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Tytuł :
Multiple Criteria Optimization (MCO): A gene selection deterministic tool in RStudio.
Autorzy :
Narváez-Bandera I; Bioengineering Graduate Program, The Applied Optimization Group, University of Puerto Rico-Mayagüez, Mayagüez, Puerto Rico.
Suárez-Gómez D; Bioengineering Graduate Program, The Applied Optimization Group, University of Puerto Rico-Mayagüez, Mayagüez, Puerto Rico.
Isaza CE; Bioengineering Graduate Program, The Applied Optimization Group, University of Puerto Rico-Mayagüez, Mayagüez, Puerto Rico.; Public Health Program, Ponce Health Sciences University, Ponce, Puerto Rico.; Basic Sciences Department, Ponce Health Sciences University, Ponce, Puerto Rico.; Biology Department, University of Puerto Rico-Mayagüez, Mayagüez, Puerto Rico.
Cabrera-Ríos M; Bioengineering Graduate Program, The Applied Optimization Group, University of Puerto Rico-Mayagüez, Mayagüez, Puerto Rico.; Industrial Engineering Department, The Applied Optimization Group, University of Puerto Rico-Mayagüez, Mayagüez, Puerto Rico.
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Źródło :
PloS one [PLoS One] 2022 Jan 27; Vol. 17 (1), pp. e0262890. Date of Electronic Publication: 2022 Jan 27 (Print Publication: 2022).
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Algorithms*
Databases, Nucleic Acid*
Gene Expression Profiling*
Oligonucleotide Array Sequence Analysis*
Software*
Humans
Czasopismo naukowe
Tytuł :
A Microarray Analysis Technique Using a Self-Organizing Multiagent Approach.
Autorzy :
Forestiero A; Institute for High Performance Computing and Networking (CNR-ICAR), Rende, CS, Italy. .
Papuzzo G; Institute for High Performance Computing and Networking (CNR-ICAR), Rende, CS, Italy.
De Simone R; Sicur Control System SRL, Rende, CS, Italy.
Varchera R; Sicur Control System SRL, Rende, CS, Italy.
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Źródło :
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2022; Vol. 2401, pp. 39-50.
Typ publikacji :
Journal Article
MeSH Terms :
Oligonucleotide Array Sequence Analysis*
Algorithms ; Semantics
Czasopismo naukowe
Tytuł :
Fabrication and use of silicon hollow-needle arrays to achieve tissue nanotransfection in mouse tissue in vivo.
Autorzy :
Xuan Y; Indiana Center for Regenerative Medicine and Engineering, Indiana University Health Comprehensive Wound Center, Department of Surgery, Indiana University School of Medicine, Indianapolis, IN, USA. .; Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, USA. .
Ghatak S; Indiana Center for Regenerative Medicine and Engineering, Indiana University Health Comprehensive Wound Center, Department of Surgery, Indiana University School of Medicine, Indianapolis, IN, USA.
Clark A; Indiana Center for Regenerative Medicine and Engineering, Indiana University Health Comprehensive Wound Center, Department of Surgery, Indiana University School of Medicine, Indianapolis, IN, USA.
Li Z; Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, USA.
Khanna S; Indiana Center for Regenerative Medicine and Engineering, Indiana University Health Comprehensive Wound Center, Department of Surgery, Indiana University School of Medicine, Indianapolis, IN, USA.
Pak D; Electrical and Computer Engineering, Purdue University, West Lafayette, IN, USA.
Agarwal M; Integrated Nanosystems Development Institute, IUPUI, Indianapolis, IN, USA.
Roy S; Indiana Center for Regenerative Medicine and Engineering, Indiana University Health Comprehensive Wound Center, Department of Surgery, Indiana University School of Medicine, Indianapolis, IN, USA.; Richard L. Roudebush Veterans Administration Medical Center, Indianapolis, IN, USA.
Duda P; Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL, USA.
Sen CK; Indiana Center for Regenerative Medicine and Engineering, Indiana University Health Comprehensive Wound Center, Department of Surgery, Indiana University School of Medicine, Indianapolis, IN, USA. .; Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, USA. .
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Źródło :
Nature protocols [Nat Protoc] 2021 Dec; Vol. 16 (12), pp. 5707-5738. Date of Electronic Publication: 2021 Nov 26.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.; Review
MeSH Terms :
Cellular Reprogramming Techniques/*methods
Electroporation/*methods
Microtechnology/*methods
Nanotechnology/*methods
Oligonucleotide Array Sequence Analysis/*methods
Transfection/*methods
Animals ; Male ; Mice ; Mice, Inbred C57BL ; Microtechnology/instrumentation ; Nanotechnology/instrumentation ; Oligonucleotide Array Sequence Analysis/instrumentation ; Plasmids/chemistry ; Plasmids/metabolism ; Quality Control ; Silicon/chemistry ; Skin/metabolism ; Transfection/instrumentation
Czasopismo naukowe
Tytuł :
Gene expression microarray analysis of adult testicular germ cell tumor: a comparison between pure-type seminomas and seminoma components in mixed tumors.
