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Tytuł :
Automated library preparation for whole genome sequencing by centrifugal microfluidics.
Autorzy :
Hess JF; Laboratory for MEMS Applications, IMTEK, University of Freiburg, Georges-Koehler-Allee 103, 79110, Freiburg, Germany; Hahn-Schickard, Georges-Koehler-Allee 103, 79110, Freiburg, Germany. Electronic address: .
Hess ME; Institute of Medical Bioinformatics and Systems Medicine, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Breisacherstr. 153, 79110, Freiburg, Germany; Faculty of Biology, University of Freiburg, Freiburg, Germany.
Zengerle R; Laboratory for MEMS Applications, IMTEK, University of Freiburg, Georges-Koehler-Allee 103, 79110, Freiburg, Germany; Hahn-Schickard, Georges-Koehler-Allee 103, 79110, Freiburg, Germany.
Paust N; Laboratory for MEMS Applications, IMTEK, University of Freiburg, Georges-Koehler-Allee 103, 79110, Freiburg, Germany; Hahn-Schickard, Georges-Koehler-Allee 103, 79110, Freiburg, Germany.
Boerries M; Institute of Medical Bioinformatics and Systems Medicine, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Breisacherstr. 153, 79110, Freiburg, Germany; German Cancer Consortium (DKTK), Partner Site Freiburg and German Cancer Research Center (DKFZ), Heidelberg, Germany.
Hutzenlaub T; Laboratory for MEMS Applications, IMTEK, University of Freiburg, Georges-Koehler-Allee 103, 79110, Freiburg, Germany; Hahn-Schickard, Georges-Koehler-Allee 103, 79110, Freiburg, Germany.
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Źródło :
Analytica chimica acta [Anal Chim Acta] 2021 Oct 16; Vol. 1182, pp. 338954. Date of Electronic Publication: 2021 Aug 16.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Microfluidics*
Gene Library ; Humans ; Sequence Analysis, DNA ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Concatenation of paired-end reads improves taxonomic classification of amplicons for profiling microbial communities.
Autorzy :
Dacey DP; Department of Biological Sciences, University of Massachusetts Lowell, Lowell, MA, USA. .
Chain FJJ; Department of Biological Sciences, University of Massachusetts Lowell, Lowell, MA, USA.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Oct 12; Vol. 22 (1), pp. 493. Date of Electronic Publication: 2021 Oct 12.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Microbiota*/genetics
Computational Biology
Czasopismo naukowe
Tytuł :
Breed-specific reference sequence optimized mapping accuracy of NGS analyses for pigs.
Autorzy :
Wang D; National Engineering Laboratory for Animal Breeding, Ministry of Agricultural Key Laboratory of Animal Genetics, Breeding and Reproduction, College of Animal Science and Technology, China Agricultural University, Beijing, China.; College of Animal Science and Technology, Shandong Agricultural University, Tai'an, China.
Yang L; National Engineering Laboratory for Animal Breeding, Ministry of Agricultural Key Laboratory of Animal Genetics, Breeding and Reproduction, College of Animal Science and Technology, China Agricultural University, Beijing, China.
Ning C; National Engineering Laboratory for Animal Breeding, Ministry of Agricultural Key Laboratory of Animal Genetics, Breeding and Reproduction, College of Animal Science and Technology, China Agricultural University, Beijing, China.; College of Animal Science and Technology, Shandong Agricultural University, Tai'an, China.
Liu JF; National Engineering Laboratory for Animal Breeding, Ministry of Agricultural Key Laboratory of Animal Genetics, Breeding and Reproduction, College of Animal Science and Technology, China Agricultural University, Beijing, China.
Zhao X; National Engineering Laboratory for Animal Breeding, Ministry of Agricultural Key Laboratory of Animal Genetics, Breeding and Reproduction, College of Animal Science and Technology, China Agricultural University, Beijing, China. .
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Źródło :
BMC genomics [BMC Genomics] 2021 Oct 12; Vol. 22 (1), pp. 736. Date of Electronic Publication: 2021 Oct 12.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Polymorphism, Single Nucleotide*
Animals ; DNA, Mitochondrial/genetics ; Sequence Analysis, DNA ; Swine/genetics
Czasopismo naukowe
Tytuł :
Impact of human gene annotations on RNA-seq differential expression analysis.
