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Tytuł:
A seed expansion-based method to identify essential proteins by integrating protein-protein interaction sub-networks and multiple biological characteristics.
Autorzy:
Zhao H; College of Computer Science and Technology, Jilin University, Changchun, China.; Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, China.
Liu G; College of Computer Science and Technology, Jilin University, Changchun, China. .; Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, China. .
Cao X; College of Computer Science and Technology, Jilin University, Changchun, China.; Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, China.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Nov 30; Vol. 24 (1), pp. 452. Date of Electronic Publication: 2023 Nov 30.
Typ publikacji:
Journal Article
MeSH Terms:
Protein Interaction Mapping*/methods
Computational Biology*/methods
Protein Interaction Maps ; Proteins/metabolism ; Algorithms
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
SANA: cross-species prediction of Gene Ontology GO annotations via topological network alignment.
Autorzy:
Wang S; Department of Computer Science, University of California, Irvine, CA, 92697-3435, USA.
Atkinson GRS; Department of Computer Science, University of California, Irvine, CA, 92697-3435, USA.
Hayes WB; Department of Computer Science, University of California, Irvine, CA, 92697-3435, USA. .
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Źródło:
NPJ systems biology and applications [NPJ Syst Biol Appl] 2022 Jul 20; Vol. 8 (1), pp. 25. Date of Electronic Publication: 2022 Jul 20.
Typ publikacji:
Journal Article
MeSH Terms:
Computational Biology*/methods
Protein Interaction Maps*/genetics
Gene Ontology ; Oligopeptides ; Proteins/genetics ; Proteins/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Network analytics for drug repurposing in COVID-19.
Autorzy:
Siminea N; Faculty of Mathematics and Computer Science, ICUB, University of Bucharest, Romania and Department of Bioinformatics, National Institute of Research and Development for Biological Sciences, Romania.
Popescu V; Department of Information Technologies, Åbo Akademi University, Turku, Finland.
Sanchez Martin JA; Departamento de Sistemas Informáticos, Universidad Politécnica de Madrid, Spain.
Florea D; Department of Bioinformatics, National Institute of Research and Development for Biological Sciences, Romania.
Gavril G; Department of Bioinformatics, National Institute of Research and Development for Biological Sciences, Romania.
Gheorghe AM; Department of Bioinformatics, National Institute of Research and Development for Biological Sciences, Romania.
Iţcuş C; Department of Arctic and Antarctic Research, National Institute of Research and Development for Biological Sciences, Romania and Romanian Young Academy, University of Bucharest, Romania.
Kanhaiya K; Department of Information Technologies, Åbo Akademi University, Turku, Finland.
Pacioglu O; Department of Bioinformatics, National Institute of Research and Development for Biological Sciences, Romania.
Popa LL; Department of Microbiology and Immunology, Faculty of Biology, University of Bucharest, Bucharest, Romania and Department of Bioinformatics, National Institute of Research and Development for Biological Sciences, Bucharest, Romania.
Trandafir R; Department of Bioinformatics, National Institute of Research and Development for Biological Sciences, Bucharest, Romania, and Department of Mathematics and Computer Science, Technical University of Civil Engineering Bucharest, Romania.
Tusa MI; Department of Arctic and Antarctic Research, National Institute of Research and Development for Biological Sciences, Romania.
Sidoroff M; Department of Arctic and Antarctic Research, National Institute of Research and Development for Biological Sciences, Romania.
Păun M; Department of Bioinformatics, National Institute of Research and Development for Biological Sciences, Romania, and Faculty of Administration and Business, Research Institute of the University of Bucharest-ICUB, University of Bucharest, Romania.
Czeizler E; Department of Bioinformatics, National Institute of Research and Development for Biological Sciences, Romania.
Păun A; Faculty of Mathematics and Computer Science, ICUB, University of Bucharest, Romania, and Department of Bioinformatics, National Institute of Research and Development for Biological Sciences, Romania.
