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Tytuł:
Targeted exome sequencing strategy (NeoEXOME) for Chinese newborns using a pilot study with 3423 neonates.
Autorzy:
Cao Z; Clinical Research Unit, Shanghai Children's Hospital, Shanghai Jiao Tong University Medical School, Shanghai, China.; Institute of Pediatric Infection, Immunity, and Critical Care Medicine, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
He X; Center for Clinical Molecular Laboratory Medicine of Children's Hospital of Chongqing Medical University, Chongqing, China.
Wang D; Center for Clinical Molecular Laboratory Medicine of Children's Hospital of Chongqing Medical University, Chongqing, China.
Gu M; Center of Medical Genetics, Xuzhou Maternal and Child Health Care Hospital, Xuzhou, China.
Suo F; Center of Medical Genetics, Xuzhou Maternal and Child Health Care Hospital, Xuzhou, China.
Qiang R; Center of Medical Genetics, Northwest Women and Children's Hospital, Xi'an, China.
Zhang R; Center of Medical Genetics, Northwest Women and Children's Hospital, Xi'an, China.
Song C; Center of Medical Genetics, Northwest Women and Children's Hospital, Xi'an, China.
Wang X; Center of Medical Genetics, Inner Mongolia Maternal and Child Health Care Hospital, Hohhot, China.
Zhu B; Center of Medical Genetics, Inner Mongolia Maternal and Child Health Care Hospital, Hohhot, China.
Cao D; Medical Genetic Laboratory, Dalian Municipal Women and Children's Medical Center (Group), Dalian, China.; Genetic Laboratory, Shenyang Jinghua Hospital Co., Ltd, Shenyang, China.
Yu H; Medical Genetic Laboratory, Dalian Municipal Women and Children's Medical Center (Group), Dalian, China.
Qu Y; Newborn Screening Center of Children's Hospital of Zhejiang University School of Medicine, Hangzhou, China.
Shen G; Medical Laboratory Center of Huzhou Maternal and Child Health Care Hospital, Huzhou, China.
Wu J; Research and Development Department, MyGenostics Inc., Beijing, China.
Wang P; Research and Development Department, MyGenostics Inc., Beijing, China.
Wang J; Clinical Research Unit, Shanghai Children's Hospital, Shanghai Jiao Tong University Medical School, Shanghai, China.; Institute of Pediatric Infection, Immunity, and Critical Care Medicine, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Zhang H; Clinical Research Unit, Shanghai Children's Hospital, Shanghai Jiao Tong University Medical School, Shanghai, China.; Institute of Pediatric Infection, Immunity, and Critical Care Medicine, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Yan Z; Clinical Research Unit, Shanghai Children's Hospital, Shanghai Jiao Tong University Medical School, Shanghai, China.; Institute of Pediatric Infection, Immunity, and Critical Care Medicine, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Yu G; Clinical Research Unit, Shanghai Children's Hospital, Shanghai Jiao Tong University Medical School, Shanghai, China.; Institute of Pediatric Infection, Immunity, and Critical Care Medicine, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Zou L; Clinical Research Unit, Shanghai Children's Hospital, Shanghai Jiao Tong University Medical School, Shanghai, China.; Institute of Pediatric Infection, Immunity, and Critical Care Medicine, Shanghai Jiao Tong University School of Medicine, Shanghai, China.; Center for Clinical Molecular Laboratory Medicine of Children's Hospital of Chongqing Medical University, Chongqing, China.
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Źródło:
Molecular genetics & genomic medicine [Mol Genet Genomic Med] 2024 Jan; Vol. 12 (1), pp. e2357.
Typ publikacji:
Multicenter Study; Journal Article
MeSH Terms:
Neonatal Screening*/methods
High-Throughput Nucleotide Sequencing*/methods
Humans ; Infant, Newborn ; Pilot Projects ; Exome Sequencing ; Genotype
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
PhytoPipe: a phytosanitary pipeline for plant pathogen detection and diagnosis using RNA-seq data.
