanghai, China.
Li T; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Che D; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Li L; Department of Bioinformatics and Biostatistics, SJTU Yale Joint Center Biostatistics, Shanghai Jiao Tong University, Shanghai, China.
Wang X; School of Life Sciences, Tsinghua University, Beijing, China.
Zhang P; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Liao M; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
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Źródło :
Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Data Mining*
Databases, Genetic*
Fertility*
Molecular Sequence Annotation*
Software*
Animals, Domestic/*genetics
Animals
Czasopismo naukowe
Tytuł :
Graph Theoretical Methods and Workflows for Searching and Annotation of RNA Tertiary Base Motifs and Substructures.
Autorzy :
Emrizal R; Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, UKM Bangi, Bangi 43600, Selangor, Malaysia.; Institute of Systems Biology, Universiti Kebangsaan Malaysia, UKM Bangi, Bangi 43600, Selangor, Malaysia.
Hamdani HY; Advanced Medical and Dental Institute, Universiti Sains Malaysia, Bertam, Kepala Batas 13200, Pulau Pinang, Malaysia.
Firdaus-Raih M; Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, UKM Bangi, Bangi 43600, Selangor, Malaysia.; Institute of Systems Biology, Universiti Kebangsaan Malaysia, UKM Bangi, Bangi 43600, Selangor, Malaysia.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2021 Aug 09; Vol. 22 (16). Date of Electronic Publication: 2021 Aug 09.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Algorithms*
Databases, Nucleic Acid*
Molecular Sequence Annotation*
Nucleotide Motifs*
Software*
RNA/*chemistry
RNA/genetics ; Workflow
Czasopismo naukowe
Tytuł :
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes.
Autorzy :
Hufford MB; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.
Seetharam AS; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.; Genome Informatics Facility, Iowa State University, Ames, IA 50011, USA.
Woodhouse MR; USDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA.
Chougule KM; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Ou S; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.
Liu J; Department of Genetics, University of Georgia, Athens, GA 30602, USA.
Ricci WA; Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.
Guo T; Department of Agronomy, Iowa State University, Ames, IA 50011, USA.
Olson A; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Qiu Y; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN 55108, USA.
Della Coletta R; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN 55108, USA.
Tittes S; Center for Population Biology, University of California, Davis, CA 95616, USA.; Department of Evolution and Ecology, University of California, Davis, CA 95616, USA.
Hudson AI; Center for Population Biology, University of California, Davis, CA 95616, USA.; Department of Evolution and Ecology, University of California, Davis, CA 95616, USA.
Marand AP; Department of Genetics, University of Georgia, Athens, GA 30602, USA.
Wei S; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Lu Z; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Wang B; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Tello-Ruiz MK; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Piri RD; Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA.
Wang N; Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.
Kim DW; Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.
Zeng Y; Department of Genetics, University of Georgia, Athens, GA 30602, USA.
O'Connor CH; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN 55108, USA.; Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, MN 55108, USA.
Li X; Department of Agronomy, Iowa State University, Ames, IA 50011, USA.
Gilbert AM; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN 55108, USA.
Baggs E; Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA.
Krasileva KV; Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA.
Portwood JL 2nd; USDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA.
Cannon EKS; USDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA.
Andorf CM; USDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University, Ames, IA 50011, USA.
Manchanda N; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.
Snodgrass SJ; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.
Hufnagel DE; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.; Virus and Prion Research Unit, National Animal Disease Center, USDA-ARS, Ames, IA, 50010, USA.
Jiang Q; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.
Pedersen S; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.
Syring ML; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.
Kudrna DA; Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.
Llaca V; Corteva Agriscience, Johnston, IA 50131, USA.
Fengler K; Corteva Agriscience, Johnston, IA 50131, USA.
Schmitz RJ; Department of Genetics, University of Georgia, Athens, GA 30602, USA.
Ross-Ibarra J; Center for Population Biology, University of California, Davis, CA 95616, USA.; Department of Evolution and Ecology, University of California, Davis, CA 95616, USA.; Genome Center, University of California, Davis, CA 95616, USA.
Yu J; Department of Agronomy, Iowa State University, Ames, IA 50011, USA.
Gent JI; Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.
Hirsch CN; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN 55108, USA.
Ware D; USDA-ARS NAA Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, Ithaca, NY 14853, USA.; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Dawe RK; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA. .
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Źródło :
Science (New York, N.Y.) [Science] 2021 Aug 06; Vol. 373 (6555), pp. 655-662.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Genome, Plant*
Molecular Sequence Annotation*
Zea mays/*genetics
Centromere/genetics ; Chromosome Mapping ; Chromosomes, Plant ; DNA Methylation ; Disease Resistance/genetics ; Genes, Plant ; Genetic Variation ; Genotype ; High-Throughput Nucleotide Sequencing ; Multifactorial Inheritance/genetics ; Phenotype ; Plant Diseases ; Polymorphism, Single Nucleotide ; Regulatory Sequences, Nucleic Acid ; Sequence Analysis, DNA ; Tetraploidy ; Transcriptome ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Functional annotation of noncoding mutations in cancer.
Autorzy :
Umer HM; Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.; Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
Smolinska K; Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.
Komorowski J; Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.; Institute of Computer Science, Polish Academy of Sciences, Warsaw, Poland.; Swedish Collegium for Advanced Study, Uppsala, Sweden.; Washington National Primate Research Center, Seattle, WA, USA.
Wadelius C; Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden .
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Źródło :
Life science alliance [Life Sci Alliance] 2021 Jul 19; Vol. 4 (9). Date of Electronic Publication: 2021 Jul 19 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Computational Biology*/methods
Genomics*/methods
Molecular Sequence Annotation*
Mutation*
Untranslated Regions*
Neoplasms/*genetics
Binding Sites ; Biomarkers, Tumor ; Disease Susceptibility ; Gene Expression Regulation, Neoplastic ; Genetic Predisposition to Disease ; Humans ; Mutation Rate ; Neoplasms/metabolism ; Nucleotide Motifs ; Protein Binding ; Regulatory Sequences, Nucleic Acid ; Signal Transduction ; Transcription Factors/metabolism
Czasopismo naukowe
Tytuł :
snpXplorer: a web application to explore human SNP-associations and annotate SNP-sets.
