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Wyszukujesz frazę ""Protein Interaction Mapping"" wg kryterium: Temat


Tytuł :
The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions.
Autorzy :
Oughtred R; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, USA.
Rust J; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, USA.
Chang C; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, USA.
Breitkreutz BJ; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada.
Stark C; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada.
Willems A; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada.
Boucher L; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada.
Leung G; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada.
Kolas N; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada.
Zhang F; Arthur and Sonia Labatt Brain Tumor Research Center and Developmental and Stem Cell Biology, The Hospital for Sick Children, Toronto, Ontario, Canada.
Dolma S; Arthur and Sonia Labatt Brain Tumor Research Center and Developmental and Stem Cell Biology, The Hospital for Sick Children, Toronto, Ontario, Canada.
Coulombe-Huntington J; Institute for Research in Immunology and Cancer, Université de Montréal, Quebec, Canada.
Chatr-Aryamontri A; Institute for Research in Immunology and Cancer, Université de Montréal, Quebec, Canada.
Dolinski K; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, USA.
Tyers M; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada.; Institute for Research in Immunology and Cancer, Université de Montréal, Quebec, Canada.
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Źródło :
Protein science : a publication of the Protein Society [Protein Sci] 2021 Jan; Vol. 30 (1), pp. 187-200. Date of Electronic Publication: 2020 Nov 23.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Factual*
Protein Interaction Mapping*
COVID-19/*genetics
Proteins/*genetics
Animals ; COVID-19/virology ; Humans ; Mice ; SARS-CoV-2/genetics ; SARS-CoV-2/pathogenicity ; User-Computer Interface
Czasopismo naukowe
Tytuł :
Prediction of membrane protein types by fusing protein-protein interaction and protein sequence information.
Autorzy :
Zhang X; College of Information Engineering, Shanghai Maritime University, Shanghai 201306, People's Republic of China.
Chen L; College of Information Engineering, Shanghai Maritime University, Shanghai 201306, People's Republic of China. Electronic address: .
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Źródło :
Biochimica et biophysica acta. Proteins and proteomics [Biochim Biophys Acta Proteins Proteom] 2020 Dec; Vol. 1868 (12), pp. 140524. Date of Electronic Publication: 2020 Aug 25.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Amino Acid Sequence*
Computational Biology*/methods
Protein Interaction Mapping*
Protein Interaction Maps*
Membrane Proteins/*chemistry
Membrane Proteins/*metabolism
Algorithms ; Amino Acids ; Databases, Protein ; Humans ; Protein Binding ; Reproducibility of Results ; Support Vector Machine
Czasopismo naukowe
Tytuł :
Mapping the native interaction surfaces of PREP1 with PBX1 by cross-linking mass-spectrometry and mutagenesis.
Autorzy :
Bruckmann C; IFOM (Foundation FIRC Institute of Molecular Oncology), Via Adamello 16, 20139, Milan, Italy. .
Tamburri S; IFOM (Foundation FIRC Institute of Molecular Oncology), Via Adamello 16, 20139, Milan, Italy.; Department of Experimental Oncology, European Institute of Oncology, Via Adamello 16, 20139, Milan, Italy.
De Lorenzi V; IFOM (Foundation FIRC Institute of Molecular Oncology), Via Adamello 16, 20139, Milan, Italy.; Center for Nanotechnology , Istituto Italiano di Tecnologia, Piazza San Silvestro 12, 56124, Pisa, Italy.
Doti N; Institute of Biostructures and Bioimaging (IBB)-CNR, Via Mezzocannone 16, 80134, Naples, Italy.
Monti A; Institute of Biostructures and Bioimaging (IBB)-CNR, Via Mezzocannone 16, 80134, Naples, Italy.
Mathiasen L; IFOM (Foundation FIRC Institute of Molecular Oncology), Via Adamello 16, 20139, Milan, Italy.
Cattaneo A; IFOM (Foundation FIRC Institute of Molecular Oncology), Via Adamello 16, 20139, Milan, Italy.; Cogentech S.R.L. Benefit Corporation IT, Via Adamello 16, 20139, Milan, Italy.
Ruvo M; Institute of Biostructures and Bioimaging (IBB)-CNR, Via Mezzocannone 16, 80134, Naples, Italy.
Bachi A; IFOM (Foundation FIRC Institute of Molecular Oncology), Via Adamello 16, 20139, Milan, Italy.
