Temat: "Molecular Sequence Data" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: Relative performance of Bayesian morphological clock and parsimony methods for phylogenetic reconstructions: Insights from the case of Myomiminae and Dryomyinae glirid rodents.
Autorzy:: Dalmasso A; Laboratoire de Paléontologie, Institut des Sciences de l'Évolution (ISE-M, UMR 5554, CNRS/UM/IRD/EPHE), Université de Montpellier, Montpellier, France.
Peláez-Campomanes P; Departamento de Paleobiología, Museo Nacional de Ciencias Naturales-CSIC, Madrid, Spain.
López-Antoñanzas R; Laboratoire de Paléontologie, Institut des Sciences de l'Évolution (ISE-M, UMR 5554, CNRS/UM/IRD/EPHE), Université de Montpellier, Montpellier, France.; Departamento de Paleobiología, Museo Nacional de Ciencias Naturales-CSIC, Madrid, Spain.; Pokaż więcej
Źródło:: Cladistics : the international journal of the Willi Hennig Society [Cladistics] 2022 Dec; Vol. 38 (6), pp. 702-710. Date of Electronic Publication: 2022 Aug 31.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Rodentia*/genetics
Fossils*
Animals ; Phylogeny ; Bayes Theorem ; Molecular Sequence Data

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Skocz do pozycji: 2.

Tytuł:: Impact of molecular sequence data completeness on HIV cluster detection and a network science approach to enhance detection.
Autorzy:: Mazrouee S; Department of Medicine, University of California San Diego, San Diego, CA, USA. .
Hallmark CJ; Houston Health Department, Houston, TX, USA.
Mora R; Houston Health Department, Houston, TX, USA.
Del Vecchio N; Department of Medicine, University of Chicago, Chicago, IL, USA.
Carrasco Hernandez R; Department of Medicine, University of California San Diego, San Diego, CA, USA.; Instituto Nacional de Enfermedades Respiratorias 'Ismael Cosío Villegas', Mexico City, México.
Carr M; Houston Health Department, Houston, TX, USA.
McNeese M; Houston Health Department, Houston, TX, USA.
Fujimoto K; Department of Health Promotion and Behavioral Sciences, The University of Texas Health Science Center at Houston, Houston, TX, USA.
Wertheim JO; Department of Medicine, University of California San Diego, San Diego, CA, USA.; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2022 Nov 10; Vol. 12 (1), pp. 19230. Date of Electronic Publication: 2022 Nov 10.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.
MeSH Terms:: HIV Infections*
Epidemics*
Humans ; Cluster Analysis ; Molecular Epidemiology ; Molecular Sequence Data ; Phylogeny

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Skocz do pozycji: 3.

Tytuł:: Proposal for the Sungminiaceae fam. nov. (Ralfsiales, Phaeophyceae) for Sungminia gen. nov. with three new species based on molecular and morphological analyses.
Autorzy:: Oteng'o AO; Department of Life Science, Chosun University, Gwangju, 61452, Republic of Korea.; Department of Integrative Biological Sciences and BK21 FOUR Educational Research Group for Age-associated Disorder Control Technology, Chosun University, Gwangju, 61452, Republic of Korea.
Won BY; Department of Life Science, Chosun University, Gwangju, 61452, Republic of Korea.
Cho TO; Department of Life Science, Chosun University, Gwangju, 61452, Republic of Korea.; Department of Integrative Biological Sciences and BK21 FOUR Educational Research Group for Age-associated Disorder Control Technology, Chosun University, Gwangju, 61452, Republic of Korea.; Pokaż więcej
Źródło:: Journal of phycology [J Phycol] 2022 Oct; Vol. 58 (5), pp. 719-728. Date of Electronic Publication: 2022 Aug 06.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Phaeophyceae*/genetics
Fatty Acids ; Molecular Sequence Data ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA

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Skocz do pozycji: 4.