Autorzy :
Miyai K; Department of Basic Pathology, National Defense Medical College, 3-2 Namiki, Tokorozawa, Saitama, 359-8513, Japan. .; Department of Laboratory Medicine, National Defense Medical College, Tokorozawa, Saitama, 359-8513, Japan. .
Yonekura Y; Department of Basic Pathology, National Defense Medical College, 3-2 Namiki, Tokorozawa, Saitama, 359-8513, Japan.
Ito K; Department of Urology, National Defense Medical College, Tokorozawa, Saitama, 359-8513, Japan.
Matsukuma S; Department of Laboratory Medicine, National Defense Medical College, Tokorozawa, Saitama, 359-8513, Japan.
Tsuda H; Department of Basic Pathology, National Defense Medical College, 3-2 Namiki, Tokorozawa, Saitama, 359-8513, Japan.
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Źródło :
Virchows Archiv : an international journal of pathology [Virchows Arch] 2021 Dec; Vol. 479 (6), pp. 1177-1186. Date of Electronic Publication: 2021 Aug 04.
Typ publikacji :
Comparative Study; Journal Article
MeSH Terms :
Gene Expression Profiling*
Oligonucleotide Array Sequence Analysis*
Transcriptome*
Biomarkers, Tumor/*genetics
Cellular Reprogramming/*genetics
Neoplasms, Complex and Mixed/*genetics
Neoplasms, Germ Cell and Embryonal/*genetics
Seminoma/*genetics
Testicular Neoplasms/*genetics
Adolescent ; Adult ; Biomarkers, Tumor/analysis ; Disease Progression ; Gene Expression Regulation, Neoplastic ; Humans ; Immunohistochemistry ; Male ; Middle Aged ; Neoplasms, Complex and Mixed/chemistry ; Neoplasms, Complex and Mixed/pathology ; Neoplasms, Germ Cell and Embryonal/chemistry ; Neoplasms, Germ Cell and Embryonal/pathology ; Real-Time Polymerase Chain Reaction ; Reverse Transcriptase Polymerase Chain Reaction ; Seminoma/chemistry ; Seminoma/pathology ; Testicular Neoplasms/chemistry ; Testicular Neoplasms/pathology ; Young Adult
SCR Disease Name :
Nonseminomatous germ cell tumor
Czasopismo naukowe
Tytuł :
Comparison of sparse biclustering algorithms for gene expression datasets.
Autorzy :
Nicholls K; Cambridge Institute for Therapeutic Immunology and Infectious Disease, University of Cambridge, Cambridge, CB2 0AW, UK.
Wallace C; Cambridge Institute for Therapeutic Immunology and Infectious Disease, University of Cambridge, Cambridge, CB2 0AW, UK.; MRC Biostatistics Unit, Cambridge Biomedical Campus, Forvie Site, Robinson Way, Cambridge, CB2 0SR, UK.
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Źródło :
Briefings in bioinformatics [Brief Bioinform] 2021 Nov 05; Vol. 22 (6).
Typ publikacji :
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Algorithms*
Databases, Genetic*
Gene Expression Profiling*
Gene Expression Regulation*
Oligonucleotide Array Sequence Analysis*
Czasopismo naukowe
Tytuł :
A comparison of genotyping arrays.
Autorzy :
Verlouw JAM; Department of Internal Medicine, Erasmus MC, Rotterdam, The Netherlands.
Clemens E; Department of Pediatric Oncology, Erasmus MC, Rotterdam, The Netherlands.; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
de Vries JH; Department of Internal Medicine, Erasmus MC, Rotterdam, The Netherlands.
Zolk O; Institute of Clinical Pharmacology, Brandenburg Medical School, Immanuel Klinik Rüdersdorf, Rüdersdorf, Germany.
Verkerk AJMH; Department of Internal Medicine, Erasmus MC, Rotterdam, The Netherlands.
Am Zehnhoff-Dinnesen A; Clinic of Phoniatrics and Pedaudiology, University Hospital Münster, Münster, Germany.
Medina-Gomez C; Department of Internal Medicine, Erasmus MC, Rotterdam, The Netherlands.
Lanvers-Kaminsky C; Department of Pediatric Hematology and Oncology, University Children's Hospital, Muenster, Germany.