Blasi F; IFOM (Foundation FIRC Institute of Molecular Oncology), Via Adamello 16, 20139, Milan, Italy. .
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 08; Vol. 10 (1), pp. 16809. Date of Electronic Publication: 2020 Oct 08.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Protein Interaction Mapping*/methods
Homeodomain Proteins/*metabolism
Pre-B-Cell Leukemia Transcription Factor 1/*metabolism
A549 Cells ; Binding Sites ; Cloning, Molecular ; Enzyme-Linked Immunosorbent Assay ; Humans ; Mass Spectrometry ; Mutagenesis ; Myeloid Ecotropic Viral Integration Site 1 Protein/metabolism
Czasopismo naukowe
Tytuł :
Using collections of structural models to predict changes of binding affinity caused by mutations in protein-protein interactions.
Autorzy :
Meseguer A; Structural Bioinformatics Group, Research Programme on Biomedical Informatics, Department of Experimental and Health Science, Universitat Pompeu Fabra, Barcelona, Catalonia, Spain.
Dominguez L; Integrative Biomedical Informatics Group (GRIB-IMIM). Department of Experimental and Life Sciences, Universitat Pompeu Fabra, Barcelona, Catalonia, Spain.
Bota PM; Structural Bioinformatics Group, Research Programme on Biomedical Informatics, Department of Experimental and Health Science, Universitat Pompeu Fabra, Barcelona, Catalonia, Spain.; Department of Biosciences, Universitat de Vic-Universitat Central de Catalunya, Vic, Catalonia, Spain.
Aguirre-Plans J; Structural Bioinformatics Group, Research Programme on Biomedical Informatics, Department of Experimental and Health Science, Universitat Pompeu Fabra, Barcelona, Catalonia, Spain.
Bonet J; Structural Bioinformatics Group, Research Programme on Biomedical Informatics, Department of Experimental and Health Science, Universitat Pompeu Fabra, Barcelona, Catalonia, Spain.
Fernandez-Fuentes N; Department of Biosciences, Universitat de Vic-Universitat Central de Catalunya, Vic, Catalonia, Spain.; Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, UK.
Oliva B; Structural Bioinformatics Group, Research Programme on Biomedical Informatics, Department of Experimental and Health Science, Universitat Pompeu Fabra, Barcelona, Catalonia, Spain.
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Źródło :
Protein science : a publication of the Protein Society [Protein Sci] 2020 Oct; Vol. 29 (10), pp. 2112-2130. Date of Electronic Publication: 2020 Sep 05.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Protein*
Models, Chemical*
Models, Structural*
Protein Interaction Mapping*
Proteins*
Software*
Computational Biology ; Mutation ; Protein Binding
Czasopismo naukowe
Tytuł :
FLIM-FRET Measurements of Protein-Protein Interactions in Live Bacteria.
Autorzy :
Manko H; Université de Strasbourg, Laboratoire de Bioimagerie et Pathologies, UMR CNRS 7021.
Normant V; Université de Strasbourg, UMR 7242, ESBS; CNRS, UMR 7242, ESBS.
Perraud Q; Université de Strasbourg, UMR 7242, ESBS; CNRS, UMR 7242, ESBS.
Steffan T; Université de Strasbourg, Laboratoire de Bioimagerie et Pathologies, UMR CNRS 7021.
Gasser V; Université de Strasbourg, UMR 7242, ESBS; CNRS, UMR 7242, ESBS.
Boutant E; Université de Strasbourg, Laboratoire de Bioimagerie et Pathologies, UMR CNRS 7021.
Réal É; Université de Strasbourg, Laboratoire de Bioimagerie et Pathologies, UMR CNRS 7021.
Schalk IJ; Université de Strasbourg, UMR 7242, ESBS; CNRS, UMR 7242, ESBS.
Mély Y; Université de Strasbourg, Laboratoire de Bioimagerie et Pathologies, UMR CNRS 7021.
Godet J; Université de Strasbourg, Laboratoire de Bioimagerie et Pathologies, UMR CNRS 7021; Groupe Méthode Recherche Clinique, Hôpitaux Universitaires de Strasbourg; .
