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Wyszukujesz frazę ""Protein Interaction Maps"" wg kryterium: Temat


Tytuł:
High-Efficiency Enrichment by Saturating Nanoliters of Protein Affinity Media.
Autorzy:
Raval S; Department of Biochemistry and Molecular Biology, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Canada T2N 4N1.; Department of Chemistry, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Canada T2N 4N1.
Douglas P; Department of Biochemistry and Molecular Biology, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Canada T2N 4N1.
Laurent D; Department of Biochemistry and Molecular Biology, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Canada T2N 4N1.
Khan MF; Department of Biochemistry and Molecular Biology, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Canada T2N 4N1.
Lees-Miller SP; Department of Biochemistry and Molecular Biology, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Canada T2N 4N1.
Schriemer DC; Department of Biochemistry and Molecular Biology, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Canada T2N 4N1.; Department of Chemistry, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta, Canada T2N 4N1.
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Źródło:
Analytical chemistry [Anal Chem] 2023 Oct 31; Vol. 95 (43), pp. 15884-15892. Date of Electronic Publication: 2023 Oct 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Proteins*/metabolism
Protein Interaction Maps*
Humans ; HeLa Cells ; Chromatography, Affinity/methods ; Chemical Phenomena
Czasopismo naukowe
Tytuł:
TALKIEN: crossTALK IntEraction Network. A web-based tool for deciphering molecular communication through ligand-receptor interactions.
Autorzy:
Moratalla-Navarro F; Unit of Biomarkers and Susceptibility, Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology (ICO), Colorectal Cancer Group, ONCOBELL Program, Bellvitge Biomedical Research Institute (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.; Centro de Investigación Biomédica en Red de Epidemiologia y Salud Pública (CIBERESP), Spain.; Department of Clinical Sciences, Faculty of Medicine and Health Sciences, University of Barcelona, Barcelona, Spain.
Moreno V; Unit of Biomarkers and Susceptibility, Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology (ICO), Colorectal Cancer Group, ONCOBELL Program, Bellvitge Biomedical Research Institute (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.; Centro de Investigación Biomédica en Red de Epidemiologia y Salud Pública (CIBERESP), Spain.; Department of Clinical Sciences, Faculty of Medicine and Health Sciences, University of Barcelona, Barcelona, Spain.
Sanz-Pamplona R; Unit of Biomarkers and Susceptibility, Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology (ICO), Colorectal Cancer Group, ONCOBELL Program, Bellvitge Biomedical Research Institute (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.; Centro de Investigación Biomédica en Red de Epidemiologia y Salud Pública (CIBERESP), Spain.; University Hospital Lozano Blesa, Aragon Health Research Institute (IISA), ARAID Foundation, Aragon Government, Zaragoza, Spain. .
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Źródło:
Molecular omics [Mol Omics] 2023 Oct 30; Vol. 19 (9), pp. 688-696. Date of Electronic Publication: 2023 Oct 30.
Typ publikacji:
Journal Article
MeSH Terms:
Protein Interaction Maps*
Gene Expression Profiling*/methods
Ligands ; Proteins ; Internet
Czasopismo naukowe
Tytuł:
Higher expression of PLEK and LY86 as the potential biomarker of carotid atherosclerosis.
Autorzy:
Zhao M; Neurological Rehabilitation Center, Beijing Rehabilitation Hospital Affiliated to Capital Medical University, Xixiazhuang, Badachu, Shijingshan District, Beijing, China.
Liu A; Neurological Rehabilitation Center, Beijing Rehabilitation Hospital Affiliated to Capital Medical University, Xixiazhuang, Badachu, Shijingshan District, Beijing, China.
Mo L; Neurological Rehabilitation Center, Beijing Rehabilitation Hospital Affiliated to Capital Medical University, Xixiazhuang, Badachu, Shijingshan District, Beijing, China.
Wan G; Neurological Rehabilitation Center, Beijing Rehabilitation Hospital Affiliated to Capital Medical University, Xixiazhuang, Badachu, Shijingshan District, Beijing, China.
Lu F; Neurological Rehabilitation Center, Beijing Rehabilitation Hospital Affiliated to Capital Medical University, Xixiazhuang, Badachu, Shijingshan District, Beijing, China.