Autorzy :
Tesi N; Alzheimer Center Amsterdam, Department of Neurology, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam UMC, Amsterdam, The Netherlands.; Section Genomics of Neurodegenerative Diseases and Aging, Department of Clinical Genetics, Vrije Universiteit Amsterdam, Amsterdam UMC, Amsterdam, The Netherlands.; Delft Bioinformatics Lab, Delft University of Technology, Delft, The Netherlands.
van der Lee S; Alzheimer Center Amsterdam, Department of Neurology, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam UMC, Amsterdam, The Netherlands.; Section Genomics of Neurodegenerative Diseases and Aging, Department of Clinical Genetics, Vrije Universiteit Amsterdam, Amsterdam UMC, Amsterdam, The Netherlands.
Hulsman M; Alzheimer Center Amsterdam, Department of Neurology, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam UMC, Amsterdam, The Netherlands.; Section Genomics of Neurodegenerative Diseases and Aging, Department of Clinical Genetics, Vrije Universiteit Amsterdam, Amsterdam UMC, Amsterdam, The Netherlands.; Delft Bioinformatics Lab, Delft University of Technology, Delft, The Netherlands.
Holstege H; Alzheimer Center Amsterdam, Department of Neurology, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam UMC, Amsterdam, The Netherlands.; Section Genomics of Neurodegenerative Diseases and Aging, Department of Clinical Genetics, Vrije Universiteit Amsterdam, Amsterdam UMC, Amsterdam, The Netherlands.; Delft Bioinformatics Lab, Delft University of Technology, Delft, The Netherlands.
Reinders MJT; Delft Bioinformatics Lab, Delft University of Technology, Delft, The Netherlands.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W603-W612.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Molecular Sequence Annotation*
Polymorphism, Single Nucleotide*
Software*
Alzheimer Disease/genetics ; Gene Expression ; Genetic Association Studies ; Genomics ; Humans ; Linkage Disequilibrium ; Quantitative Trait Loci
Czasopismo naukowe
Tytuł :
MyCLADE: a multi-source domain annotation server for sequence functional exploration.
Autorzy :
Vicedomini R; Sorbonne Université, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), UMR 7238, Paris 75005, France.; Sorbonne Université, CNRS, Institut des Sciences du Calcul et des Données (ISCD), France.
Blachon C; Sorbonne Université, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), UMR 7238, Paris 75005, France.
Oteri F; Sorbonne Université, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), UMR 7238, Paris 75005, France.
Carbone A; Sorbonne Université, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), UMR 7238, Paris 75005, France.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W452-W458.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Molecular Sequence Annotation*
Protein Domains*
Software*
Genomics ; Metagenomics ; Sequence Analysis, Protein/methods ; Staphylococcus aureus/genetics
Czasopismo naukowe
Tytuł :
pLannotate: engineered plasmid annotation.
Autorzy :
McGuffie MJ; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, 2500 Speedway A5000, Austin, TX 78712, USA.
Barrick JE; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, 2500 Speedway A5000, Austin, TX 78712, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W516-W522.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Molecular Sequence Annotation*
Software*
Plasmids/*chemistry
Amino Acyl-tRNA Synthetases/genetics ; Bioengineering ; Databases, Genetic ; Dependovirus/genetics ; Internet
Czasopismo naukowe
Tytuł :
CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems.
Autorzy :
Alkhnbashi OS; Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
Mitrofanov A; Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
Bonidia R; Institute of Mathematics and Computer Sciences, University of São Paulo, São Carlos, SP, Brazil.
Raden M; Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
Tran VD; Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
Eggenhofer F; Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
Shah SA; Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Denmark.
Öztürk E; Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
Padilha VA; Institute of Mathematics and Computer Sciences, University of São Paulo, São Carlos, SP, Brazil.
Sanches DS; Universidade Tecnológica Federal do Paraná, Campus Cornélio Procópio, 86300000 Cornélio Procópio, PR, Brazil.
de Carvalho ACPLF; Institute of Mathematics and Computer Sciences, University of São Paulo, São Carlos, SP, Brazil.
Backofen R; Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.; Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Schaenzlestr. 18, 79104 Freiburg, Germany.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W125-W130.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
CRISPR-Cas Systems*
Clustered Regularly Interspaced Short Palindromic Repeats*
Molecular Sequence Annotation*
Software*
CRISPR-Associated Proteins/classification ; CRISPR-Associated Proteins/genetics ; Machine Learning
Czasopismo naukowe
Tytuł :
Functional annotation of the 2q35 breast cancer risk locus implicates a structural variant in influencing activity of a long-range enhancer element.
Autorzy :
Baxter JS; The Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London SW7 3RP, UK. Electronic address: .
Johnson N; The Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London SW7 3RP, UK.
Tomczyk K; The Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London SW7 3RP, UK.
Gillespie A; The Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London SW7 3RP, UK.
Maguire S; Centre for Cancer Research and Cell Biology, Queen's University Belfast, Belfast, Ireland BT7 1NN, UK.
Brough R; The Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London SW7 3RP, UK; The CRUK Gene Function Laboratory, The Institute of Cancer Research, London SW3 6JB, UK.
Fachal L; Centre for Cancer Genetic Epidemiology, Department of Oncology, University of Cambridge, Cambridge CB1 8RN, UK.
Michailidou K; Biostatistics Unit, The Cyprus Institute of Neurology & Genetics, Nicosia 2371, Cyprus; Cyprus School of Molecular Medicine, The Cyprus Institute of Neurology & Genetics, Nicosia 2371, Cyprus; Centre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK.
Bolla MK; Centre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK.
Wang Q; Centre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK.
Dennis J; Centre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK.
Ahearn TU; Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Bethesda, MD 20850, USA.
Andrulis IL; Fred A. Litwin Center for Cancer Genetics, Lunenfeld-Tanenbaum Research Institute of Mount Sinai Hospital, Toronto, ON M5G 1X5, Canada; Department of Molecular Genetics, University of Toronto, Toronto, ON M5S 1A8, Canada.
Anton-Culver H; Department of Medicine, Genetic Epidemiology Research Institute, University of California Irvine, Irvine, CA 92617, USA.
Antonenkova NN; N.N. Alexandrov Research Institute of Oncology and Medical Radiology, Minsk 223040, Belarus.
Arndt V; Division of Clinical Epidemiology and Aging Research, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany.
Aronson KJ; Department of Public Health Sciences, and Cancer Research Institute, Queen's University, Kingston, ON K7L 3N6, Canada.