Petre I; Department of Mathematics and Statistics, University of Turku, 20014 Turku, Finland and National Institute of Research and Development for Biological Sciences, 296 Independenţei Bd. District 6, 060031 Bucharest, Romania.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2022 Jan 17; Vol. 23 (1).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Antiviral Agents*/chemistry
Antiviral Agents*/pharmacokinetics
COVID-19*/genetics
COVID-19*/metabolism
Computational Biology*
Drug Repositioning*
Protein Interaction Maps*
SARS-CoV-2*/genetics
SARS-CoV-2*/metabolism
COVID-19 Drug Treatment*
Humans
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
MARPPI: boosting prediction of protein-protein interactions with multi-scale architecture residual network.
Autorzy:
Li X; School of Computer Science and Technology, China University of Petroleum, Qingdao 266580, China.
Han P; School of Computer Science and Technology, China University of Petroleum, Qingdao 266580, China.
Chen W; School of Computer Science and Technology, China University of Petroleum, Qingdao 266580, China.
Gao C; School of Computer Science and Technology, China University of Petroleum, Qingdao 266580, China.
Wang S; School of Computer Science and Technology, China University of Petroleum, Qingdao 266580, China.
Song T; School of Computer Science and Technology, China University of Petroleum, Qingdao 266580, China.
Niu M; School of Computer Science and Technology, China University of Petroleum, Qingdao 266580, China.
Rodriguez-Patón A; School of Computer Science and Technology, China University of Petroleum, Qingdao 266580, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Jan 19; Vol. 24 (1).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Protein Interaction Mapping*/methods
Computational Biology*/methods
Humans ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism ; Protein Interaction Maps ; Amino Acids/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks.
Autorzy:
Palukuri MV; Oden Institute for Computational Engineering and Sciences, The University of Texas at Austin, Austin, Texas, United States of America.
Marcotte EM; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, United States of America.
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Źródło:
PloS one [PLoS One] 2021 Dec 31; Vol. 16 (12), pp. e0262056. Date of Electronic Publication: 2021 Dec 31 (Print Publication: 2021).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Protein Interaction Maps*
Supervised Machine Learning*
Computational Biology/*methods
Proteins/*immunology
Viral Proteins/*immunology
COVID-19/immunology ; Humans ; Protein Binding ; Protein Interaction Mapping ; SARS-CoV-2/immunology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Crosstalk between Venous Thromboembolism and Periodontal Diseases: A Bioinformatics Analysis.
Autorzy:
He Z; Department of Cardiovascular Surgery, The Third Affiliated Hospital of Chongqing Medical University, Shuanghu Branch Road No. 1, Yubei District, Chongqing 401120, China.
Jiang Q; Department of Cardiovascular Surgery, The Third Affiliated Hospital of Chongqing Medical University, Shuanghu Branch Road No. 1, Yubei District, Chongqing 401120, China.
Li F; Department of Cardiovascular Surgery, The Third Affiliated Hospital of Chongqing Medical University, Shuanghu Branch Road No. 1, Yubei District, Chongqing 401120, China.
Chen M; Department of Cardiovascular Surgery, The Third Affiliated Hospital of Chongqing Medical University, Shuanghu Branch Road No. 1, Yubei District, Chongqing 401120, China.
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Źródło:
Disease markers [Dis Markers] 2021 Dec 10; Vol. 2021, pp. 1776567. Date of Electronic Publication: 2021 Dec 10 (Print Publication: 2021).
Typ publikacji:
Journal Article
MeSH Terms:
Computational Biology*
Gene Expression Regulation*
Gene Regulatory Networks*
Protein Interaction Maps*
Periodontal Diseases/*genetics
Venous Thromboembolism/*genetics
Biomarkers/metabolism ; Case-Control Studies ; Databases, Genetic ; Genetic Markers ; Humans ; Periodontal Diseases/complications ; Periodontal Diseases/immunology ; Periodontal Diseases/metabolism ; Venous Thromboembolism/complications ; Venous Thromboembolism/immunology ; Venous Thromboembolism/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Tumor relevant protein functional interactions identified using bipartite graph analyses.
Autorzy:
Venkatraman DL; Institute of Bioinformatics and Applied Biotechnology (IBAB), Bengaluru, 560 100, India.
Pulimamidi D; Institute of Bioinformatics and Applied Biotechnology (IBAB), Bengaluru, 560 100, India.
Shukla HG; Institute of Bioinformatics and Applied Biotechnology (IBAB), Bengaluru, 560 100, India.