Autorzy:
Hu X; United States Department of Agriculture (USDA), Animal and Plant Health Inspection Service (APHIS), Plant Protection and Quarantine (PPQ), Plant Germplasm Quarantine Program (PGQP), Beltsville, MD, USA. .
Hurtado-Gonzales OP; United States Department of Agriculture (USDA), Animal and Plant Health Inspection Service (APHIS), Plant Protection and Quarantine (PPQ), Plant Germplasm Quarantine Program (PGQP), Beltsville, MD, USA.
Adhikari BN; United States Department of Agriculture (USDA), Animal and Plant Health Inspection Service (APHIS), Plant Protection and Quarantine (PPQ), Plant Germplasm Quarantine Program (PGQP), Beltsville, MD, USA.
French-Monar RD; United States Department of Agriculture (USDA), Animal and Plant Health Inspection Service (APHIS), Plant Protection and Quarantine (PPQ), Plant Germplasm Quarantine Program (PGQP), Beltsville, MD, USA.
Malapi M; United States Department of Agriculture (USDA), Animal and Plant Health Inspection Service (APHIS), Plant Protection and Quarantine (PPQ), Plant Germplasm Quarantine Program (PGQP), Beltsville, MD, USA.; American Seed Trade Association (ASTA), Alexandria, VA, USA.
Foster JA; United States Department of Agriculture (USDA), Animal and Plant Health Inspection Service (APHIS), Plant Protection and Quarantine (PPQ), Plant Germplasm Quarantine Program (PGQP), Beltsville, MD, USA.
McFarland CD; USDA-APHIS-PPQ, Field Operations, Raleigh, NC, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Dec 13; Vol. 24 (1), pp. 470. Date of Electronic Publication: 2023 Dec 13.
Typ publikacji:
Journal Article
MeSH Terms:
Computational Biology*
High-Throughput Nucleotide Sequencing*/methods
RNA-Seq ; Software ; Workflow
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Detecting rare thalassemia in children with anemia using third-generation sequencing.
Autorzy:
Ren ZM; Department of Laboratory Medicine, Shenzhen Children´s Hospital, Shenzhen, People's Republic of China.
Li WJ; Department of Laboratory Medicine, Shenzhen Children´s Hospital, Shenzhen, People's Republic of China.
Xing ZH; Department of Laboratory Medicine, Shenzhen Children´s Hospital, Shenzhen, People's Republic of China.
Fu XY; Department of Laboratory Medicine, Shenzhen Children´s Hospital, Shenzhen, People's Republic of China.
Zhang JY; Berry Genomics Corporation, Beijing, People's Republic of China.
Chen YS; Department of Laboratory Medicine, Shenzhen Children´s Hospital, Shenzhen, People's Republic of China.
Li DF; Department of Laboratory Medicine, Shenzhen Children´s Hospital, Shenzhen, People's Republic of China.
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Źródło:
Hematology (Amsterdam, Netherlands) [Hematology] 2023 Dec; Vol. 28 (1), pp. 2241226.
Typ publikacji:
Journal Article
MeSH Terms:
Anemia*/etiology
Anemia*/genetics
Hemoglobins*/genetics
High-Throughput Nucleotide Sequencing*
Thalassemia*/diagnosis
Thalassemia*/genetics
Thalassemia*/therapy
Child ; Humans ; alpha-Thalassemia/diagnosis ; alpha-Thalassemia/genetics ; Asian People ; beta-Thalassemia/diagnosis ; beta-Thalassemia/genetics ; China ; Genotype ; Mutation ; Rare Diseases/diagnosis ; Rare Diseases/genetics ; Blood Transfusion
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Relevance of next generation sequencing (NGS) data re-analysis in the diagnosis of monogenic diseases leading to organ failure.
Autorzy:
Saglia C; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Medical Sciences, University of Turin, Turin, Italy.
Bracciamà V; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Medical Sciences, University of Turin, Turin, Italy.
Trotta L; GenomSys SA, Lausanne, Switzerland.
Mioli F; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Medical Sciences, University of Turin, Turin, Italy.
Faini AC; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Medical Sciences, University of Turin, Turin, Italy.
Brach Del Prever GM; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Medical Sciences, University of Turin, Turin, Italy.