Rivadeneira F; Department of Internal Medicine, Erasmus MC, Rotterdam, The Netherlands.
Langer T; Department of Pediatric Oncology and Hematology, University Hospital for Children and Adolescents Lübeck, Lübeck, Germany.
van Meurs JBJ; Department of Internal Medicine, Erasmus MC, Rotterdam, The Netherlands.
van den Heuvel-Eibrink MM; Department of Pediatric Oncology, Erasmus MC, Rotterdam, The Netherlands.; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Uitterlinden AG; Department of Internal Medicine, Erasmus MC, Rotterdam, The Netherlands.; Department of Epidemiology, Erasmus MC, Rotterdam, The Netherlands.
Broer L; Department of Internal Medicine, Erasmus MC, Rotterdam, The Netherlands. .
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Źródło :
European journal of human genetics : EJHG [Eur J Hum Genet] 2021 Nov; Vol. 29 (11), pp. 1611-1624. Date of Electronic Publication: 2021 Jun 18.
Typ publikacji :
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genetic Testing/*standards
Genotyping Techniques/*standards
Oligonucleotide Array Sequence Analysis/*standards
Genetic Testing/methods ; Genome-Wide Association Study/methods ; Genome-Wide Association Study/standards ; Genotyping Techniques/methods ; Humans ; Oligonucleotide Array Sequence Analysis/methods ; Reagent Kits, Diagnostic/standards ; Sensitivity and Specificity
Czasopismo naukowe
Tytuł :
Reexamining the optimal nuchal translucency cutoff for diagnostic testing in the cell-free DNA and microarray era: results from the Victorian Perinatal Record Linkage study.
Autorzy :
Hui L; Reproductive Epidemiology Group, Murdoch Children's Research Institute, Parkville, Victoria, Australia; Department of Obstetrics, Mercy Hospital for Women, Heidelberg, Victoria, Australia; Department of Obstetrics and Gynaecology, University of Melbourne, Parkville, Victoria, Australia; Northern Hospital Epping, Epping, Victoria, Australia. Electronic address: .
Pynaker C; Reproductive Epidemiology Group, Murdoch Children's Research Institute, Parkville, Victoria, Australia.
Bonacquisto L; Victorian Clinical Genetics Services, Murdoch Children's Research Institute, Parkville, Victoria, Australia.
Lindquist A; Reproductive Epidemiology Group, Murdoch Children's Research Institute, Parkville, Victoria, Australia; Department of Obstetrics, Mercy Hospital for Women, Heidelberg, Victoria, Australia.
Poulton A; Reproductive Epidemiology Group, Murdoch Children's Research Institute, Parkville, Victoria, Australia.
Kluckow E; Reproductive Epidemiology Group, Murdoch Children's Research Institute, Parkville, Victoria, Australia; Department of Obstetrics and Gynaecology, University of Melbourne, Parkville, Victoria, Australia.
Hutchinson B; Department of Obstetrics, Mercy Hospital for Women, Heidelberg, Victoria, Australia.
Norris F; Victorian Clinical Genetics Services, Murdoch Children's Research Institute, Parkville, Victoria, Australia.
Pertile MD; Victorian Clinical Genetics Services, Murdoch Children's Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, University of Melbourne, Parkville, Victoria, Australia.
Gugasyan L; Cytogenetics, Monash Pathology, Monash Medical Centre, Clayton, Victoria, Australia.
Kulkarni A; Cytogenetics, Monash Pathology, Monash Medical Centre, Clayton, Victoria, Australia.
Harraway J; Sullivan Nicolaides Pathology, Brisbane, Australia.
Howden A; Cytogenetics, Melbourne Pathology, Collingwood, Victoria, Australia.
McCoy R; Department of Molecular Genetics, Australian Clinical Labs, Clayton, Victoria, Australia.
da Silva Costa F; Department of Gynecology and Obstetrics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil; Department of Obstetrics and Gynaecology, Monash University, Clayton, Victoria, Australia.
Menezes M; Department of Paediatrics, University of Melbourne, Parkville, Victoria, Australia; Monash Ultrasound for Women, Richmond, Victoria, Australia.
Palma-Dias R; Department of Obstetrics and Gynaecology, University of Melbourne, Parkville, Victoria, Australia; Women's Ultrasound Melbourne, East Melbourne, Victoria, Australia; Ultrasound Services, Royal Women's Hospital, Parkville, Victoria, Australia.
Nisbet D; Department of Medicine and Radiology, University of Melbourne, Parkville, Victoria, Australia; Women's Ultrasound Melbourne, East Melbourne, Victoria, Australia; Ultrasound Services, Royal Women's Hospital, Parkville, Victoria, Australia.