Augustinsson A; Department of Cancer Epidemiology, Clinical Sciences, Lund University, Lund 222 42, Sweden.
Becher H; Institute of Medical Biometry and Epidemiology, University Medical Center Hamburg-Eppendorf, Hamburg 20246, Germany.
Beckmann MW; Department of Gynecology and Obstetrics, Comprehensive Cancer Center Erlangen-EMN, University Hospital Erlangen, Friedrich-Alexander-University Erlangen-Nuremberg (FAU), Erlangen 91054, Germany.
Behrens S; Division of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany.
Benitez J; Biomedical Network on Rare Diseases (CIBERER), Madrid 28029, Spain; Human Cancer Genetics Programme, Spanish National Cancer Research Centre (CNIO), Madrid 28029, Spain.
Bermisheva M; Institute of Biochemistry and Genetics, Ufa Federal Research Centre of the Russian Academy of Sciences, Ufa 450054, Russia.
Bogdanova NV; N.N. Alexandrov Research Institute of Oncology and Medical Radiology, Minsk 223040, Belarus; Department of Radiation Oncology, Hannover Medical School, Hannover 30625, Germany; Gynaecology Research Unit, Hannover Medical School, Hannover 30625, Germany.
Bojesen SE; Copenhagen General Population Study, Herlev and Gentofte Hospital, Copenhagen University Hospital, Herlev 2730, Denmark; Department of Clinical Biochemistry, Herlev and Gentofte Hospital, Copenhagen University Hospital, Herlev 2730, Denmark; Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen 2200, Denmark.
Brenner H; Division of Clinical Epidemiology and Aging Research, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany; Division of Preventive Oncology, German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT), Heidelberg 69120, Germany; German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), Heidelberg 69120, Germany.
Brucker SY; Department of Gynecology and Obstetrics, University of Tübingen, Tübingen 72076, Germany.
Cai Q; Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Campa D; Division of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany; Department of Biology, University of Pisa, Pisa 56126, Italy.
Canzian F; Genomic Epidemiology Group, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany.
Castelao JE; Oncology and Genetics Unit, Instituto de Investigación Sanitaria Galicia Sur (IISGS), Xerencia de Xestion Integrada de Vigo-SERGAS, Vigo 36312, Spain.
Chan TL; Hong Kong Hereditary Breast Cancer Family Registry, Hong Kong; Department of Molecular Pathology, Hong Kong Sanatorium and Hospital, Hong Kong.
Chang-Claude J; Division of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany; Cancer Epidemiology Group, University Cancer Center Hamburg (UCCH), University Medical Center Hamburg-Eppendorf, Hamburg 20246, Germany.
Chanock SJ; Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Bethesda, MD 20850, USA.
Chenevix-Trench G; Department of Genetics and Computational Biology, QIMR Berghofer Medical Research Institute, Brisbane, QLD 4006, Australia.
Choi JY; Department of Biomedical Sciences, Seoul National University Graduate School, Seoul 03080, Korea; Cancer Research Institute, Seoul National University, Seoul 03080, Korea; Institute of Health Policy and Management, Seoul National University Medical Research Center, Seoul 03080, Korea.
Clarke CL; Westmead Institute for Medical Research, University of Sydney, Sydney, NSW 2145, Australia.
Colonna S; Department of Medicine, Huntsman Cancer Institute, Salt Lake City, UT 84112, USA.
Conroy DM; Centre for Cancer Genetic Epidemiology, Department of Oncology, University of Cambridge, Cambridge CB1 8RN, UK.
Couch FJ; Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA.
Cox A; Sheffield Institute for Nucleic Acids (SInFoNiA), Department of Oncology and Metabolism, University of Sheffield, Sheffield S10 2TN, UK.
Cross SS; Academic Unit of Pathology, Department of Neuroscience, University of Sheffield, Sheffield S10 2TN, UK.
Czene K; Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm 171 65, Sweden.
Daly MB; Department of Clinical Genetics, Fox Chase Cancer Center, Philadelphia, PA 19111, USA.
Devilee P; Department of Pathology, Leiden University Medical Center, Leiden 2333 ZA, the Netherlands; Department of Human Genetics, Leiden University Medical Center, Leiden 2333 ZA, the Netherlands.
Dörk T; Gynaecology Research Unit, Hannover Medical School, Hannover 30625, Germany.
Dossus L; Nutrition and Metabolism Section, International Agency for Research on Cancer (IARC-WHO), Lyon 69372, France.
Dwek M; School of Life Sciences, University of Westminster, London W1B 2HW, UK.
Eccles DM; Faculty of Medicine, University of Southampton, Southampton SO17 1BJ, UK.
Ekici AB; Institute of Human Genetics, University Hospital Erlangen, Friedrich-Alexander University Erlangen-Nuremberg, Comprehensive Cancer Center Erlangen-EMN, Erlangen 91054, Germany.
Eliassen AH; Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA.
Engel C; Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig 04107, Germany; LIFE - Leipzig Research Centre for Civilization Diseases, University of Leipzig, Leipzig 04103, Germany.
Fasching PA; Department of Gynecology and Obstetrics, Comprehensive Cancer Center Erlangen-EMN, University Hospital Erlangen, Friedrich-Alexander-University Erlangen-Nuremberg (FAU), Erlangen 91054, Germany; David Geffen School of Medicine, Department of Medicine Division of Hematology and Oncology, University of California at Los Angeles, Los Angeles, CA 90095, USA.
Figueroa J; Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Bethesda, MD 20850, USA; Usher Institute of Population Health Sciences and Informatics, The University of Edinburgh, Edinburgh EH16 4UX, UK; Cancer Research UK Edinburgh Centre, The University of Edinburgh, Edinburgh EH4 2XR, UK.
Flyger H; Department of Breast Surgery, Herlev and Gentofte Hospital, Copenhagen University Hospital, Herlev 2730, Denmark.
Gago-Dominguez M; Fundación Pública Galega de Medicina Xenómica, Instituto de Investigación Sanitaria de Santiago de Compostela (IDIS), Complejo Hospitalario Universitario de Santiago, SERGAS, Santiago de Compostela 15706, Spain; Moores Cancer Center, University of California San Diego, La Jolla, CA 92037, USA.
Gao C; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA; Program in Genetic Epidemiology and Statistical Genetics, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA.
García-Closas M; Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Bethesda, MD 20850, USA.