Hegde SR; Institute of Bioinformatics and Applied Biotechnology (IBAB), Bengaluru, 560 100, India. .
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Źródło:
Scientific reports [Sci Rep] 2021 Nov 02; Vol. 11 (1), pp. 21530. Date of Electronic Publication: 2021 Nov 02.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Computer Graphics*
Gene Expression Regulation, Neoplastic*
Gene Regulatory Networks*
Protein Interaction Maps*
Biomarkers, Tumor/*metabolism
Computational Biology/*methods
Neoplasms/*pathology
Algorithms ; Biomarkers, Tumor/genetics ; Humans ; Neoplasms/genetics ; Neoplasms/metabolism ; RNA-Seq
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Identification of differentially expressed genes and pathways in kidney of ANCA-associated vasculitis by integrated bioinformatics analysis.
Autorzy:
Deng X; Department of Nephrology, Children's Hospital of Nanjing Medical University, Nanjing, P. R. China.
Gao J; Department of Human Anantomy, Nanjing Medical University, Nanjing, P. R. China.
Zhao F; Department of Nephrology, Children's Hospital of Nanjing Medical University, Nanjing, P. R. China.
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Źródło:
Renal failure [Ren Fail] 2022 Dec; Vol. 44 (1), pp. 204-216.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Regulation, Neoplastic*
Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis/*genetics
Computational Biology/*methods
Kidney/*pathology
Protein Interaction Maps/*genetics
Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis/pathology ; Biomarkers, Tumor/genetics ; Gene Expression Profiling ; Gene Regulatory Networks ; Humans ; Prognosis ; Software
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Bioinformatic analysis identifies potential key genes of epilepsy.
Autorzy:
Zhu Y; Department of Respiratory Medicine, Hainan General Hospital, Haikou, China.
Huang D; Department of Neurology, Hainan General Hospital, Haikou, China.
Zhao Z; Department of Neurology, Hainan General Hospital, Haikou, China.
Lu C; Department of Neurology, Hainan General Hospital, Haikou, China.
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Źródło:
PloS one [PLoS One] 2021 Sep 23; Vol. 16 (9), pp. e0254326. Date of Electronic Publication: 2021 Sep 23 (Print Publication: 2021).
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Regulation*
Gene Regulatory Networks*
Protein Interaction Maps*
Biomarkers/*metabolism
Computational Biology/*methods
Epilepsy/*genetics
Biomarkers/analysis ; Case-Control Studies ; Epilepsy/pathology ; Female ; Gene Expression Profiling ; Humans ; Male
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
An iteration model for identifying essential proteins by combining comprehensive PPI network with biological information.
Autorzy:
Li S; College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, 410022, China.; Hunan Province Key Laboratory of Industrial Internet Technology and Security, Changsha University, Changsha, 410022, China.
Zhang Z; College of Electronic Information and Electrical Engineering, Changsha University, Changsha, 410022, China.
Li X; College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, 410022, China.; Hunan Province Key Laboratory of Industrial Internet Technology and Security, Changsha University, Changsha, 410022, China.
Tan Y; College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, 410022, China. .; Hunan Province Key Laboratory of Industrial Internet Technology and Security, Changsha University, Changsha, 410022, China. .
Wang L; College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, 410022, China.; Hunan Province Key Laboratory of Industrial Internet Technology and Security, Changsha University, Changsha, 410022, China.
Chen Z; College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, 410022, China. .; Hunan Province Key Laboratory of Industrial Internet Technology and Security, Changsha University, Changsha, 410022, China. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2021 Sep 08; Vol. 22 (1), pp. 430. Date of Electronic Publication: 2021 Sep 08.
Typ publikacji:
Journal Article
MeSH Terms:
Computational Biology*
Protein Interaction Maps*
Algorithms ; Protein Interaction Mapping ; Proteins/genetics ; Proteins/metabolism ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Identification of hub genes and candidate herbal treatment in obesity through integrated bioinformatic analysis and reverse network pharmacology.
Autorzy:
Tai Y; Changchun University of Chinese Medicine, Changchun, 130117, China.
Tian H; Changchun University of Chinese Medicine, Changchun, 130117, China.
Yang X; Jilin Ginseng Academy, Changchun University of Chinese Medicine, Changchun, 130117, China.