Martin N; Virtus Diagnostics and Pathology Services, Spring Hill, Queensland, Australia.
Bethune M; Department of Medicine and Radiology, University of Melbourne, Parkville, Victoria, Australia; Specialist Women's Ultrasound, Box Hill, Victoria, Australia.
Poulakis Z; Prevention Innovation Group, Population Health, Murdoch Children's Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, University of Melbourne, Parkville, Victoria, Australia; Victorian Infant Hearing Screening Program, Centre for Community Child Health, Royal Children's Hospital, Parkville, Victoria, Australia.
Halliday J; Reproductive Epidemiology Group, Murdoch Children's Research Institute, Parkville, Victoria, Australia; Department of Paediatrics, University of Melbourne, Parkville, Victoria, Australia.
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Źródło :
American journal of obstetrics and gynecology [Am J Obstet Gynecol] 2021 Nov; Vol. 225 (5), pp. 527.e1-527.e12. Date of Electronic Publication: 2021 May 03.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Cell-Free Nucleic Acids*
Chromosome Aberrations*
Nuchal Translucency Measurement*
Oligonucleotide Array Sequence Analysis*
Noninvasive Prenatal Testing/*methods
Adolescent ; Adult ; Australia ; Female ; Humans ; Middle Aged ; Polymorphism, Single Nucleotide ; Pregnancy ; Pregnancy Trimester, First ; Retrospective Studies ; Young Adult
Czasopismo naukowe
Tytuł :
A two-year prospective study assessing the performance of fetal chromosomal microarray analysis and next-generation sequencing in high-risk pregnancies.
Autorzy :
Ridnõi K; Centre for Perinatal Care, Women's Clinic, East-Tallinn Central Hospital, Tallinn, Estonia.; Department of Clinical Genetics, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia.
Muru K; Department of Clinical Genetics, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia.; Department of Clinical Genetics, United Laboratories, Tartu University Hospital, Tartu, Estonia.
Keernik M; Department of Clinical Genetics, United Laboratories, Tartu University Hospital, Tartu, Estonia.
Pajusalu S; Department of Clinical Genetics, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia.; Department of Clinical Genetics, United Laboratories, Tartu University Hospital, Tartu, Estonia.; Department of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Ustav EL; Women's Clinic, Tartu University Hospital, Tartu, Estonia.
Tammur P; Department of Clinical Genetics, United Laboratories, Tartu University Hospital, Tartu, Estonia.
Mölter-Väär T; Department of Clinical Genetics, United Laboratories, Tartu University Hospital, Tartu, Estonia.
Kahre T; Department of Clinical Genetics, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia.; Department of Clinical Genetics, United Laboratories, Tartu University Hospital, Tartu, Estonia.
Šamarina U; Department of Clinical Genetics, United Laboratories, Tartu University Hospital, Tartu, Estonia.
Asser K; Radiology Clinic, Tartu University Hospital, Tartu, Estonia.
Szirko F; Centre for Perinatal Care, Women's Clinic, East-Tallinn Central Hospital, Tallinn, Estonia.
Reimand T; Department of Clinical Genetics, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia.; Department of Clinical Genetics, United Laboratories, Tartu University Hospital, Tartu, Estonia.; Department of Biomedicine, Institute of Biomedicine and Translational Medicine, University of Tartu, Tartu, Estonia.
Õunap K; Department of Clinical Genetics, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia.; Department of Clinical Genetics, United Laboratories, Tartu University Hospital, Tartu, Estonia.
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Źródło :
Molecular genetics & genomic medicine [Mol Genet Genomic Med] 2021 Oct; Vol. 9 (10), pp. e1787. Date of Electronic Publication: 2021 Sep 06.
Typ publikacji :
Journal Article
MeSH Terms :
Chromosome Aberrations*
High-Throughput Nucleotide Sequencing*/methods
Chromosome Disorders/*genetics
Oligonucleotide Array Sequence Analysis/*methods
Pregnancy, High-Risk/*genetics
Prenatal Diagnosis/*methods
Cell-Free Nucleic Acids ; Chromosome Disorders/diagnosis ; Female ; Genetic Association Studies ; Genetic Markers ; Genetic Predisposition to Disease ; Genetic Testing ; Humans ; Oligonucleotide Array Sequence Analysis/standards ; Pregnancy ; Prenatal Diagnosis/standards ; Prospective Studies ; Risk Assessment ; Ultrasonography, Prenatal
Czasopismo naukowe
Tytuł :
Identification of hub genes and molecular subtypes in COVID-19 based on WGCNA.
Autorzy :
Hu RW; Department of Gastrointestinal Surgery, Henan Provincial People's Hospital, Zhengzhou, Henan, China. .