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Źródło :
Journal of visualized experiments : JoVE [J Vis Exp] 2020 Aug 25 (162). Date of Electronic Publication: 2020 Aug 25.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Video-Audio Media
MeSH Terms :
Protein Interaction Mapping*
Fluorescence Resonance Energy Transfer/*methods
Microscopy, Fluorescence/*methods
Pseudomonas aeruginosa/*metabolism
Algorithms ; Binding Sites ; Chromosomes, Bacterial/genetics ; Fluorescent Dyes/metabolism ; Genome, Bacterial ; Photons ; Plasmids/metabolism ; Pseudomonas aeruginosa/genetics ; Software
Czasopismo naukowe
Tytuł :
Alternative proteins are functional regulators in cell reprogramming by PKA activation.
Autorzy :
Cardon T; Univ. Lille, Inserm, CHU Lille, U1192-Protéomique Réponse Inflammatoire Spectrométrie de Masse (PRISM), F-59000 Lille, France.
Franck J; Univ. Lille, Inserm, CHU Lille, U1192-Protéomique Réponse Inflammatoire Spectrométrie de Masse (PRISM), F-59000 Lille, France.
Coyaud E; Univ. Lille, Inserm, CHU Lille, U1192-Protéomique Réponse Inflammatoire Spectrométrie de Masse (PRISM), F-59000 Lille, France.
Laurent EMN; Univ. Lille, Inserm, CHU Lille, U1192-Protéomique Réponse Inflammatoire Spectrométrie de Masse (PRISM), F-59000 Lille, France.
Damato M; Univ. Lille, Inserm, CHU Lille, U1192-Protéomique Réponse Inflammatoire Spectrométrie de Masse (PRISM), F-59000 Lille, France.; Department of Biological and Environmental Sciences and Technologies, University of Salento, 73100 Lecce, Italy.
Maffia M; Department of Biological and Environmental Sciences and Technologies, University of Salento, 73100 Lecce, Italy.
Vergara D; Department of Biological and Environmental Sciences and Technologies, University of Salento, 73100 Lecce, Italy.
Fournier I; Univ. Lille, Inserm, CHU Lille, U1192-Protéomique Réponse Inflammatoire Spectrométrie de Masse (PRISM), F-59000 Lille, France.; Institut Universitaire de France (IUF),75005 Paris, France.
Salzet M; Univ. Lille, Inserm, CHU Lille, U1192-Protéomique Réponse Inflammatoire Spectrométrie de Masse (PRISM), F-59000 Lille, France.; Institut Universitaire de France (IUF),75005 Paris, France.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Aug 20; Vol. 48 (14), pp. 7864-7882.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Cellular Reprogramming*/drug effects
Protein Interaction Mapping*
Cyclic AMP-Dependent Protein Kinases/*metabolism
Cell Line, Tumor ; Colforsin/pharmacology ; Enzyme Activation ; Humans ; Mass Spectrometry ; Microtubule-Associated Proteins/metabolism ; Nuclear Proteins/metabolism ; Proteomics ; RNA-Binding Proteins/metabolism ; Receptor, EphA5/metabolism ; Signal Transduction ; Tropomyosin/metabolism
Czasopismo naukowe
Tytuł :
Fractional diffusion on the human proteome as an alternative to the multi-organ damage of SARS-CoV-2.
Autorzy :
Estrada E; Instituto Universitario de Matemáticas y Aplicaciones, Universidad de Zaragoza, 50009 Zaragoza, Spain and ARAID Foundation, Government of Aragón, 50018 Zaragoza, Spain.
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Źródło :
Chaos (Woodbury, N.Y.) [Chaos] 2020 Aug; Vol. 30 (8), pp. 081104.
Typ publikacji :
Journal Article
MeSH Terms :
Betacoronavirus*
Models, Biological*
Protein Interaction Mapping*
Protein Interaction Maps*
Proteome*
Coronavirus Infections/*physiopathology
Pneumonia, Viral/*physiopathology
Biomarkers/metabolism ; COVID-19 ; Coronavirus Infections/metabolism ; Diffusion ; Humans ; Pandemics ; Pneumonia, Viral/metabolism ; SARS-CoV-2 ; Time Factors
Czasopismo naukowe
Tytuł :
Topological and system-level protein interaction network (PIN) analyses to deduce molecular mechanism of curcumin.
Autorzy :
Dhasmana A; Department of Immunology and Microbiology, School of Medicine, University of Texas Rio Grande Valley, Edinburg, TX, USA.; Department of Biosciences and Cancer Research Institute, Himalayan Institute of Medical Sciences, Swami Rama Himalayan University, Dehradun, India.
