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Tytuł:
Comprehensive fluorescence profiles of contamination-prone foods applied to the design of microcontact-printed in situ functional oligonucleotide sensors.
Autorzy:
Khan S; School of Biomedical Engineering, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4L8, Canada.
Shakeri A; Department of Mechanical Engineering, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4L7, Canada.
Monteiro JK; Department of Medicine, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4K1, Canada.
Tariq S; Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4K1, Canada.
Prasad A; School of Biomedical Engineering, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4L8, Canada.
Gu J; Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4K1, Canada.
Filipe CDM; Department of Chemical Engineering, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4L7, Canada. .
Li Y; Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4K1, Canada. .
Didar TF; School of Biomedical Engineering, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4L8, Canada. .; Department of Mechanical Engineering, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4L7, Canada. .
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Źródło:
Scientific reports [Sci Rep] 2024 Apr 09; Vol. 14 (1), pp. 8277. Date of Electronic Publication: 2024 Apr 09.
Typ publikacji:
Journal Article
MeSH Terms:
Oligonucleotides*
Food Contamination*/analysis
Humans ; Fluorescent Dyes ; Food Quality ; Oligonucleotide Array Sequence Analysis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Advanced stage, high-grade primary tumor ovarian cancer: a multi-omics dissection and biomarker prediction process.
Autorzy:
Honar YS; Department of Plant Biotechnology, Faculty of Life Sciences and Biotechnology, Shahid Beheshti University, Tehran, 1983963113, Iran.
Javaher S; Department of Plant Biotechnology, Faculty of Life Sciences and Biotechnology, Shahid Beheshti University, Tehran, 1983963113, Iran.
Soleimani M; Department of Cell and Molecular Biology, Faculty of Life Sciences and Biotechnology, Shahid Beheshti University, Tehran, 1983969411, Iran.
Zarebkohan A; Department of Medical Nanotechnology, Drug Applied Research Center, Faculty of Advanced Medical Sciences, Tabriz University of Medical Sciences, Tabriz, 516661-4733, Iran.
Farhadihosseinabadi B; Hematopoietic Stem Cell Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Tohidfar M; Department of Cell and Molecular Biology, Faculty of Life Sciences and Biotechnology, Shahid Beheshti University, Tehran, 1983969411, Iran. m_.
Abdollahpour-Alitappeh M; Cellular and Molecular Biology Research Center, Larestan University of Medical Sciences, Larestan, Iran. .
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Źródło:
Scientific reports [Sci Rep] 2023 Oct 12; Vol. 13 (1), pp. 17265. Date of Electronic Publication: 2023 Oct 12.
Typ publikacji:
Journal Article
MeSH Terms:
MicroRNAs*/genetics
MicroRNAs*/metabolism
Ovarian Neoplasms*/diagnosis
Ovarian Neoplasms*/genetics
CDC2-CDC28 Kinases*/genetics
Humans ; Female ; Multiomics ; Biomarkers, Tumor/genetics ; Biomarkers, Tumor/metabolism ; Computational Biology ; Gene Expression Profiling ; Oligonucleotide Array Sequence Analysis ; Gene Regulatory Networks ; Cell Cycle Proteins/metabolism ; Microtubule-Associated Proteins/metabolism ; ATPases Associated with Diverse Cellular Activities/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Microarray analysis reveals ONC201 mediated differential mechanisms of CHOP gene regulation in metastatic and nonmetastatic colorectal cancer cells.
Autorzy:
Al Madhoun A; Department of Genetics and Bioinformatics, Dasman Diabetes Institute, 15462, Dasman, Kuwait. .; Department of Animal and Imaging Core Facilities, Dasman Diabetes Institute, 15462, Dasman, Kuwait. .
Haddad D; Department of Genetics and Bioinformatics, Dasman Diabetes Institute, 15462, Dasman, Kuwait.
Al Tarrah M; Department of Genetics and Bioinformatics, Dasman Diabetes Institute, 15462, Dasman, Kuwait.
Jacob S; Department of Genetics and Bioinformatics, Dasman Diabetes Institute, 15462, Dasman, Kuwait.
Al-Ali W; Department of Pharmacology and Toxicology, Faculty of Medicine, Kuwait University, 046302, Jabriya, Kuwait.
Nizam R; Department of Genetics and Bioinformatics, Dasman Diabetes Institute, 15462, Dasman, Kuwait.
Miranda L; Department of Animal and Imaging Core Facilities, Dasman Diabetes Institute, 15462, Dasman, Kuwait.
Al-Rashed F; Department of Immunology and Microbiology, Dasman Diabetes Institute, 15462, Dasman, Kuwait.