Liu C
Yan YY
Li D
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Źródło :
European review for medical and pharmacological sciences [Eur Rev Med Pharmacol Sci] 2021 Oct; Vol. 25 (20), pp. 6411-6424.
Typ publikacji :
Journal Article
MeSH Terms :
Oligonucleotide Array Sequence Analysis*
Biomarkers, Tumor/*genetics
COVID-19/*genetics
COVID-19/diagnosis ; Genetic Variation/genetics ; Humans
Czasopismo naukowe
Tytuł :
Metabolic profiling of maternal serum of women at high-risk of spontaneous preterm birth using NMR and MGWAS approach.
Autorzy :
Gupta JK; Wolfson Centre for Personalised Medicine, Department of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3GL, UK.; Harris-Wellbeing Research Centre, University Department, Liverpool Women's Hospital, Liverpool, L8 7SS, UK.
Care A; Harris-Wellbeing Research Centre, University Department, Liverpool Women's Hospital, Liverpool, L8 7SS, UK.
Goodfellow L; Harris-Wellbeing Research Centre, University Department, Liverpool Women's Hospital, Liverpool, L8 7SS, UK.
Alfirevic Z; Harris-Wellbeing Research Centre, University Department, Liverpool Women's Hospital, Liverpool, L8 7SS, UK.
Lian LY; NMR Centre for Structural Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK.
Müller-Myhsok B; Wolfson Centre for Personalised Medicine, Department of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3GL, UK.; Max Planck Institute of Psychiatry, Munich 80804, Germany.
Alfirevic A; Wolfson Centre for Personalised Medicine, Department of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3GL, UK.; Harris-Wellbeing Research Centre, University Department, Liverpool Women's Hospital, Liverpool, L8 7SS, UK.
Phelan MM; NMR Centre for Structural Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK.
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Źródło :
Bioscience reports [Biosci Rep] 2021 Sep 30; Vol. 41 (9).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Magnetic Resonance Spectroscopy*
Metabolome*
Metabolomics*
Oligonucleotide Array Sequence Analysis*
Polymorphism, Single Nucleotide*
Lactic Acid/*blood
Premature Birth/*blood
Premature Birth/*genetics
TNF Receptor-Associated Factor 1/*genetics
Adult ; Biomarkers/blood ; Case-Control Studies ; Female ; Genetic Predisposition to Disease ; Genome-Wide Association Study ; Gestational Age ; Humans ; Neural Networks, Computer ; Phenotype ; Predictive Value of Tests ; Pregnancy ; Premature Birth/diagnosis ; Prospective Studies ; Risk Assessment ; Risk Factors
Czasopismo naukowe
Tytuł :
Microarray analysis of genes with differential expression of m6A methylation in lung cancer.
Autorzy :
Wu S; Department of Pulmonary and Critical Care Medicine, Xijing Hospital, Fourth Military Medical University, Xi'an, Shanxi 710032, China.
Lv X; Department of Pulmonary and Critical Care Medicine, Xijing Hospital, Fourth Military Medical University, Xi'an, Shanxi 710032, China.
Zhang Y; Department of Pulmonary and Critical Care Medicine, Xijing Hospital, Fourth Military Medical University, Xi'an, Shanxi 710032, China.
Xu X; Department of Pulmonary and Critical Care Medicine, Xijing Hospital, Fourth Military Medical University, Xi'an, Shanxi 710032, China.
Zhao F; Department of Pulmonary and Critical Care Medicine, Xijing Hospital, Fourth Military Medical University, Xi'an, Shanxi 710032, China.
Zhang Y; Department of Pulmonary Medicine, Thoracis Hospital Xi'an International Medical Center, Xi'an, Shanxi 710100, China.
Chen L; Department of Pulmonary Medicine, Thoracis Hospital Xi'an International Medical Center, Xi'an, Shanxi 710100, China.
Ou-Yang H; Department of Pulmonary Medicine, Thoracis Hospital Xi'an International Medical Center, Xi'an, Shanxi 710100, China.
Ti X; Department of Pulmonary and Critical Care Medicine, Xijing Hospital, Fourth Military Medical University, Xi'an, Shanxi 710032, China.
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Źródło :
Bioscience reports [Biosci Rep] 2021 Sep 30; Vol. 41 (9).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA Methylation*
Epigenome*
Epigenomics*
Gene Expression Profiling*
Oligonucleotide Array Sequence Analysis*
Transcriptome*
Adenosine/*analogs & derivatives
Biomarkers, Tumor/*genetics
Lung Neoplasms/*genetics
Adenosine/analysis ; Gene Expression Regulation, Neoplastic ; Gene Regulatory Networks ; Humans
Czasopismo naukowe
Tytuł :
Revisiting genetic artifacts on DNA methylation microarrays exposes novel biological implications.
