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Tytuł:
Roastgsa: a comparison of rotation-based scores for gene set enrichment analysis.
Autorzy:
Caballé-Mestres A; Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Baldiri Reixac, 10, 08028, Barcelona, Spain.
Berenguer-Llergo A; Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Baldiri Reixac, 10, 08028, Barcelona, Spain.
Stephan-Otto Attolini C; Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Baldiri Reixac, 10, 08028, Barcelona, Spain. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Oct 30; Vol. 24 (1), pp. 408. Date of Electronic Publication: 2023 Oct 30.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Profiling*/methods
Algorithms*
Rotation ; Oligonucleotide Array Sequence Analysis/methods ; Phenotype
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Genealyzer: web application for the analysis and comparison of gene expression data.
Autorzy:
Lietz K; Research Group Bioinformatics, Fraunhofer ITEM, Hannover, Germany.
Saremi B; Research Group Bioinformatics, Fraunhofer ITEM, Hannover, Germany.
Wiese L; Research Group Bioinformatics, Fraunhofer ITEM, Hannover, Germany. .; Institute of Computer Science, Department of Mathematics and Computer Science, Goethe University, Frankfurt, Germany. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Apr 17; Vol. 24 (1), pp. 150. Date of Electronic Publication: 2023 Apr 17.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Gene Expression Profiling*/methods
Oligonucleotide Array Sequence Analysis/methods ; Reproducibility of Results ; Retrospective Studies ; Gene Expression ; Internet
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Multiple Criteria Optimization (MCO): A gene selection deterministic tool in RStudio.
Autorzy:
Narváez-Bandera I; Bioengineering Graduate Program, The Applied Optimization Group, University of Puerto Rico-Mayagüez, Mayagüez, Puerto Rico.
Suárez-Gómez D; Bioengineering Graduate Program, The Applied Optimization Group, University of Puerto Rico-Mayagüez, Mayagüez, Puerto Rico.
Isaza CE; Bioengineering Graduate Program, The Applied Optimization Group, University of Puerto Rico-Mayagüez, Mayagüez, Puerto Rico.; Public Health Program, Ponce Health Sciences University, Ponce, Puerto Rico.; Basic Sciences Department, Ponce Health Sciences University, Ponce, Puerto Rico.; Biology Department, University of Puerto Rico-Mayagüez, Mayagüez, Puerto Rico.
Cabrera-Ríos M; Bioengineering Graduate Program, The Applied Optimization Group, University of Puerto Rico-Mayagüez, Mayagüez, Puerto Rico.; Industrial Engineering Department, The Applied Optimization Group, University of Puerto Rico-Mayagüez, Mayagüez, Puerto Rico.
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Źródło:
PloS one [PLoS One] 2022 Jan 27; Vol. 17 (1), pp. e0262890. Date of Electronic Publication: 2022 Jan 27 (Print Publication: 2022).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Algorithms*
Databases, Nucleic Acid*
Gene Expression Profiling*
Oligonucleotide Array Sequence Analysis*
Software*
Humans
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Comparison of sparse biclustering algorithms for gene expression datasets.
Autorzy:
Nicholls K; Cambridge Institute for Therapeutic Immunology and Infectious Disease, University of Cambridge, Cambridge, CB2 0AW, UK.
Wallace C; Cambridge Institute for Therapeutic Immunology and Infectious Disease, University of Cambridge, Cambridge, CB2 0AW, UK.; MRC Biostatistics Unit, Cambridge Biomedical Campus, Forvie Site, Robinson Way, Cambridge, CB2 0SR, UK.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Nov 05; Vol. 22 (6).
Typ publikacji:
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Algorithms*
Databases, Genetic*
Gene Expression Profiling*
Gene Expression Regulation*
Oligonucleotide Array Sequence Analysis*
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Loss of Gene Information: Discrepancies between RNA Sequencing, cDNA Microarray, and qRT-PCR.
Autorzy:
Rachinger N; Institute of Biochemistry, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Fahrstraße 17, 91054 Erlangen, Germany.
Fischer S; Faculty of Computer Science, Deggendorf Institute of Technology, Dieter-Görlitz-Platz 1, 94469 Deggendorf, Germany.
Böhme I; Institute of Biochemistry, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Fahrstraße 17, 91054 Erlangen, Germany.
Linck-Paulus L; Institute of Biochemistry, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Fahrstraße 17, 91054 Erlangen, Germany.
Kuphal S; Institute of Biochemistry, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Fahrstraße 17, 91054 Erlangen, Germany.