Tytuł:: Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data.
Autorzy:: Chiara M; Department of Biosciences, University of Milan, via Celoria 26, 20133 Milan, Italy.; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy.
Zambelli F; Department of Biosciences, University of Milan, via Celoria 26, 20133 Milan, Italy.; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy.
Picardi E; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy.; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari 'A. Moro', Via Orabona 4, 70126 Bari, Italy.
Horner DS; Department of Biosciences, University of Milan, via Celoria 26, 20133 Milan, Italy.; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy.
Pesole G; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy.; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari 'A. Moro', Via Orabona 4, 70126 Bari, Italy.; Pokaż więcej
Źródło:: Briefings in bioinformatics [Brief Bioinform] 2020 Dec 01; Vol. 21 (6), pp. 1971-1986.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Computational Biology*
High-Throughput Nucleotide Sequencing*/methods
Microsatellite Repeats*
Molecular Sequence Data*
Sequence Analysis, DNA*/methods
Alleles ; Chromosome Mapping ; Genome, Human ; Genomics/methods ; Humans ; Reproducibility of Results

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Skocz do pozycji: 5.

Tytuł:: Computational characterization and analysis of molecular sequence data of Elizabethkingia meningoseptica.
Autorzy:: Girdhar N; Department of Bioscience and Biotechnology, Banasthali Vidyapith, Jaipur, 304022, Rajasthan, India.
Kumari N; Department of Bioscience and Biotechnology, Banasthali Vidyapith, Jaipur, 304022, Rajasthan, India.
Krishnamachari A; School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India. .; Pokaż więcej
Źródło:: BMC research notes [BMC Res Notes] 2022 Apr 09; Vol. 15 (1), pp. 133. Date of Electronic Publication: 2022 Apr 09.
Typ publikacji:: Journal Article
MeSH Terms:: Flavobacteriaceae*/genetics
Flavobacteriaceae Infections*/genetics
Anti-Bacterial Agents ; Genome, Bacterial/genetics ; Genomics ; Humans ; Infant, Newborn ; Molecular Sequence Data

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Skocz do pozycji: 6.

Tytuł:: Detecting Selection in the HIV-1 Genome during Sexual Transmission Events.
Autorzy:: Seifert D; Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, 4058 Basel, Switzerland.
Joos B; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, 8091 Zurich, Switzerland.
Braun DL; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, 8091 Zurich, Switzerland.; Institute of Medical Virology, University of Zurich, 8091 Zurich, Switzerland.
Oberle CS; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, 8091 Zurich, Switzerland.; Institute of Medical Virology, University of Zurich, 8091 Zurich, Switzerland.
Schenkel CD; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, 8091 Zurich, Switzerland.; Institute of Medical Virology, University of Zurich, 8091 Zurich, Switzerland.
Kuster H; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, 8091 Zurich, Switzerland.; Institute of Medical Virology, University of Zurich, 8091 Zurich, Switzerland.
Grube C; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, 8091 Zurich, Switzerland.
Böni J; Institute of Medical Virology, University of Zurich, 8091 Zurich, Switzerland.
Yerly S; Laboratory of Virology, University Hospital Geneva, 1205 Geneva, Switzerland.
Aubert V; University Hospital Lausanne, Service of Immunology and Allergy, University Hospital Center, 1011 Lausanne, Switzerland.
Klimkait T; Molecular Virology, Department of Biomedicine-Petersplatz, University of Basel, 4009 Basel, Switzerland.
Günthard HF; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, 8091 Zurich, Switzerland.; Institute of Medical Virology, University of Zurich, 8091 Zurich, Switzerland.
Beerenwinkel N; Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, 4058 Basel, Switzerland.
Metzner KJ; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, 8091 Zurich, Switzerland.; Institute of Medical Virology, University of Zurich, 8091 Zurich, Switzerland.
On Behalf Of The Swiss Hiv Cohort Study; Pokaż więcej
Źródło:: Viruses [Viruses] 2022 Feb 16; Vol. 14 (2). Date of Electronic Publication: 2022 Feb 16.
Typ publikacji:: Journal Article; Observational Study; Research Support, Non-U.S. Gov't
MeSH Terms:: Heterosexuality*
Selection, Genetic*
HIV Infections/*transmission
HIV-1/*genetics
Disease Transmission, Infectious/statistics & numerical data ; Female ; Genetic Variation ; Human Immunodeficiency Virus Proteins/genetics ; Humans ; Male ; Models, Statistical ; Molecular Sequence Data ; Point Mutation

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Skocz do pozycji: 7.