Autorzy :
Hamaguchi Y; Faculty of Science and Engineering, Waseda University, 55N-06-10, 3-4-1 Okubo Shinjuku-ku, Tokyo, 169-8555, Japan. .
Zeng C; Faculty of Science and Engineering, Waseda University, 55N-06-10, 3-4-1 Okubo Shinjuku-ku, Tokyo, 169-8555, Japan.; AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), 3-4-1, Okubo Shinjuku-ku, Tokyo, 169-8555, Japan.
Hamada M; Faculty of Science and Engineering, Waseda University, 55N-06-10, 3-4-1 Okubo Shinjuku-ku, Tokyo, 169-8555, Japan. .; AIST-Waseda University Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), 3-4-1, Okubo Shinjuku-ku, Tokyo, 169-8555, Japan. .; Institute for Medical-oriented Structural Biology, Waseda University, 2-2, Wakamatsu-cho Shinjuku-ku, Tokyo, 162-8480, Japan. .; Graduate School of Medicine, Nippon Medical School, 1-1-5, Sendagi, Bunkyo-ku, Tokyo, 113-8602, Japan. .
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Źródło :
BMC genomics [BMC Genomics] 2021 Oct 08; Vol. 22 (1), pp. 730. Date of Electronic Publication: 2021 Oct 08.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Human*
High-Throughput Nucleotide Sequencing*
Humans ; Molecular Sequence Annotation ; RNA-Seq ; Whole Exome Sequencing
Czasopismo naukowe
Tytuł :
SamQL: a structured query language and filtering tool for the SAM/BAM file format.
Autorzy :
Lee CT; Laboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD, 21224, USA.
Maragkakis M; Laboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD, 21224, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Oct 02; Vol. 22 (1), pp. 474. Date of Electronic Publication: 2021 Oct 02.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Software*
Genome ; Genomics ; Sequence Alignment
Czasopismo naukowe
Tytuł :
Next-Generation Sequencing and Its Impacts on Entomological Research in Ecology and Evolution.
Autorzy :
Paula DP; Embrapa Genetic Resources and Biotechnology, Brasília, DF, Brazil. .
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Źródło :
Neotropical entomology [Neotrop Entomol] 2021 Oct; Vol. 50 (5), pp. 679-696. Date of Electronic Publication: 2021 Aug 10.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Entomology*/trends
High-Throughput Nucleotide Sequencing*
Animals ; Biodiversity ; Biological Evolution ; Ecology ; Ecosystem ; Insecta
Czasopismo naukowe
Tytuł :
Detecting selection in low-coverage high-throughput sequencing data using principal component analysis.
Autorzy :
Meisner J; Department of Biology, The Bioinformatics Centre, University of Copenhagen, Copenhagen, Denmark.
Albrechtsen A; Department of Biology, The Bioinformatics Centre, University of Copenhagen, Copenhagen, Denmark.
Hanghøj K; Department of Biology, The Bioinformatics Centre, University of Copenhagen, Copenhagen, Denmark. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Sep 29; Vol. 22 (1), pp. 470. Date of Electronic Publication: 2021 Sep 29.
Typ publikacji :
Journal Article
MeSH Terms :
Genetics, Population*
High-Throughput Nucleotide Sequencing*
Genome ; Genotype ; Humans ; Polymorphism, Single Nucleotide ; Principal Component Analysis
Czasopismo naukowe
Tytuł :
CAMPAREE: a robust and configurable RNA expression simulator.
Autorzy :
Lahens NF; The Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Brooks TG; The Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Sarantopoulou D; The Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.; Present address: National Institute on Aging, National Institutes of Health, Baltimore, Maryland, USA.
Nayak S; Statistics and Mathematics Unit, Indian Statistical Institute, Bengaluru, Karnataka, India.
Lawrence C; The Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Mrčela A; The Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Srinivasan A; Perelman School of Medicine, Enterprise Research Applications and High Performance Computing, Penn Medicine Academic Computing Services, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Schug J; The Institute for Diabetes, Obesity and Metabolism, The Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Hogenesch JB; Division of Human Genetics, Department of Pediatrics, Center for Chronobiology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Barash Y; The Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Grant GR; The Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA. .; The Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA. .