Sindhu S; Department of Animal and Imaging Core Facilities, Dasman Diabetes Institute, 15462, Dasman, Kuwait.; Department of Immunology and Microbiology, Dasman Diabetes Institute, 15462, Dasman, Kuwait.
Ahmad R; Department of Immunology and Microbiology, Dasman Diabetes Institute, 15462, Dasman, Kuwait.
Bitar MS; Department of Pharmacology and Toxicology, Faculty of Medicine, Kuwait University, 046302, Jabriya, Kuwait.
Al-Mulla F; Department of Genetics and Bioinformatics, Dasman Diabetes Institute, 15462, Dasman, Kuwait. .
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Źródło:
Scientific reports [Sci Rep] 2021 Jun 04; Vol. 11 (1), pp. 11893. Date of Electronic Publication: 2021 Jun 04.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Regulation, Neoplastic*
Oligonucleotide Array Sequence Analysis*
Antineoplastic Agents/*pharmacology
Colorectal Neoplasms/*drug therapy
Colorectal Neoplasms/*metabolism
Imidazoles/*pharmacology
Pyridines/*pharmacology
Pyrimidines/*pharmacology
Transcription Factor CHOP/*biosynthesis
Alternative Splicing ; Apoptosis/drug effects ; Cell Line, Tumor ; Cell Proliferation/drug effects ; Cell Survival/drug effects ; Colorectal Neoplasms/genetics ; Computational Biology ; Humans ; Neoplasm Metastasis ; Polymerase Chain Reaction ; RNA, Messenger/metabolism ; Signal Transduction ; Tetrazolium Salts ; Thiazoles ; Transcription Factor CHOP/genetics ; Transcription Factor CHOP/metabolism ; Tumor Microenvironment ; Up-Regulation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Identification of transcriptional subtypes in lung adenocarcinoma and squamous cell carcinoma through integrative analysis of microarray and RNA sequencing data.
Autorzy:
Fauteux F; Digital Technologies Research Centre, National Research Council Canada, Ottawa, ON, Canada. .
Surendra A; Digital Technologies Research Centre, National Research Council Canada, Ottawa, ON, Canada.
McComb S; Human Health Therapeutics Research Centre, National Research Council Canada, Ottawa, ON, Canada.
Pan Y; Digital Technologies Research Centre, National Research Council Canada, Ottawa, ON, Canada.
Hill JJ; Human Health Therapeutics Research Centre, National Research Council Canada, Ottawa, ON, Canada. .
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Źródło:
Scientific reports [Sci Rep] 2021 Apr 22; Vol. 11 (1), pp. 8709. Date of Electronic Publication: 2021 Apr 22.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Oligonucleotide Array Sequence Analysis*
Transcription, Genetic*
Adenocarcinoma/*genetics
Carcinoma, Squamous Cell/*genetics
Lung Neoplasms/*genetics
Sequence Analysis, RNA/*methods
Biomarkers, Tumor/genetics ; Gene Expression Profiling ; Humans
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Full pathogen characterisation: species identification including the detection of virulence factors and antibiotic resistance genes via multiplex DNA-assays.
Autorzy:
Wolff N; Molecular Diagnostics, AIT Austrian Institute of Technology, Giefinggasse 4, 1210, Vienna, Austria. .
Hendling M; Molecular Diagnostics, AIT Austrian Institute of Technology, Giefinggasse 4, 1210, Vienna, Austria.
Schroeder F; Ekorefugium, Slunj, Croatia.
Schönthaler S; Molecular Diagnostics, AIT Austrian Institute of Technology, Giefinggasse 4, 1210, Vienna, Austria.
Geiss AF; University of Natural Resources and Life Sciences, Vienna, Austria.
Bedenic B; Department of Microbiology, School of Medicine, University of Zagreb, Zagreb, Croatia.
Barišić I; Molecular Diagnostics, AIT Austrian Institute of Technology, Giefinggasse 4, 1210, Vienna, Austria.
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Źródło:
Scientific reports [Sci Rep] 2021 Mar 16; Vol. 11 (1), pp. 6001. Date of Electronic Publication: 2021 Mar 16.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Bacteria*/classification
Bacteria*/genetics
Bacteria*/pathogenicity
Bacterial Typing Techniques*
Oligonucleotide Array Sequence Analysis*
Sepsis*/genetics
Sepsis*/microbiology
Drug Resistance, Bacterial/*genetics
Virulence Factors/*genetics
Humans
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
DNA quality evaluation of formalin-fixed paraffin-embedded heart tissue for DNA methylation array analysis.
Autorzy:
Dupont ME; Section of Forensic Genetics, Department of Forensic Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark. .