Uniyal S; School of Biotechnology, Gautam Buddha University, Greater Noida, India.
Anukriti; Department of Biosciences and Cancer Research Institute, Himalayan Institute of Medical Sciences, Swami Rama Himalayan University, Dehradun, India.
Kashyap VK; Department of Immunology and Microbiology, School of Medicine, University of Texas Rio Grande Valley, Edinburg, TX, USA.
Somvanshi P; Department of Biotechnology, TERI School of Advanced Studies, 10, Institutional Area, Vasant Kunj,, New Delhi, India.
Gupta M; Department of Biosciences and Cancer Research Institute, Himalayan Institute of Medical Sciences, Swami Rama Himalayan University, Dehradun, India.
Bhardwaj U; Department of Biosciences and Cancer Research Institute, Himalayan Institute of Medical Sciences, Swami Rama Himalayan University, Dehradun, India.
Jaggi M; Department of Immunology and Microbiology, School of Medicine, University of Texas Rio Grande Valley, Edinburg, TX, USA.
Yallapu MM; Department of Immunology and Microbiology, School of Medicine, University of Texas Rio Grande Valley, Edinburg, TX, USA.
Haque S; Research and Scientific Studies Unit, College of Nursing and Allied Health Sciences, Jazan University, Jazan, Saudi Arabia.
Chauhan SC; Department of Immunology and Microbiology, School of Medicine, University of Texas Rio Grande Valley, Edinburg, TX, USA. .
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Źródło :
Scientific reports [Sci Rep] 2020 Jul 21; Vol. 10 (1), pp. 12045. Date of Electronic Publication: 2020 Jul 21.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Protein Interaction Mapping*/methods
Protein Interaction Maps*
Curcumin/*chemistry
Curcumin/*pharmacology
Computational Biology/methods ; Dose-Response Relationship, Drug ; Kinetics ; Molecular Docking Simulation ; Molecular Dynamics Simulation ; Molecular Sequence Annotation ; Protein Binding/drug effects ; Signal Transduction/drug effects
Czasopismo naukowe
Tytuł :
An integrated transcriptomics and network pharmacology approach to exploring the mechanism of adriamycin-induced kidney injury.
Autorzy :
He S; Modern Research Center for Traditional Chinese Medicine of Shanxi University, No. 92, Wucheng Road, Taiyuan, 030006, Shanxi, People's Republic of China; College of Chemistry and Chemical Engineering of Shanxi University, Taiyuan, 030006, China.
Li A; Modern Research Center for Traditional Chinese Medicine of Shanxi University, No. 92, Wucheng Road, Taiyuan, 030006, Shanxi, People's Republic of China. Electronic address: .
Zhang W; Modern Research Center for Traditional Chinese Medicine of Shanxi University, No. 92, Wucheng Road, Taiyuan, 030006, Shanxi, People's Republic of China.
Zhang L; Institute of Biotechnology, Key Laboratory of Chemical Biology and Molecular Engineering of National Ministry of Education, Shanxi University, Taiyuan, 030006, China.
Liu Y; Modern Research Center for Traditional Chinese Medicine of Shanxi University, No. 92, Wucheng Road, Taiyuan, 030006, Shanxi, People's Republic of China.
Li K; Modern Research Center for Traditional Chinese Medicine of Shanxi University, No. 92, Wucheng Road, Taiyuan, 030006, Shanxi, People's Republic of China.
Qin X; Modern Research Center for Traditional Chinese Medicine of Shanxi University, No. 92, Wucheng Road, Taiyuan, 030006, Shanxi, People's Republic of China; College of Chemistry and Chemical Engineering of Shanxi University, Taiyuan, 030006, China. Electronic address: .
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Źródło :
Chemico-biological interactions [Chem Biol Interact] 2020 Jul 01; Vol. 325, pp. 109096. Date of Electronic Publication: 2020 Apr 11.
Typ publikacji :
Journal Article
MeSH Terms :
Protein Interaction Mapping*
Doxorubicin/*pharmacology
Kidney/*drug effects
Kidney/*injuries
Transcriptome/*drug effects
Animals ; Body Weight/drug effects ; Kidney/metabolism ; Male ; Rats ; Rats, Sprague-Dawley
Czasopismo naukowe
Tytuł :
COVID-2019-associated overexpressed Prevotella proteins mediated host-pathogen interactions and their role in coronavirus outbreak.