Kalantari S; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Medical Sciences, University of Turin, Turin, Italy.
Luca M; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Medical Sciences, University of Turin, Turin, Italy.
Romeo CM; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Medical Sciences, University of Turin, Turin, Italy.
Scolari C; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Medical Sciences, University of Turin, Turin, Italy.
Peruzzi L; Pediatric Nephrology Dialysis and Transplantation Unit, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.
Calvo PL; Pediatric Gastroenterology Unit, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.
Mussa A; Pediatric Clinical Genetics, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Public Health and Pediatric Sciences, University of Turin, Turin, Italy.
Fenoglio R; Nephrology and Dialysis Unit, Center of Research on Immunopathology and Rare Diseases, CMID, San Giovanni Bosco Hospital, Turin, Italy.; Department of Clinical and Biological Sciences, University of Turin, Turin, Italy.
Roccatello D; Nephrology and Dialysis Unit, Center of Research on Immunopathology and Rare Diseases, CMID, San Giovanni Bosco Hospital, Turin, Italy.; Department of Clinical and Biological Sciences, University of Turin, Turin, Italy.
Alberti C; GenomSys SA, Lausanne, Switzerland.
Carli D; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Medical Sciences, University of Turin, Turin, Italy.
Amoroso A; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Medical Sciences, University of Turin, Turin, Italy.
Deaglio S; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy.; Department of Medical Sciences, University of Turin, Turin, Italy.
Vaisitti T; Immunogenetics and Transplant Biology Service, University Hospital 'Città della Salute e della Scienza di Torino', Turin, Italy. .; Department of Medical Sciences, University of Turin, Turin, Italy. .
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Źródło:
BMC medical genomics [BMC Med Genomics] 2023 Nov 27; Vol. 16 (1), pp. 303. Date of Electronic Publication: 2023 Nov 27.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Genetic Testing*
Humans ; Child ; Exome Sequencing ; Software
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Improved quality metrics for association and reproducibility in chromatin accessibility data using mutual information.
Autorzy:
Roth C; Los Alamos National Laboratory, Genomics and Bioanalytics, Los Alamos, NM, USA. .
Venu V; Los Alamos National Laboratory, Climate, Ecosystems, and Environmental Science, Los Alamos, NM, USA.
Job V; Los Alamos National Laboratory, High Performance Computing and Design, Los Alamos, NM, USA.
Lubbers N; Los Alamos National Laboratory, Information Sciences, Los Alamos, NM, USA.
Sanbonmatsu KY; Los Alamos National Laboratory, Theoretical Biology and Biophysics, Los Alamos, NM, USA.
Steadman CR; Los Alamos National Laboratory, Climate, Ecosystems, and Environmental Science, Los Alamos, NM, USA.
Starkenburg SR; Los Alamos National Laboratory, Genomics and Bioanalytics, Los Alamos, NM, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Nov 22; Vol. 24 (1), pp. 441. Date of Electronic Publication: 2023 Nov 22.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*/genetics
High-Throughput Nucleotide Sequencing*
Humans ; Reproducibility of Results ; Chromatin Immunoprecipitation Sequencing ; Transposases/genetics ; Sequence Analysis, DNA
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Estimating microhaplotype allele frequencies from low-coverage or pooled sequencing data.
Autorzy:
Delomas TA; Agricultural Research Service, United States Department of Agriculture, National Cold Water Marine Aquaculture Center, 483 CBLS, 120 Flagg Road, Kingston, RI, 02881, USA. .
Willis SC; Hagerman Genetics Laboratory, Columbia River Inter-Tribal Fish Commission, Hagerman, ID, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Nov 03; Vol. 24 (1), pp. 415. Date of Electronic Publication: 2023 Nov 03.
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*/methods
Polymorphism, Single Nucleotide*
Gene Frequency ; Whole Genome Sequencing
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Clinical evaluation of metagenomic next-generation sequencing in unbiased pathogen diagnosis of urinary tract infection.
Autorzy:
Wang Y; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing, China.
Chen T; Department of Critical Care Medicine, The Fifth Medical Center of PLA General Hospital, Beijing, China.