Christiansen SN; Section of Forensic Genetics, Department of Forensic Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Jacobsen SB; Section of Forensic Genetics, Department of Forensic Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Kampmann ML; Section of Forensic Genetics, Department of Forensic Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Olsen KB; Section of Forensic Pathology, Department of Forensic Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Tfelt-Hansen J; Section of Forensic Genetics, Department of Forensic Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.; Department of Cardiology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.
Banner J; Section of Forensic Pathology, Department of Forensic Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Morling N; Section of Forensic Genetics, Department of Forensic Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.; Department of Mathematical Sciences, Aalborg University, Aalborg, Denmark.
Andersen JD; Section of Forensic Genetics, Department of Forensic Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
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Źródło:
Scientific reports [Sci Rep] 2023 Feb 03; Vol. 13 (1), pp. 2004. Date of Electronic Publication: 2023 Feb 03.
Typ publikacji:
Journal Article
MeSH Terms:
DNA Methylation*
Formaldehyde*
Humans ; Oligonucleotide Array Sequence Analysis/methods ; Tissue Fixation/methods ; Paraffin Embedding ; DNA/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
MassArray analysis of genomic susceptibility variants in ovarian cancer.
Autorzy:
Verma S; Indian Council of Medical Research-Centre for Advance Research, Shri Mata Vaishno Devi University, Katra, Jammu and Kashmir, India. .; School of Biotechnology, Shri Mata Vaishno Devi University, Katra, India. .
Sharma I; Ancient DNA Laboratory, Birbal Shani Institute of Paleo Sciences, Lucknow, Uttar Pradesh, India.
Sharma V; Ancient DNA Laboratory, Birbal Shani Institute of Paleo Sciences, Lucknow, Uttar Pradesh, India.
Bhat A; School of Biotechnology, Shri Mata Vaishno Devi University, Katra, India.
Shah R; Department of Biotechnology, Kashmir University, Srinagar, Jammu and Kashmir, India.
Bhat GR; School of Biotechnology, Shri Mata Vaishno Devi University, Katra, India.
Sharma B; School of Biotechnology, Shri Mata Vaishno Devi University, Katra, India.
Bakshi D; School of Biotechnology, Shri Mata Vaishno Devi University, Katra, India.
Nagpal A; School of Biotechnology, Shri Mata Vaishno Devi University, Katra, India.
Wakhloo A; Department of Obstetrics and Gynecology, Government Medical College, Jammu, Jammu and Kashmir, India.
Bhat A; Centre for Molecular Biology, Central University of Jammu, Jammu, Jammu and Kashmir, India.
Kumar R; Indian Council of Medical Research-Centre for Advance Research, Shri Mata Vaishno Devi University, Katra, Jammu and Kashmir, India. .; School of Biotechnology, Shri Mata Vaishno Devi University, Katra, India. .
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Źródło:
Scientific reports [Sci Rep] 2020 Dec 03; Vol. 10 (1), pp. 21101. Date of Electronic Publication: 2020 Dec 03.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genetic Predisposition to Disease*
Genetic Variation*
Genome, Human*
Oligonucleotide Array Sequence Analysis*
Ovarian Neoplasms/*genetics
Alleles ; Case-Control Studies ; Female ; Gene Frequency ; Humans ; Middle Aged ; Molecular Sequence Annotation ; Polymorphism, Single Nucleotide/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Identification of potential microRNA panels for pancreatic cancer diagnosis using microarray datasets and bioinformatics methods.
Autorzy:
Shams R; Research Center for Gastroenterology and Liver Disease, Shahid Beheshti University of Medical Sciences, Tehran, Iran. .; Department of Medical Genetics, Shahid Beheshti University of Medical Sciences, Tehran, Iran. .
Saberi S; Research Center for Gastroenterology and Liver Disease, Shahid Beheshti University of Medical Sciences, Tehran, Iran.; HPGC Research Group, Medical Biotechnology Department, Biotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran.
Zali M; Research Center for Gastroenterology and Liver Disease, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Sadeghi A; Research Center for Gastroenterology and Liver Disease, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Ghafouri-Fard S; Department of Medical Genetics, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Aghdaei HA; Research Center for Gastroenterology and Liver Disease, Shahid Beheshti University of Medical Sciences, Tehran, Iran. .
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Źródło:
Scientific reports [Sci Rep] 2020 May 05; Vol. 10 (1), pp. 7559. Date of Electronic Publication: 2020 May 05.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Regulation, Neoplastic*
Oligonucleotide Array Sequence Analysis*
Computational Biology/*methods
MicroRNAs/*metabolism
Pancreatic Neoplasms/*diagnosis
Area Under Curve ; Biomarkers/metabolism ; Case-Control Studies ; Cluster Analysis ; Gene Expression Profiling ; Humans ; Multivariate Analysis ; Protein Interaction Mapping ; Reproducibility of Results ; Sensitivity and Specificity
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
How to copy and paste DNA microarrays.