Autorzy :
Khan AA; Division of Microbiology, Indian Council of Medical Research-National AIDS Research Institute, Pune, Maharashtra 411026, India.
Khan Z; Department of Pathology and Laboratory Medicine.; Department of Biomedical Sciences, Cedars-Sinai Medical Centre, Los Angeles, CA 90048, USA.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2020 Jul 01; Vol. 36 (13), pp. 4065-4069.
Typ publikacji :
Journal Article
MeSH Terms :
Host-Pathogen Interactions*
Prevotella*
Protein Interaction Mapping*
Bacterial Proteins/*immunology
Coronavirus Infections/*complications
Pneumonia, Viral/*complications
Bacteroidaceae Infections/complications ; Betacoronavirus ; COVID-19 ; China ; Humans ; NF-kappa B ; Pandemics ; SARS-CoV-2
Czasopismo naukowe
Tytuł :
Asymmetry between Activators and Deactivators in Functional Protein Networks.
Autorzy :
Tareen A; Department of Physics, Clark University, Worcester, Massachusetts, 01610, USA.; Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA.
Wingreen NS; Lewis-Sigler Institute for Integrative Genomics, Carl Icahn Laboratory, Washington Road, Princeton, New Jersey, 08544, USA. .; Department of Molecular Biology, Princeton University, Princeton, NJ, 08544, USA. .
Mukhopadhyay R; Department of Physics, Clark University, Worcester, Massachusetts, 01610, USA. .
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Źródło :
Scientific reports [Sci Rep] 2020 Jun 23; Vol. 10 (1), pp. 10131. Date of Electronic Publication: 2020 Jun 23.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Protein Interaction Mapping*
Protein Interaction Maps*
Proteins/*genetics
Proteins/*metabolism
Algorithms ; Animals ; Evolution, Molecular ; Humans ; Mutation ; Phosphorylation ; Protein Processing, Post-Translational
Czasopismo naukowe
Tytuł :
Identifying essential proteins in dynamic protein networks based on an improved h-index algorithm.
Autorzy :
Dai C; College of Artificial Intelligence and Information Technology, Nanjing University of Chinese Medicine University, Nanjing, 210000, China. .
He J; College of Artificial Intelligence and Information Technology, Nanjing University of Chinese Medicine University, Nanjing, 210000, China.
Hu K; College of Artificial Intelligence and Information Technology, Nanjing University of Chinese Medicine University, Nanjing, 210000, China.
Ding Y; College of Artificial Intelligence and Information Technology, Nanjing University of Chinese Medicine University, Nanjing, 210000, China.
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Źródło :
BMC medical informatics and decision making [BMC Med Inform Decis Mak] 2020 Jun 17; Vol. 20 (1), pp. 110. Date of Electronic Publication: 2020 Jun 17.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Algorithms*
Protein Interaction Mapping*
Protein Interaction Maps*
Computational Biology ; Humans ; Proteins/chemistry
Czasopismo naukowe
Tytuł :
COVID-19: viral-host interactome analyzed by network based-approach model to study pathogenesis of SARS-CoV-2 infection.
Autorzy :
Messina F; National Institute for Infectious Diseases 'Lazzaro Spallanzani' IRCCS, Rome, Italy.
Giombini E; National Institute for Infectious Diseases 'Lazzaro Spallanzani' IRCCS, Rome, Italy.
Agrati C; National Institute for Infectious Diseases 'Lazzaro Spallanzani' IRCCS, Rome, Italy.
Vairo F; National Institute for Infectious Diseases 'Lazzaro Spallanzani' IRCCS, Rome, Italy.
Ascoli Bartoli T; National Institute for Infectious Diseases 'Lazzaro Spallanzani' IRCCS, Rome, Italy.
Al Moghazi S; National Institute for Infectious Diseases 'Lazzaro Spallanzani' IRCCS, Rome, Italy.
Piacentini M; National Institute for Infectious Diseases 'Lazzaro Spallanzani' IRCCS, Rome, Italy.; Department of Biology, University of Rome 'Tor Vergata', Rome, Italy.
Locatelli F; Department of Pediatric Hematology and Oncology, IRCCS Ospedale Pediatrico Bambino Gesu, Rome, Italy.
Kobinger G; Département de Microbiologie-Infectiologie et d'Immunologie, Université Laval, Quebec, QC, Canada.