Feng S; Beijing University of Chinese Medicine, Beijing, 100029, China.
Chen S; Department of Acupuncture and Tuina, Changchun University of Chinese Medicine, Changchun, 130117, China.; Acupuncture and Massage Center of the Third Affiliated Clinical Hospital, Changchun University of Chinese Medicine, Changchun, 130117, China.
Zhong C; Department of Acupuncture and Tuina, Changchun University of Chinese Medicine, Changchun, 130117, China.
Gao T; Changchun University of Chinese Medicine, Changchun, 130117, China.
Gang X; Department of Acupuncture and Tuina, Changchun University of Chinese Medicine, Changchun, 130117, China.
Liu M; Department of Acupuncture and Tuina, Changchun University of Chinese Medicine, Changchun, 130117, China. prof_.; Acupuncture and Massage Center of the Third Affiliated Clinical Hospital, Changchun University of Chinese Medicine, Changchun, 130117, China. prof_.
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Źródło:
Scientific reports [Sci Rep] 2022 Oct 12; Vol. 12 (1), pp. 17113. Date of Electronic Publication: 2022 Oct 12.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Computational Biology*
Matrix Metalloproteinase 2*/genetics
Cholesterol ; Gene Expression Profiling ; Humans ; Matrix Metalloproteinase 7/genetics ; Matrix Metalloproteinase 9/genetics ; Network Pharmacology ; Obesity/drug therapy ; Obesity/genetics ; Phosphatidylinositol 3-Kinases/genetics ; Protein Interaction Maps/genetics ; Proto-Oncogene Proteins c-akt/genetics ; Quercetin
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Identification of core genes and pathways between geriatric multimorbidity and renal insufficiency: potential therapeutic agents discovered using bioinformatics analysis.
Autorzy:
Zhang L; Department of Nephrology, Huadong Hospital Affiliated to Fudan University, No. 221 West Yan'an Road, Shanghai, 200040, People's Republic of China.
Cai J; Department of Cardiology, Huadong Hospital Affiliated to Fudan University, No. 221 West Yan'an Road, Shanghai, 200040, People's Republic of China.
Xiao J; Department of Nephrology, Huadong Hospital Affiliated to Fudan University, No. 221 West Yan'an Road, Shanghai, 200040, People's Republic of China.; Shanghai Key Laboratory of Clinical Geriatric Medicine, No. 221 West Yan'an Road, Shanghai, 200040, People's Republic of China.
Ye Z; Department of Nephrology, Huadong Hospital Affiliated to Fudan University, No. 221 West Yan'an Road, Shanghai, 200040, People's Republic of China. .; Shanghai Key Laboratory of Clinical Geriatric Medicine, No. 221 West Yan'an Road, Shanghai, 200040, People's Republic of China. .
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Źródło:
BMC medical genomics [BMC Med Genomics] 2022 Oct 08; Vol. 15 (1), pp. 212. Date of Electronic Publication: 2022 Oct 08.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Computational Biology*
Gene Expression Profiling*
Aged ; Apolipoproteins B/genetics ; Apolipoproteins E/genetics ; Epidermal Growth Factor ; Gene Expression Regulation, Neoplastic ; Humans ; Interleukin-6/genetics ; Phosphatidylinositol 3-Kinases/genetics ; Protein Interaction Maps/genetics ; Proto-Oncogene Proteins c-akt/genetics ; von Willebrand Factor/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Identification of Key Genes and Molecular Pathways in Keratoconus: Integrating Text Mining and Bioinformatics Analysis.
Autorzy:
Hu D; Department of Ophthalmology, Children's Hospital of Fudan University, National Children's Medical Center, Shanghai 201102, China.
Lin Z; Department of Ophthalmology, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Jiang J; Department of Ophthalmology, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Li P; Department of Ophthalmology, First Hospital of Xi'an, Institute of Ophthalmology, Key Lab of Ophthalmology, Clinical Center for Ophthalmology, Xi'an 710002, China.
Zhang Z; Department of Ophthalmology, Children's Hospital of Fudan University, National Children's Medical Center, Shanghai 201102, China.
Yang C; Department of Ophthalmology, Children's Hospital of Fudan University, National Children's Medical Center, Shanghai 201102, China.