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Źródło :
BMC genomics [BMC Genomics] 2021 Sep 25; Vol. 22 (1), pp. 692. Date of Electronic Publication: 2021 Sep 25.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Software*
Algorithms ; Gene Expression Profiling ; RNA/genetics ; Sequence Analysis, RNA
Czasopismo naukowe
Tytuł :
[Monitoring the spread of the SARS-CoV-2 (Coronaviridae: Coronavirinae: Betacoronavirus; Sarbecovirus) variants in the Moscow region using targeted high-throughput sequencing].
Autorzy :
Borisova NI; FSBI «Central Research Institute for Epidemiology» of the Federal Service for Supervision of Consumer Rights Protection and Human Welfare (Rospotrebnadzor).
Kotov IA; FSBI «Central Research Institute for Epidemiology» of the Federal Service for Supervision of Consumer Rights Protection and Human Welfare (Rospotrebnadzor); FSAEI HE «Moscow Institute of Physics and Technology (National Research University)».
Kolesnikov AA; FSBI «Central Research Institute for Epidemiology» of the Federal Service for Supervision of Consumer Rights Protection and Human Welfare (Rospotrebnadzor).
Kaptelova VV; FSBI «Central Research Institute for Epidemiology» of the Federal Service for Supervision of Consumer Rights Protection and Human Welfare (Rospotrebnadzor).
Speranskaya AS; FSBI «Central Research Institute for Epidemiology» of the Federal Service for Supervision of Consumer Rights Protection and Human Welfare (Rospotrebnadzor).
Kondrasheva LY; FSBI «Central Research Institute for Epidemiology» of the Federal Service for Supervision of Consumer Rights Protection and Human Welfare (Rospotrebnadzor).
Tivanova EV; FSBI «Central Research Institute for Epidemiology» of the Federal Service for Supervision of Consumer Rights Protection and Human Welfare (Rospotrebnadzor).
Khafizov KF; FSBI «Central Research Institute for Epidemiology» of the Federal Service for Supervision of Consumer Rights Protection and Human Welfare (Rospotrebnadzor).
Akimkin VG; FSBI «Central Research Institute for Epidemiology» of the Federal Service for Supervision of Consumer Rights Protection and Human Welfare (Rospotrebnadzor).
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Źródło :
Voprosy virusologii [Vopr Virusol] 2021 Sep 18; Vol. 66 (4), pp. 269-278. Date of Electronic Publication: 2021 Sep 18.
Typ publikacji :
Journal Article
MeSH Terms :
COVID-19*/diagnosis
COVID-19*/epidemiology
COVID-19*/genetics
COVID-19*/transmission
COVID-19 Nucleic Acid Testing*
High-Throughput Nucleotide Sequencing*
Reverse Transcriptase Polymerase Chain Reaction*
SARS-CoV-2/*genetics
Female ; Humans ; Male ; Moscow/epidemiology
SCR Organism :
SARS-CoV-2 variants
Czasopismo naukowe
Tytuł :
High-throughput amplicon sequencing to assess the impact of processing factors on the development of microbial communities during spontaneous meat fermentation.
Autorzy :
Van Reckem E; Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Faculty of Sciences and Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium.
Claeys E; Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Faculty of Sciences and Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium.
Charmpi C; Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Faculty of Sciences and Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium.
Sosa Fajardo A; Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Faculty of Sciences and Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium.
Van der Veken D; Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Faculty of Sciences and Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium.
Maes D; Research Group of Structural Biology Brussels (SBB), Faculty of Sciences and Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium.
Weckx S; Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Faculty of Sciences and Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium.
De Vuyst L; Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Faculty of Sciences and Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium.
Leroy F; Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Faculty of Sciences and Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium. Electronic address: .
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Źródło :
International journal of food microbiology [Int J Food Microbiol] 2021 Sep 16; Vol. 354, pp. 109322. Date of Electronic Publication: 2021 Jul 03.
Typ publikacji :
Journal Article
MeSH Terms :
Fermentation*
Fermented Foods and Beverages*/microbiology
Food Microbiology*
High-Throughput Nucleotide Sequencing*
Meat Products*/microbiology
Microbiota*/genetics
RNA, Ribosomal, 16S/genetics
Czasopismo naukowe
Tytuł :
High contiguity de novo genome assembly and DNA modification analyses for the fungus fly, Sciara coprophila, using single-molecule sequencing.