Autorzy :
Planterose Jiménez B; Erasmus MC, University Medical Center Rotterdam, Department of Genetic Identification, Rotterdam, the Netherlands.
Kayser M; Erasmus MC, University Medical Center Rotterdam, Department of Genetic Identification, Rotterdam, the Netherlands.
Vidaki A; Erasmus MC, University Medical Center Rotterdam, Department of Genetic Identification, Rotterdam, the Netherlands. .
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Źródło :
Genome biology [Genome Biol] 2021 Sep 21; Vol. 22 (1), pp. 274. Date of Electronic Publication: 2021 Sep 21.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Artifacts*
DNA Methylation*
Oligonucleotide Array Sequence Analysis*
Software*
Fluorescent Dyes ; Humans ; INDEL Mutation ; Introns ; Polymorphism, Single Nucleotide ; Quantitative Trait Loci ; Twins, Monozygotic/genetics
Czasopismo naukowe
Tytuł :
Clinical Application of Chromosome Microarray Analysis in the Diagnosis of Lipomatous Tumors.
Autorzy :
Pei J; Department of Pathology, Fox Chase Cancer Center, Philadelphia, PA.
Flieder DB
Talarchek JN
Cooper HS
Patchefsky AS
Wei S
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Źródło :
Applied immunohistochemistry & molecular morphology : AIMM [Appl Immunohistochem Mol Morphol] 2021 Sep 01; Vol. 29 (8), pp. 592-598.
Typ publikacji :
Journal Article
MeSH Terms :
Chromosome Aberrations*
Chromosomes, Human*/genetics
Chromosomes, Human*/metabolism
Gene Expression Profiling*
Liposarcoma*/diagnosis
Liposarcoma*/genetics
Liposarcoma*/metabolism
Liposarcoma*/pathology
Neoplasm Proteins*/biosynthesis
Neoplasm Proteins*/genetics
Oligonucleotide Array Sequence Analysis*
Adult ; Aged ; Aged, 80 and over ; Female ; Humans ; In Situ Hybridization, Fluorescence ; Male ; Middle Aged
Czasopismo naukowe
Tytuł :
Loss of Gene Information: Discrepancies between RNA Sequencing, cDNA Microarray, and qRT-PCR.
Autorzy :
Rachinger N; Institute of Biochemistry, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Fahrstraße 17, 91054 Erlangen, Germany.
Fischer S; Faculty of Computer Science, Deggendorf Institute of Technology, Dieter-Görlitz-Platz 1, 94469 Deggendorf, Germany.
Böhme I; Institute of Biochemistry, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Fahrstraße 17, 91054 Erlangen, Germany.
Linck-Paulus L; Institute of Biochemistry, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Fahrstraße 17, 91054 Erlangen, Germany.
Kuphal S; Institute of Biochemistry, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Fahrstraße 17, 91054 Erlangen, Germany.
Kappelmann-Fenzl M; Faculty of Computer Science, Deggendorf Institute of Technology, Dieter-Görlitz-Platz 1, 94469 Deggendorf, Germany.
Bosserhoff AK; Institute of Biochemistry, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Fahrstraße 17, 91054 Erlangen, Germany.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2021 Aug 28; Vol. 22 (17). Date of Electronic Publication: 2021 Aug 28.
Typ publikacji :
Comparative Study; Journal Article
MeSH Terms :
Oligonucleotide Array Sequence Analysis*
Reverse Transcriptase Polymerase Chain Reaction*
Sequence Analysis, RNA*
Gene Expression Profiling/*methods
Adaptor Proteins, Signal Transducing/genetics ; Cell Line, Tumor ; Humans ; Intracellular Signaling Peptides and Proteins/genetics ; RNA/chemistry ; SOX Transcription Factors/genetics ; Transcription Factors/genetics ; Transcriptional Coactivator with PDZ-Binding Motif Proteins ; Transcriptome ; YAP-Signaling Proteins
Czasopismo naukowe
Tytuł :
Molecular subtyping of breast cancer intrinsic taxonomy with oligonucleotide microarray and NanoString nCounter.
Autorzy :
Chen YJ; Comprehensive Breast Health Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Huang CS; Division of General Surgery, Department of Surgery, Cathay General Hospital, Taipei, Taiwan.; School of Medicine, College of Medicine, Taipei Medical University, Taipei, Taiwan.
Phan NN; Bioinformatics Program, Taiwan International Graduate Program, Institute of Information Science, Academia Sinica, Taipei, Taiwan.; Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan.