Tytuł:: Oculocutaneous albinism type 1B associated with a functionally significant tyrosinase gene polymorphism detected with Whole Exome Sequencing.
Autorzy:: Mendez R; Centro Nacional de Genética Médica 'Dr. Eduardo E. Castilla', ANLIS, Buenos Aires, Argentina.
Iqbal S; Center for Development of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, Massachusetts, USA.
Vishnopolska S; Universidad de Buenos Aires, Buenos Aires, Argentina.
Martinez C; Centro Nacional de Genética Médica 'Dr. Eduardo E. Castilla', ANLIS, Buenos Aires, Argentina.
Dibner G; Departamento de Oftalmología, Hospital Rivadavia, Buenos Aires, Argentina.
Aliano R; Departamento de Oftalmología, Hospital Rivadavia, Buenos Aires, Argentina.
Zaiat J; Departamento de Química Biológica, Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales (IQUIBICEN) CONICET, Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, Buenos Aires, Argentina.
Biagioli G; Universidad de Buenos Aires, Buenos Aires, Argentina.; Departamento de Bioinformática, Bitgenia, Buenos Aires, Argentina.
Fernandez C; Laboratorio de Genética, Novagen, Buenos Aires, Argentina.
Turjanski A; Departamento de Química Biológica, Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales (IQUIBICEN) CONICET, Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, Buenos Aires, Argentina.
Campbell AJ; Center for Development of Therapeutics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Mercado G; Centro Nacional de Genética Médica 'Dr. Eduardo E. Castilla', ANLIS, Buenos Aires, Argentina.
Marti MA; Universidad de Buenos Aires, Buenos Aires, Argentina.; Pokaż więcej
Źródło:: Ophthalmic genetics [Ophthalmic Genet] 2021 Jun; Vol. 42 (3), pp. 291-295. Date of Electronic Publication: 2021 Feb 18.
Typ publikacji:: Journal Article
MeSH Terms:: Albinism, Oculocutaneous/*genetics
Monophenol Monooxygenase/*genetics
Mutation, Missense/*genetics
Polymorphism, Single Nucleotide/*genetics
Adolescent ; Albinism, Oculocutaneous/diagnosis ; Amino Acid Sequence ; Genetic Association Studies ; Genetic Predisposition to Disease ; Genotype ; Humans ; Male ; Molecular Sequence Data ; Pedigree ; Exome Sequencing
SCR Disease Name:: Oculocutaneous albinism type 1B

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Skocz do pozycji: 8.

Tytuł:: Molecular Mimicry between Betaine Aldehyde Dehydrogenase of Leptospira and Retinal Dehydrogenase 1 of Human Lens: A Potential Trigger for Cataract Formation in Leptospiral Uveitis Patients.
Autorzy:: Rathinam S; Uvea Department, Aravind Eye Hospital, Madurai, India.
Daniel I; Proteomics Department, Aravind Medical Research Foundation, Madurai, India.
Kuppamuthu D; Proteomics Department, Aravind Medical Research Foundation, Madurai, India.
Jayapal JM; Proteomics Department, Aravind Medical Research Foundation, Madurai, India.; Pokaż więcej
Źródło:: Ocular immunology and inflammation [Ocul Immunol Inflamm] 2021 Apr 03; Vol. 29 (3), pp. 579-586. Date of Electronic Publication: 2019 Nov 20.
Typ publikacji:: Comparative Study; Journal Article
MeSH Terms:: Betaine-Aldehyde Dehydrogenase/*immunology
Cataract/*immunology
Lens, Crystalline/*enzymology
Leptospira/*enzymology
Leptospirosis/*immunology
Molecular Mimicry/*physiology
Retinal Dehydrogenase/*immunology
Uveitis/*immunology
Amino Acid Sequence ; Antibodies, Bacterial/blood ; Antigens, Bacterial/immunology ; Cataract/microbiology ; Cross Reactions/immunology ; Electrophoresis, Polyacrylamide Gel ; Enzyme-Linked Immunosorbent Assay ; Eye Infections, Bacterial/immunology ; Eye Infections, Bacterial/microbiology ; Humans ; Immunoblotting ; Leptospirosis/microbiology ; Mass Spectrometry ; Molecular Sequence Data ; Uveitis/microbiology

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Skocz do pozycji: 9.