Chen L; Department of Vascular Surgery, Fuxing Hospital Affiliated to Capital Medical University, Xicheng District, Beijing, China.
Fu S; Department of Cardiovascular Medicine, Jilin Provincial People's Hospital, Chaoyang District, Changchun City, Jilin Province, China.
Chen H; Department of Urology, China Aerospace Science & Industry Corporation 731 Hospital, Feng Tai District, Beijing, China.
Fu T; Department of Urology, China Aerospace Science & Industry Corporation 731 Hospital, Feng Tai District, Beijing, China.
Deng H; Department of Vascular Surgery, Fuxing Hospital Affiliated to Capital Medical University, Xicheng District, Beijing, China.
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Źródło:
Medicine [Medicine (Baltimore)] 2023 Oct 20; Vol. 102 (42), pp. e34445.
Typ publikacji:
Journal Article
MeSH Terms:
Protein Interaction Maps*/genetics
Carotid Artery Diseases*/genetics
Humans ; Biomarkers ; Gene Expression Profiling ; Computational Biology ; Gene Regulatory Networks ; Antigens, Surface
Czasopismo naukowe
Tytuł:
Evolutionary Consequences of Functional and Regulatory Divergence of HD-Zip I Transcription Factors as a Source of Diversity in Protein Interaction Networks in Plants.
Autorzy:
Żyła N; Institute of Plant Genetics, Polish Academy of Sciences, Strzeszyńska 34, 60-479, Poznan, Poland.
Babula-Skowrońska D; Institute of Plant Genetics, Polish Academy of Sciences, Strzeszyńska 34, 60-479, Poznan, Poland. .
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Źródło:
Journal of molecular evolution [J Mol Evol] 2023 Oct; Vol. 91 (5), pp. 581-597. Date of Electronic Publication: 2023 Jun 23.
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcription Factors*/genetics
Transcription Factors*/metabolism
Protein Interaction Maps*
Phylogeny ; Leucine Zippers/genetics ; Plant Proteins/genetics ; Gene Expression Regulation, Plant/genetics
Czasopismo naukowe
Tytuł:
The potential of cross-linking mass spectrometry in the development of protein-protein interaction modulators.
Autorzy:
Ruwolt M; Department of Structural Biology, Leibniz, Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Roessle-Str. 10, 13125 Berlin, Germany. Electronic address: https:.
Piazza I; Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC Berlin), Berlin, Germany. Electronic address: .
Liu F; Department of Structural Biology, Leibniz, Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Roessle-Str. 10, 13125 Berlin, Germany; Charité - Universitätsmedizin Berlin, Charitépl. 1, 10117 Berlin, Germany. Electronic address: .
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Źródło:
Current opinion in structural biology [Curr Opin Struct Biol] 2023 Oct; Vol. 82, pp. 102648. Date of Electronic Publication: 2023 Jul 07.
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
Protein Interaction Maps*
Mass Spectrometry/methods ; Protein Binding ; Cross-Linking Reagents/chemistry
Czasopismo naukowe
Tytuł:
Decision tree classifier based on topological characteristics of subgraph for the mining of protein complexes from large scale PPI networks.
Autorzy:
Sahoo TR; Bioinformatics Lab, Department of Computer Science, IIIT, Bhubaneswar, India. Electronic address: .
Patra S; Bioinformatics Lab, Department of Computer Science, IIIT, Bhubaneswar, India. Electronic address: .
Vipsita S; Bioinformatics Lab, Department of Computer Science, IIIT, Bhubaneswar, India. Electronic address: .
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Źródło:
Computational biology and chemistry [Comput Biol Chem] 2023 Oct; Vol. 106, pp. 107935. Date of Electronic Publication: 2023 Jul 25.
Typ publikacji:
Journal Article
MeSH Terms:
Protein Interaction Maps*
Protein Interaction Mapping*/methods
Humans ; Fungal Proteins/metabolism ; Saccharomyces cerevisiae/metabolism ; Algorithms ; Computational Biology/methods ; Cluster Analysis ; Decision Trees
Czasopismo naukowe
Tytuł:
The development of proximity labeling technology and its applications in mammals, plants, and microorganisms.
Autorzy:
Guo J; School of Basic Medical Sciences, Xianning Medical College, Hubei University of Science and Technology, Xianning, Hubei, 437000, China.; School of Pharmacy, Xianning Medical College, Hubei University of Science and Technology, Xianning, Hubei, 437000, China.