Autorzy:
Krämer SD; ZBSA - Center for Biological Systems Analysis, Albert-Ludwigs-University Freiburg, Habsburgerstrasse. 49, D-79104, Freiburg, Germany. .; Faculty for Biology, Albert-Ludwigs-University Freiburg, Schaenzlestrasse 1, D-79104, Freiburg, Germany. .
Wöhrle J; ZBSA - Center for Biological Systems Analysis, Albert-Ludwigs-University Freiburg, Habsburgerstrasse. 49, D-79104, Freiburg, Germany.; IMTEK - Dep. of Microsystems Engineering, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 103, D-79110, Freiburg, Germany.
Meyer PA; ZBSA - Center for Biological Systems Analysis, Albert-Ludwigs-University Freiburg, Habsburgerstrasse. 49, D-79104, Freiburg, Germany.; IMTEK - Dep. of Microsystems Engineering, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 103, D-79110, Freiburg, Germany.
Urban GA; IMTEK - Dep. of Microsystems Engineering, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 103, D-79110, Freiburg, Germany.; BIOSS - Center for Biological Signalling Studies, Albert-Ludwigs-University Freiburg, Schaenzlestrasse 18, D-79104, Freiburg, Germany.
Roth G; ZBSA - Center for Biological Systems Analysis, Albert-Ludwigs-University Freiburg, Habsburgerstrasse. 49, D-79104, Freiburg, Germany.; Faculty for Biology, Albert-Ludwigs-University Freiburg, Schaenzlestrasse 1, D-79104, Freiburg, Germany.; BioCopy GmbH, Spechtweg 25, D-79110, Freiburg, Germany.; BIOSS - Center for Biological Signalling Studies, Albert-Ludwigs-University Freiburg, Schaenzlestrasse 18, D-79104, Freiburg, Germany.; BioCopy Holding AG, Industriestrasse 15, 8355, Aadorf, Switzerland.
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Źródło:
Scientific reports [Sci Rep] 2019 Sep 26; Vol. 9 (1), pp. 13940. Date of Electronic Publication: 2019 Sep 26.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Oligonucleotide Array Sequence Analysis/*methods
Costs and Cost Analysis ; DNA Probes/chemistry ; DNA Probes/genetics ; DNA, Single-Stranded/chemistry ; DNA, Single-Stranded/genetics ; Humans ; Oligonucleotide Array Sequence Analysis/economics ; Oligonucleotide Array Sequence Analysis/instrumentation ; Polymerase Chain Reaction/economics ; Polymerase Chain Reaction/instrumentation ; Polymerase Chain Reaction/methods ; Thrombin/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Learning complex dependency structure of gene regulatory networks from high dimensional microarray data with Gaussian Bayesian networks.
Autorzy:
Graafland CE; Instituto de Física de Cantabria, CSIC-Universidad de Cantabria, Avenida de Los Castros, 39005, Santander, Spain. .
Gutiérrez JM; Instituto de Física de Cantabria, CSIC-Universidad de Cantabria, Avenida de Los Castros, 39005, Santander, Spain.
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Źródło:
Scientific reports [Sci Rep] 2022 Nov 04; Vol. 12 (1), pp. 18704. Date of Electronic Publication: 2022 Nov 04.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*
Algorithms*
Bayes Theorem ; Oligonucleotide Array Sequence Analysis ; Normal Distribution ; Escherichia coli/genetics ; Computational Biology/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Hepamine - A Liver Disease Microarray Database, Visualization Platform and Data-Mining Resource.
Autorzy:
Itzel T; Division of Hepatology, Department of Medicine II, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.; Division of Bioinformatics, Department of Medicine II, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
Neubauer M; Division of Hepatology, Department of Medicine II, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
Ebert M; Department of Medicine II, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany.
Evert M; Department of Pathology, University of Regensburg, Regensburg, Germany.
Teufel A; Division of Hepatology, Department of Medicine II, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany. .; Division of Bioinformatics, Department of Medicine II, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany. .
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Źródło:
Scientific reports [Sci Rep] 2020 Mar 16; Vol. 10 (1), pp. 4760. Date of Electronic Publication: 2020 Mar 16.
