Autor: "Ogrizek M" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: Discovery of (phenylureido)piperidinyl benzamides as prospective inhibitors of bacterial autolysin E from Staphylococcus aureus.
Autorzy:: Borišek J; a National Institute of Chemistry , Ljubljana , Slovenia.
Pintar S; b Department of Biochemistry, Molecular and Structural Biology , Jozef Stefan Institute , Ljubljana , Slovenia.; c Jozef Stefan International Postgraduate School , Ljubljana , Slovenia.
Ogrizek M; a National Institute of Chemistry , Ljubljana , Slovenia.
Grdadolnik SG; a National Institute of Chemistry , Ljubljana , Slovenia.
Hodnik V; d Biotechnical Faculty , Infrastructural Center for Surface Plasmon Resonance , Ljubljana , Slovenia.
Turk D; b Department of Biochemistry, Molecular and Structural Biology , Jozef Stefan Institute , Ljubljana , Slovenia.; e Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins , Ljubljana , Slovenia.
Perdih A; a National Institute of Chemistry , Ljubljana , Slovenia.
Novič M; a National Institute of Chemistry , Ljubljana , Slovenia.; Pokaż więcej
Źródło:: Journal of enzyme inhibition and medicinal chemistry [J Enzyme Inhib Med Chem] 2018 Dec; Vol. 33 (1), pp. 1239-1247.
Typ publikacji:: Journal Article
MeSH Terms:: Drug Discovery*
Anti-Bacterial Agents/*pharmacology
Enzyme Inhibitors/*pharmacology
N-Acetylmuramoyl-L-alanine Amidase/*antagonists & inhibitors
Piperidines/*pharmacology
Staphylococcus aureus/*drug effects
Anti-Bacterial Agents/chemical synthesis ; Anti-Bacterial Agents/chemistry ; Dose-Response Relationship, Drug ; Enzyme Inhibitors/chemical synthesis ; Enzyme Inhibitors/chemistry ; Microbial Sensitivity Tests ; Models, Molecular ; Molecular Structure ; N-Acetylmuramoyl-L-alanine Amidase/chemistry ; N-Acetylmuramoyl-L-alanine Amidase/metabolism ; Piperidines/chemical synthesis ; Piperidines/chemistry ; Staphylococcus aureus/enzymology ; Structure-Activity Relationship

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Skocz do pozycji: 2.

Tytuł:: Role of magnesium ions in the reaction mechanism at the interface between Tm1631 protein and its DNA ligand.
Autorzy:: Ogrizek M; National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana, Slovenia.
Konc J; National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana, Slovenia ; Laboratory for Physical Chemistry and Thermodynamics, Faculty of Chemistry and Chemical Technology, University of Maribor, Smetanova ulica 17, 2000 Maribor, Slovenia ; Faculty of Mathematics, Natural Sciences and Information Technologies, University of Primorska, Glagoljaška 8, 6000 Koper, Slovenia.
Bren U; National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana, Slovenia ; Laboratory for Physical Chemistry and Thermodynamics, Faculty of Chemistry and Chemical Technology, University of Maribor, Smetanova ulica 17, 2000 Maribor, Slovenia ; Faculty of Mathematics, Natural Sciences and Information Technologies, University of Primorska, Glagoljaška 8, 6000 Koper, Slovenia.
Hodošček M; National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana, Slovenia.
Janežič D; Faculty of Mathematics, Natural Sciences and Information Technologies, University of Primorska, Glagoljaška 8, 6000 Koper, Slovenia.; Pokaż więcej
Źródło:: Chemistry Central journal [Chem Cent J] 2016 Jul 08; Vol. 10, pp. 41. Date of Electronic Publication: 2016 Jul 08 (Print Publication: 2016).
Typ publikacji:: Journal Article

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Skocz do pozycji: 3.

Tytuł:: Molecular dynamics to enhance structure-based virtual screening on cathepsin B.
Autorzy:: Ogrizek M; National Institute of Chemistry, Hajdrihova 19, 1000, Ljubljana, Slovenia.
Turk S
Lešnik S
Sosič I
Hodošček M
Mirković B
Kos J
Janežič D
Gobec S
Konc J; Pokaż więcej
Źródło:: Journal of computer-aided molecular design [J Comput Aided Mol Des] 2015 Aug; Vol. 29 (8), pp. 707-12. Date of Electronic Publication: 2015 May 07.
Typ publikacji:: Journal Article
MeSH Terms:: Molecular Dynamics Simulation*
Cathepsin B/*chemistry
Drug Evaluation, Preclinical/*methods
Small Molecule Libraries/*pharmacology
Cathepsin B/metabolism ; Humans ; Molecular Docking Simulation ; Protein Conformation ; ROC Curve ; Small Molecule Libraries/chemistry

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Skocz do pozycji: 4.

Tytuł:: Structure-based function prediction of uncharacterized protein using binding sites comparison.
Autorzy:: Konc J; National Institute of Chemistry, Ljubljana, Slovenia.
Hodošček M
Ogrizek M
Trykowska Konc J
Janežič D; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2013; Vol. 9 (11), pp. e1003341. Date of Electronic Publication: 2013 Nov 14.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Binding Sites*
Bacterial Proteins/*chemistry
Bacterial Proteins/*metabolism
Computational Biology/*methods
Bacterial Proteins/classification ; DNA/chemistry ; DNA/metabolism ; Models, Statistical ; Molecular Dynamics Simulation ; Protein Conformation ; Thermotoga maritima

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