Guo S; Medicine Research Institute, Hubei Key Laboratory of Diabetes and Angiopathy, Xianning Medical College, Hubei University of Science and Technology, Xianning, Hubei, 437000, China.
Lu S; School of Basic Medical Sciences, Xianning Medical College, Hubei University of Science and Technology, Xianning, Hubei, 437000, China.; School of Pharmacy, Xianning Medical College, Hubei University of Science and Technology, Xianning, Hubei, 437000, China.
Gong J; School of Pharmacy, Xianning Medical College, Hubei University of Science and Technology, Xianning, Hubei, 437000, China.
Wang L; School of Basic Medical Sciences, Xianning Medical College, Hubei University of Science and Technology, Xianning, Hubei, 437000, China.
Ding L; School of Pharmacy, Xianning Medical College, Hubei University of Science and Technology, Xianning, Hubei, 437000, China.
Chen Q; School of Pharmacy, Xianning Medical College, Hubei University of Science and Technology, Xianning, Hubei, 437000, China. .
Liu W; School of Basic Medical Sciences, Xianning Medical College, Hubei University of Science and Technology, Xianning, Hubei, 437000, China. .
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Źródło:
Cell communication and signaling : CCS [Cell Commun Signal] 2023 Sep 30; Vol. 21 (1), pp. 269. Date of Electronic Publication: 2023 Sep 30.
Typ publikacji:
Video-Audio Media; Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
Proteins*
Protein Interaction Maps*
Animals ; Mammals
Czasopismo naukowe
Tytuł:
Joint embedding of biological networks for cross-species functional alignment.
Autorzy:
Li L; Department of Computer Science, Rice University, Houston, TX 77005, United States.
Dannenfelser R; Department of Computer Science, Rice University, Houston, TX 77005, United States.
Zhu Y; Department of Electrical and Computer Engineering, Rice University, Houston, TX 77005, United States.
Hejduk N; Department of Computer Science, Rice University, Houston, TX 77005, United States.
Segarra S; Department of Electrical and Computer Engineering, Rice University, Houston, TX 77005, United States.
Yao V; Department of Computer Science, Rice University, Houston, TX 77005, United States.
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Źródło:
Bioinformatics (Oxford, England) [Bioinformatics] 2023 Sep 02; Vol. 39 (9).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Drug Repositioning*
Protein Interaction Maps*
Humans ; Natural Language Processing
Czasopismo naukowe
Tytuł:
ActivePPI: quantifying protein-protein interaction network activity with Markov random fields.
Autorzy:
Wang C; Department of Biomedical Engineering, School of Control Science and Engineering, Shandong University, Jinan, Shandong 250061, China.
Xu S; Department of Biomedical Engineering, School of Control Science and Engineering, Shandong University, Jinan, Shandong 250061, China.
Sun D; School of Mathematics, Shandong University, Jinan, Shandong 250100, China.
Liu ZP; Department of Biomedical Engineering, School of Control Science and Engineering, Shandong University, Jinan, Shandong 250061, China.
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Źródło:
Bioinformatics (Oxford, England) [Bioinformatics] 2023 Sep 02; Vol. 39 (9).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Protein Interaction Maps*
Knowledge Bases*
Mass Spectrometry ; Phenotype ; Probability
Czasopismo naukowe
Tytuł:
LEVELNET to visualize, explore, and compare protein-protein interaction networks.
Autorzy:
Mohseni Behbahani Y; Sorbonne Université, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238, Paris, France.
Saighi P; Sorbonne Université, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238, Paris, France.
Corsi F; Sorbonne Université, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238, Paris, France.
Laine E; Sorbonne Université, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238, Paris, France.
Carbone A; Sorbonne Université, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238, Paris, France.
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Źródło:
Proteomics [Proteomics] 2023 Sep; Vol. 23 (17), pp. e2200159. Date of Electronic Publication: 2023 Jul 04.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Protein Interaction Maps*
Protein Interaction Mapping*/methods
Proteins/metabolism ; Databases, Protein ; Computational Biology
Czasopismo naukowe
Tytuł:
Molecular complex detection in protein interaction networks through reinforcement learning.