Typ publikacji:
Journal Article
MeSH Terms:
Data Mining*
Databases, Genetic*
Datasets as Topic*
Gene Expression*
Gene Expression Profiling*
Oligonucleotide Array Sequence Analysis*
Liver Diseases/*genetics
Computational Biology ; Humans ; Software ; Translational Research, Biomedical
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Microarray analysis reveals the inhibition of intestinal expression of nutrient transporters in piglets infected with porcine epidemic diarrhea virus.
Autorzy:
Zhang J; Hubei Key Laboratory of Animal Nutrition and Feed Science, Wuhan Polytechnic University, Wuhan, 430023, China.
Zhao D; Hubei Key Laboratory of Animal Nutrition and Feed Science, Wuhan Polytechnic University, Wuhan, 430023, China.
Yi D; Hubei Key Laboratory of Animal Nutrition and Feed Science, Wuhan Polytechnic University, Wuhan, 430023, China.
Wu M; Hubei Key Laboratory of Animal Nutrition and Feed Science, Wuhan Polytechnic University, Wuhan, 430023, China.
Chen H; Hubei Key Laboratory of Animal Nutrition and Feed Science, Wuhan Polytechnic University, Wuhan, 430023, China.
Wu T; Hubei Key Laboratory of Animal Nutrition and Feed Science, Wuhan Polytechnic University, Wuhan, 430023, China.
Zhou J; Hubei Key Laboratory of Animal Nutrition and Feed Science, Wuhan Polytechnic University, Wuhan, 430023, China.
Li P; Hubei Key Laboratory of Animal Nutrition and Feed Science, Wuhan Polytechnic University, Wuhan, 430023, China.
Hou Y; Hubei Key Laboratory of Animal Nutrition and Feed Science, Wuhan Polytechnic University, Wuhan, 430023, China. .
Wu G; Department of Animal Science, Texas A&M University, College Station, Texas, 77843, USA.
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Źródło:
Scientific reports [Sci Rep] 2019 Dec 24; Vol. 9 (1), pp. 19798. Date of Electronic Publication: 2019 Dec 24.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Oligonucleotide Array Sequence Analysis*
Porcine epidemic diarrhea virus*
Coronavirus Infections/*veterinary
Intestines/*virology
Amino Acid Transport System y+L/metabolism ; Amino Acid Transport Systems, Basic/metabolism ; Animals ; Diarrhea/veterinary ; Diarrhea/virology ; Female ; Gene Expression Profiling ; Ileum/metabolism ; Interferon-alpha/metabolism ; Intestines/pathology ; Jejunum/metabolism ; MAP Kinase Signaling System ; NF-kappa B/metabolism ; Peptide Transporter 1/metabolism ; Phosphatidylinositol 3-Kinases/metabolism ; RNA/metabolism ; RNA, Messenger/metabolism ; Swine ; Swine Diseases/virology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Transcriptomic responses in mouse blood during the first week after in vivo gamma irradiation.
Autorzy:
Paul S; Center for Radiological Research, Vagelos College of Physicians and Surgeons, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Kleiman NJ; Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Amundson SA; Center for Radiological Research, Vagelos College of Physicians and Surgeons, Columbia University Irving Medical Center, New York, NY, 10032, USA. .
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Źródło:
Scientific reports [Sci Rep] 2019 Dec 04; Vol. 9 (1), pp. 18364. Date of Electronic Publication: 2019 Dec 04.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.
MeSH Terms:
Oligonucleotide Array Sequence Analysis*
Gene Expression Regulation/*radiation effects
Transcriptome/*radiation effects
Animals ; Cluster Analysis ; Disease Models, Animal ; Gamma Rays/adverse effects ; Gene Expression Regulation/genetics ; Gene Ontology ; Humans ; Mice ; Neutrons/adverse effects ; Radiation Dosage
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Molecular signatures of retinal ganglion cells revealed through single cell profiling.
Autorzy:
Laboissonniere LA; Department of Molecular Genetics and Microbiology 2033 Mowry Road, University of Florida, Gainesville, FL, 32610, USA.
Goetz JJ; Departments of Ophthalmology and Physiology, Feinberg School of Medicine Northwestern University, Chicago, IL, 60611, USA.
Martin GM; Oregon Health and Science University, Portland, OR, 97239, USA.
Bi R; Department of Statistics, 2117 Snedecor Hall, Iowa State University, Ames, IA, 50011, USA.
Lund TJS; Department of Genetics, Development and Cell Biology 2437 Pammel Drive, 2114 Molecular Biology, Iowa State University, Ames, IA, 50011, USA.
Ellson L; Department of Genetics, Development and Cell Biology 2437 Pammel Drive, 2114 Molecular Biology, Iowa State University, Ames, IA, 50011, USA.
