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    Wyświetlanie 1-12 z 12
    Tytuł:
    Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities.
    Autorzy:
    Chiara M; molecular biology and bioinformatics at the University of Milan.
    D'Erchia AM; molecular biology at the University of Bari and research associate at the Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies of the National Research Council in Bari.
    Gissi C; molecular biology at the University of Bari and research associate at the Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies of the National Research Council in Bari.
    Manzari C; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies of the National Research Council in Bari.
    Parisi A; Genetic and Molecular Epidemiology Laboratory at the Experimental Zooprophylactic Institute of Apulia and Basilicata.
    Resta N; Medical Genetics at the University of Bari. She heads the Laboratory Unit of Medical Genetics and the School of Specialization in Medical Genetics.
    Zambelli F; molecular biology and bioinformatics at the University of Milan.
    Picardi E; molecular biology and bioinformatics at the University of Bari and research associate at the Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies of the National Research Council in Bari.
    Pavesi G; Associate Professor of bioinformatics at the University of Milan (Italy).
    Horner DS; molecular biology and bioinformatics at the University of Milan.
    Pesole G; molecular biology at the University of Bari and Research Associate at the Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies of the National Research Council in Bari.
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    Źródło:
    Briefings in bioinformatics [Brief Bioinform] 2021 Mar 22; Vol. 22 (2), pp. 616-630.
    Typ publikacji:
    Editorial; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Genome, Viral*
    COVID-19/*virology
    High-Throughput Nucleotide Sequencing/*methods
    SARS-CoV-2/*genetics
    COVID-19/epidemiology ; Humans ; Pandemics
    Raport
    Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
    Tytuł:
    Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data.
    Autorzy:
    Chiara M; Department of Biosciences, University of Milan, via Celoria 26, 20133 Milan, Italy.; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy.
    Zambelli F; Department of Biosciences, University of Milan, via Celoria 26, 20133 Milan, Italy.; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy.
    Picardi E; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy.; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari 'A. Moro', Via Orabona 4, 70126 Bari, Italy.
    Horner DS; Department of Biosciences, University of Milan, via Celoria 26, 20133 Milan, Italy.; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy.
    Pesole G; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy.; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari 'A. Moro', Via Orabona 4, 70126 Bari, Italy.
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    Źródło:
    Briefings in bioinformatics [Brief Bioinform] 2020 Dec 01; Vol. 21 (6), pp. 1971-1986.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Computational Biology*
    High-Throughput Nucleotide Sequencing*/methods
    Microsatellite Repeats*
    Molecular Sequence Data*
    Sequence Analysis, DNA*/methods
    Alleles ; Chromosome Mapping ; Genome, Human ; Genomics/methods ; Humans ; Reproducibility of Results
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
    Tytuł:
    Laniakea: an open solution to provide Galaxy "on-demand" instances over heterogeneous cloud infrastructures.
    Autorzy:
    Tangaro MA; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (CNR), Via Giovanni Amendola 122/O, 70126 Bari, Italy.
    Donvito G; National Institute for Nuclear Physics (INFN), Section of Bari, Via Orabona 4, 70126 Bari, Italy.
    Antonacci M; National Institute for Nuclear Physics (INFN), Section of Bari, Via Orabona 4, 70126 Bari, Italy.
    Chiara M; Department of Biosciences, University of Milan, via Celoria 26, 20133 Milano, Italy.
    Mandreoli P; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (CNR), Via Giovanni Amendola 122/O, 70126 Bari, Italy.; Department of Biosciences, University of Milan, via Celoria 26, 20133 Milano, Italy.
    Pesole G; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (CNR), Via Giovanni Amendola 122/O, 70126 Bari, Italy.; Department of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari, Via Orabona 4, 70126 Bari, Italy.
    Zambelli F; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (CNR), Via Giovanni Amendola 122/O, 70126 Bari, Italy.; Department of Biosciences, University of Milan, via Celoria 26, 20133 Milano, Italy.
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    Źródło:
    GigaScience [Gigascience] 2020 Apr 01; Vol. 9 (4).
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Software*
    Workflow*
    Computational Biology/*trends
    Cloud Computing ; User-Computer Interface
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
    Tytuł:
    Elucidating the editome: bioinformatics approaches for RNA editing detection.
    Autorzy:
    Diroma MA; University of Bari, Italy.
    Ciaccia L; University of Bari, Italy.
    Pesole G
    Picardi E; University of Bari, Italy.
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    Źródło:
    Briefings in bioinformatics [Brief Bioinform] 2019 Mar 22; Vol. 20 (2), pp. 436-447.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't; Review
    MeSH Terms:
    Genome, Human*
    RNA Editing*
    Transcriptome*
    Computational Biology/*methods
    High-Throughput Nucleotide Sequencing/methods ; Humans ; Sequence Analysis, RNA/methods ; Software
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
    Tytuł:
    The metagenomic data life-cycle: standards and best practices.
    Autorzy:
    Ten Hoopen P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
    Finn RD; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
    Bongo LA; UiT The Arctic University of Norway, Tromsø N-9037, Norway.
    Corre E; CNRS-UPMC, FR 2424, Station Biologique, Roscoff 29680, France.
    Fosso B; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, CNR, Bari 70126, Italy.
    Meyer F; Argonne National Laboratory, Argonne IL 60439, USA.
    Mitchell A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
    Pelletier E; Genoscope, CEA, Évry 91000, France.; CNRS/UMR-8030, Évry 91000, France.; Université Évry val d'Essonne, Évry 91000, France.