Tytuł:: Identification and functional analysis of the SARS-COV-2 nucleocapsid protein.
Autorzy:: Gao T; Department of clinical Laboratory, Nanjing First Hospital, Nanjing Medical University, 68 Changle Road, Nanjing, 210006, Jiangsu, China.
Gao Y; Department of clinical Laboratory, Nanjing First Hospital, Nanjing Medical University, 68 Changle Road, Nanjing, 210006, Jiangsu, China.
Liu X; Central Laboratory, Nanjing First Hospital, Nanjing Medical University, 68 Changle Road, Nanjing, 210006, Jiangsu, China.
Nie Z; Department of clinical Laboratory, Nanjing First Hospital, Nanjing Medical University, 68 Changle Road, Nanjing, 210006, Jiangsu, China.
Sun H; Central Laboratory, Nanjing First Hospital, Nanjing Medical University, 68 Changle Road, Nanjing, 210006, Jiangsu, China.
Lin K; Department of clinical Laboratory, Nanjing First Hospital, Nanjing Medical University, 68 Changle Road, Nanjing, 210006, Jiangsu, China.
Peng H; Department of clinical Laboratory, Nanjing First Hospital, Nanjing Medical University, 68 Changle Road, Nanjing, 210006, Jiangsu, China.
Wang S; Department of clinical Laboratory, Nanjing First Hospital, Nanjing Medical University, 68 Changle Road, Nanjing, 210006, Jiangsu, China. sk_.; Central Laboratory, Nanjing First Hospital, Nanjing Medical University, 68 Changle Road, Nanjing, 210006, Jiangsu, China. sk_.; Jiangsu Collaborative Innovation Center on Cancer Personalized Medicine, Nanjing Medical University, 68 Changle Road, Nanjing, 210006, Jiangsu, China. sk_.; Pokaż więcej
Źródło:: BMC microbiology [BMC Microbiol] 2021 Feb 22; Vol. 21 (1), pp. 58. Date of Electronic Publication: 2021 Feb 22.
Typ publikacji:: Journal Article
MeSH Terms:: COVID-19/*virology
Nucleocapsid Proteins/*metabolism
SARS-CoV-2/*metabolism
SARS-CoV-2/*pathogenicity
Amino Acid Sequence ; COVID-19/genetics ; COVID-19/immunology ; Genome, Viral/genetics ; HCT116 Cells ; Humans ; Molecular Sequence Data ; Nucleocapsid Proteins/chemistry ; Nucleocapsid Proteins/genetics ; Phosphorylation ; Reproducibility of Results ; SARS-CoV-2/genetics ; Viral Vaccines/therapeutic use

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Skocz do pozycji: 10.

Tytuł:: A study on the structure, mechanism, and biochemistry of kanamycin B dioxygenase (KanJ)-an enzyme with a broad range of substrates.
Autorzy:: Mrugała B; Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Krakow, Poland.
Miłaczewska A; Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Krakow, Poland.
Porebski PJ; Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Krakow, Poland.; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA.
Niedzialkowska E; Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Krakow, Poland.; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA.
Guzik M; Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Krakow, Poland.
Minor W; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA.
Borowski T; Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Krakow, Poland.; Pokaż więcej
Źródło:: The FEBS journal [FEBS J] 2021 Feb; Vol. 288 (4), pp. 1366-1386. Date of Electronic Publication: 2020 Jul 27.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:: Bacterial Proteins/*metabolism
Dioxygenases/*metabolism
Kanamycin/*analogs & derivatives
Streptomyces/*enzymology
Aminoglycosides/chemistry ; Aminoglycosides/metabolism ; Anti-Bacterial Agents/chemistry ; Anti-Bacterial Agents/metabolism ; Bacterial Proteins/chemistry ; Bacterial Proteins/genetics ; Biocatalysis ; Carbohydrate Sequence ; Catalytic Domain ; Crystallography, X-Ray ; Dioxygenases/chemistry ; Dioxygenases/genetics ; Kanamycin/chemistry ; Kanamycin/metabolism ; Kinetics ; Molecular Dynamics Simulation ; Molecular Sequence Data ; Protein Binding ; Protein Conformation ; Streptomyces/genetics ; Substrate Specificity
SCR Organism:: Streptomyces kanamyceticus

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Skocz do pozycji: 11.

