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Wyszukujesz frazę ""Ontology"" wg kryterium: Temat


Tytuł :
Graph embeddings on gene ontology annotations for protein-protein interaction prediction.
Autorzy :
Zhong X; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China. .
Rajapakse JC; School of Computer Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore, Singapore.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2020 Dec 16; Vol. 21 (Suppl 16), pp. 560. Date of Electronic Publication: 2020 Dec 16.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Ontology*
Molecular Sequence Annotation*
Protein Interaction Mapping/*methods
Animals ; Area Under Curve ; Computational Biology/methods ; Humans ; Mice ; ROC Curve ; Saccharomyces cerevisiae/genetics ; Task Performance and Analysis
Czasopismo naukowe
Tytuł :
Identification of biological correlates associated with respiratory failure in COVID-19.
Autorzy :
Oh JH; Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY, USA. .
Tannenbaum A; Departments of Computer Science and Applied Mathematics & Statistics, Stony Brook University, Stony Brook, NY, USA.
Deasy JO; Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
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Źródło :
BMC medical genomics [BMC Med Genomics] 2020 Dec 11; Vol. 13 (1), pp. 186. Date of Electronic Publication: 2020 Dec 11.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Gene Ontology*
Polymorphism, Single Nucleotide*
SARS-CoV-2*
COVID-19/*genetics
Respiratory Insufficiency/*genetics
COVID-19/epidemiology ; Female ; Genome-Wide Association Study ; Humans ; Italy/epidemiology ; Male ; Respiratory Insufficiency/epidemiology ; Spain/epidemiology
Czasopismo naukowe
Tytuł :
Moving targets in drug discovery.
Autorzy :
Zdrazil B; Division of Drug Design and Medicinal Chemistry, Department of Pharmaceutical Chemistry, University of Vienna, Althanstrasse 14, 1090, Vienna, Austria. .
Richter L; Division of Drug Design and Medicinal Chemistry, Department of Pharmaceutical Chemistry, University of Vienna, Althanstrasse 14, 1090, Vienna, Austria.
Brown N; BenevolentAI, 4-8 Maple Street, London, W1T 5HD, UK.
Guha R; Vertex Pharmaceuticals, 50 Northern Avenue, Boston, MA, 02210, USA.
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Źródło :
Scientific reports [Sci Rep] 2020 Nov 19; Vol. 10 (1), pp. 20213. Date of Electronic Publication: 2020 Nov 19.
Typ publikacji :
Journal Article
MeSH Terms :
Drug Discovery*
Gene Ontology*
Databases, Factual ; Humans ; Software
Czasopismo naukowe
Tytuł :
Common gene signatures and key pathways in hypopharyngeal and esophageal squamous cell carcinoma: Evidence from bioinformatic analysis.
Autorzy :
Zhou R; Department of Oncology.
Liu D; Department of Orthopaedics, The First Affiliated Hospital of Chongqing Medical University, Chongqing, People's Republic of China.
Zhu J; Department of Oncology.
Zhang T; Department of Oncology.
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Źródło :
Medicine [Medicine (Baltimore)] 2020 Oct 16; Vol. 99 (42), pp. e22434.
Typ publikacji :
Journal Article; Meta-Analysis; Systematic Review
MeSH Terms :
Gene Expression Profiling*
Gene Expression Regulation, Neoplastic*
Gene Ontology*
Carcinoma, Squamous Cell/*genetics
Esophageal Neoplasms/*genetics
Pharyngeal Neoplasms/*genetics
Biomarkers, Tumor/genetics ; Computational Biology ; Databases, Genetic ; Humans ; Prognosis
Czasopismo naukowe
Tytuł :
Graph-based exploitation of gene ontology using GOxploreR for scrutinizing biological significance.
Autorzy :
Manjang K; Predictive Society and Data Analytics Lab, Tampere University, Tampere, Korkeakoulunkatu 10, 33720, Tampere, Finland.
Tripathi S; Predictive Society and Data Analytics Lab, Tampere University, Tampere, Korkeakoulunkatu 10, 33720, Tampere, Finland.
Yli-Harja O; Computational Systems Biology, Tampere University, Tampere, Korkeakoulunkatu 10, 33720, Tampere, Finland.; Institute for Systems Biology, Seattle, WA, USA.; Institute of Biosciences and Medical Technology, Tampere University, Tampere, Korkeakoulunkatu 10, 33720, Tampere, Finland.