García-Sáenz JA; Medical Oncology Department, Hospital Clínico San Carlos, Instituto de Investigación Sanitaria San Carlos (IdISSC), Centro Investigación Biomédica en Red de Cáncer (CIBERONC), Madrid 28040, Spain.
Ghoussaini M; Centre for Cancer Genetic Epidemiology, Department of Oncology, University of Cambridge, Cambridge CB1 8RN, UK; Open Targets, Core Genetics Team, Wellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
Giles GG; Cancer Epidemiology Division, Cancer Council Victoria, Melbourne, VIC 3004, Australia; Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne, VIC 3010, Australia; Precision Medicine, School of Clinical Sciences at Monash Health, Monash University, Clayton, VIC 3168, Australia.
Goldberg MS; Department of Medicine, McGill University, Montréal, QC H4A 3J1, Canada; Division of Clinical Epidemiology, Royal Victoria Hospital, McGill University, Montréal, QC H4A 3J1, Canada.
González-Neira A; Human Cancer Genetics Programme, Spanish National Cancer Research Centre (CNIO), Madrid 28029, Spain.
Guénel P; Center for Research in Epidemiology and Population Health (CESP), Team Exposome and Heredity, INSERM, University Paris-Saclay, Villejuif 94805, France.
Gündert M; Molecular Epidemiology Group, C080, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany; Molecular Biology of Breast Cancer, University Womens Clinic Heidelberg, University of Heidelberg, Heidelberg 69120, Germany; Institute of Diabetes Research, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg 85764, Germany.
Haeberle L; Department of Gynecology and Obstetrics, Comprehensive Cancer Center Erlangen-EMN, University Hospital Erlangen, Friedrich-Alexander-University Erlangen-Nuremberg (FAU), Erlangen 91054, Germany.
Hahnen E; Center for Familial Breast and Ovarian Cancer, Faculty of Medicine and University Hospital Cologne, University of Cologne, Cologne 50937, Germany; Center for Integrated Oncology (CIO), Faculty of Medicine and University Hospital Cologne, University of Cologne, Cologne 50937, Germany.
Haiman CA; Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Hall P; Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm 171 65, Sweden; Department of Oncology, Södersjukhuset, Stockholm 118 83, Sweden.
Hamann U; Molecular Genetics of Breast Cancer, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany.
Hartman M; Saw Swee Hock School of Public Health, National University of Singapore, Singapore 119077, Singapore; Department of Surgery, National University Hospital, Singapore 119228, Singapore; Yong Loo Lin School of Medicine, National University of Singapore, Singapore 119077, Singapore.
Hatse S; Laboratory of Experimental Oncology (LEO), Department of Oncology, KU Leuven, Leuven Cancer Institute, Leuven 3000, Belgium.
Hauke J; Center for Familial Breast and Ovarian Cancer, Faculty of Medicine and University Hospital Cologne, University of Cologne, Cologne 50937, Germany; Center for Integrated Oncology (CIO), Faculty of Medicine and University Hospital Cologne, University of Cologne, Cologne 50937, Germany; Center for Molecular Medicine Cologne (CMMC), Faculty of Medicine and University Hospital Cologne, University of Cologne, Cologne 50931, Germany.
Hollestelle A; Department of Medical Oncology, Erasmus MC Cancer Institute, Rotterdam 3015 GD, the Netherlands.
Hoppe R; Dr. Margarete Fischer-Bosch-Institute of Clinical Pharmacology, Stuttgart 70376, Germany; University of Tübingen, Tübingen 72074, Germany.
Hopper JL; Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne, VIC 3010, Australia.
Hou MF; Department of Surgery, Kaohsiung Municipal Hsiao-Kang Hospital, Kaohsiung 812, Taiwan.
Ito H; Division of Cancer Epidemiology and Prevention, Aichi Cancer Center Research Institute, Nagoya 464-8681, Japan; Division of Cancer Epidemiology, Nagoya University Graduate School of Medicine, Nagoya 466-8550, Japan.
Iwasaki M; Division of Epidemiology, Center for Public Health Sciences, National Cancer Center, Tokyo 104-0045, Japan.
Jager A; Department of Medical Oncology, Erasmus MC Cancer Institute, Rotterdam 3015 GD, the Netherlands.
Jakubowska A; Department of Genetics and Pathology, Pomeranian Medical University, Szczecin 71-252, Poland; Independent Laboratory of Molecular Biology and Genetic Diagnostics, Pomeranian Medical University, Szczecin 71-252, Poland.
Janni W; Department of Gynaecology and Obstetrics, University Hospital Ulm, Ulm 89075, Germany.
John EM; Department of Epidemiology & Population Health, Stanford University School of Medicine, Stanford, CA 94305, USA; Department of Medicine, Division of Oncology, Stanford Cancer Institute, Stanford University School of Medicine, Stanford, CA 94304, USA.
Joseph V; Clinical Genetics Research Lab, Department of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Jung A; Division of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany.
Kaaks R; Division of Cancer Epidemiology, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany.
Kang D; Department of Preventive Medicine, Seoul National University College of Medicine, Seoul 03080, Korea.
Keeman R; Division of Molecular Pathology, the Netherlands Cancer Institute - Antoni van Leeuwenhoek Hospital, Amsterdam 1066 CX, the Netherlands.
Khusnutdinova E; Institute of Biochemistry and Genetics, Ufa Federal Research Centre of the Russian Academy of Sciences, Ufa 450054, Russia; Department of Genetics and Fundamental Medicine, Bashkir State University, Ufa 450000, Russia.
Kim SW; Department of Surgery, Daerim Saint Mary's Hospital, Seoul 07442, Korea.
Kosma VM; Translational Cancer Research Area, University of Eastern Finland, Kuopio 70210, Finland; Institute of Clinical Medicine, Pathology and Forensic Medicine, University of Eastern Finland, Kuopio 70210, Finland; Biobank of Eastern Finland, Kuopio University Hospital, Kuopio, Finland.
Kraft P; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA; Program in Genetic Epidemiology and Statistical Genetics, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA.
Kristensen VN; Institute of Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo 0450, Norway; Department of Medical Genetics, Oslo University Hospital and University of Oslo, Oslo 0379, Norway.
Kubelka-Sabit K; Department of Histopathology and Cytology, Clinical Hospital Acibadem Sistina, Skopje 1000, Republic of North Macedonia.