Tytuł:: Mechanistic characterization of UDP-glucuronic acid 4-epimerase.
Autorzy:: Borg AJE; Institute of Biotechnology and Biochemical Engineering, Graz University of Technology, NAWI Graz, Austria.
Dennig A; Institute of Biotechnology and Biochemical Engineering, Graz University of Technology, NAWI Graz, Austria.; Austrian Centre of Industrial Biotechnology, Graz, Austria.
Weber H; Institute of Organic Chemistry, Graz University of Technology, NAWI Graz, Austria.
Nidetzky B; Institute of Biotechnology and Biochemical Engineering, Graz University of Technology, NAWI Graz, Austria.; Austrian Centre of Industrial Biotechnology, Graz, Austria.; Pokaż więcej
Źródło:: The FEBS journal [FEBS J] 2021 Feb; Vol. 288 (4), pp. 1163-1178. Date of Electronic Publication: 2020 Aug 05.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Bacillus cereus/*enzymology
Bacterial Proteins/*metabolism
Racemases and Epimerases/*metabolism
Recombinant Proteins/*metabolism
Uridine Diphosphate Sugars/*metabolism
Bacterial Proteins/genetics ; Biocatalysis ; Carbohydrate Sequence ; Catalytic Domain ; Chromatography, High Pressure Liquid ; Escherichia coli/genetics ; Hydrogen-Ion Concentration ; Kinetics ; Magnetic Resonance Spectroscopy ; Molecular Sequence Data ; Mutant Proteins/metabolism ; Mutation ; Racemases and Epimerases/genetics ; Recombinant Proteins/genetics ; Uridine Diphosphate Sugars/chemistry

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Skocz do pozycji: 12.

Tytuł:: Variation in selection constraints on teleost TLRs with emphasis on their repertoire in the Walking catfish, Clarias batrachus.
Autorzy:: Priyam M; School of Molecular Diagnostics and Prophylactics, ICAR-Indian Institute of Agricultural Biotechnology, Ranchi, Jharkhand, 834 010, India.
Gupta SK; School of Molecular Diagnostics and Prophylactics, ICAR-Indian Institute of Agricultural Biotechnology, Ranchi, Jharkhand, 834 010, India. .
Sarkar B; School of Molecular Diagnostics and Prophylactics, ICAR-Indian Institute of Agricultural Biotechnology, Ranchi, Jharkhand, 834 010, India.
Sharma TR; School of Molecular Diagnostics and Prophylactics, ICAR-Indian Institute of Agricultural Biotechnology, Ranchi, Jharkhand, 834 010, India.
Pattanayak A; School of Molecular Diagnostics and Prophylactics, ICAR-Indian Institute of Agricultural Biotechnology, Ranchi, Jharkhand, 834 010, India.; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2020 Dec 07; Vol. 10 (1), pp. 21394. Date of Electronic Publication: 2020 Dec 07.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Catfishes/*metabolism
Toll-Like Receptors/*chemistry
Toll-Like Receptors/*metabolism
Amino Acid Sequence ; Animals ; Evolution, Molecular ; Molecular Sequence Data ; Phylogeny ; Sequence Homology, Amino Acid

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Skocz do pozycji: 13.

Tytuł:: Analysis of mutations of defensin protein using accelerated molecular dynamics simulations.
Autorzy:: Pandey B; School of Biotechnology, Jawaharlal Nehru University, New Delhi, India.
Tyagi C; Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.
Prajapati GK; Department of Bio-Engineering, Birla Institute of Technology, Mesra, Ranchi, Jharkhand, India.
Mishra AK; Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk, Republic of Korea.
Hashem A; Botany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia.; Mycology and Plant Disease Survey Department, Plant Pathology Research Institute, ARC, Giza, Egypt.
Alqarawi AA; Plant Production Department, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia.
Abd Allah EF; Plant Production Department, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia.
Mohanta TK; Natural and Medical Sciences Research Center, University of Nizwa, Nizwa, Oman.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2020 Nov 30; Vol. 15 (11), pp. e0241679. Date of Electronic Publication: 2020 Nov 30 (Print Publication: 2020).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Molecular Dynamics Simulation*
Defensins/*chemistry
Defensins/*genetics
Amino Acid Sequence ; Deuterium/chemistry ; Molecular Sequence Data ; Mutation/genetics ; Sequence Alignment ; Sequence Homology, Amino Acid

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Skocz do pozycji: 14.