Autorzy:
Palukuri MV; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX, 78712, USA. .; Oden Institute for Computational Engineering and Sciences, University of Texas, Austin, TX, 78712, USA. .
Patil RS; Department of Biomedical Engineering, University of Texas, Austin, TX, 78712, USA. .
Marcotte EM; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX, 78712, USA. .; Oden Institute for Computational Engineering and Sciences, University of Texas, Austin, TX, 78712, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Aug 02; Vol. 24 (1), pp. 306. Date of Electronic Publication: 2023 Aug 02.
Typ publikacji:
Journal Article
MeSH Terms:
Protein Interaction Maps*
Algorithms*
Humans ; Transcription Factors ; Protein Interaction Mapping/methods ; Computational Biology/methods ; Glycoproteins ; Nuclear Proteins ; Cell Cycle Proteins ; Molecular Chaperones
Czasopismo naukowe
Tytuł:
PCGAN: a generative approach for protein complex identification from protein interaction networks.
Autorzy:
Pan Y; Department of Computer Science and Technology, Tongji University, Shanghai 201804, China.
Wang Y; Department of Computer Science and Technology, Tongji University, Shanghai 201804, China.
Guan J; Department of Computer Science and Technology, Tongji University, Shanghai 201804, China.
Zhou S; Shanghai Key Laboratory of Intelligent Information Processing, and School of Computer Science, Fudan University, Shanghai 200438, China.
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Źródło:
Bioinformatics (Oxford, England) [Bioinformatics] 2023 Aug 01; Vol. 39 (8).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Protein Interaction Maps*
Saccharomyces cerevisiae*/metabolism
Humans ; Signal Transduction ; Protein Biosynthesis
Czasopismo naukowe
Tytuł:
Prognostic Values of Core Genes in Pilocytic Astrocytom.
Autorzy:
Zhang S; Shantou University Medical College, Shantou University, Shantou, China; Department of Radiology, Shenzhen Children's Hospital, Shenzhen, China.
Luo Y; Shantou University Medical College, Shantou University, Shantou, China; Department of Radiology, Shenzhen Children's Hospital, Shenzhen, China.
Sun W; Shantou University Medical College, Shantou University, Shantou, China; Department of Radiology, Shenzhen Children's Hospital, Shenzhen, China.
Tan W; Department of Radiology, Shenzhen Children's Hospital, Shenzhen, China.
Zeng H; Department of Radiology, Shenzhen Children's Hospital, Shenzhen, China. Electronic address: .
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Źródło:
World neurosurgery [World Neurosurg] 2023 Aug; Vol. 176, pp. e101-e108. Date of Electronic Publication: 2023 May 09.
Typ publikacji:
Journal Article
MeSH Terms:
Biomarkers, Tumor*/genetics
Biomarkers, Tumor*/metabolism
Protein Interaction Maps*/genetics
Child ; Humans ; Adolescent ; Prognosis ; Gene Expression Profiling ; gamma-Aminobutyric Acid/metabolism ; Computational Biology ; Gene Expression Regulation, Neoplastic/genetics
Czasopismo naukowe
Tytuł:
A robust protein language model for SARS-CoV-2 protein-protein interaction network prediction.
Autorzy:
Ozger ZB; Department of Computer Engineering, Sutcu Imam University, 46040, Kahramanmaras, Turkey. Electronic address: .
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Źródło:
Artificial intelligence in medicine [Artif Intell Med] 2023 Aug; Vol. 142, pp. 102574. Date of Electronic Publication: 2023 May 06.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Protein Interaction Maps*
COVID-19*
Humans ; Bayes Theorem ; SARS-CoV-2 ; Algorithms
Czasopismo naukowe
Tytuł:
AMEND: active module identification using experimental data and network diffusion.
Autorzy:
Boyd SS; Department of Biostatistics and Data Science, University of Kansas Medical Center, 3901 Rainbow Blvd., Kansas City, KS, 66103, USA.; University of Kansas Cancer Center, Kansas City, KS, USA.
Slawson C; Department of Biochemistry, University of Kansas Medical Center, 3901 Rainbow Blvd., Kansas City, KS, 66103, USA.; University of Kansas Cancer Center, Kansas City, KS, USA.; University of Kansas Alzheimer's Disease Research Center, Fairway, KS, USA.