Zhang S; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing, China.
Zhang L; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing, China.
Li Q; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing, China.
Lv Q; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing, China.
Kong D; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing, China.
Jiang H; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing, China.
Ren Y; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing, China.
Jiang Y; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing, China.
Li Y; Department of Critical Care Medicine, The Fifth Medical Center of PLA General Hospital, Beijing, China. .
Huang W; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing, China. .
Liu P; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing, China. .
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Źródło:
Journal of translational medicine [J Transl Med] 2023 Oct 27; Vol. 21 (1), pp. 762. Date of Electronic Publication: 2023 Oct 27.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Urinary Tract Infections*/diagnosis
Humans ; Cluster Analysis ; Computational Biology ; Metagenomics ; Sensitivity and Specificity
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Insights into next generation sequencing guided antibody selection strategies.
Autorzy:
Erasmus MF; Specifica LLC, a Q2 Solutions Company, Santa Fe, USA. .
Ferrara F; Specifica LLC, a Q2 Solutions Company, Santa Fe, USA.
D'Angelo S; Specifica LLC, a Q2 Solutions Company, Santa Fe, USA.
Spector L; Specifica LLC, a Q2 Solutions Company, Santa Fe, USA.
Leal-Lopes C; New Mexico Consortium, Los Alamos, USA.
Teixeira AA; New Mexico Consortium, Los Alamos, USA.
Sørensen J; OpenEye, Cadence Molecular Sciences, Santa Fe, USA.
Nagpal S; OpenEye, Cadence Molecular Sciences, Santa Fe, USA.
Perea-Schmittle K; Specifica LLC, a Q2 Solutions Company, Santa Fe, USA.
Choudhary A; Public Health Research Institute, New Jersey Medical School, Rutgers, The State University of New Jersey, Newark, NJ, 07103, USA.
Honnen W; Public Health Research Institute, New Jersey Medical School, Rutgers, The State University of New Jersey, Newark, NJ, 07103, USA.
Calianese D; Public Health Research Institute, New Jersey Medical School, Rutgers, The State University of New Jersey, Newark, NJ, 07103, USA.
Antonio Rodriguez Carnero L; New Mexico Consortium, Los Alamos, USA.
Cocklin S; Specifica LLC, a Q2 Solutions Company, Santa Fe, USA.
Greiff V; University of Oslo, Oslo, Norway.
Pinter A; Public Health Research Institute, New Jersey Medical School, Rutgers, The State University of New Jersey, Newark, NJ, 07103, USA.
Bradbury ARM; Specifica LLC, a Q2 Solutions Company, Santa Fe, USA. .
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Źródło:
Scientific reports [Sci Rep] 2023 Oct 26; Vol. 13 (1), pp. 18370. Date of Electronic Publication: 2023 Oct 26.
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*/methods
Antibodies*/genetics
Epitopes
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Principal Component Analysis of Alternative Splicing Profiles Revealed by Long-Read ONT Sequencing in Human Liver Tissue and Hepatocyte-Derived HepG2 and Huh7 Cell Lines.
Autorzy:
Sarygina E; Institute of Biomedical Chemistry, Pogodinskaya Street 10, 119121 Moscow, Russia.
Kozlova A; Institute of Biomedical Chemistry, Pogodinskaya Street 10, 119121 Moscow, Russia.
Deinichenko K; Institute of Biomedical Chemistry, Pogodinskaya Street 10, 119121 Moscow, Russia.
Radko S; Institute of Biomedical Chemistry, Pogodinskaya Street 10, 119121 Moscow, Russia.
Ptitsyn K; Institute of Biomedical Chemistry, Pogodinskaya Street 10, 119121 Moscow, Russia.
Khmeleva S; Institute of Biomedical Chemistry, Pogodinskaya Street 10, 119121 Moscow, Russia.
Kurbatov LK; Institute of Biomedical Chemistry, Pogodinskaya Street 10, 119121 Moscow, Russia.
Spirin P; Department of Cancer Cell Biology, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilova 32, 119991 Moscow, Russia.