Kappelmann-Fenzl M; Faculty of Computer Science, Deggendorf Institute of Technology, Dieter-Görlitz-Platz 1, 94469 Deggendorf, Germany.
Bosserhoff AK; Institute of Biochemistry, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Fahrstraße 17, 91054 Erlangen, Germany.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2021 Aug 28; Vol. 22 (17). Date of Electronic Publication: 2021 Aug 28.
Typ publikacji:
Comparative Study; Journal Article
MeSH Terms:
Oligonucleotide Array Sequence Analysis*
Reverse Transcriptase Polymerase Chain Reaction*
Sequence Analysis, RNA*
Gene Expression Profiling/*methods
Adaptor Proteins, Signal Transducing/genetics ; Cell Line, Tumor ; Humans ; Intracellular Signaling Peptides and Proteins/genetics ; RNA/chemistry ; SOX Transcription Factors/genetics ; Transcription Factors/genetics ; Transcriptional Coactivator with PDZ-Binding Motif Proteins ; Transcriptome ; YAP-Signaling Proteins
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
A statistical network pre-processing method to improve relevance and significance of gene lists in microarray gene expression studies.
Autorzy:
Agapito G; Department of Law, Economics and Sociology Sciences, University Magna Græcia, 88100, Catanzaro, Italy. .; Data Analytics Research Center, University Magna Græcia, 88100, Catanzaro, Italy. .
Milano M; Data Analytics Research Center, University Magna Græcia, 88100, Catanzaro, Italy.; Department of Medical and Surgical Sciences, University Magna Græcia, 88100, Catanzaro, Italy.
Cannataro M; Data Analytics Research Center, University Magna Græcia, 88100, Catanzaro, Italy.; Department of Medical and Surgical Sciences, University Magna Græcia, 88100, Catanzaro, Italy.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2022 Sep 27; Vol. 23 (Suppl 6), pp. 393. Date of Electronic Publication: 2022 Sep 27.
Typ publikacji:
Journal Article
MeSH Terms:
Biological Phenomena*
Gene Expression Profiling*/methods
Gene Expression ; Oligonucleotide Array Sequence Analysis/methods ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A binary biclustering algorithm based on the adjacency difference matrix for gene expression data analysis.
Autorzy:
Chu HM; School of Computer Science, Qufu Normal University, Rizhao, 276826, China.
Liu JX; School of Computer Science, Qufu Normal University, Rizhao, 276826, China.
Zhang K; Department of Oncology, Rizhao People's Hospital, Rizhao, 276826, China. .
Zheng CH; School of Computer Science, Qufu Normal University, Rizhao, 276826, China.
Wang J; School of Computer Science, Qufu Normal University, Rizhao, 276826, China.
Kong XZ; School of Computer Science, Qufu Normal University, Rizhao, 276826, China. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2022 Sep 19; Vol. 23 (1), pp. 381. Date of Electronic Publication: 2022 Sep 19.
Typ publikacji:
Journal Article
MeSH Terms:
Data Analysis*
Gene Expression Profiling*/methods
Algorithms ; Gene Expression ; Oligonucleotide Array Sequence Analysis/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Sequencing dropout-and-batch effect normalization for single-cell mRNA profiles: a survey and comparative analysis.
Autorzy:
Lan T; Faculty of Engineering and IT in the University of Technology Sydney.
Hutvagner G; School of Biomedical Engineering, University of Technology Sydney.
Lan Q; Neurosurgical Department of Second Affiliated Hospital of Soochow University.
Liu T; Children's Cancer Institute Australia.
Li J; Faculty of Engineering and IT in the University of Technology Sydney.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Jul 20; Vol. 22 (4).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*
Oligonucleotide Array Sequence Analysis*
RNA, Messenger*/biosynthesis
RNA, Messenger*/genetics
Single-Cell Analysis*
Software*
Transcriptome*
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Comparison of machine-learning methodologies for accurate diagnosis of sepsis using microarray gene expression data.
Autorzy:
Schaack D; Department of Anesthesiology, Heidelberg University Hospital, Heidelberg, Germany.
Weigand MA; Department of Anesthesiology, Heidelberg University Hospital, Heidelberg, Germany.
Uhle F; Department of Anesthesiology, Heidelberg University Hospital, Heidelberg, Germany.
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Źródło:
PloS one [PLoS One] 2021 May 17; Vol. 16 (5), pp. e0251800. Date of Electronic Publication: 2021 May 17 (Print Publication: 2021).