Kurian AW; Department of Epidemiology & Population Health, Stanford University School of Medicine, Stanford, CA 94305, USA; Department of Medicine, Division of Oncology, Stanford Cancer Institute, Stanford University School of Medicine, Stanford, CA 94304, USA.
Kwong A; Hong Kong Hereditary Breast Cancer Family Registry, Hong Kong; Department of Surgery, The University of Hong Kong, Hong Kong; Department of Surgery and Cancer Genetics Center, Hong Kong Sanatorium and Hospital, Hong Kong.
Lacey JV; Department of Computational and Quantitative Medicine, City of Hope, Duarte, CA 91010, USA; City of Hope Comprehensive Cancer Center, City of Hope, Duarte, CA 91010, USA.
Lambrechts D; VIB Center for Cancer Biology, Leuven 3001, Belgium; Laboratory for Translational Genetics, Department of Human Genetics, University of Leuven, Leuven 3000, Belgium.
Larson NL; Department of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.
Larsson SC; Institute of Environmental Medicine, Karolinska Institutet, Stockholm 171 77, Sweden; Department of Surgical Sciences, Uppsala University, Uppsala 751 05, Sweden.
Le Marchand L; Epidemiology Program, University of Hawaii Cancer Center, Honolulu, HI 96813, USA.
Lejbkowicz F; Clalit National Cancer Control Center, Carmel Medical Center and Technion Faculty of Medicine, Haifa 35254, Israel.
Li J; Yong Loo Lin School of Medicine, National University of Singapore, Singapore 119077, Singapore; Human Genetics Division, Genome Institute of Singapore, Singapore 138672, Singapore.
Long J; Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Lophatananon A; Division of Population Health, Health Services Research and Primary Care, School of Health Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester M13 9PL, UK.
Lubiński J; Department of Genetics and Pathology, Pomeranian Medical University, Szczecin 71-252, Poland.
Mannermaa A; Translational Cancer Research Area, University of Eastern Finland, Kuopio 70210, Finland; Institute of Clinical Medicine, Pathology and Forensic Medicine, University of Eastern Finland, Kuopio 70210, Finland; Biobank of Eastern Finland, Kuopio University Hospital, Kuopio, Finland.
Manoochehri M; Molecular Genetics of Breast Cancer, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany.
Manoukian S; Unit of Medical Genetics, Department of Medical Oncology and Hematology, Fondazione IRCCS Istituto Nazionale dei Tumori di Milano, Milan 20133, Italy.
Margolin S; Department of Oncology, Södersjukhuset, Stockholm 118 83, Sweden; Department of Clinical Science and Education, Södersjukhuset, Karolinska Institutet, Stockholm 118 83, Sweden.
Matsuo K; Division of Cancer Epidemiology and Prevention, Aichi Cancer Center Research Institute, Nagoya 464-8681, Japan; Division of Cancer Epidemiology, Nagoya University Graduate School of Medicine, Nagoya 466-8550, Japan.
Mavroudis D; Department of Medical Oncology, University Hospital of Heraklion, Heraklion 711 10, Greece.
Mayes R; Centre for Cancer Genetic Epidemiology, Department of Oncology, University of Cambridge, Cambridge CB1 8RN, UK.
Menon U; Institute of Clinical Trials & Methodology, University College London, London WC1V 6LJ, UK.
Milne RL; Cancer Epidemiology Division, Cancer Council Victoria, Melbourne, VIC 3004, Australia; Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne, VIC 3010, Australia; Precision Medicine, School of Clinical Sciences at Monash Health, Monash University, Clayton, VIC 3168, Australia.
Mohd Taib NA; Breast Cancer Research Unit, University Malaya Cancer Research Institute, Faculty of Medicine, University of Malaya, Kuala Lumpur 50603, Malaysia.
Muir K; Division of Population Health, Health Services Research and Primary Care, School of Health Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester M13 9PL, UK.
Muranen TA; Department of Obstetrics and Gynecology, Helsinki University Hospital, University of Helsinki, Helsinki 00290, Finland.
Murphy RA; School of Population and Public Health, University of British Columbia, Vancouver, BC V6T 1Z4, Canada; Cancer Control Research, BC Cancer, Vancouver, BC V5Z 1L3, Canada.
Nevanlinna H; Department of Obstetrics and Gynecology, Helsinki University Hospital, University of Helsinki, Helsinki 00290, Finland.
O'Brien KM; Epidemiology Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC 27709, USA.
Offit K; Clinical Genetics Research Lab, Department of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Clinical Genetics Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Olson JE; Department of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.
Olsson H; Department of Cancer Epidemiology, Clinical Sciences, Lund University, Lund 222 42, Sweden.
Park SK; Cancer Research Institute, Seoul National University, Seoul 03080, Korea; Department of Preventive Medicine, Seoul National University College of Medicine, Seoul 03080, Korea; Convergence Graduate Program in Innovative Medical Science, Seoul National University College of Medicine, Seoul 03080, Korea.
Park-Simon TW; Gynaecology Research Unit, Hannover Medical School, Hannover 30625, Germany.
Patel AV; Department of Population Science, American Cancer Society, Atlanta, GA 30303, USA.
Peterlongo P; Genome Diagnostics Program, IFOM - the FIRC Institute of Molecular Oncology, Milan 20139, Italy.
Peto J; Department of Non-Communicable Disease Epidemiology, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK.
Plaseska-Karanfilska D; Research Centre for Genetic Engineering and Biotechnology 'Georgi D. Efremov', MASA, Skopje 1000, Republic of North Macedonia.
Presneau N; School of Life Sciences, University of Westminster, London W1B 2HW, UK.
Pylkäs K; Laboratory of Cancer Genetics and Tumor Biology, Cancer and Translational Medicine Research Unit, Biocenter Oulu, University of Oulu, Oulu 90570, Finland; Laboratory of Cancer Genetics and Tumor Biology, Northern Finland Laboratory Centre Oulu, Oulu 90570, Finland.
Rack B; Department of Gynaecology and Obstetrics, University Hospital Ulm, Ulm 89075, Germany.
Rennert G; Clalit National Cancer Control Center, Carmel Medical Center and Technion Faculty of Medicine, Haifa 35254, Israel.
Romero A; Medical Oncology Department, Hospital Universitario Puerta de Hierro, Madrid 28222, Spain.
Ruebner M; Department of Gynecology and Obstetrics, Comprehensive Cancer Center Erlangen-EMN, University Hospital Erlangen, Friedrich-Alexander-University Erlangen-Nuremberg (FAU), Erlangen 91054, Germany.