Tytuł:: Beyond thrombosis: the impact of tissue factor signaling in cancer.
Autorzy:: Unruh D; Department of Neurological Surgery, Northwestern University, 303 East Superior St, Chicago, IL, 60611, USA. .
Horbinski C; Department of Neurological Surgery, Northwestern University, 303 East Superior St, Chicago, IL, 60611, USA.; Department of Pathology, Northwestern University, Chicago, IL, 60611, USA.; Pokaż więcej
Źródło:: Journal of hematology & oncology [J Hematol Oncol] 2020 Jul 14; Vol. 13 (1), pp. 93. Date of Electronic Publication: 2020 Jul 14.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Review
MeSH Terms:: Neoplasm Proteins/*physiology
Neoplasms/*blood
Thrombophilia/*blood
Thromboplastin/*physiology
Amino Acid Sequence ; Cell Hypoxia ; Factor VIIa/physiology ; Gene Expression Regulation, Neoplastic ; Humans ; Immunotherapy, Adoptive ; Integrins/metabolism ; Molecular Sequence Data ; Molecular Targeted Therapy ; Neoplasm Invasiveness ; Neoplasm Metastasis ; Neoplasm Proteins/antagonists & inhibitors ; Neoplasms/blood supply ; Neoplasms/physiopathology ; Neoplasms/therapy ; Neoplastic Stem Cells/pathology ; Neovascularization, Pathologic/physiopathology ; Protein Conformation ; Protein Domains ; Protein Isoforms/physiology ; Receptor Protein-Tyrosine Kinases/metabolism ; Receptors, Proteinase-Activated/metabolism ; Signal Transduction/physiology ; Thrombophilia/etiology ; Thromboplastin/antagonists & inhibitors

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Skocz do pozycji: 15.

Tytuł:: ShAn: An easy-to-use tool for interactive and integrated variant annotation.
Autorzy:: Rathinakannan VS; Institute of Biomedicine, University of Turku, Turku, Finland.
Schukov HP; Institute of Biomedicine, University of Turku, Turku, Finland.
Heron S; Institute of Biomedicine, University of Turku, Turku, Finland.
Schleutker J; Institute of Biomedicine, University of Turku, Turku, Finland.; Department of Medical Genetics,Genomics, Division of Laboratory, Turku University Hospital, Turku, Finland.
Sipeky C; Institute of Biomedicine, University of Turku, Turku, Finland.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2020 Jul 07; Vol. 15 (7), pp. e0235669. Date of Electronic Publication: 2020 Jul 07 (Print Publication: 2020).
Typ publikacji:: Comparative Study; Journal Article; Research Support, Non-U.S. Gov't; Validation Study
MeSH Terms:: Software*
Molecular Sequence Annotation/*methods
Databases, Genetic ; Datasets as Topic ; Humans ; Molecular Sequence Data

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Skocz do pozycji: 16.

Tytuł:: Stereoselective Synthesis of Carbon-Sulfur-Bridged Glycomimetics by Photoinitiated Thiol-Ene Coupling Reactions.
Autorzy:: Csávás M; Department of Pharmaceutical Chemistry University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary.
Eszenyi D; Department of Pharmaceutical Chemistry University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary.
Mező E; Department of Pharmaceutical Chemistry University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary.
Lázár L; Department of Organic Chemistry, University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary.
Debreczeni N; Department of Pharmaceutical Chemistry University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary.; Doctoral School of Chemistry, University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary.
Tóth M; Department of Organic Chemistry, University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary.
Somsák L; Department of Organic Chemistry, University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary.
Borbás A; Department of Pharmaceutical Chemistry University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary.; Pokaż więcej
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2020 Jan 16; Vol. 21 (2). Date of Electronic Publication: 2020 Jan 16.
Typ publikacji:: Journal Article
MeSH Terms:: Carbon/*chemistry
Glycosides/*chemical synthesis
Glycosides/*chemistry
Oligosaccharides/*chemical synthesis
Oligosaccharides/*chemistry
Sulfhydryl Compounds/*chemistry
Sulfur/*chemistry
Molecular Sequence Data ; Stereoisomerism

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Skocz do pozycji: 17.