Typ publikacji:
Journal Article
MeSH Terms:
Databases, Nucleic Acid*
Gene Expression Profiling*
Gene Expression Regulation*
Machine Learning*
Oligonucleotide Array Sequence Analysis*
Sepsis*/diagnosis
Sepsis*/genetics
Sepsis*/metabolism
Female ; Humans ; Male
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Biclustering fMRI time series: a comparative study.
Autorzy:
Castanho EN; LASIGE, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal.
Aidos H; LASIGE, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal.
Madeira SC; LASIGE, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2022 May 23; Vol. 23 (1), pp. 192. Date of Electronic Publication: 2022 May 23.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Profiling*/methods
Magnetic Resonance Imaging*
Algorithms ; Cluster Analysis ; Oligonucleotide Array Sequence Analysis/methods ; Time Factors
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Blood-based gene-expression biomarkers identification for the non-invasive diagnosis of Parkinson's disease using two-layer hybrid feature selection.
Autorzy:
Augustine J; Bioinformatics Lab, Department of Computer Science, Cochin University of Science and Technology, Kerala 682022, India. Electronic address: .
Jereesh AS; Bioinformatics Lab, Department of Computer Science, Cochin University of Science and Technology, Kerala 682022, India. Electronic address: .
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Źródło:
Gene [Gene] 2022 May 20; Vol. 823, pp. 146366. Date of Electronic Publication: 2022 Feb 22.
Typ publikacji:
Journal Article
MeSH Terms:
Genetic Markers*
Computational Biology/*methods
Gene Expression Profiling/*methods
Parkinson Disease/*diagnosis
Blood Chemical Analysis ; Databases, Genetic ; Deep Learning ; Early Diagnosis ; Gene Expression Regulation ; Humans ; Logistic Models ; Oligonucleotide Array Sequence Analysis ; Parkinson Disease/blood ; Parkinson Disease/genetics ; Supervised Machine Learning
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Identification of drug combinations on the basis of machine learning to maximize anti-aging effects.
Autorzy:
Kim SK; College of Pharmacy, Kyung Hee University, Seoul, Republic of Korea.
Goughnour PC; College of Pharmacy, Kyung Hee University, Seoul, Republic of Korea.
Lee EJ; College of Pharmacy, Kyung Hee University, Seoul, Republic of Korea.
Kim MH; Center for Research and Development, Oncocross Ltd., Seoul, Republic of Korea.
Chae HJ; Center for Research and Development, Oncocross Ltd., Seoul, Republic of Korea.
Yun GY; Center for Research and Development, Oncocross Ltd., Seoul, Republic of Korea.
Kim YR; Center for Research and Development, Oncocross Ltd., Seoul, Republic of Korea.; Department of Hematology/Oncology, Yuseong Sun Hospital, Daejeon, Republic of Korea.
Choi JW; College of Pharmacy, Kyung Hee University, Seoul, Republic of Korea.; Department of Life and Nano-pharmaceutical Sciences, Kyung Hee University, Seoul, Republic of Korea.
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Źródło:
PloS one [PLoS One] 2021 Jan 28; Vol. 16 (1), pp. e0246106. Date of Electronic Publication: 2021 Jan 28 (Print Publication: 2021).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Aging*
Gene Expression Profiling*
Gene Expression Regulation, Leukemic*
Leukemia, Myeloid, Acute*/drug therapy
Leukemia, Myeloid, Acute*/metabolism
Leukemia, Myeloid, Acute*/pathology
Machine Learning*
Oligonucleotide Array Sequence Analysis*
Antineoplastic Combined Chemotherapy Protocols/*pharmacology
HL-60 Cells ; Humans
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Covariance matrix filtering with bootstrapped hierarchies.
Autorzy:
Bongiorno C; Université Paris-Saclay, CentraleSupélec, Mathématiques et Informatique pour la Complexité et les Systèmes, Gif-sur-Yvette, France.
Challet D; Université Paris-Saclay, CentraleSupélec, Mathématiques et Informatique pour la Complexité et les Systèmes, Gif-sur-Yvette, France.
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Źródło:
PloS one [PLoS One] 2021 Jan 14; Vol. 16 (1), pp. e0245092. Date of Electronic Publication: 2021 Jan 14 (Print Publication: 2021).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Algorithms*
Computer Simulation*
Gene Expression Profiling*
Oligonucleotide Array Sequence Analysis*
Cluster Analysis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Identification of differentially expressed miRNA 48 h after cerebral ischemia-reperfusion injury in mice by the technique of miRNA microarray.