Lu TP; Institute of Epidemiology and Preventive Medicine, National Taiwan University, Taipei, Taiwan.
Liu CY; Department of Pathology, Cathay General Hospital SiJhih, New Taipei, Taiwan.
Huang CJ; Department of Medical Research, Cathay General Hospital, Taipei, Taiwan.; Department of Biochemistry, National Defense Medical Center, Taipei, Taiwan.
Chiu JH; Institute of Traditional Medicine, School of Medicine, National Yang Ming Chiao Tung University, Taipei, Taiwan.; School of Medicine, College of Medicine, National Yang Ming Chiao Tung University, Taipei Taiwan.
Tseng LM; Comprehensive Breast Health Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.; School of Medicine, College of Medicine, National Yang Ming Chiao Tung University, Taipei Taiwan.
Huang CC; Comprehensive Breast Health Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.; Institute of Epidemiology and Preventive Medicine, National Taiwan University, Taipei, Taiwan.
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Źródło :
Bioscience reports [Biosci Rep] 2021 Aug 27; Vol. 41 (8).
Typ publikacji :
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Profiling*
Nanotechnology*
Oligonucleotide Array Sequence Analysis*
Transcriptome*
Biomarkers, Tumor/*genetics
Breast Neoplasms/*genetics
Algorithms ; Breast Neoplasms/pathology ; Female ; Gene Expression Regulation, Neoplastic ; High-Throughput Nucleotide Sequencing ; Humans ; Taiwan
Czasopismo naukowe
Tytuł :
High-throughput N-glycan screening method for therapeutic antibodies using a microchip-based DNA analyzer: a promising methodology for monitoring monoclonal antibody N-glycosylation.
Autorzy :
Kinoshita M; Department of Pharmaceutical Sciences, Kindai University, Kowakae 3-4-1, Higashi-osaka, 577-8502, Japan. .
Nakajima K; Center for Joint Research Facilities Support, Research Promotion and Support Headquarters, Fujita Health University, 1-98, Dengakugakubo, Kutsukake-cho, Toyoake, Aichi, 470-1192, Japan.
Yamamoto S; Department of Pharmaceutical Sciences, Kindai University, Kowakae 3-4-1, Higashi-osaka, 577-8502, Japan.
Suzuki S; Department of Pharmaceutical Sciences, Kindai University, Kowakae 3-4-1, Higashi-osaka, 577-8502, Japan.
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Źródło :
Analytical and bioanalytical chemistry [Anal Bioanal Chem] 2021 Aug; Vol. 413 (19), pp. 4727-4738. Date of Electronic Publication: 2021 Jun 02.
Typ publikacji :
Journal Article
MeSH Terms :
Oligonucleotide Array Sequence Analysis*
Antibodies, Monoclonal/*chemistry
High-Throughput Screening Assays/*methods
Polysaccharides/*chemistry
Animals ; CHO Cells ; Cell Line, Tumor ; Cricetinae ; Cricetulus ; Fluorescent Dyes ; Mice ; Reproducibility of Results ; Sensitivity and Specificity
Czasopismo naukowe
Tytuł :
Array-based dynamic allele specific hybridization (Array-DASH): Optimization-free microarray processing for multiple simultaneous genomic assays.
Autorzy :
Gibson SJ; Department of Genetics, Adrian Building, University of Leicester, University Road, Leicester, Leicestershire, LE17RH, UK.
Zahra N; Anglia Ruskin University, Department of Biomedical and Forensic Science, SCI004, East Road, Cambridge, CB1 1PT, UK.
Freeman PJ; Division of Informatics, Imaging & Data Science, Faculty of Biology, Medicine and Health, The University of Manchester, G.725, Stopford Building, Oxford Road, Manchester, M13 9PT, UK.
Howard C; Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
Lancaster O; Department of Genetics, Adrian Building, University of Leicester, University Road, Leicester, Leicestershire, LE17RH, UK.
Veal C; Department of Genetics, Adrian Building, University of Leicester, University Road, Leicester, Leicestershire, LE17RH, UK.
Fontdevila MC; Institut de Recerca de la SIDA - IrsiCaixa, Hospital Universitari Germans Trias i Pujol, Crta. de Canyet s/n, Planta 2a, 08916, Badalona, Catalonia, Spain.
Paredes R; Institut de Recerca de la SIDA - IrsiCaixa, Hospital Universitari Germans Trias i Pujol, Crta. de Canyet s/n, Planta 2a, 08916, Badalona, Catalonia, Spain.
Noguera-Julian M; Institut de Recerca de la SIDA - IrsiCaixa, Hospital Universitari Germans Trias i Pujol, Crta. de Canyet s/n, Planta 2a, 08916, Badalona, Catalonia, Spain.