Prassolov VS; Department of Cancer Cell Biology, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilova 32, 119991 Moscow, Russia.
Ilgisonis E; Institute of Biomedical Chemistry, Pogodinskaya Street 10, 119121 Moscow, Russia.
Lisitsa A; Institute of Biomedical Chemistry, Pogodinskaya Street 10, 119121 Moscow, Russia.
Ponomarenko E; Institute of Biomedical Chemistry, Pogodinskaya Street 10, 119121 Moscow, Russia.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2023 Oct 24; Vol. 24 (21). Date of Electronic Publication: 2023 Oct 24.
Typ publikacji:
Journal Article
MeSH Terms:
Alternative Splicing*
High-Throughput Nucleotide Sequencing*/methods
Humans ; Principal Component Analysis ; Gene Expression Profiling/methods ; Transcriptome ; Sequence Analysis, RNA/methods ; Liver ; Protein Isoforms/genetics ; Hepatocytes ; Cell Line
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Case report: isolated prevotella intermedia causing intracranial infection detected using metagenomic next generation sequencing.
Autorzy:
Ye Z; Department of Neurology, Municipal Hospital Affiliated to the Medical School of Taizhou University, Taizhou, Zhejiang Province, China.
He J; Department of Neurology, Municipal Hospital Affiliated to the Medical School of Taizhou University, Taizhou, Zhejiang Province, China.
Ji H; Department of Neurosurgery, Municipal Hospital Affiliated to the Medical School of Taizhou University, No. 381 of East Zhongshan Road, Jiaojiang District, 318000, Taizhou, Zhejiang Province, China.
Xu H; Department of Neurology, Municipal Hospital Affiliated to the Medical School of Taizhou University, Taizhou, Zhejiang Province, China.
Zhang Y; Department of Neurology, Municipal Hospital Affiliated to the Medical School of Taizhou University, Taizhou, Zhejiang Province, China.
Zhou K; Department of Neurosurgery, Municipal Hospital Affiliated to the Medical School of Taizhou University, No. 381 of East Zhongshan Road, Jiaojiang District, 318000, Taizhou, Zhejiang Province, China. .
Liu H; Department of Neurology, Taiyuan Central Hospital, Shanxi Medical University, No.5, Three lanes East Road, Taiyuan, 030000, Shanxi Province, China. hongwei_.
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Źródło:
BMC neurology [BMC Neurol] 2023 Oct 23; Vol. 23 (1), pp. 383. Date of Electronic Publication: 2023 Oct 23.
Typ publikacji:
Case Reports; Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Anti-Bacterial Agents*/therapeutic use
Humans ; Female ; Middle Aged ; Base Composition ; Phylogeny ; Prevotella intermedia/genetics ; RNA, Ribosomal, 16S ; Sequence Analysis, DNA
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
The effect of ascertainment on penetrance estimates for rare variants: Implications for establishing pathogenicity and for genetic counselling.
Autorzy:
Paterson AD; Program in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, Ontario, Canada.; Divisions of Epidemiology and Biostatistics, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada.
Seok SC; Mathematical Medicine LLC, Chicago, IL, United States of America.
Vieland VJ; Mathematical Medicine LLC, Chicago, IL, United States of America.; Departments of Pediatrics and Biostatistics (Emerita), The Ohio State University, Columbus, OH, United States of America.
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Źródło:
PloS one [PLoS One] 2023 Sep 21; Vol. 18 (9), pp. e0290336. Date of Electronic Publication: 2023 Sep 21 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Genetic Counseling*
High-Throughput Nucleotide Sequencing*
Penetrance ; Virulence ; Lod Score
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A simple, single-tube overlapping amplicon-targeted Illumina sequencing assay.
Autorzy:
Limberis JD; Division of Experimental Medicine, University of California, San Francisco, San Francisco, California, United States of America.
Nalyvayko A; Division of Experimental Medicine, University of California, San Francisco, San Francisco, California, United States of America.
Ernst JD; Division of Experimental Medicine, University of California, San Francisco, San Francisco, California, United States of America.