Autorzy:
Zhang Y; The Heart Center, Beijing Friendship Hospital, Capital Medical University, Beijing, China 100050.
Ding N; Cardiovascular Surgery II, Beijing Children's Hospital, Capital Medical University, National Center for Children's Health, Beijing, China 100045.
Yi H; Cardiovascular Surgery II, Beijing Children's Hospital, Capital Medical University, National Center for Children's Health, Beijing, China 100045.
Zhao Y; Cardiovascular Surgery II, Beijing Children's Hospital, Capital Medical University, National Center for Children's Health, Beijing, China 100045.
Ye Z; Cardiovascular Surgery II, Beijing Children's Hospital, Capital Medical University, National Center for Children's Health, Beijing, China 100045.
Shen L; Cardiovascular Surgery II, Beijing Children's Hospital, Capital Medical University, National Center for Children's Health, Beijing, China 100045.
Li Z; Cardiovascular Surgery II, Beijing Children's Hospital, Capital Medical University, National Center for Children's Health, Beijing, China 100045.
Zhu Y; Cardiovascular Surgery II, Beijing Children's Hospital, Capital Medical University, National Center for Children's Health, Beijing, China 100045.
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Źródło:
Canadian journal of physiology and pharmacology [Can J Physiol Pharmacol] 2020 Dec; Vol. 98 (12), pp. 855-860. Date of Electronic Publication: 2020 Jun 09.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Profiling*
Oligonucleotide Array Sequence Analysis*
Brain Ischemia/*complications
MicroRNAs/*genetics
Reperfusion Injury/*complications
Reperfusion Injury/*genetics
Animals ; Mice
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Clinical validation of a 90-gene expression test for tumor tissue of origin diagnosis: a large-scale multicenter study of 1417 patients.
Autorzy:
Sun W; Department of Pathology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, No.52 Fucheng Road, Wu Ke Song, Haidian District, Beijing, China.
Wu W; Department of Pathology, Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), No.1 East Road of Banshan, Hangzhou, Zhejiang, China.
Wang Q; Department of Pathology, Fudan University Shanghai Cancer Center, No.270 Dong'An Road, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.; Institute of Pathology, Fudan University, Shanghai, China.; The Cancer of Unknown Primary Group of Pathology Committee, Chinese Research Hospital Association, Shanghai, China.
Yao Q; Department of Pathology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, No.52 Fucheng Road, Wu Ke Song, Haidian District, Beijing, China.
Feng Q; Department of Pathology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, No.52 Fucheng Road, Wu Ke Song, Haidian District, Beijing, China.
Wang Y; Department of Pathology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, No.52 Fucheng Road, Wu Ke Song, Haidian District, Beijing, China.
Sun Y; Department of Pathology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, No.52 Fucheng Road, Wu Ke Song, Haidian District, Beijing, China.
Liu Y; Department of Pathology, Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), No.1 East Road of Banshan, Hangzhou, Zhejiang, China.
Lai Q; Department of Pathology, Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), No.1 East Road of Banshan, Hangzhou, Zhejiang, China.
Zhang G; Department of Pathology, Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), No.1 East Road of Banshan, Hangzhou, Zhejiang, China.
Qi P; Department of Pathology, Fudan University Shanghai Cancer Center, No.270 Dong'An Road, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.; Institute of Pathology, Fudan University, Shanghai, China.; The Cancer of Unknown Primary Group of Pathology Committee, Chinese Research Hospital Association, Shanghai, China.
Sun Y; The Canhelp Genomics Research Center, Canhelp Genomics Co., Ltd., Hangzhou, China.
Qian C; The Canhelp Genomics Research Center, Canhelp Genomics Co., Ltd., Hangzhou, China.
Ren W; The Canhelp Genomics Research Center, Canhelp Genomics Co., Ltd., Hangzhou, China.
Luo Z; The Canhelp Genomics Research Center, Canhelp Genomics Co., Ltd., Hangzhou, China.
Chen J; The Canhelp Genomics Research Center, Canhelp Genomics Co., Ltd., Hangzhou, China.
Wang H; The Canhelp Genomics Research Center, Canhelp Genomics Co., Ltd., Hangzhou, China.
Xu Q; The Cancer of Unknown Primary Group of Pathology Committee, Chinese Research Hospital Association, Shanghai, China.; The Canhelp Genomics Research Center, Canhelp Genomics Co., Ltd., Hangzhou, China.; The Institute of Machine Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Shanghai, China.; Xuzhou Engineering Research Center of Medical Genetics and Transformation, Department of Genetics, Xuzhou Medical University, Xuzhou, China.