Rüdiger T; Institute of Pathology, Staedtisches Klinikum Karlsruhe, Karlsruhe 76133, Germany.
Saloustros E; Department of Oncology, University Hospital of Larissa, Larissa 411 10, Greece.
Sandler DP; Epidemiology Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC 27709, USA.
Sawyer EJ; School of Cancer & Pharmaceutical Sciences, Comprehensive Cancer Centre, Guy's Campus, King's College London, London, UK.
Schmidt MK; Division of Molecular Pathology, the Netherlands Cancer Institute - Antoni van Leeuwenhoek Hospital, Amsterdam 1066 CX, the Netherlands; Division of Psychosocial Research and Epidemiology, the Netherlands Cancer Institute - Antoni van Leeuwenhoek hospital, Amsterdam 1066 CX, the Netherlands.
Schmutzler RK; Center for Familial Breast and Ovarian Cancer, Faculty of Medicine and University Hospital Cologne, University of Cologne, Cologne 50937, Germany; Center for Integrated Oncology (CIO), Faculty of Medicine and University Hospital Cologne, University of Cologne, Cologne 50937, Germany; Center for Molecular Medicine Cologne (CMMC), Faculty of Medicine and University Hospital Cologne, University of Cologne, Cologne 50931, Germany.
Schneeweiss A; Molecular Biology of Breast Cancer, University Womens Clinic Heidelberg, University of Heidelberg, Heidelberg 69120, Germany; National Center for Tumor Diseases, University Hospital and German Cancer Research Center, Heidelberg 69120, Germany.
Schoemaker MJ; Division of Genetics and Epidemiology, The Institute of Cancer Research, London SM2 5NG, UK.
Shah M; Centre for Cancer Genetic Epidemiology, Department of Oncology, University of Cambridge, Cambridge CB1 8RN, UK.
Shen CY; Institute of Biomedical Sciences, Academia Sinica, Taipei 115, Taiwan; School of Public Health, China Medical University, Taichung, Taiwan.
Shu XO; Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Simard J; Genomics Center, Centre Hospitalier Universitaire de Québec - Université Laval Research Center, Québec City, QC G1V 4G2, Canada.
Southey MC; Cancer Epidemiology Division, Cancer Council Victoria, Melbourne, VIC 3004, Australia; Precision Medicine, School of Clinical Sciences at Monash Health, Monash University, Clayton, VIC 3168, Australia; Department of Clinical Pathology, The University of Melbourne, Melbourne, VIC 3010, Australia.
Stone J; Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne, VIC 3010, Australia; Genetic Epidemiology Group, School of Population and Global Health, University of Western Australia, Perth, WA 6000, Australia.
Surowy H; Molecular Epidemiology Group, C080, German Cancer Research Center (DKFZ), Heidelberg 69120, Germany; Molecular Biology of Breast Cancer, University Womens Clinic Heidelberg, University of Heidelberg, Heidelberg 69120, Germany.
Swerdlow AJ; Division of Genetics and Epidemiology, The Institute of Cancer Research, London SM2 5NG, UK; Division of Breast Cancer Research, The Institute of Cancer Research, London SW7 3RP, UK.
Tamimi RM; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA; Department of Population Health Sciences, Weill Cornell Medicine, New York, NY 10065, USA.
Tapper WJ; Faculty of Medicine, University of Southampton, Southampton SO17 1BJ, UK.
Taylor JA; Epidemiology Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC 27709, USA; Epigenetic and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC 27709, USA.
Teo SH; Breast Cancer Research Programme, Cancer Research Malaysia, Subang Jaya, Selangor 47500, Malaysia; Department of Surgery, Faculty of Medicine, University of Malaya, Kuala Lumpur 50603, Malaysia.
Teras LR; Department of Population Science, American Cancer Society, Atlanta, GA 30303, USA.
Terry MB; Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, NY 10032, USA.
Toland AE; Department of Cancer Biology and Genetics, The Ohio State University, Columbus, OH 43210, USA.
Tomlinson I; Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham B15 2TT, UK; Wellcome Trust Centre for Human Genetics and Oxford NIHR Biomedical Research Centre, University of Oxford, Oxford OX3 7BN, UK.
Truong T; Center for Research in Epidemiology and Population Health (CESP), Team Exposome and Heredity, INSERM, University Paris-Saclay, Villejuif 94805, France.
Tseng CC; Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Untch M; Department of Gynecology and Obstetrics, Helios Clinics Berlin-Buch, Berlin 13125, Germany.
Vachon CM; Department of Health Science Research, Division of Epidemiology, Mayo Clinic, Rochester, MN 55905, USA.
van den Ouweland AMW; Department of Clinical Genetics, Erasmus University Medical Center, Rotterdam 3015 GD, the Netherlands.
Wang SS; Department of Computational and Quantitative Medicine, City of Hope, Duarte, CA 91010, USA; City of Hope Comprehensive Cancer Center, City of Hope, Duarte, CA 91010, USA.
Weinberg CR; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC 27709, USA.
Wendt C; Department of Clinical Science and Education, Södersjukhuset, Karolinska Institutet, Stockholm 118 83, Sweden.
Winham SJ; Department of Health Sciences Research, Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN 55905, USA.
Winqvist R; Laboratory of Cancer Genetics and Tumor Biology, Cancer and Translational Medicine Research Unit, Biocenter Oulu, University of Oulu, Oulu 90570, Finland; Laboratory of Cancer Genetics and Tumor Biology, Northern Finland Laboratory Centre Oulu, Oulu 90570, Finland.
Wolk A; Institute of Environmental Medicine, Karolinska Institutet, Stockholm 171 77, Sweden; Department of Surgical Sciences, Uppsala University, Uppsala 751 05, Sweden.
Wu AH; Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Yamaji T; Division of Epidemiology, Center for Public Health Sciences, National Cancer Center, Tokyo 104-0045, Japan.
Zheng W; Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Ziogas A; Department of Medicine, Genetic Epidemiology Research Institute, University of California Irvine, Irvine, CA 92617, USA.
Pharoah PDP; Centre for Cancer Genetic Epidemiology, Department of Oncology, University of Cambridge, Cambridge CB1 8RN, UK; Centre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK.
Dunning AM; Centre for Cancer Genetic Epidemiology, Department of Oncology, University of Cambridge, Cambridge CB1 8RN, UK.