Lynch MR; Department of Genetics, Development and Cell Biology 2437 Pammel Drive, 2114 Molecular Biology, Iowa State University, Ames, IA, 50011, USA.
Mooney B; Department of Genetics, Development and Cell Biology 2437 Pammel Drive, 2114 Molecular Biology, Iowa State University, Ames, IA, 50011, USA.
Wickham H; Department of Genetics, Development and Cell Biology 2437 Pammel Drive, 2114 Molecular Biology, Iowa State University, Ames, IA, 50011, USA.
Liu P; Department of Statistics, 2117 Snedecor Hall, Iowa State University, Ames, IA, 50011, USA.
Schwartz GW; Departments of Ophthalmology and Physiology, Feinberg School of Medicine Northwestern University, Chicago, IL, 60611, USA.
Trimarchi JM; Emmune, Inc, 14155 U.S Highway 1, Juno Beach, FL, 33408, USA. .
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Źródło:
Scientific reports [Sci Rep] 2019 Oct 31; Vol. 9 (1), pp. 15778. Date of Electronic Publication: 2019 Oct 31.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Profiling*
Gene Expression Regulation*
Oligonucleotide Array Sequence Analysis*
Single-Cell Analysis*
Eye Proteins/*biosynthesis
Retinal Ganglion Cells/*metabolism
Animals ; Eye Proteins/genetics ; Mice ; Mice, Transgenic ; Retinal Ganglion Cells/cytology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Rapid pathogen identification using a novel microarray-based assay with purulent meningitis in cerebrospinal fluid.
Autorzy:
Hou Y; Department of Cerebrospinal Fluid Laboratory, The General Hospital of Ningxia Medical University, Yinchuan, Ningxia, 750004, China.; Ningxia Key Laboratory of Cerebrocranial Diseases, Ningxia Medical University, Yinchuan, Ningxia, 750004, China.
Zhang X; Department of Beijing National Biochip Research Center sub-center in Ningxia, General Hospital of Ningxia Medical University, Yinchuan, Ningxia, 750004, China.
Hou X; Neurology Center, The General Hospital of Ningxia Medical University, Yinchuan, Ningxia, 750004, China.
Wu R; Department of Cerebrospinal Fluid Laboratory, The General Hospital of Ningxia Medical University, Yinchuan, Ningxia, 750004, China.; Ningxia Key Laboratory of Cerebrocranial Diseases, Ningxia Medical University, Yinchuan, Ningxia, 750004, China.
Wang Y; Department of Cerebrospinal Fluid Laboratory, The General Hospital of Ningxia Medical University, Yinchuan, Ningxia, 750004, China.; Ningxia Key Laboratory of Cerebrocranial Diseases, Ningxia Medical University, Yinchuan, Ningxia, 750004, China.
He X; Department of Cerebrospinal Fluid Laboratory, The General Hospital of Ningxia Medical University, Yinchuan, Ningxia, 750004, China.; Ningxia Key Laboratory of Cerebrocranial Diseases, Ningxia Medical University, Yinchuan, Ningxia, 750004, China.
Wang L; Department of Beijing National Biochip Research Center sub-center in Ningxia, General Hospital of Ningxia Medical University, Yinchuan, Ningxia, 750004, China.
Wang Z; Department of Cerebrospinal Fluid Laboratory, The General Hospital of Ningxia Medical University, Yinchuan, Ningxia, 750004, China. .; Ningxia Key Laboratory of Cerebrocranial Diseases, Ningxia Medical University, Yinchuan, Ningxia, 750004, China. .; Neurology Center, The General Hospital of Ningxia Medical University, Yinchuan, Ningxia, 750004, China. .
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Źródło:
Scientific reports [Sci Rep] 2018 Oct 29; Vol. 8 (1), pp. 15965. Date of Electronic Publication: 2018 Oct 29.
Typ publikacji:
Evaluation Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Oligonucleotide Array Sequence Analysis*
DNA, Bacterial/*cerebrospinal fluid
Meningitis, Bacterial/*microbiology
Tissue Array Analysis/*methods
Adolescent ; Adult ; Aged ; Bacteriological Techniques ; Cerebrospinal Fluid/microbiology ; Child ; Child, Preschool ; DNA, Bacterial/isolation & purification ; Female ; Genes, Bacterial ; Humans ; Infant ; Male ; Meningitis, Bacterial/cerebrospinal fluid ; Meningitis, Bacterial/diagnosis ; Middle Aged ; Polymerase Chain Reaction/methods ; Ribotyping/methods ; Sensitivity and Specificity ; Young Adult
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Identification and validation of an autophagy-related gene signature for predicting prognosis in patients with esophageal squamous cell carcinoma.