Tytuł:: Structure-based engineering of heparinase I with improved specific activity for degrading heparin.
Autorzy:: Zhang C; Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education & Tianjin Key Lab of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.; State Key Laboratory of Food Nutrition and Safety, Tianjin, 300457, China.
Yang BC; Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education & Tianjin Key Lab of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.; State Key Laboratory of Food Nutrition and Safety, Tianjin, 300457, China.
Liu WT; Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education & Tianjin Key Lab of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.; State Key Laboratory of Food Nutrition and Safety, Tianjin, 300457, China.
Li ZY; Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education & Tianjin Key Lab of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.; State Key Laboratory of Food Nutrition and Safety, Tianjin, 300457, China.
Song YJ; Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education & Tianjin Key Lab of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.; State Key Laboratory of Food Nutrition and Safety, Tianjin, 300457, China.
Zhang TC; Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education & Tianjin Key Lab of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China.; State Key Laboratory of Food Nutrition and Safety, Tianjin, 300457, China.
Luo XG; Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education & Tianjin Key Lab of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, Tianjin, 300457, China. .; State Key Laboratory of Food Nutrition and Safety, Tianjin, 300457, China. .; Pokaż więcej
Źródło:: BMC biotechnology [BMC Biotechnol] 2019 Aug 09; Vol. 19 (1), pp. 59. Date of Electronic Publication: 2019 Aug 09.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Heparin/*metabolism
Heparin Lyase/*metabolism
Amino Acid Sequence ; Calcium/metabolism ; Heparin/chemistry ; Heparin Lyase/chemistry ; Humans ; Hydrogen-Ion Concentration ; Mass Spectrometry ; Molecular Docking Simulation ; Molecular Sequence Data ; Mutagenesis, Site-Directed ; Mutation ; Protein Structure, Secondary ; Temperature

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Skocz do pozycji: 18.

Tytuł:: Retrospective investigation and molecular characteristics of the recombinant Muscovy duck parvovirus circulating in Muscovy duck flocks in China.
Autorzy:: Wang J; a College of Veterinary Medicine , Yangzhou University , Yangzhou , People's Republic of China.; b Jiangsu Co-Innovation Center for Important Animal Infectious Diseases and Zoonosis , Yangzhou , People's Republic of China.; c Jiangsu Key Laboratory of Preventive Veterinary Medicine , Yangzhou , People's Republic of China.; d Key Laboratory for Avian Bioproducts Development , Ministry of Agriculture , Yangzhou , Jiangsu , People's Republic of China.
Wang Z; a College of Veterinary Medicine , Yangzhou University , Yangzhou , People's Republic of China.; b Jiangsu Co-Innovation Center for Important Animal Infectious Diseases and Zoonosis , Yangzhou , People's Republic of China.
Jia J; a College of Veterinary Medicine , Yangzhou University , Yangzhou , People's Republic of China.; b Jiangsu Co-Innovation Center for Important Animal Infectious Diseases and Zoonosis , Yangzhou , People's Republic of China.
Ling J; a College of Veterinary Medicine , Yangzhou University , Yangzhou , People's Republic of China.; b Jiangsu Co-Innovation Center for Important Animal Infectious Diseases and Zoonosis , Yangzhou , People's Republic of China.
Mi Q; a College of Veterinary Medicine , Yangzhou University , Yangzhou , People's Republic of China.; b Jiangsu Co-Innovation Center for Important Animal Infectious Diseases and Zoonosis , Yangzhou , People's Republic of China.
Zhu G; a College of Veterinary Medicine , Yangzhou University , Yangzhou , People's Republic of China.; b Jiangsu Co-Innovation Center for Important Animal Infectious Diseases and Zoonosis , Yangzhou , People's Republic of China.; c Jiangsu Key Laboratory of Preventive Veterinary Medicine , Yangzhou , People's Republic of China.; d Key Laboratory for Avian Bioproducts Development , Ministry of Agriculture , Yangzhou , Jiangsu , People's Republic of China.; Pokaż więcej
Źródło:: Avian pathology : journal of the W.V.P.A [Avian Pathol] 2019 Aug; Vol. 48 (4), pp. 343-351. Date of Electronic Publication: 2019 Apr 30.
Typ publikacji:: Journal Article
MeSH Terms:: Ducks*
Dependovirus/*genetics
Parvoviridae Infections/*veterinary
Poultry Diseases/*virology
Amino Acid Sequence ; Animals ; Base Sequence ; China/epidemiology ; Dependovirus/isolation & purification ; Dependovirus/pathogenicity ; Molecular Sequence Data ; Parvoviridae Infections/epidemiology ; Parvoviridae Infections/virology ; Parvovirus/genetics ; Parvovirus/isolation & purification ; Parvovirus/pathogenicity ; Phylogeny ; Poultry Diseases/epidemiology ; Poultry Diseases/prevention & control ; Random Allocation ; Recombination, Genetic ; Retrospective Studies ; Sequence Alignment/veterinary ; Viral Vaccines/standards

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Skocz do pozycji: 19.