Thompson JA; Department of Biostatistics and Data Science, University of Kansas Medical Center, 3901 Rainbow Blvd., Kansas City, KS, 66103, USA. .; University of Kansas Cancer Center, Kansas City, KS, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Jul 06; Vol. 24 (1), pp. 277. Date of Electronic Publication: 2023 Jul 06.
Typ publikacji:
Journal Article
MeSH Terms:
Protein Interaction Mapping*/methods
Protein Interaction Maps*
Algorithms ; Gene Expression Profiling/methods ; Transcriptome ; Gene Regulatory Networks
Czasopismo naukowe
Tytuł:
Characterizing alternative splicing effects on protein interaction networks with LINDA.
Autorzy:
Gjerga E; Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, University Hospital Heidelberg, Heidelberg 69120, Germany.; Department of Internal Medicine III (Cardiology, Angiology, and Pneumology), University Hospital Heidelberg, Heidelberg 69120, Germany.; German Centre for Cardiovascular Research (DZHK), Partner Site Heidelberg/Mannheim, Heidelberg 69120, Germany.
Naarmann-de Vries IS; Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, University Hospital Heidelberg, Heidelberg 69120, Germany.; Department of Internal Medicine III (Cardiology, Angiology, and Pneumology), University Hospital Heidelberg, Heidelberg 69120, Germany.; German Centre for Cardiovascular Research (DZHK), Partner Site Heidelberg/Mannheim, Heidelberg 69120, Germany.
Dieterich C; Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, University Hospital Heidelberg, Heidelberg 69120, Germany.; Department of Internal Medicine III (Cardiology, Angiology, and Pneumology), University Hospital Heidelberg, Heidelberg 69120, Germany.; German Centre for Cardiovascular Research (DZHK), Partner Site Heidelberg/Mannheim, Heidelberg 69120, Germany.
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Źródło:
Bioinformatics (Oxford, England) [Bioinformatics] 2023 Jun 30; Vol. 39 (39 Suppl 1), pp. i458-i464.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Alternative Splicing*
Protein Interaction Maps*
RNA Splicing ; Benchmarking ; Data Analysis
Czasopismo naukowe
Tytuł:
Systems-level analyses of protein-protein interaction network dysfunctions via epichaperomics identify cancer-specific mechanisms of stress adaptation.
Autorzy:
Rodina A; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Xu C; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Digwal CS; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Joshi S; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Patel Y; Department of Biochemistry, Groupe de Recherche Axé sur la Structure des Protéines, McGill University, Montreal, QC, H3G 0B1, Canada.
Santhaseela AR; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Bay S; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Merugu S; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Alam A; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Yan P; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Yang C; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.; Changhai Hospital, Second Military Medical University, Shanghai, China.
Roychowdhury T; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Panchal P; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Shrestha L; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Kang Y; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Sharma S; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Almodovar J; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Corben A; Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.; Maimonides Medical Center, Brooklyn, NY, USA.
Alpaugh ML; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.; Rowan University, Glassboro, NJ, USA.
Modi S; Department of Medicine, Division of Solid Tumors, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Guzman ML; Department of Medicine, Division of Hematology Oncology, Weill Cornell Medicine, New York, NY, 10065, USA.
Fei T; Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Taldone T; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Ginsberg SD; Departments of Psychiatry, Neuroscience & Physiology & the NYU Neuroscience Institute, NYU Grossman School of Medicine, New York, NY, 10016, USA.; Center for Dementia Research, Nathan Kline Institute, Orangeburg, NY, 10962, USA.
Erdjument-Bromage H; Department of Neuroscience and Physiology and Neuroscience Institute, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Neubert TA; Department of Neuroscience and Physiology and Neuroscience Institute, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Manova-Todorova K; Cell Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Tsou MB; Cell Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Young JC; Department of Biochemistry, Groupe de Recherche Axé sur la Structure des Protéines, McGill University, Montreal, QC, H3G 0B1, Canada.
Wang T; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA. .
Chiosis G; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA. .; Department of Medicine, Division of Solid Tumors, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA. .
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Źródło:
Nature communications [Nat Commun] 2023 Jun 23; Vol. 14 (1), pp. 3742. Date of Electronic Publication: 2023 Jun 23.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Protein Interaction Maps*
Neoplasms*/genetics
Humans ; Proteome/metabolism ; Protein Interaction Mapping ; Acclimatization
Czasopismo naukowe
Tytuł:
The computational capabilities of many-to-many protein interaction networks.