Metcalfe JZ; Division of Pulmonary and Critical Care Medicine, Zuckerberg San Francisco General Hospital and Trauma Centre, University of California, San Francisco, San Francisco, California, United States of America.
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Źródło:
PloS one [PLoS One] 2023 Sep 14; Vol. 18 (9), pp. e0288687. Date of Electronic Publication: 2023 Sep 14 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Biological Assay*
Mutation ; Polymerase Chain Reaction
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A Customized Human Mitochondrial DNA Database (hMITO DB v1.0) for Rapid Sequence Analysis, Haplotyping and Geo-Mapping.
Autorzy:
Shen-Gunther J; Gynecologic Oncology & Clinical Investigation, Department of Clinical Investigation, Brooke Army Medical Center, Fort Sam Houston, San Antonio, TX 78234, USA.
Gunther RS; Nuclear Medicine & Molecular Imaging, Department of Radiology, Brooke Army Medical Center, Fort Sam Houston, San Antonio, TX 78234, USA.
Cai H; Department of Molecular Microbiology and Immunology, University of Texas at San Antonio, San Antonio, TX 78249, USA.; South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX 78249, USA.
Wang Y; Department of Molecular Microbiology and Immunology, University of Texas at San Antonio, San Antonio, TX 78249, USA.; South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX 78249, USA.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2023 Aug 31; Vol. 24 (17). Date of Electronic Publication: 2023 Aug 31.
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*
DNA, Mitochondrial*/genetics
Female ; Humans ; Haplotypes/genetics ; Phylogeny ; Databases, Nucleic Acid
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
The effect of alfalfa cultivation on improving physicochemical properties soil microorganisms community structure of grey desert soil.
Autorzy:
Qi J; College of Animal Science & Technology, Shihezi University, Shihezi, 832003, Xinjiang, China.
Fu D; College of Animal Science & Technology, Shihezi University, Shihezi, 832003, Xinjiang, China.
Wang X; College of Animal Science & Technology, Shihezi University, Shihezi, 832003, Xinjiang, China.
Zhang F; College of Animal Science & Technology, Shihezi University, Shihezi, 832003, Xinjiang, China.
Ma C; College of Animal Science & Technology, Shihezi University, Shihezi, 832003, Xinjiang, China. .
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Źródło:
Scientific reports [Sci Rep] 2023 Aug 23; Vol. 13 (1), pp. 13747. Date of Electronic Publication: 2023 Aug 23.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Medicago sativa*
High-Throughput Nucleotide Sequencing*
Analysis of Variance ; Nitrogen ; Soil
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Investigation of the vaginal microbiota of dairy cows through genetic sequencing of short (Illumina) and long (PacBio) reads and associations with gestational status.
Autorzy:
Souza AK; National Institute of Science and Technology for Dairy Production Chain (INCT-LEITE), Universidade Estadual de Londrina, Londrina, Paraná, Brazil.; Laboratory of Biotechnology of Animal Reproduction, Department of Veterinary Clinics, Center for Agricultural Sciences, Universidade Estadual de Londrina, Londrina, Paraná, Brazil.
Zangirolamo AF; National Institute of Science and Technology for Dairy Production Chain (INCT-LEITE), Universidade Estadual de Londrina, Londrina, Paraná, Brazil.; Laboratory of Biotechnology of Animal Reproduction, Department of Veterinary Clinics, Center for Agricultural Sciences, Universidade Estadual de Londrina, Londrina, Paraná, Brazil.
Droher RG; Laboratory of Biotechnology of Animal Reproduction, Department of Veterinary Clinics, Center for Agricultural Sciences, Universidade Estadual de Londrina, Londrina, Paraná, Brazil.
Bonato FGC; Laboratory of Biotechnology of Animal Reproduction, Department of Veterinary Clinics, Center for Agricultural Sciences, Universidade Estadual de Londrina, Londrina, Paraná, Brazil.
Alfieri AA; National Institute of Science and Technology for Dairy Production Chain (INCT-LEITE), Universidade Estadual de Londrina, Londrina, Paraná, Brazil.
Carvalho da Costa M; Département de Biomédecine Vétérinaire, University of Montreal, Montreal, Canada.
