The role of cryptic ancestral symmetry in histone folding mechanisms across Eukarya and Archaea.
Autorzy:
Zhao H; Biophysics Program, Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America.; Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America. Wu H; Biophysics Program, Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America. Guseman A; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America. Abeykoon D; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America. Camara CM; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America. Dalal Y; Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America. Fushman D; Biophysics Program, Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America.; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America. PapoianGA; Biophysics Program, Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America.; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2024 Jan 05; Vol. 20 (1), pp. e1011721. Date of Electronic Publication: 2024 Jan 05 (Print Publication: 2024).
Myosin and [Formula: see text]-actinin regulation of stress fiber contractility under tensile stress.
Autorzy:
Ni H; Institute for Physical Science and Technology, University of Maryland, College Park, MD, USA. Ni Q; Institute for NanoBioTechnology, Johns Hopkins University, Baltimore, MD, USA. PapoianGA; Institute for Physical Science and Technology, University of Maryland, College Park, MD, USA.; Department of Chemistry and Biochemistry, University of Maryland, College Park, MD, USA. Trache A; Department of Medical Physiology, Texas A &M University Health Science Center, Bryan, TX, USA.; Department of Biomedical Engineering, Texas A &M University, College Station, TX, USA. Jiang Y; Department of Mathematics and Statistics, Georgia State University, Atlanta, GA, USA.
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Źródło:
Scientific reports [Sci Rep] 2023 May 29; Vol. 13 (1), pp. 8662. Date of Electronic Publication: 2023 May 29.
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Simulated actin reorganization mediated by motor proteins.
Autorzy:
Ciocanel MV; Department of Mathematics and Biology, Duke University, Durham, North Carolina, United States of America. Chandrasekaran A; Department of Mechanical and Aerospace Engineering, University of California San Diego, La Jolla, California, United States of America. Mager C; Department of Biochemistry, The Ohio State University, Columbus, Ohio, United States of America. Ni Q; Department of Chemical and Biomolecular Engineering, University of Maryland, College Park, Maryland, United States of America. PapoianGA; Department of Chemistry and Biochemistry and Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America. Dawes A; Department of Mathematics and Department of Molecular Genetics, The Ohio State University, Columbus, Ohio, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2022 Apr 07; Vol. 18 (4), pp. e1010026. Date of Electronic Publication: 2022 Apr 07 (Print Publication: 2022).
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
Tensile force-induced cytoskeletal remodeling: Mechanics before chemistry.
Autorzy:
Li X; Department of Mathematics and Statistics, Georgia State University, Atlanta, Georgia, United States of America. Ni Q; Department of Chemical & Biomolecular Engineering, University of Maryland, College Park, Maryland, United States of America. He X; Department of Mathematics and Statistics, Georgia State University, Atlanta, Georgia, United States of America. Kong J; Department of Mathematics and Statistics, Georgia State University, Atlanta, Georgia, United States of America. Lim SM; Department of Medical Physiology, Texas A&M University Health Science Center, Bryan, Texas, United States of America. PapoianGA; Department of Chemistry & Biochemistry, University of Maryland, College Park, Maryland, United States of America. Trzeciakowski JP; Department of Medical Physiology, Texas A&M University Health Science Center, Bryan, Texas, United States of America. Trache A; Department of Medical Physiology, Texas A&M University Health Science Center, Bryan, Texas, United States of America.; Department of Biomedical Engineering, Texas A&M University, College Station, Texas, United States of America. Jiang Y; Department of Mathematics and Statistics, Georgia State University, Atlanta, Georgia, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2020 Jun 10; Vol. 16 (6), pp. e1007693. Date of Electronic Publication: 2020 Jun 10 (Print Publication: 2020).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Remarkable structural transformations of actin bundles are driven by their initial polarity, motor activity, crosslinking, and filament treadmilling.
Autorzy:
Chandrasekaran A; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America.; Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America. Upadhyaya A; Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America.; Department of Physics, University of Maryland, College Park, United States of America. PapoianGA; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America.; Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2019 Jul 09; Vol. 15 (7), pp. e1007156. Date of Electronic Publication: 2019 Jul 09 (Print Publication: 2019).
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
Internal modifications in the CENP-A nucleosome modulate centromeric dynamics.
Autorzy:
Bui M; Chromatin Structure and Epigenetic Mechanisms Unit, Laboratory of Receptor Biology and Gene Expression, CCR, NCI, NIH, Bethesda, MD 20892 USA. Pitman M; Chromatin Structure and Epigenetic Mechanisms Unit, Laboratory of Receptor Biology and Gene Expression, CCR, NCI, NIH, Bethesda, MD 20892 USA.; Department of Biophysics, University of Maryland, College Park, MD USA. Nuccio A; Cellular Networks Proteomics Unit, Laboratory of Systems Biology, NIAID, NIH, Bethesda, MD 20892 USA. Roque S; Chromatin Structure and Epigenetic Mechanisms Unit, Laboratory of Receptor Biology and Gene Expression, CCR, NCI, NIH, Bethesda, MD 20892 USA. Donlin-Asp PG; Chromatin Structure and Epigenetic Mechanisms Unit, Laboratory of Receptor Biology and Gene Expression, CCR, NCI, NIH, Bethesda, MD 20892 USA.; Department of Cell Biology, Emory University, Atlanta, GA USA. Nita-Lazar A; Cellular Networks Proteomics Unit, Laboratory of Systems Biology, NIAID, NIH, Bethesda, MD 20892 USA. PapoianGA; Department of Biophysics, University of Maryland, College Park, MD USA. Dalal Y; Chromatin Structure and Epigenetic Mechanisms Unit, Laboratory of Receptor Biology and Gene Expression, CCR, NCI, NIH, Bethesda, MD 20892 USA.
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Źródło:
Epigenetics & chromatin [Epigenetics Chromatin] 2017 Apr 04; Vol. 10, pp. 17. Date of Electronic Publication: 2017 Apr 04 (Print Publication: 2017).
Typ publikacji:
Journal Article; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin Networks.
Autorzy:
Popov K; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America.; Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America. Komianos J; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America.; Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America.; Biophysics Graduate Program, University of Maryland, College Park, Maryland, United States of America. PapoianGA; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America.; Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2016 Apr 27; Vol. 12 (4), pp. e1004877. Date of Electronic Publication: 2016 Apr 27 (Print Publication: 2016).
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
Shearing of the CENP-A dimerization interface mediates plasticity in the octameric centromeric nucleosome.
Autorzy:
Winogradoff D; Chemical Physics Program, University of Maryland, College Park, MD 20742, USA. Zhao H; Biophysics Program, University of Maryland, College Park, MD 20742, USA.; Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA. Dalal Y; Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA. PapoianGA; Chemical Physics Program, University of Maryland, College Park, MD 20742, USA.; Biophysics Program, University of Maryland, College Park, MD 20742, USA.; Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20742, USA.
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Źródło:
Scientific reports [Sci Rep] 2015 Nov 25; Vol. 5, pp. 17038. Date of Electronic Publication: 2015 Nov 25.
Typ publikacji:
Journal Article; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
DNA exit ramps are revealed in the binding landscapes obtained from simulations in helical coordinates.
Autorzy:
Echeverria I; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America; Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America. PapoianGA; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America; Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2015 Feb 12; Vol. 11 (2), pp. e1003980. Date of Electronic Publication: 2015 Feb 12 (Print Publication: 2015).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
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