Autorzy :
Urban JM; Department of Molecular Biology, Cell Biology and Biochemistry, Brown University Division of Biology and Medicine, Sidney Frank Hall for Life Sciences, 185 Meeting Street, Providence, RI, 02912, USA. .; Department of Embryology, Carnegie Institution for Science, Howard Hughes Medical Institute Research Laboratories, 3520 San Martin Drive, Baltimore, MD, 21218, USA. .
Foulk MS; Department of Molecular Biology, Cell Biology and Biochemistry, Brown University Division of Biology and Medicine, Sidney Frank Hall for Life Sciences, 185 Meeting Street, Providence, RI, 02912, USA.; Present Address: Department of Biology, Mercyhurst University, Erie, PA, 16546, USA.
Bliss JE; Department of Molecular Biology, Cell Biology and Biochemistry, Brown University Division of Biology and Medicine, Sidney Frank Hall for Life Sciences, 185 Meeting Street, Providence, RI, 02912, USA.
Coleman CM; KSU Bioinformatics Center, Kansas State University Division of Biology, Ackert Hall, Manhattan, Kansas, 66502, USA.
Lu N; KSU Bioinformatics Center, Kansas State University Division of Biology, Ackert Hall, Manhattan, Kansas, 66502, USA.
Mazloom R; KSU Bioinformatics Center, Kansas State University Division of Biology, Ackert Hall, Manhattan, Kansas, 66502, USA.
Brown SJ; KSU Bioinformatics Center, Kansas State University Division of Biology, Ackert Hall, Manhattan, Kansas, 66502, USA.
Spradling AC; Department of Embryology, Carnegie Institution for Science, Howard Hughes Medical Institute Research Laboratories, 3520 San Martin Drive, Baltimore, MD, 21218, USA.
Gerbi SA; Department of Molecular Biology, Cell Biology and Biochemistry, Brown University Division of Biology and Medicine, Sidney Frank Hall for Life Sciences, 185 Meeting Street, Providence, RI, 02912, USA. .
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Źródło :
BMC genomics [BMC Genomics] 2021 Sep 06; Vol. 22 (1), pp. 643. Date of Electronic Publication: 2021 Sep 06.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
X Chromosome*
DNA ; Female ; Fungi ; Humans ; Male ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
Automation of QIIME2 Metagenomic Analysis Platform.
Autorzy :
Fung C; Des Moines University, College of Osteopathic Medicine, Des Moines, Iowa.
Rusling M; Des Moines University, College of Osteopathic Medicine, Des Moines, Iowa.
Lampeter T; New York Institute of Technology, College of Osteopathic Medicine, Old Westbury, New York.
Love C; Des Moines University, College of Osteopathic Medicine, Des Moines, Iowa.
Karim A; Des Moines University, College of Osteopathic Medicine, Des Moines, Iowa.
Bongiorno C; Des Moines University, College of Osteopathic Medicine, Des Moines, Iowa.
Yuan LL; Des Moines University, College of Osteopathic Medicine, Des Moines, Iowa.; Department of Physiology and Pharmacology, Des Moines University, College of Osteopathic Medicine, Des Moines, Iowa.
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Źródło :
Current protocols [Curr Protoc] 2021 Sep; Vol. 1 (9), pp. e254.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Metagenomics/*methods
Automation ; Cross-Sectional Studies ; Intercellular Signaling Peptides and Proteins ; RNA, Ribosomal, 16S/genetics
Czasopismo naukowe
Tytuł :
[T cell receptor (TCR) repertoire and common analytical tools for high-throughput sequencing].
Autorzy :
Zhang M; Immunology Laboratory, Zunyi Medical University, Zunyi 563000, China.
Li J; Immunology Laboratory, Zunyi Medical University, Zunyi 563000, China.
Shi B; Immunology Laboratory, Zunyi Medical University, Zunyi 563000, China.
Yao X; Immunology Laboratory, Zunyi Medical University, Zunyi 563000, China. *Corresponding author, E-mail: .