Seneda MM; National Institute of Science and Technology for Dairy Production Chain (INCT-LEITE), Universidade Estadual de Londrina, Londrina, Paraná, Brazil.; Laboratory of Biotechnology of Animal Reproduction, Department of Veterinary Clinics, Center for Agricultural Sciences, Universidade Estadual de Londrina, Londrina, Paraná, Brazil.
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Źródło:
PloS one [PLoS One] 2023 Aug 23; Vol. 18 (8), pp. e0290026. Date of Electronic Publication: 2023 Aug 23 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Microbiota*/genetics
Female ; Pregnancy ; Animals ; Cattle ; RNA, Ribosomal, 16S/genetics ; Databases, Factual ; Fertility
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Comparison of microbial detection rates in microbial culture methods versus next-generation sequencing in patients with prosthetic joint infection: a systematic review and meta-analysis.
Autorzy:
Kato H; Department of Clinical Infectious Diseases, Aichi Medical University, 1-1, Yazakokarimata, Nagakute, Aichi, 480-1195, Japan.; Department of Pharmacy, Mie University Hospital, Mie, Japan.; Division of Clinical Medical Science, Department of Clinical Pharmaceutics, Mie University Graduate School of Medicine, Mie, Japan.
Hagihara M; Department of Clinical Infectious Diseases, Aichi Medical University, 1-1, Yazakokarimata, Nagakute, Aichi, 480-1195, Japan.; Department of Molecular Epidemiology and Biomedical Sciences, Aichi Medical University Hospital, Aichi, Japan.
Asai N; Department of Clinical Infectious Diseases, Aichi Medical University, 1-1, Yazakokarimata, Nagakute, Aichi, 480-1195, Japan.
Umemura T; Department of Clinical Infectious Diseases, Aichi Medical University, 1-1, Yazakokarimata, Nagakute, Aichi, 480-1195, Japan.
Hirai J; Department of Clinical Infectious Diseases, Aichi Medical University, 1-1, Yazakokarimata, Nagakute, Aichi, 480-1195, Japan.
Yamagishi Y; Department of Clinical Infectious Diseases, Aichi Medical University, 1-1, Yazakokarimata, Nagakute, Aichi, 480-1195, Japan.
Iwamoto T; Department of Pharmacy, Mie University Hospital, Mie, Japan.; Division of Clinical Medical Science, Department of Clinical Pharmaceutics, Mie University Graduate School of Medicine, Mie, Japan.
Mikamo H; Department of Clinical Infectious Diseases, Aichi Medical University, 1-1, Yazakokarimata, Nagakute, Aichi, 480-1195, Japan. .
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Źródło:
Journal of orthopaedic surgery and research [J Orthop Surg Res] 2023 Aug 16; Vol. 18 (1), pp. 604. Date of Electronic Publication: 2023 Aug 16.
Typ publikacji:
Meta-Analysis; Systematic Review; Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Arthritis, Infectious*
Humans ; Databases, Factual ; Odds Ratio ; Sonication
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Optimizing an efficient ensemble approach for high-quality de novo transcriptome assembly of Thymus daenensis.
Autorzy:
Ahmadi H; Department of Horticulture Science, Faculty of Agriculture and Natural Sciences, University of Tehran, Karaj, Iran.
Sheikh-Assadi M; Department of Horticulture Science, Faculty of Agriculture and Natural Sciences, University of Tehran, Karaj, Iran.
Fatahi R; Department of Horticulture Science, Faculty of Agriculture and Natural Sciences, University of Tehran, Karaj, Iran. .
Zamani Z; Department of Horticulture Science, Faculty of Agriculture and Natural Sciences, University of Tehran, Karaj, Iran.
Shokrpour M; Department of Horticulture Science, Faculty of Agriculture and Natural Sciences, University of Tehran, Karaj, Iran.
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Źródło:
Scientific reports [Sci Rep] 2023 Jul 31; Vol. 13 (1), pp. 12415. Date of Electronic Publication: 2023 Jul 31.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcriptome*
High-Throughput Nucleotide Sequencing*
Algorithms ; Gene Expression Profiling
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
High incidence of AZF duplications in clan-structured Iranian populations detected through Y chromosome sequencing read depth analysis.