Easton DF; Centre for Cancer Genetic Epidemiology, Department of Oncology, University of Cambridge, Cambridge CB1 8RN, UK; Centre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK.
Pettitt SJ; The Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London SW7 3RP, UK; The CRUK Gene Function Laboratory, The Institute of Cancer Research, London SW3 6JB, UK.
Lord CJ; The Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London SW7 3RP, UK; The CRUK Gene Function Laboratory, The Institute of Cancer Research, London SW3 6JB, UK.
Haider S; The Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London SW7 3RP, UK.
Orr N; Centre for Cancer Research and Cell Biology, Queen's University Belfast, Belfast, Ireland BT7 1NN, UK.
Fletcher O; The Breast Cancer Now Toby Robins Research Centre, The Institute of Cancer Research, London SW7 3RP, UK. Electronic address: .
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Corporate Authors :
NBCS Collaborators; Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital-Radiumhospitalet, Oslo 0379, Norway; Institute of Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo 0450, Norway; Department of Research, Vestre Viken Hospital, Drammen 3019, Norway; Section for Breast and Endocrine Surgery, Department of Cancer, Division of Surgery, Cancer and Transplantation Medicine, Oslo University Hospital-Ullevål, Oslo 0450, Norway; Department of Radiology and Nuclear Medicine, Oslo University Hospital, Oslo 0379, Norway; Department of Pathology, Akershus University Hospital, Lørenskog 1478, Norway; Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Oslo 0379, Norway; Department of Oncology, Division of Surgery, Cancer and Transplantation Medicine, Oslo University Hospital-Radiumhospitalet, Oslo 0379, Norway; National Advisory Unit on Late Effects after Cancer Treatment, Oslo University Hospital-Radiumhospitalet, Oslo 0379, Norway; Department of Oncology, Akershus University Hospital, Lørenskog 1478, Norway; Breast Cancer Research Consortium, Oslo University Hospital, Oslo 0379, Norway.
kConFab Investigators; Research Department, Peter MacCallum Cancer Center, Melbourne, VIC 3000, Australia; Sir Peter MacCallum Department of Oncology, The University of Melbourne, Melbourne, VIC 3000, Australia.
ABCTB Investigators; Australian Breast Cancer Tissue Bank, Westmead Institute for Medical Research, University of Sydney, Sydney, NSW 2145, Australia.
Źródło :
American journal of human genetics [Am J Hum Genet] 2021 Jul 01; Vol. 108 (7), pp. 1190-1203. Date of Electronic Publication: 2021 Jun 18.
Typ publikacji :
Journal Article
MeSH Terms :
Molecular Sequence Annotation*
Promoter Regions, Genetic*
Insulin-Like Growth Factor Binding Protein 5/*genetics
Breast Neoplasms/genetics ; CRISPR-Cas Systems ; Cell Line ; Chromosome Mapping ; Chromosomes, Human, Pair 2 ; Female ; Genetic Association Studies ; Genetic Variation ; Humans ; Risk Factors ; Sequence Deletion
Czasopismo naukowe
Tytuł :
Annotation of snoRNA abundance across human tissues reveals complex snoRNA-host gene relationships.
Autorzy :
Fafard-Couture É; Département de biochimie et de génomique fonctionnelle, Faculté de médecine et des sciences de la santé, Université de Sherbrooke, Sherbrooke, Québec, J1E 4 K8, Canada.
Bergeron D; Département de biochimie et de génomique fonctionnelle, Faculté de médecine et des sciences de la santé, Université de Sherbrooke, Sherbrooke, Québec, J1E 4 K8, Canada.
Couture S; Département de microbiologie et d'infectiologie, Faculté de médecine et des sciences de la santé, Université de Sherbrooke, Sherbrooke, Québec, J1E 4 K8, Canada.
Abou-Elela S; Département de microbiologie et d'infectiologie, Faculté de médecine et des sciences de la santé, Université de Sherbrooke, Sherbrooke, Québec, J1E 4 K8, Canada. .
Scott MS; Département de biochimie et de génomique fonctionnelle, Faculté de médecine et des sciences de la santé, Université de Sherbrooke, Sherbrooke, Québec, J1E 4 K8, Canada. .
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Źródło :
Genome biology [Genome Biol] 2021 Jun 04; Vol. 22 (1), pp. 172. Date of Electronic Publication: 2021 Jun 04.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Molecular Sequence Annotation*
Organ Specificity/*genetics
RNA, Small Nucleolar/*metabolism
Female ; Gene Expression Regulation ; Humans ; Introns/genetics ; Male ; Models, Genetic ; RNA, Small Nucleolar/genetics ; Transcription Initiation, Genetic
Czasopismo naukowe
Tytuł :
KAUST Metagenomic Analysis Platform (KMAP), enabling access to massive analytics of re-annotated metagenomic data.
Autorzy :
Alam I; Computational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia. .
Kamau AA; Computational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
Ngugi DK; Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124, Brunswick, Germany.
Gojobori T; Computational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
Duarte CM; Computational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.; Red Sea Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
Bajic VB; Computational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
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Źródło :
Scientific reports [Sci Rep] 2021 Jun 01; Vol. 11 (1), pp. 11511. Date of Electronic Publication: 2021 Jun 01.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Computational Biology*
Metagenome*
Metagenomics*
Molecular Sequence Annotation*
Software*
Czasopismo naukowe
Tytuł :
Large-Scale Annotation and Evolution Analysis of MiRNA in Insects.
Autorzy :
Ma X; State Key Laboratory of Rice Biology & Ministry of Agriculture and Rural Affairs Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China.; College of Plant Protection, Nanjing Agricultural University, China.
He K; State Key Laboratory of Rice Biology & Ministry of Agriculture and Rural Affairs Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China.
Shi Z; State Key Laboratory of Rice Biology & Ministry of Agriculture and Rural Affairs Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China.
Li M; State Key Laboratory of Rice Biology & Ministry of Agriculture and Rural Affairs Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China.
Li F; State Key Laboratory of Rice Biology & Ministry of Agriculture and Rural Affairs Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China.
Chen XX; State Key Laboratory of Rice Biology & Ministry of Agriculture and Rural Affairs Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China.