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Źródło :
Xi bao yu fen zi mian yi xue za zhi = Chinese journal of cellular and molecular immunology [Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi] 2021 Sep; Vol. 37 (9), pp. 851-857.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Receptors, Antigen, T-Cell*/genetics
Receptors, Antigen, T-Cell, alpha-beta ; T-Lymphocytes
Czasopismo naukowe
Tytuł :
Characterization of the novel HLA-DPB1*1219:01 allele by next-generation sequencing.
Autorzy :
Scherer V; German Red Cross Blood Service Rhineland-Palatinate and Saarland, Bad Kreuznach, Germany.
Flesch BK; German Red Cross Blood Service Rhineland-Palatinate and Saarland, Bad Kreuznach, Germany.
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Źródło :
HLA [HLA] 2021 Sep; Vol. 98 (3), pp. 256-257. Date of Electronic Publication: 2021 Jul 21.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Alleles ; Base Sequence ; HLA-DP beta-Chains ; Humans ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
Novel genetic characteristics of multifocal micronodular pneumocyte hyperplasia (MMPH): a case report with frequent BRAF mutations analyzed by next-generation sequencing supporting benign behaviors of MMPH.
Autorzy :
Inoue C; Department of Anatomic Pathology, Tohoku University School of Medicine, 2-1 Seiryo-machi, Aoba-ku, Sendai, Miyagi, 980-8575, Japan.; Personalized Medical Center, Tohoku University Hospital, Sendai, Miyagi, Japan.
Saito R; Department of Anatomic Pathology, Tohoku University School of Medicine, 2-1 Seiryo-machi, Aoba-ku, Sendai, Miyagi, 980-8575, Japan. .; Department of Pathology, Tohoku University Hospital, Sendai, Miyagi, Japan. .
Kishikawa S; Department of Human Pathology, Juntendo University School of Medicine, Tokyo, Japan.
Hayashi T; Department of Human Pathology, Juntendo University School of Medicine, Tokyo, Japan.
Kumasaka T; Department of Pathology, Japanese Red Cross Medical Center, Tokyo, Japan.
Yamada T; Department of Thoracic Surgery, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Miyagi, Japan.
Oishi H; Department of Thoracic Surgery, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Miyagi, Japan.
Yamazaki Y; Department of Anatomic Pathology, Tohoku University School of Medicine, 2-1 Seiryo-machi, Aoba-ku, Sendai, Miyagi, 980-8575, Japan.
Fujishima F; Department of Pathology, Tohoku University Hospital, Sendai, Miyagi, Japan.
Watanabe M; Department of Pathology, Tohoku University Hospital, Sendai, Miyagi, Japan.
Sasano H; Department of Anatomic Pathology, Tohoku University School of Medicine, 2-1 Seiryo-machi, Aoba-ku, Sendai, Miyagi, 980-8575, Japan.; Department of Pathology, Tohoku University Hospital, Sendai, Miyagi, Japan.
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Źródło :
Virchows Archiv : an international journal of pathology [Virchows Arch] 2021 Sep; Vol. 479 (3), pp. 637-641. Date of Electronic Publication: 2021 Jan 14.
Typ publikacji :
Case Reports
MeSH Terms :
DNA Mutational Analysis*
High-Throughput Nucleotide Sequencing*
Mutation, Missense*
Alveolar Epithelial Cells/*pathology
Lung Diseases/*genetics
Proto-Oncogene Proteins B-raf/*genetics
Tuberous Sclerosis/*genetics
Adult ; Female ; Genetic Predisposition to Disease ; Humans ; Hyperplasia ; Lung Diseases/pathology ; Lung Diseases/surgery ; Lung Transplantation ; Phenotype ; Predictive Value of Tests ; Tuberous Sclerosis/pathology ; Tuberous Sclerosis/surgery
Raport
Tytuł :
Four novel HLA class II alleles identified using next-generation sequencing.
Autorzy :
Gareau A; Histocompatibility and Immunogenetics Laboratory, Alberta Precision Laboratories, Calgary, Alberta, Canada.; Department of Pathology and Laboratory Medicine, University of Calgary, Calgary, Alberta, Canada.
Abu-Khader A; Histocompatibility and Immunogenetics Laboratory, Alberta Precision Laboratories, Calgary, Alberta, Canada.; Department of Pathology and Laboratory Medicine, University of Calgary, Calgary, Alberta, Canada.