Tytuł:: Targeting Methyltransferases in Human Pathogenic Bacteria: Insights into Thymidylate Synthase (TS) and Flavin-Dependent TS (FDTS).
Autorzy:: Pozzi C; Department of Biotechnology, Chemistry and Pharmacy⁻Department of Excellence 2018-2020, University of Siena, via Aldo Moro 2, 53100 Siena, Italy. .
Lopresti L; Department of Biotechnology, Chemistry and Pharmacy⁻Department of Excellence 2018-2020, University of Siena, via Aldo Moro 2, 53100 Siena, Italy. .
Tassone G; Department of Biotechnology, Chemistry and Pharmacy⁻Department of Excellence 2018-2020, University of Siena, via Aldo Moro 2, 53100 Siena, Italy. .
Mangani S; Department of Biotechnology, Chemistry and Pharmacy⁻Department of Excellence 2018-2020, University of Siena, via Aldo Moro 2, 53100 Siena, Italy. .; Pokaż więcej
Źródło:: Molecules (Basel, Switzerland) [Molecules] 2019 Apr 25; Vol. 24 (8). Date of Electronic Publication: 2019 Apr 25.
Typ publikacji:: Journal Article; Review
MeSH Terms:: Methyltransferases/*metabolism
Thymidylate Synthase/*metabolism
Amino Acid Sequence ; Flavins/metabolism ; Humans ; Molecular Sequence Data ; Protein Structure, Secondary

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Skocz do pozycji: 20.

Tytuł:: Leishmania donovani 90 kD Heat Shock Protein - Impact of Phosphosites on Parasite Fitness, Infectivity and Casein Kinase Affinity.
Autorzy:: Hombach-Barrigah A; Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.
Bartsch K; Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.
Smirlis D; Institut Pasteur and Institut National de Santé et Recherche Médicale INSERM U1201, Unité de Parasitologie Moléculaire et Signalisation, Paris, France.; Hellenic Pasteur Institute, Athens, Greece.
Rosenqvist H; Strathclyde Institute of Pharmacy and Biomedical Sciences (SIPBS) University of Strathclyde, Glasgow, Scotland, UK.; Novo Nordisk A/S, Gentofte, Denmark.
MacDonald A; Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.
Dingli F; Laboratoire de Spectrométrie de Masse Protéomique, Centre de Recherche, Institut Curie, PSL Research University, Paris, France.
Loew D; Laboratoire de Spectrométrie de Masse Protéomique, Centre de Recherche, Institut Curie, PSL Research University, Paris, France.
Späth GF; Institut Pasteur and Institut National de Santé et Recherche Médicale INSERM U1201, Unité de Parasitologie Moléculaire et Signalisation, Paris, France.
Rachidi N; Institut Pasteur and Institut National de Santé et Recherche Médicale INSERM U1201, Unité de Parasitologie Moléculaire et Signalisation, Paris, France.
Wiese M; Strathclyde Institute of Pharmacy and Biomedical Sciences (SIPBS) University of Strathclyde, Glasgow, Scotland, UK.
Clos J; Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2019 Mar 25; Vol. 9 (1), pp. 5074. Date of Electronic Publication: 2019 Mar 25.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Casein Kinases/*metabolism
HSP90 Heat-Shock Proteins/*metabolism
Leishmania donovani/*metabolism
Leishmania donovani/*pathogenicity
Amino Acid Sequence ; Casein Kinases/genetics ; HSP90 Heat-Shock Proteins/genetics ; Leishmania donovani/genetics ; Microscopy, Fluorescence ; Molecular Sequence Data ; Mutagenesis ; Mutation ; Phosphorylation ; Signal Transduction/genetics

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