Autorzy:
Hajiesmaeil M; Department of Biology and Biotechnologies 'Charles Darwin', Sapienza University of Rome, P.le Aldo Moro 5, 00185, Rome, Italy.
Ravasini F; Department of Biology and Biotechnologies 'Charles Darwin', Sapienza University of Rome, P.le Aldo Moro 5, 00185, Rome, Italy.
Risi F; Department of Biology and Biotechnologies 'Charles Darwin', Sapienza University of Rome, P.le Aldo Moro 5, 00185, Rome, Italy.
Magnarini G; Department of Biology and Biotechnologies 'Charles Darwin', Sapienza University of Rome, P.le Aldo Moro 5, 00185, Rome, Italy.
Olivieri A; Department of Biology and Biotechnology 'Lazzaro Spallanzani', Pavia University, Pavia, Italy.; NBFC, National Biodiversity Future Center, 90133, Palermo, Italy.
D'Atanasio E; Institute of Molecular Biology and Pathology (IBPM), CNR, 00185, Rome, Italy.
Galehdari H; Department of Biology, Faculty of Sciences, Shahid Chamran University of Ahvaz, Ahvaz, Iran.
Trombetta B; Department of Biology and Biotechnologies 'Charles Darwin', Sapienza University of Rome, P.le Aldo Moro 5, 00185, Rome, Italy.
Cruciani F; Department of Biology and Biotechnologies 'Charles Darwin', Sapienza University of Rome, P.le Aldo Moro 5, 00185, Rome, Italy. .; Institute of Molecular Biology and Pathology (IBPM), CNR, 00185, Rome, Italy. .
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Źródło:
Scientific reports [Sci Rep] 2023 Jul 22; Vol. 13 (1), pp. 11857. Date of Electronic Publication: 2023 Jul 22.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
High-Throughput Nucleotide Sequencing*
Infertility, Male*/genetics
Humans ; Male ; Chromosomes, Human, Y/genetics ; Incidence ; Iran ; Azoospermia/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
MTG-Link: leveraging barcode information from linked-reads to assemble specific loci.
Autorzy:
Guichard A; IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, France. .; Univ Rennes, Inria, CNRS, IRISA, 35000, Rennes, France. .
Legeai F; IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, France.; Univ Rennes, Inria, CNRS, IRISA, 35000, Rennes, France.
Tagu D; IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, France.
Lemaitre C; Univ Rennes, Inria, CNRS, IRISA, 35000, Rennes, France. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Jul 14; Vol. 24 (1), pp. 284. Date of Electronic Publication: 2023 Jul 14.
Typ publikacji:
Journal Article
MeSH Terms:
High-Throughput Nucleotide Sequencing*/methods
Software*
Humans ; Sequence Analysis, DNA/methods ; Genome, Human
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
An optimized GATK4 pipeline for Plasmodium falciparum whole genome sequencing variant calling and analysis.
Autorzy:
Niaré K; Department of Pathology and Laboratory Medicine, Brown University, Providence, RI, USA. karamoko_.; Center for Computational Molecular Biology, Brown University, Providence, RI, USA. karamoko_.
Greenhouse B; EPPIcenter Program, Division of HIV, Infectious Diseases, and Global Medicine, Department of Medicine, University of California San Francisco, San Francisco, CA, USA.
Bailey JA; Department of Pathology and Laboratory Medicine, Brown University, Providence, RI, USA. jeffrey_.; Center for Computational Molecular Biology, Brown University, Providence, RI, USA. jeffrey_.
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Źródło:
Malaria journal [Malar J] 2023 Jul 07; Vol. 22 (1), pp. 207. Date of Electronic Publication: 2023 Jul 07.
Typ publikacji:
Journal Article
MeSH Terms:
Plasmodium falciparum*/genetics
High-Throughput Nucleotide Sequencing*/methods
Whole Genome Sequencing/methods ; Genomics/methods ; Genome ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Wyświetlanie 21-40 z 78593

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