Autorzy:
Shi X; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Li Y; Department of Peripheral Vascular, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Pan S; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Liu X; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Ke Y; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Guo W; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Wang Y; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Ruan Q; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Zhang X; Department of Radiation Oncology, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Ma H; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China. .
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Źródło:
Scientific reports [Sci Rep] 2022 Feb 04; Vol. 12 (1), pp. 1960. Date of Electronic Publication: 2022 Feb 04.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*
Transcriptome*
Autophagy/*genetics
Autophagy-Related Proteins/*genetics
Esophageal Neoplasms/*genetics
Esophageal Squamous Cell Carcinoma/*genetics
Esophageal Neoplasms/mortality ; Esophageal Neoplasms/pathology ; Esophageal Neoplasms/therapy ; Esophageal Squamous Cell Carcinoma/mortality ; Esophageal Squamous Cell Carcinoma/pathology ; Esophageal Squamous Cell Carcinoma/therapy ; Humans ; Oligonucleotide Array Sequence Analysis ; Predictive Value of Tests ; Prognosis ; Risk Assessment ; Risk Factors ; Time Factors
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Transcriptomics and network analysis highlight potential pathways in the pathogenesis of pterygium.
Autorzy:
de Guimarães JA; Department of Ophthalmology and Otorhinolaryngology, School of Medical Sciences, University of Campinas (UNICAMP), Rua Tessália Vieira de Camargo. Cidade Universitária, Campinas, São Paulo, 13083887, Brazil.
Hounpke BW; Bone Metabolism Laboratory, FMUSP, University of Sao Paulo, São Paulo, SP, Brazil.
Duarte B; Department of Ophthalmology and Otorhinolaryngology, School of Medical Sciences, University of Campinas (UNICAMP), Rua Tessália Vieira de Camargo. Cidade Universitária, Campinas, São Paulo, 13083887, Brazil.
Boso ALM; Department of Ophthalmology and Otorhinolaryngology, School of Medical Sciences, University of Campinas (UNICAMP), Rua Tessália Vieira de Camargo. Cidade Universitária, Campinas, São Paulo, 13083887, Brazil.
Viturino MGM; Department of Ophthalmology and Otorhinolaryngology, School of Medical Sciences, University of Campinas (UNICAMP), Rua Tessália Vieira de Camargo. Cidade Universitária, Campinas, São Paulo, 13083887, Brazil.
de Carvalho Baptista L; Center for Molecular Biology and Genetic Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil.
de Melo MB; Center for Molecular Biology and Genetic Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil.
Alves M; Department of Ophthalmology and Otorhinolaryngology, School of Medical Sciences, University of Campinas (UNICAMP), Rua Tessália Vieira de Camargo. Cidade Universitária, Campinas, São Paulo, 13083887, Brazil. .
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Źródło:
Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 286. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji:
Journal Article; Meta-Analysis; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*
Gene Regulatory Networks*
Transcriptome*
MicroRNAs/*genetics
Pterygium/*genetics
RNA, Messenger/*genetics
Adult ; Aged ; Databases, Genetic ; Female ; Gene Expression Regulation ; Humans ; Male ; Middle Aged ; Oligonucleotide Array Sequence Analysis ; Pterygium/physiopathology ; Pterygium/surgery
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Integrated bioinformatics and network pharmacology to identify the therapeutic target and molecular mechanisms of Huangqin decoction on ulcerative Colitis.
Autorzy:
Wu Y; First Teaching Hospital of Tianjin University of Traditional Chinese Medicine, Tianjin, 300000, China. wuyi_.; National Clinical Research Center for Chinese Medicine Acupuncture and Moxibustion, Tianjin, 300000, China. wuyi_.
Liu X; First Teaching Hospital of Tianjin University of Traditional Chinese Medicine, Tianjin, 300000, China.
Li G; First Teaching Hospital of Tianjin University of Traditional Chinese Medicine, Tianjin, 300000, China.