Maeurer M; ImmunoSurgery Unit, Champalimaud Centre for the Unknown, Lisbon, Portugal.; I. Medizinische Klinik Johannes Gutenberg-Universität, University of Mainz, Mainz, Germany.
Zumla A; Department of Infection, Division of Infection and Immunity, University College London, London, UK.; National Institute for Health Research Biomedical Research Centre, University College London Hospitals NHS Foundation Trust, London, UK.
Capobianchi MR; National Institute for Infectious Diseases 'Lazzaro Spallanzani' IRCCS, Rome, Italy. .
Lauria FN; National Institute for Infectious Diseases 'Lazzaro Spallanzani' IRCCS, Rome, Italy.
Ippolito G; National Institute for Infectious Diseases 'Lazzaro Spallanzani' IRCCS, Rome, Italy.
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Corporate Authors :
COVID 19 INMI Network Medicine for IDs Study Group
Źródło :
Journal of translational medicine [J Transl Med] 2020 Jun 10; Vol. 18 (1), pp. 233. Date of Electronic Publication: 2020 Jun 10.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Regulatory Networks*
Host-Pathogen Interactions*
Models, Biological*
Protein Interaction Mapping*
Betacoronavirus/*physiology
Coronavirus Infections/*genetics
Coronavirus Infections/*virology
Pneumonia, Viral/*genetics
Pneumonia, Viral/*virology
COVID-19 ; Humans ; Membrane Glycoproteins/metabolism ; Pandemics ; SARS-CoV-2 ; Signal Transduction/genetics ; Viral Envelope Proteins
Czasopismo naukowe
Tytuł :
Split Intein-Mediated Protein Ligation for detecting protein-protein interactions and their inhibition.
Autorzy :
Yao Z; Donnelly Centre, University of Toronto, Toronto, ON, Canada.
Aboualizadeh F; Donnelly Centre, University of Toronto, Toronto, ON, Canada.
Kroll J; Division of Developmental Biology, Institute of Biodynamics and Biocomplexity, Faculty of Science, Utrecht University, Utrecht, Netherlands.
Akula I; Donnelly Centre, University of Toronto, Toronto, ON, Canada.
Snider J; Donnelly Centre, University of Toronto, Toronto, ON, Canada.
Lyakisheva A; Donnelly Centre, University of Toronto, Toronto, ON, Canada.
Tang P; Donnelly Centre, University of Toronto, Toronto, ON, Canada.
Kotlyar M; Krembil Research Institute, University Health Network, Toronto, ON, Canada.
Jurisica I; Krembil Research Institute, University Health Network, Toronto, ON, Canada.; Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada.; Department of Computer Science, University of Toronto, Toronto, ON, Canada.; Institute of Neuroimmunology, Slovak Academy of Sciences, Bratislava, Slovak Republic.
Boxem M; Division of Developmental Biology, Institute of Biodynamics and Biocomplexity, Faculty of Science, Utrecht University, Utrecht, Netherlands.
Stagljar I; Donnelly Centre, University of Toronto, Toronto, ON, Canada. .; Department of Biochemistry, University of Toronto, Toronto, ON, Canada. .; Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada. .; Mediterranean Institute for Life Sciences, Meštrovićevo Šetalište 45, HR-21000, Split, Croatia. .
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Źródło :
Nature communications [Nat Commun] 2020 May 15; Vol. 11 (1), pp. 2440. Date of Electronic Publication: 2020 May 15.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Protein Interaction Mapping*
Inteins/*genetics
Amino Acid Sequence ; Animals ; Caenorhabditis elegans/metabolism ; Drug Evaluation, Preclinical ; Enzyme-Linked Immunosorbent Assay ; HEK293 Cells ; HeLa Cells ; Humans ; Protein Binding ; Time Factors
Czasopismo naukowe
Tytuł :
HMI-PRED: A Web Server for Structural Prediction of Host-Microbe Interactions Based on Interface Mimicry.
Autorzy :
Guven-Maiorov E; Computational Structural Biology Section, Basic Science Program, Frederick National Laboratory for Cancer Research, Frederick, MD, 21702, USA. Electronic address: .
Hakouz A; Department of Computer Engineering, Koc University, Istanbul, 34450, Turkey. Electronic address: .
Valjevac S; Department of Computer Engineering, Koc University, Istanbul, 34450, Turkey. Electronic address: .