Dehmer M; Department of Biomedical Computer Science and Mechatronics, UMIT-The Health and Life Science University, 6060, Hall in Tyrol, Austria.; College of Artificial Intelligence, Nankai University, Tianjin, 300350, China.
Emmert-Streib F; Predictive Society and Data Analytics Lab, Tampere University, Tampere, Korkeakoulunkatu 10, 33720, Tampere, Finland. .; Institute of Biosciences and Medical Technology, Tampere University, Tampere, Korkeakoulunkatu 10, 33720, Tampere, Finland. .
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 07; Vol. 10 (1), pp. 16672. Date of Electronic Publication: 2020 Oct 07.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Genetic*
Gene Ontology*
Software*
Humans
Czasopismo naukowe
Tytuł :
IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis.
Autorzy :
Politano G; Computer Science and Automation Department, Politecnico di Torino, Italy.
Benso A; Computer Science and Automation Department, Politecnico di Torino, Italy.
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Źródło :
PLoS computational biology [PLoS Comput Biol] 2020 Sep 30; Vol. 16 (9), pp. e1008238. Date of Electronic Publication: 2020 Sep 30 (Print Publication: 2020).
Typ publikacji :
Journal Article
MeSH Terms :
Gene Ontology*
Host-Pathogen Interactions*
Betacoronavirus/*physiology
Coronavirus Infections/*virology
Interleukin-6/*physiology
Pneumonia, Viral/*virology
Betacoronavirus/genetics ; COVID-19 ; Genes, Viral ; Humans ; Pandemics ; SARS-CoV-2 ; Viral Proteins/genetics ; Viral Proteins/physiology
Czasopismo naukowe
Tytuł :
Using an ontology of the human cardiovascular system to improve the classification of histological images.
Autorzy :
Mazo C; UCD School of Computer Science, University College Dublin, Dublin, Ireland. .; CeADAR: Centre for Applied Data Analytics Research, Dublin, Ireland. .
Alegre E; Industrial and Informatics Engineering School, Universidad de León, León, Spain.
Trujillo M; Computer and Systems Engineering School, Universidad del Valle, Cali, Colombia.
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Źródło :
Scientific reports [Sci Rep] 2020 Jul 23; Vol. 10 (1), pp. 12276. Date of Electronic Publication: 2020 Jul 23.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Cardiovascular Physiological Phenomena*
Computational Biology*/methods
Gene Ontology*
Histocytochemistry*/methods
Cardiovascular System/*cytology
Algorithms ; Animals ; Cardiovascular System/pathology ; Humans ; Image Processing, Computer-Assisted ; Support Vector Machine
Czasopismo naukowe
Tytuł :
Association study based on topological constraints of protein-protein interaction networks.
Autorzy :
Guo HB; Department of Computer Science and Engineering, The University of Tennessee, Chattanooga, USA. .; SimCenter, The University of Tennessee, Chattanooga, USA. .
Qin H; Department of Computer Science and Engineering, The University of Tennessee, Chattanooga, USA. .; SimCenter, The University of Tennessee, Chattanooga, USA. .; Department of Biology, Geology and Environmental Science, The University of Tennessee, Chattanooga, USA. .
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Źródło :
Scientific reports [Sci Rep] 2020 Jul 01; Vol. 10 (1), pp. 10797. Date of Electronic Publication: 2020 Jul 01.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Algorithms*
Computational Biology*
Gene Ontology*
Gene Regulatory Networks*
Models, Genetic*
Protein Interaction Maps*
Czasopismo naukowe
Tytuł :
Ab initio GO-based mining for non-tandem-duplicated functional clusters in three model plant diploid genomes.
Autorzy :
Bagnaresi P; CREA Research Centre for Genomics and Bioinformatics, Fiorenzuola d'Arda, Italy.
Cattivelli L; CREA Research Centre for Genomics and Bioinformatics, Fiorenzuola d'Arda, Italy.
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Źródło :
PloS one [PLoS One] 2020 Jun 19; Vol. 15 (6), pp. e0234782. Date of Electronic Publication: 2020 Jun 19 (Print Publication: 2020).
Typ publikacji :
Journal Article
MeSH Terms :
Gene Ontology*
Genome, Plant*
Arabidopsis/*genetics
Oryza/*genetics
Vitis/*genetics
Databases, Genetic ; Diploidy ; Gene Duplication ; Multigene Family ; Plant Proteins/genetics ; Signal Transduction
Czasopismo naukowe
Tytuł :
GSOAP: a tool for visualization of gene set over-representation analysis.