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Źródło:
Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 159. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Computational Biology*
Network Pharmacology*
Scutellaria baicalensis*/chemistry
Systems Integration*
Anti-Inflammatory Agents/*pharmacology
Colitis, Ulcerative/*drug therapy
Colon/*drug effects
Drugs, Chinese Herbal/*pharmacology
Gastrointestinal Agents/*pharmacology
Anti-Inflammatory Agents/isolation & purification ; Colitis, Ulcerative/immunology ; Colitis, Ulcerative/metabolism ; Colitis, Ulcerative/pathology ; Colon/immunology ; Colon/metabolism ; Colon/pathology ; Cyclooxygenase 2/genetics ; Cyclooxygenase 2/metabolism ; Cytokines/metabolism ; Databases, Genetic ; Drugs, Chinese Herbal/isolation & purification ; Estrogen Receptor alpha/genetics ; Estrogen Receptor alpha/metabolism ; Flavanones/isolation & purification ; Flavanones/pharmacology ; Gastrointestinal Agents/isolation & purification ; Gene Regulatory Networks ; Humans ; Molecular Docking Simulation ; Oligonucleotide Array Sequence Analysis ; PPAR gamma/genetics ; PPAR gamma/metabolism ; Protein Interaction Maps ; Quercetin/isolation & purification ; Quercetin/pharmacology ; Th17 Cells/drug effects ; Th17 Cells/immunology ; Th17 Cells/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Identification and validation of plasma biomarkers for diagnosis of breast cancer in South Asian women.
Autorzy:
Rajkumar T; Department of Molecular Oncology, Cancer Institute (WIA), 38, Sardar Patel Road, Chennai, 600036, India. .
Amritha S; Department of Molecular Oncology, Cancer Institute (WIA), 38, Sardar Patel Road, Chennai, 600036, India.
Sridevi V; Department of Surgical Oncology, Cancer Institute (WIA), 38, Sardar Patel Road, Chennai, 600036, India.
Gopal G; Department of Molecular Oncology, Cancer Institute (WIA), 38, Sardar Patel Road, Chennai, 600036, India.
Sabitha K; Department of Molecular Oncology, Cancer Institute (WIA), 38, Sardar Patel Road, Chennai, 600036, India.
Shirley S; Department of Pathology, Cancer Institute (WIA), 38, Sardar Patel Road, Chennai, 600036, India.
Swaminathan R; Department of Epidemiology and Biostatistics, Cancer Institute (WIA), 38, Sardar Patel Road, Chennai, 600036, India.
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Źródło:
Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 100. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji:
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't; Validation Study
MeSH Terms:
Gene Expression Profiling*
Biomarkers, Tumor/*genetics
Breast Neoplasms/*diagnosis
Adaptor Proteins, Signal Transducing/blood ; Adaptor Proteins, Signal Transducing/genetics ; Adult ; Asian People/genetics ; Biomarkers, Tumor/blood ; Breast Neoplasms/blood ; Breast Neoplasms/ethnology ; Breast Neoplasms/genetics ; Case-Control Studies ; DNA Methylation ; Epigenesis, Genetic ; Female ; Humans ; India ; MCF-7 Cells ; Middle Aged ; Oligonucleotide Array Sequence Analysis ; Predictive Value of Tests ; Real-Time Polymerase Chain Reaction ; Reproducibility of Results ; Transcriptome
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Systems biology and machine learning approaches identify drug targets in diabetic nephropathy.
Autorzy:
Abedi M; Regenerative Medicine Research Center, Isfahan University of Medical Sciences, Isfahan, Iran.
Marateb HR; Biomedical Engineering Department, Engineering Faculty, University of Isfahan, Isfahan, Iran.; Department of Automatic Control, Biomedical Engineering Research Center, Universitat Politècnica de Catalunya, BarcelonaTech (UPC), Barcelona, Spain.
Mohebian MR; Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Canada.
Aghaee-Bakhtiari SH; Bioinformatics Research Group, Mashhad University of Medical Sciences, Mashhad, Iran.; Department of Medical Biotechnology and Nanotechnology, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran.
Nassiri SM; Department of Clinical Pathology, Faculty of Veterinary Medicine, University of Tehran, Tehran, Iran.
Gheisari Y; Regenerative Medicine Research Center, Isfahan University of Medical Sciences, Isfahan, Iran. .; Department of Genetics and Molecular Biology, Isfahan University of Medical Sciences, Isfahan, Iran. .
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Źródło:
Scientific reports [Sci Rep] 2021 Dec 06; Vol. 11 (1), pp. 23452. Date of Electronic Publication: 2021 Dec 06.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Machine Learning*
Systems Biology*
Diabetic Nephropathies/*drug therapy
Algorithms ; Animals ; Chemistry, Pharmaceutical/methods ; Cluster Analysis ; Computational Biology/methods ; Drug Design ; Epigenesis, Genetic ; Gene Expression Profiling/methods ; Gene Regulatory Networks ; Global Health ; Humans ; Kidney Cortex/drug effects ; Kidney Medulla/drug effects ; Linear Models ; Male ; Mice ; Mice, Inbred DBA ; MicroRNAs/genetics ; Microarray Analysis ; Oligonucleotide Array Sequence Analysis ; Principal Component Analysis ; Regression Analysis ; Signal Transduction ; Support Vector Machine
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Wyświetlanie 1-20 z 1186

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