Keskin O; Department of Chemical and Biological Engineering, Koc University, Istanbul, 34450, Turkey. Electronic address: .
Tsai CJ; Computational Structural Biology Section, Basic Science Program, Frederick National Laboratory for Cancer Research, Frederick, MD, 21702, USA. Electronic address: .
Gursoy A; Department of Computer Engineering, Koc University, Istanbul, 34450, Turkey. Electronic address: .
Nussinov R; Computational Structural Biology Section, Basic Science Program, Frederick National Laboratory for Cancer Research, Frederick, MD, 21702, USA; Sackler Inst. of Molecular Medicine, Department of Human Genetics and Molecular Medicine, Sackler School of Medicine, Tel Aviv University, Tel Aviv, 69978, Israel. Electronic address: .
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Źródło :
Journal of molecular biology [J Mol Biol] 2020 May 15; Vol. 432 (11), pp. 3395-3403. Date of Electronic Publication: 2020 Feb 13.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural
MeSH Terms :
Protein Interaction Mapping*
Software*
Bacteria/*genetics
Host Microbial Interactions/*genetics
Bacteria/pathogenicity ; Humans ; Internet
Czasopismo naukowe
Tytuł :
The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma.
Autorzy :
James K; Department of Applied Sciences, Northumbria University, Newcastle Upon Tyne, UK. .; Department of Life Sciences, The Natural History Museum, Cromwell Road, London, UK. .
Olson PD; Department of Life Sciences, The Natural History Museum, Cromwell Road, London, UK.
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Źródło :
BMC genomics [BMC Genomics] 2020 May 07; Vol. 21 (1), pp. 346. Date of Electronic Publication: 2020 May 07.
Typ publikacji :
Journal Article
MeSH Terms :
Protein Interaction Mapping*
Hymenolepis/*genetics
Proteome/*genetics
Animals ; Databases, Genetic ; Eukaryota/classification ; Eukaryota/genetics ; Eukaryota/metabolism ; Gene Regulatory Networks ; Genome, Helminth/genetics ; Helminth Proteins/genetics ; Helminth Proteins/metabolism ; Hymenolepis/classification ; Hymenolepis/metabolism ; Probability
Czasopismo naukowe
Tytuł :
Measuring the affinity of protein-protein interactions on a single-molecule level by mass photometry.
Autorzy :
Wu D; Biophysics Core Facility, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Piszczek G; Biophysics Core Facility, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA. Electronic address: .
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Źródło :
Analytical biochemistry [Anal Biochem] 2020 Mar 01; Vol. 592, pp. 113575. Date of Electronic Publication: 2020 Jan 07.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural
MeSH Terms :
Protein Interaction Mapping*
Antibodies, Monoclonal, Murine-Derived/*metabolism
Photometry/*methods
Single Molecule Imaging/*methods
Thrombin/*metabolism
Animals ; Humans ; Nanotechnology/methods ; Protein Binding ; Recombinant Proteins/metabolism
Czasopismo naukowe
Tytuł :
Identification of HeLa cell proteins that interact with Chlamydia trachomatis glycogen synthase using yeast two‑hybrid assays.
Autorzy :
Sun Z; Institution of Pathogenic Biology, Hengyang Medical College, University of South China, Hengyang, Hunan 421001, P.R. China.
Sun Y; Institution of Pathogenic Biology, Hengyang Medical College, University of South China, Hengyang, Hunan 421001, P.R. China.
Li Y; Institution of Pathogenic Biology, Hengyang Medical College, University of South China, Hengyang, Hunan 421001, P.R. China.
Luan X; Institution of Pathogenic Biology, Hengyang Medical College, University of South China, Hengyang, Hunan 421001, P.R. China.
Chen H; Institution of Pathogenic Biology, Hengyang Medical College, University of South China, Hengyang, Hunan 421001, P.R. China.
Wu H; Institution of Pathogenic Biology, Hengyang Medical College, University of South China, Hengyang, Hunan 421001, P.R. China.
Peng B; Department of Pathology, Hengyang Medical College, University of South China, Hengyang, Hunan 421001, P.R. China.
Lu C; Institution of Pathogenic Biology, Hengyang Medical College, University of South China, Hengyang, Hunan 421001, P.R. China.