    Pesole G; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, CNR, Bari 70126, Italy.; Department of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari 'A. Moro,' Bari 70126, Italy.
    Santamaria M; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, CNR, Bari 70126, Italy.
    Willassen NP; UiT The Arctic University of Norway, Tromsø N-9037, Norway.
    Cochrane G; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
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    Źródło:
    GigaScience [Gigascience] 2017 Aug 01; Vol. 6 (8), pp. 1-11.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Computational Biology/*methods
    Computational Biology/*standards
    Metagenomics/*methods
    Metagenomics/*standards
    Data Mining/methods ; Data Mining/standards ; Databases, Genetic ; Metagenome ; Sequence Analysis/methods ; Sequence Analysis/standards ; Workflow
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.
    Autorzy:
    Zambelli F; University of Milan.
    Pesole G
    Pavesi G
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    Źródło:
    Briefings in bioinformatics [Brief Bioinform] 2013 Mar; Vol. 14 (2), pp. 225-37. Date of Electronic Publication: 2012 Apr 19.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Regulatory Elements, Transcriptional*
    High-Throughput Nucleotide Sequencing/*statistics & numerical data
    Transcription Factors/*metabolism
    Algorithms ; Animals ; Binding Sites/genetics ; Chromatin Immunoprecipitation/statistics & numerical data ; Computational Biology ; Consensus Sequence ; DNA/genetics ; DNA/metabolism ; Gene Expression Profiling/statistics & numerical data ; Humans
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Reference databases for taxonomic assignment in metagenomics.
    Autorzy:
    Santamaria M; Institute of Biomembranes and Bioenergetics, National Research Council, Bari, Italy.
    Fosso B
    Consiglio A
    De Caro G
    Grillo G
    Licciulli F
    Liuni S
    Marzano M
    Alonso-Alemany D
    Valiente G
    Pesole G
    Pokaż więcej
    Źródło:
    Briefings in bioinformatics [Brief Bioinform] 2012 Nov; Vol. 13 (6), pp. 682-95. Date of Electronic Publication: 2012 Jul 10.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't; Review
    MeSH Terms:
    Databases, Genetic*
    Metagenomics/*methods
    Algorithms ; Fungi/classification ; Fungi/genetics ; Genes, rRNA ; RNA, Ribosomal, 16S/genetics ; RNA, Ribosomal, 16S/metabolism
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.
    Autorzy:
    Horner DS; University of Milan (Italy).
    Pavesi G
    Castrignanò T
    De Meo PD
    Liuni S
    Sammeth M
    Picardi E
    Pesole G
    Pokaż więcej
    Źródło:
    Briefings in bioinformatics [Brief Bioinform] 2010 Mar; Vol. 11 (2), pp. 181-97. Date of Electronic Publication: 2009 Oct 27.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't; Review
    MeSH Terms:
    Base Sequence*
    Computational Biology/*methods
    Genomics/*methods
    Sequence Analysis, DNA/*methods
    Chromosome Mapping/methods ; Gene Expression Profiling ; Humans ; Molecular Sequence Data ; Oligonucleotide Array Sequence Analysis ; Polymorphism, Single Nucleotide ; RNA/genetics ; RNA/metabolism
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Correlated substitution analysis and the prediction of amino acid structural contacts.
    Autorzy:
    Horner DS; Department of Biomolecular Sciences and Biotechnology, University of Milan, via Celoria 26, 20133 Milano, Italy. />Pirovano W
    Pesole G
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    Źródło:
    Briefings in bioinformatics [Brief Bioinform] 2008 Jan; Vol. 9 (1), pp. 46-56. Date of Electronic Publication: 2007 Nov 13.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't; Review
    MeSH Terms:
    Models, Chemical*
    Models, Molecular*
    Amino Acids/*chemistry
    Proteins/*chemistry
    Sequence Analysis, Protein/*methods
    Amino Acid Sequence ; Amino Acid Substitution ; Binding Sites ; Computer Simulation ; Molecular Sequence Data ; Protein Binding
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Computational methods for alternative splicing prediction.
    Autorzy:
    Bonizzoni P; Dipartimento di Biochimica e Biologia Molecolare, Universita di Bari, Via Orabona 4, 70126 Bari, Italy. graziano.pesole@biologia.uniba.it.
    Rizzi R
    Pesole G
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    Źródło:
    Briefings in functional genomics & proteomics [Brief Funct Genomic Proteomic] 2006 Mar; Vol. 5 (1), pp. 46-51. Date of Electronic Publication: 2006 Feb 20.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't; Review
    MeSH Terms:
    Algorithms*
    Alternative Splicing*
    Animals ; Expressed Sequence Tags ; Genome ; Genome, Human ; Humans ; Predictive Value of Tests ; Sequence Alignment ; Sequence Analysis, RNA ; Software
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    In silico representation and discovery of transcription factor binding sites.
    Autorzy:
    Pavesi G; University of Milan, Milano, Italy.
    Mauri G
    Pesole G
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    Źródło:
    Briefings in bioinformatics [Brief Bioinform] 2004 Sep; Vol. 5 (3), pp. 217-36.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't; Review
    MeSH Terms:
    Algorithms*
    Proteins/*chemistry
    Proteins/*genetics
    Sequence Alignment/*methods
    Sequence Analysis/*methods
    Transcription Factors/*chemistry
    Transcription Factors/*genetics
    Amino Acid Motifs/genetics ; Binding Sites ; Chromosome Mapping/methods ; Genes, Regulator/genetics ; Oligonucleotide Array Sequence Analysis/methods ; Protein Binding ; Software
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
      Wyświetlanie 1-12 z 12

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