Slater A; Biomolecular Technology Group, School of Allied Health Sciences, De Montfort University, Hawthorn Building HB1.12, The Gateway, Leicester, Leicestershire, LE19BH, UK.
Brookes AJ; Department of Genetics, Adrian Building, University of Leicester, University Road, Leicester, Leicestershire, LE17RH, UK. Electronic address: .
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Źródło :
Analytical biochemistry [Anal Biochem] 2021 Aug 01; Vol. 626, pp. 114124. Date of Electronic Publication: 2021 Feb 16.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Plant*
Genome, Viral*
Genotyping Techniques*
Oligonucleotide Array Sequence Analysis*
Software*
COVID-19/*genetics
HIV-1/*genetics
Hypericum/*genetics
COVID-19/epidemiology ; Humans
Czasopismo naukowe
Tytuł :
DNA microarray analysis of Staphylococcus aureus from Nigeria and South Africa.
Autorzy :
Shittu AO; Department of Microbiology, Obafemi Awolowo University, Ile-Ife, Nigeria.; Institute of Medical Microbiology, University Hospital Münster, Münster, Germany.
Adesoji T; Department of Microbiology, Obafemi Awolowo University, Ile-Ife, Nigeria.
Udo EE; Department of Microbiology, Faculty of Medicine, Kuwait University, Safat, Kuwait.
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Źródło :
PloS one [PLoS One] 2021 Jul 20; Vol. 16 (7), pp. e0237124. Date of Electronic Publication: 2021 Jul 20 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Oligonucleotide Array Sequence Analysis*
Staphylococcus aureus/*genetics
Nigeria ; South Africa ; Staphylococcus aureus/isolation & purification
Czasopismo naukowe
Tytuł :
Sequencing dropout-and-batch effect normalization for single-cell mRNA profiles: a survey and comparative analysis.
Autorzy :
Lan T; Faculty of Engineering and IT in the University of Technology Sydney.
Hutvagner G; School of Biomedical Engineering, University of Technology Sydney.
Lan Q; Neurosurgical Department of Second Affiliated Hospital of Soochow University.
Liu T; Children's Cancer Institute Australia.
Li J; Faculty of Engineering and IT in the University of Technology Sydney.
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Źródło :
Briefings in bioinformatics [Brief Bioinform] 2021 Jul 20; Vol. 22 (4).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Profiling*
Oligonucleotide Array Sequence Analysis*
RNA, Messenger*/biosynthesis
RNA, Messenger*/genetics
Single-Cell Analysis*
Software*
Transcriptome*
Czasopismo naukowe
Tytuł :
Identification of crucial long non-coding RNAs and mRNAs along with related regulatory networks through microarray analysis in esophageal carcinoma.
Autorzy :
Zhang Y; Department of Radiation Oncology, Anyang Cancer Hospital, The 4th Affiliated Hospital of Henan University of Science and Technology, Anyang, 455000, Henan Province, China.
Wang H; Department of Radiation Oncology, Anyang Cancer Hospital, The 4th Affiliated Hospital of Henan University of Science and Technology, Anyang, 455000, Henan Province, China.
Zhou F; Department of Radiation Oncology, Anyang Cancer Hospital, The 4th Affiliated Hospital of Henan University of Science and Technology, Anyang, 455000, Henan Province, China.
Hao A; Department of Radiation Oncology, Anyang Cancer Hospital, The 4th Affiliated Hospital of Henan University of Science and Technology, Anyang, 455000, Henan Province, China.
Dai N; Department of Radiation Oncology, Anyang Cancer Hospital, The 4th Affiliated Hospital of Henan University of Science and Technology, Anyang, 455000, Henan Province, China.
Yang H; Department of Radiation Oncology, Anyang Cancer Hospital, The 4th Affiliated Hospital of Henan University of Science and Technology, Anyang, 455000, Henan Province, China.
Zheng A; Department of Radiation Oncology, Anyang Cancer Hospital, The 4th Affiliated Hospital of Henan University of Science and Technology, Anyang, 455000, Henan Province, China. .
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Źródło :
Functional & integrative genomics [Funct Integr Genomics] 2021 Jul; Vol. 21 (3-4), pp. 377-391. Date of Electronic Publication: 2021 Apr 16.
Typ publikacji :
Journal Article
MeSH Terms :
Esophageal Neoplasms*/genetics
Gene Expression Regulation, Neoplastic*
Gene Regulatory Networks*
Oligonucleotide Array Sequence Analysis*
RNA, Long Noncoding*/genetics
RNA, Messenger*/genetics
Humans ; Transcription Factors
Czasopismo naukowe

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