Zhou X; Department of Pathology, Fudan University Shanghai Cancer Center, No.270 Dong'An Road, Shanghai, China. .; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China. .; Institute of Pathology, Fudan University, Shanghai, China. .; The Cancer of Unknown Primary Group of Pathology Committee, Chinese Research Hospital Association, Shanghai, China. .
Sun W; Department of Pathology, Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), No.1 East Road of Banshan, Hangzhou, Zhejiang, China. .
Lin D; Department of Pathology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, No.52 Fucheng Road, Wu Ke Song, Haidian District, Beijing, China. .
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Źródło:
Journal of translational medicine [J Transl Med] 2022 Mar 07; Vol. 20 (1), pp. 114. Date of Electronic Publication: 2022 Mar 07.
Typ publikacji:
Journal Article; Multicenter Study; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*/methods
Head and Neck Neoplasms*
Biomarkers, Tumor/genetics ; Gene Expression ; Humans ; Male ; Oligonucleotide Array Sequence Analysis/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Bortezomib-Induced Epigenetic Alterations in Nerve Cells: Focus on the Mechanisms Contributing to the Peripheral Neuropathy Development.
Autorzy:
Łuczkowska K; Department of General Pathology, Pomeranian Medical University, 70-111 Szczecin, Poland.
Rogińska D; Department of General Pathology, Pomeranian Medical University, 70-111 Szczecin, Poland.
Kulig P; Department of General Pathology, Pomeranian Medical University, 70-111 Szczecin, Poland.
Bielikowicz A; Department of General Pathology, Pomeranian Medical University, 70-111 Szczecin, Poland.
Baumert B; Department of Bone Marrow Transplantation, Pomeranian Medical University, 71-252 Szczecin, Poland.
Machaliński B; Department of General Pathology, Pomeranian Medical University, 70-111 Szczecin, Poland.; Department of Bone Marrow Transplantation, Pomeranian Medical University, 71-252 Szczecin, Poland.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2022 Feb 23; Vol. 23 (5). Date of Electronic Publication: 2022 Feb 23.
Typ publikacji:
Journal Article
MeSH Terms:
Bortezomib/*adverse effects
Gene Expression Profiling/*methods
Histones/*metabolism
MicroRNAs/*genetics
Neurons/*cytology
Acetylation ; Amino Acid Transport System ASC/genetics ; Cell Line ; Cell Proliferation/drug effects ; Cell Survival/drug effects ; Epigenesis, Genetic/drug effects ; Forkhead Box Protein M1/genetics ; Gene Expression Regulation/drug effects ; Gene Regulatory Networks/drug effects ; Histone Code/drug effects ; Histones/drug effects ; Humans ; Microfilament Proteins/genetics ; Minor Histocompatibility Antigens/genetics ; Neurons/drug effects ; Neurons/metabolism ; Oligonucleotide Array Sequence Analysis ; Tetraspanins/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Healthcare Biclustering-Based Prediction on Gene Expression Dataset.
Autorzy:
Ramkumar M; Department of Computer Science and Engineering, HKBK College of Engineering, India.
Basker N; Department of Computer Science and Engineering, Sona College of Technology, India.
Pradeep D; Department of Computer Science and Engineering, M.Kumarasamy College of Engineering, Karur, India.
Prajapati R; Department of Computer Engineering, Shree Swaminarayan Institute of Technology (SSIT), India.
Yuvaraj N; Research and Publications, ICT Academy, IIT Madras Research Park, India.
Arshath Raja R; Research and Publications, ICT Academy, IIT Madras Research Park, India.
Suresh C; CSE, Sri Ranganathar Institute of Engineering and Technology, Coimbatore, India.
Vignesh R; CSE, Dhanalakshmi Srinivasan College of Engineering, Coimbatore, India.
Barakkath Nisha U; IT Department, Sri Krishna College of Engineering and Technology, Coimbatore, India.
Srihari K; Department of Computer Science and Engineering, SNS College of Technology, India.
Alene A; Department of Chemical Engineering, College of Biological and Chemical Engineering, Addis Ababa Science and Technology University, Ethiopia.
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Źródło:
BioMed research international [Biomed Res Int] 2022 Feb 22; Vol. 2022, pp. 2263194. Date of Electronic Publication: 2022 Feb 22 (Print Publication: 2022).