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Źródło :
Genome biology and evolution [Genome Biol Evol] 2021 May 07; Vol. 13 (5).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Molecular Sequence Annotation*
Insecta/*genetics
MicroRNAs/*genetics
Animals ; Insecta/classification ; Phylogeny
Czasopismo naukowe
Tytuł :
Improved metagenome binning and assembly using deep variational autoencoders.
Autorzy :
Nissen JN; Department of Health Technology, Technical University of Denmark, Lyngby, Denmark.; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Johansen J; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Allesøe RL; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Sønderby CK; Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Armenteros JJA; Department of Health Technology, Technical University of Denmark, Lyngby, Denmark.
Grønbech CH; Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark.; Department of Applied Mathematics and Computer Science, Technical University of Denmark, Lyngby, Denmark.
Jensen LJ; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Nielsen HB; Clinical-Microbiomics A/S, Copenhagen, Denmark.
Petersen TN; National Food Institute, Technical University of Denmark, Lyngby, Denmark.
Winther O; Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark.; Department of Applied Mathematics and Computer Science, Technical University of Denmark, Lyngby, Denmark.; Center for Genomic Medicine, Copenhagen University Hospital, Copenhagen, Denmark.
Rasmussen S; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark. .
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Źródło :
Nature biotechnology [Nat Biotechnol] 2021 May; Vol. 39 (5), pp. 555-560. Date of Electronic Publication: 2021 Jan 04.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Molecular Sequence Annotation*
Software*
Genome, Bacterial/*genetics
Metagenome/*genetics
Bacteroides/genetics ; Humans ; Metagenomics ; Microbiota/genetics
Czasopismo naukowe
Tytuł :
Novel Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV2) and Other Coronaviruses: A Genome-wide Comparative Annotation and Analysis.
Autorzy :
Tarique M; Center for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, Jamia Nagar, New Delhi, 110025, India. .
Ahmad S; Department of Computer Sciences, Jamia Millia Islamia, New Delhi, 110025, India.
Malik A; Department of Clinical Biochemistry, College of Medicine, King Khalid University, Abha, Saudi Arabia.
Ahmad I; Department of Clinical Laboratory Science, College of Applied Medical Sciences, King Khalid University, Abha, Saudi Arabia.; Research Centre for Advanced Materials Science, King Khalid University, Abha, Saudi Arabia.
Saeed M; Department of Biology College of Sciences, University of Hail, Hail, Saudi Arabia.
Almatroudi A; Department of Medical Laboratories, College of Applied Medical Sciences, Qassim University, Buraydah, 51431, Saudi Arabia.
Qadah T; Department of Medical Laboratory Technology, Faculty of Applied Medical Sciences, King Abdulaziz University, P.O. Box 80324, Postcode 21589, Jeddah, Saudi Arabia.
Murad MA; Department Family Medicine, Faculty of Medicine, King Abdulaziz University, Jeddah, Saudi Arabia.
Mashraqi M; Department of Clinical Laboratory Sciences, College of Applied Medical Science, Najran University, Najran, Saudi Arabia.
Alam Q; Medical Genomics Research Department, King Abdullah International Medical Research Center (KAIMRC), King Saud Bin Abdulaziz University for Health Sciences, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, 11426, Saudi Arabia.
Al-Saleh Y; College of Medicine, King Saud Bin Abdulaziz University for Health Sciences, Riyadh, 22490, Saudi Arabia.; King Abdullah International Medical Research Center, Riyadh, 11481, Saudi Arabia.; Department of Medicine, King Abdulaziz Medical City, Ministry of National Guard-Health Affairs, Riyadh, 14611, Saudi Arabia.
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Źródło :
Molecular and cellular biochemistry [Mol Cell Biochem] 2021 May; Vol. 476 (5), pp. 2203-2217. Date of Electronic Publication: 2021 Feb 10.
Typ publikacji :
Comparative Study; Journal Article
MeSH Terms :
Genome, Viral*
Molecular Sequence Annotation*
Phylogeny*
COVID-19/*genetics
Middle East Respiratory Syndrome Coronavirus/*genetics
RNA, Viral/*genetics
SARS-CoV-2/*genetics
COVID-19/diagnosis ; Genome-Wide Association Study ; Humans
Czasopismo naukowe
Tytuł :
Factors Affecting Migration to GRCh38 in Laboratories Performing Clinical Next-Generation Sequencing.
Autorzy :
Lansdon LA; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Center for Pediatric Genomic Medicine, Children's Mercy-Kansas City, Kansas City, Missouri.
Cadieux-Dion M; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Center for Pediatric Genomic Medicine, Children's Mercy-Kansas City, Kansas City, Missouri.
Yoo B; Center for Pediatric Genomic Medicine, Children's Mercy-Kansas City, Kansas City, Missouri.
Miller N; Center for Pediatric Genomic Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Department of Pathology, School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri.
Cohen ASA; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Center for Pediatric Genomic Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Department of Pathology, School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri.
Zellmer L; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri.
Zhang L; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Department of Pathology, School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri.
Farrow EG; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Center for Pediatric Genomic Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Department of Pathology, School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri; Department of Pediatrics, Children's Mercy-Kansas City, Kansas City, Missouri.
Thiffault I; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Center for Pediatric Genomic Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Department of Pathology, School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri.
Repnikova EA; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Center for Pediatric Genomic Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Department of Pathology, School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri.
Cooley LD; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Department of Pathology, School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri.
Alaimo JT; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Center for Pediatric Genomic Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Department of Pathology, School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri.
Porath B; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Center for Pediatric Genomic Medicine, Children's Mercy-Kansas City, Kansas City, Missouri.
Herriges JC; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Department of Pathology, School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri.
Saunders CJ; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Center for Pediatric Genomic Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Department of Pathology, School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri.
Farooqi MS; Department of Pathology and Laboratory Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Center for Pediatric Genomic Medicine, Children's Mercy-Kansas City, Kansas City, Missouri; Department of Pathology, School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri. Electronic address: .
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Źródło :
The Journal of molecular diagnostics : JMD [J Mol Diagn] 2021 May; Vol. 23 (5), pp. 651-657. Date of Electronic Publication: 2021 Feb 22.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Human*
Molecular Sequence Annotation*
High-Throughput Nucleotide Sequencing/*standards
Laboratories/*standards
Sequence Analysis, DNA/*standards
Data Accuracy ; High-Throughput Nucleotide Sequencing/methods ; Humans ; Reference Values ; Sequence Analysis, DNA/methods
Czasopismo naukowe

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