Autorzy :
Tokar T; Krembil Research Institute, UHN, 60 Leonard Avenue, Toronto, ON M5T 0S8, Canada.
Pastrello C; Krembil Research Institute, UHN, 60 Leonard Avenue, Toronto, ON M5T 0S8, Canada.
Jurisica I; Krembil Research Institute, UHN, 60 Leonard Avenue, Toronto, ON M5T 0S8, Canada.; Department of Computer Science, University of Toronto, Toronto, ON M5T 3A1, Canada.; Department of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada.; Institute of Neuroimmunology, Slovak Academy of Sciences, Dubravska cesta 9, SK-84510, Bratislava, Slovakia.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2020 May 01; Vol. 36 (9), pp. 2923-2925.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Ontology*
Software*
Cluster Analysis ; Gene Expression Regulation
Czasopismo naukowe
Tytuł :
GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions.
Autorzy :
Wang G; Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA.
Oh DH; Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA.
Dassanayake M; Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2020 Apr 10; Vol. 21 (1), pp. 139. Date of Electronic Publication: 2020 Apr 10.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Ontology*
User-Computer Interface*
Arabidopsis/genetics ; Arabidopsis/metabolism ; High-Throughput Screening Assays/methods ; Markov Chains ; Multigene Family ; Plant Roots/genetics ; Plant Roots/metabolism
Czasopismo naukowe
Tytuł :
Seeking for potential pathogenic genes of major depressive disorder in the Gene Expression Omnibus database.
Autorzy :
Feng J; Department of Cardiology, Pizhou Dongda Hospital, Pizhou, China.
Zhou Q; Department of Cardiology, Pizhou Dongda Hospital, Pizhou, China.
Gao W; Department of Cardiology, Pizhou Dongda Hospital, Pizhou, China.
Wu Y; Department of Cardiology, Pizhou Dongda Hospital, Pizhou, China.
Mu R; Department of Cardiology, Pizhou Dongda Hospital, Pizhou, China.
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Źródło :
Asia-Pacific psychiatry : official journal of the Pacific Rim College of Psychiatrists [Asia Pac Psychiatry] 2020 Mar; Vol. 12 (1), pp. e12379. Date of Electronic Publication: 2019 Dec 30.
Typ publikacji :
Journal Article
MeSH Terms :
Databases, Genetic*
Gene Expression*
Gene Ontology*
Protein Interaction Maps*
Depressive Disorder, Major/*genetics
Aged ; Computational Biology/methods ; Computational Biology/standards ; Female ; Humans ; Male ; Middle Aged ; Reproducibility of Results ; Reverse Transcriptase Polymerase Chain Reaction
Czasopismo naukowe
Tytuł :
Identification of aberrantly methylated‑differentially expressed genes and gene ontology in prostate cancer.
Autorzy :
Wang L; Department of Orthopedic Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing 400016, P.R. China.
Wang B; Laboratory of Environmental Monitoring, Shaanxi Province Health Inspection Institution, Xi'an, Shaanxi 710077, P.R. China.
Quan Z; Department of Orthopedic Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing 400016, P.R. China.
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Źródło :
Molecular medicine reports [Mol Med Rep] 2020 Feb; Vol. 21 (2), pp. 744-758. Date of Electronic Publication: 2019 Dec 11.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Expression Profiling*
Gene Expression Regulation, Neoplastic*
Gene Ontology*
DNA Methylation/*genetics
Prostatic Neoplasms/*genetics
Gene Regulatory Networks ; Humans ; Kaplan-Meier Estimate ; Male ; Protein Interaction Mapping ; Reproducibility of Results
Czasopismo naukowe
Tytuł :
Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents.
Autorzy :
Amith, Muhammad (AUTHOR)
Lin, Rebecca Z. (AUTHOR)
Cui, Licong (AUTHOR)
Wang, Dennis (AUTHOR)
Zhu, Anna (AUTHOR)
Xiong, Grace (AUTHOR)
Xu, Hua (AUTHOR)
Roberts, Kirk (AUTHOR)
Tao, Cui (AUTHOR)
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Źródło :
BMC Medical Informatics & Decision Making. 12/14/2020, Vol. 20 Issue 1, p1-17. 17p.
Czasopismo naukowe

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