Typ publikacji:
Journal Article; Retracted Publication
MeSH Terms:
Algorithms*
Gene Expression Profiling*/methods
Cluster Analysis ; Delivery of Health Care ; Gene Expression ; Oligonucleotide Array Sequence Analysis/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Identification and validation of an autophagy-related gene signature for predicting prognosis in patients with esophageal squamous cell carcinoma.
Autorzy:
Shi X; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Li Y; Department of Peripheral Vascular, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Pan S; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Liu X; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Ke Y; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Guo W; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Wang Y; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Ruan Q; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Zhang X; Department of Radiation Oncology, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Ma H; Department of Radiation Oncology, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China. .
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Źródło:
Scientific reports [Sci Rep] 2022 Feb 04; Vol. 12 (1), pp. 1960. Date of Electronic Publication: 2022 Feb 04.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*
Transcriptome*
Autophagy/*genetics
Autophagy-Related Proteins/*genetics
Esophageal Neoplasms/*genetics
Esophageal Squamous Cell Carcinoma/*genetics
Esophageal Neoplasms/mortality ; Esophageal Neoplasms/pathology ; Esophageal Neoplasms/therapy ; Esophageal Squamous Cell Carcinoma/mortality ; Esophageal Squamous Cell Carcinoma/pathology ; Esophageal Squamous Cell Carcinoma/therapy ; Humans ; Oligonucleotide Array Sequence Analysis ; Predictive Value of Tests ; Prognosis ; Risk Assessment ; Risk Factors ; Time Factors
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Increased comparability between RNA-Seq and microarray data by utilization of gene sets.
Autorzy:
van der Kloet FM; Swammerdam Institute for Life Sciences, University of Amsterdam.
Buurmans J; Swammerdam Institute for Life Sciences, University of Amsterdam.
Jonker MJ; Swammerdam Institute for Life Sciences, University of Amsterdam.
Smilde AK; Swammerdam Institute for Life Sciences, University of Amsterdam.
Westerhuis JA; Swammerdam Institute for Life Sciences, University of Amsterdam.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2020 Sep 30; Vol. 16 (9), pp. e1008295. Date of Electronic Publication: 2020 Sep 30 (Print Publication: 2020).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Genetic*
Oligonucleotide Array Sequence Analysis*
RNA-Seq*
Gene Expression Profiling/*methods
Breast Neoplasms/genetics ; Breast Neoplasms/metabolism ; Female ; Humans ; Reproducibility of Results ; Transcriptome/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Microarray Normalization Revisited for Reproducible Breast Cancer Biomarkers.
Autorzy:
Kenn M; Section of Biosimulation and Bioinformatics, Center for Medical Statistics, Informatics and Intelligent Systems (CeMSIIS), Medical University of Vienna, Spitalgasse 23, 1090 Vienna, Austria.
Cacsire Castillo-Tong D; Translational Gynecology Group, Department of Obstetrics and Gynecology, Comprehensive Cancer Center, Medical University of Vienna, Waehringer Guertel 18-20, 1090 Vienna, Austria.
Singer CF; Department of General Gynecology and Gynecologic Oncology and Comprehensive Cancer Center, Medical University of Vienna, Waehringer Guertel 18-20, 1090 Vienna, Austria.
Cibena M; Section of Biosimulation and Bioinformatics, Center for Medical Statistics, Informatics and Intelligent Systems (CeMSIIS), Medical University of Vienna, Spitalgasse 23, 1090 Vienna, Austria.
Kölbl H; Department of General Gynecology and Gynecologic Oncology and Comprehensive Cancer Center, Medical University of Vienna, Waehringer Guertel 18-20, 1090 Vienna, Austria.
Schreiner W; Section of Biosimulation and Bioinformatics, Center for Medical Statistics, Informatics and Intelligent Systems (CeMSIIS), Medical University of Vienna, Spitalgasse 23, 1090 Vienna, Austria.
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Źródło:
BioMed research international [Biomed Res Int] 2020 Aug 06; Vol. 2020, pp. 1363827. Date of Electronic Publication: 2020 Aug 06 (Print Publication: 2020).
Typ publikacji:
Journal Article
MeSH Terms:
Biomarkers, Tumor*/biosynthesis
Biomarkers, Tumor*/genetics
Breast Neoplasms*/genetics
Breast Neoplasms*/metabolism
Computational Biology*
Databases, Nucleic Acid*
Gene Expression Profiling*
Gene Expression Regulation, Neoplastic*
Oligonucleotide Array Sequence Analysis*
Female ; Humans
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Wyświetlanie 1-20 z 4463

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