Yang G; Histocompatibility and Immunogenetics Laboratory, Alberta Precision Laboratories, Calgary, Alberta, Canada.
Stamm L; Histocompatibility and Immunogenetics Laboratory, Alberta Precision Laboratories, Calgary, Alberta, Canada.
Berka N; Histocompatibility and Immunogenetics Laboratory, Alberta Precision Laboratories, Calgary, Alberta, Canada.; Department of Pathology and Laboratory Medicine, University of Calgary, Calgary, Alberta, Canada.
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Źródło :
HLA [HLA] 2021 Sep; Vol. 98 (3), pp. 233-234. Date of Electronic Publication: 2021 Jun 15.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Organ Transplantation*
Alleles ; HLA Antigens ; Histocompatibility Testing
Czasopismo naukowe
Tytuł :
An Overview of Characteristics of Clinical Next-Generation Sequencing-Based Testing for Hematologic Malignancies.
Autorzy :
Zhang BM; From the Department of Pathology, Stanford University School of Medicine, Stanford, California (Zhang).
Keegan A; The Department of Pathology, Brigham and Women's Hospital, Harvard University, Boston, Massachusetts (Keegan, Lindeman, Kim).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
Li P; ARUP Laboratories, Department of Pathology, University of Utah, Salt Lake City, Utah (Li).
Lindeman NI; The Department of Pathology, Brigham and Women's Hospital, Harvard University, Boston, Massachusetts (Keegan, Lindeman, Kim).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
Nagarajan R; PierianDx, St Louis, Missouri (Nagarajan).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
Routbort MJ; The Department of Hematopathology, The University of Texas MD Anderson Cancer Center, Houston (Routbort).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
Vasalos P; Proficiency Testing, College of American Pathologists, Northfield, Illinois (Vasalos).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
Kim AS; The Department of Pathology, Brigham and Women's Hospital, Harvard University, Boston, Massachusetts (Keegan, Lindeman, Kim).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
Merker JD; The Departments of Pathology and Laboratory Medicine & Genetics, Lineberger Comprehensive Cancer Center, University of North Carolina School of Medicine, Chapel Hill (Merker).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
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Źródło :
Archives of pathology & laboratory medicine [Arch Pathol Lab Med] 2021 Sep 01; Vol. 145 (9), pp. 1110-1116.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Laboratory Proficiency Testing*
Sequence Analysis, DNA*
Hematologic Neoplasms/*genetics
Humans ; Surveys and Questionnaires
Czasopismo naukowe
Tytuł :
GALAXY Workflow for Bacterial Next-Generation Sequencing De Novo Assembly and Annotation.
Autorzy :
Wee SK; Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore.
Yap EPH; Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore.
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Źródło :
Current protocols [Curr Protoc] 2021 Sep; Vol. 1 (9), pp. e242.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Multilocus Sequence Typing ; Reproducibility of Results ; Sequence Analysis, DNA ; Workflow
Czasopismo naukowe
Tytuł :
Characterization of the novel HLA-DQA1*05:13 allele by next-generation sequencing.
Autorzy :
Genebrier S; EFS Bretagne, Laboratoire D'immunogénétique et Histocompatibilité Immunologie Plaquettaire, Rennes, France.; CHU de Rennes, Rennes, France.
Lemal R; CHU de Clermont-Ferrand, Service d'Histocompatibilité et d'Immunogénétique, Clermont-Ferrand, France.; Université Clermont Auvergne, Clermont-Ferrand, France.
Nivet C; EFS Bretagne, Laboratoire D'immunogénétique et Histocompatibilité Immunologie Plaquettaire, Rennes, France.
Chérel M; EFS Bretagne, Laboratoire D'immunogénétique et Histocompatibilité Immunologie Plaquettaire, Rennes, France.
Renac V; EFS Bretagne, Laboratoire D'immunogénétique et Histocompatibilité Immunologie Plaquettaire, Rennes, France.
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Źródło :
HLA [HLA] 2021 Sep; Vol. 98 (3), pp. 241-242. Date of Electronic Publication: 2021 Mar 17.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Alleles ; HLA-DQ alpha-Chains/genetics ; Humans ; Sequence Analysis, DNA
Czasopismo naukowe

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