Pokaż więcej
Źródło :
Molecular medicine reports [Mol Med Rep] 2020 Mar; Vol. 21 (3), pp. 1572-1580. Date of Electronic Publication: 2020 Jan 16.
Typ publikacji :
Journal Article
MeSH Terms :
Protein Interaction Mapping*/methods
Two-Hybrid System Techniques*
Bacterial Proteins/*metabolism
Carrier Proteins/*metabolism
Chlamydia trachomatis/*enzymology
Glycogen Synthase/*metabolism
Bacterial Proteins/genetics ; Chlamydia Infections/metabolism ; Chlamydia Infections/microbiology ; Glycogen Synthase/genetics ; HeLa Cells ; Host-Pathogen Interactions ; Humans ; Plasmids/genetics ; Protein Binding ; Reproducibility of Results
Czasopismo naukowe
Tytuł :
Establishment of tetracycline-regulated bimolecular fluorescence complementation assay to detect protein-protein interactions in Candida albicans.
Autorzy :
Lai WC; Department of Biomedical Sciences, Chung Shan Medical University, Taichung, Taiwan, ROC.; Institute of Molecular Medicine, National Cheng Kung University Medical College, Tainan, Taiwan, R. O. C.
Sun HS; Institute of Molecular Medicine, College of Medicine, National Cheng Kung University, Tainan, Taiwan, R. O. C.
Shieh JC; Department of Biomedical Sciences, Chung Shan Medical University, Taichung, Taiwan, ROC. .; Department of Medical Research, Chung Shan Medical University Hospital, Taichung, Taiwan, R. O. C.. .; Immunology Research Centre, Chung Shan Medical University, Taichung, Taiwan, R. O. C.. .
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Źródło :
Scientific reports [Sci Rep] 2020 Feb 19; Vol. 10 (1), pp. 2936. Date of Electronic Publication: 2020 Feb 19.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Protein Interaction Mapping*
Biological Assay/*methods
Candida albicans/*metabolism
Fungal Proteins/*metabolism
Tetracycline/*pharmacology
Candida albicans/drug effects ; Candida albicans/genetics ; Doxycycline/pharmacology ; Fluorescence ; Gene Expression Regulation, Fungal/drug effects ; Genetic Markers ; Hygromycin B/pharmacology ; Luminescent Proteins/metabolism ; Protein Binding/drug effects ; Septins/metabolism
Czasopismo naukowe
Tytuł :
Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network.
Autorzy :
Zinovyev A; Institut Curie, PSL Research University, F-75005 Paris, France.; INSERM, U900, F-75005 Paris, France.; MINES ParisTech, PSL Research University, CBIO-Centre for Computational Biology, F-75006 Paris, France.
Czerwinska U; Institut Curie, PSL Research University, F-75005 Paris, France.; INSERM, U900, F-75005 Paris, France.; MINES ParisTech, PSL Research University, CBIO-Centre for Computational Biology, F-75006 Paris, France.
Cantini L; Institut Curie, PSL Research University, F-75005 Paris, France.; INSERM, U900, F-75005 Paris, France.; MINES ParisTech, PSL Research University, CBIO-Centre for Computational Biology, F-75006 Paris, France.; Computational Systems Biology Team, Institut de Biologie de l'Ecole Normale Supérieure, CNRS UMR8197, INSERM U1024, Ecole Normale Supérieure, PSL Research University, F-75005 Paris, France.
Barillot E; Institut Curie, PSL Research University, F-75005 Paris, France.; INSERM, U900, F-75005 Paris, France.; MINES ParisTech, PSL Research University, CBIO-Centre for Computational Biology, F-75006 Paris, France.
Frahm KM; Laboratoire de Physique Théorique, IRSAMC, Université de Toulouse, CNRS, UPS, F-31062 Toulouse, France.
Shepelyansky DL; Laboratoire de Physique Théorique, IRSAMC, Université de Toulouse, CNRS, UPS, F-31062 Toulouse, France.
Pokaż więcej
Źródło :
PLoS computational biology [PLoS Comput Biol] 2020 Feb 18; Vol. 16 (2), pp. e1007652. Date of Electronic Publication: 2020 Feb 18 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Biological Phenomena*
Protein Interaction Mapping*
Search Engine*
Computational Biology/*methods
Proteins/*chemistry
Algorithms ; Cluster Analysis ; Databases, Genetic ; Internet ; Markov Chains ; Probability
Czasopismo naukowe

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