Autorzy:
Klumpe HE; Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA; Biological Design Center, Boston University, Boston, MA 02215, USA.
Garcia-Ojalvo J; Department of Medicine and Life Sciences, Pompeu Fabra University, 08003 Barcelona, Spain. Electronic address: .
Elowitz MB; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address: .
Antebi YE; Department of Molecular Genetics, Weizmann Institute of Science 76100, Rehovot, Israel. Electronic address: .
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Źródło:
Cell systems [Cell Syst] 2023 Jun 21; Vol. 14 (6), pp. 430-446.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Protein Interaction Maps*
Czasopismo naukowe
Tytuł:
A partially shared joint clustering framework for detecting protein complexes from multiple state-specific signed interaction networks.
Autorzy:
Zhan Y; Guangdong Key Laboratory of Intelligent Information Processing, Shenzhen Key Laboratory of Media Security, and Guangdong Laboratory of Artificial Intelligence and Digital Economy(SZ), College of Electronics and Information Engineering, Shenzhen University, Shenzhen, 518060, China.
Liu J; Guangdong Key Laboratory of Intelligent Information Processing, Shenzhen Key Laboratory of Media Security, and Guangdong Laboratory of Artificial Intelligence and Digital Economy(SZ), College of Electronics and Information Engineering, Shenzhen University, Shenzhen, 518060, China.
Wu M; Institute for Infocomm Research (I2R), Agency of Science, Technology, and Research (A*STAR), 138632, Singapore.
Tan CSH; Department of Chemistry, College of Science, Southern University of Science and Technology, Shenzhen, 518055, China.
Li X; Institute for Infocomm Research (I2R), Agency of Science, Technology, and Research (A*STAR), 138632, Singapore.
Ou-Yang L; Guangdong Key Laboratory of Intelligent Information Processing, Shenzhen Key Laboratory of Media Security, and Guangdong Laboratory of Artificial Intelligence and Digital Economy(SZ), College of Electronics and Information Engineering, Shenzhen University, Shenzhen, 518060, China; Shenzhen Institute of Artificial Intelligence and Robotics for Society, Shenzhen, 518129, China. Electronic address: .
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Źródło:
Computers in biology and medicine [Comput Biol Med] 2023 Jun; Vol. 159, pp. 106936. Date of Electronic Publication: 2023 Apr 20.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Protein Interaction Mapping*/methods
Protein Interaction Maps*
Proteins ; Cluster Analysis ; Algorithms ; Computational Biology/methods
Czasopismo naukowe
Tytuł:
Differential gene expression and protein-protein interaction networks of human periodontal ligament stromal cells under mechanical tension.
Autorzy:
Janjić K; Competence Center Periodontal Research, University Clinic of Dentistry, Medical University of Vienna, Sensengasse 2a, 1090 Vienna, Austria; Center of Clinical Research, University Clinic of Dentistry, Medical University of Vienna, Sensengasse 2a, 1090 Vienna, Austria.
Nemec M; Clinical Division of Orthodontics, University Clinic of Dentistry, Medical University of Vienna, Sensengasse 2a, 1090 Vienna, Austria.
Maaser JL; Center of Clinical Research, University Clinic of Dentistry, Medical University of Vienna, Sensengasse 2a, 1090 Vienna, Austria.
Sagl B; Center of Clinical Research, University Clinic of Dentistry, Medical University of Vienna, Sensengasse 2a, 1090 Vienna, Austria.
Jonke E; Clinical Division of Orthodontics, University Clinic of Dentistry, Medical University of Vienna, Sensengasse 2a, 1090 Vienna, Austria.
Andrukhov O; Competence Center Periodontal Research, University Clinic of Dentistry, Medical University of Vienna, Sensengasse 2a, 1090 Vienna, Austria. Electronic address: .
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Źródło:
European journal of cell biology [Eur J Cell Biol] 2023 Jun; Vol. 102 (2), pp. 151319. Date of Electronic Publication: 2023 Apr 26.
Typ publikacji:
Journal Article
MeSH Terms:
Periodontal Ligament*/metabolism
Protein Interaction Maps*
Humans ; Stress, Mechanical ; Tooth Movement Techniques ; Transcriptome
Czasopismo naukowe

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