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Źródło:
BioMed research international [Biomed Res Int] 2022 Aug 23; Vol. 2022, pp. 4740141. Date of Electronic Publication: 2022 Aug 23 (Print Publication: 2022).
Typ publikacji:
Journal Article
MeSH Terms:
Computational Biology*/methods
Keratoconus*/genetics
Data Mining ; Gene Expression Profiling/methods ; Gene Ontology ; Humans ; Interleukin-17/genetics ; Protein Interaction Maps/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Exploring Key Genes and Pathways of Cardiac Hypertrophy Based on Bioinformatics.
Autorzy:
Zhang Z; Department of Cardiology, The Affiliated Yantai Yuhuangding Hospital of Qingdao University, Yantai 264000, China.
Wang C; Department of Cardiology, The Affiliated Yantai Yuhuangding Hospital of Qingdao University, Yantai 264000, China.
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Źródło:
Disease markers [Dis Markers] 2022 Aug 22; Vol. 2022, pp. 2081590. Date of Electronic Publication: 2022 Aug 22 (Print Publication: 2022).
Typ publikacji:
Journal Article
MeSH Terms:
Computational Biology*
Matrix Metalloproteinase 3*
Cardiomegaly/genetics ; ErbB Receptors/genetics ; Gene Expression Profiling ; Gene Expression Regulation, Neoplastic ; Gene Ontology ; Gene Regulatory Networks ; Humans ; Protein Interaction Maps/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Integration of Human Protein Sequence and Protein-Protein Interaction Data by Graph Autoencoder to Identify Novel Protein-Abnormal Phenotype Associations.
Autorzy:
Liu Y; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.
He R; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.; College of Life Sciences, Hebei University, Baoding 071002, China.
Qu Y; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.; College of Life Sciences, Hebei University, Baoding 071002, China.
Zhu Y; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.; School of Basic Medical Sciences, Anhui Medical University, Hefei 230032, China.
Li D; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.; College of Life Sciences, Hebei University, Baoding 071002, China.
Ling X; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.; College of Life Sciences, Hebei University, Baoding 071002, China.
Xia S; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.; School of Basic Medical Sciences, Anhui Medical University, Hefei 230032, China.
Li Z; College of Life Sciences, Hebei University, Baoding 071002, China.
Li D; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.
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Źródło:
Cells [Cells] 2022 Aug 10; Vol. 11 (16). Date of Electronic Publication: 2022 Aug 10.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Computational Biology*/methods
Proteins*
Algorithms ; Humans ; Phenotype ; Protein Interaction Maps
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
idenPC-CAP: Identify protein complexes from weighted RNA-protein heterogeneous interaction networks using co-assemble partner relation.
Autorzy:
Wu Z; School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, Guangdong, China.
Liao Q; School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, Guangdong, China.
Fan S; School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, Guangdong, China.
Liu B; School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Jul 20; Vol. 22 (4).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Computational Biology*
Databases, Genetic*
Protein Interaction Mapping*
Protein Interaction Maps*
RNA*/genetics
RNA*/metabolism
RNA-Binding Proteins*/genetics
RNA-Binding Proteins*/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Screening of Hub Genes Associated with Pulmonary Arterial Hypertension by Integrated Bioinformatic Analysis.
Autorzy:
Zeng Y; Department of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Li N; Institute of Nephrology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Zheng Z; Department of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Chen R; China State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong, China.
Peng M; Department of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Liu W; Department of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Zhu J; Department of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Zeng M; First Clinical School of Medicine, Guangdong Medical University, Zhanjiang, Guangdong, China.
Cheng J; Department of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Hong C; China State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong, China.
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Źródło:
BioMed research international [Biomed Res Int] 2021 Mar 22; Vol. 2021, pp. 6626094. Date of Electronic Publication: 2021 Mar 22 (Print Publication: 2021).
Typ publikacji:
Journal Article
MeSH Terms:
Computational Biology*
Databases, Nucleic Acid*
Gene Expression Profiling*
Gene Regulatory Networks*
Microarray Analysis*
Protein Interaction Maps*
Pulmonary Arterial Hypertension*/genetics
Pulmonary Arterial Hypertension*/metabolism
Humans
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
idenPC-MIIP: identify protein complexes from weighted PPI networks using mutual important interacting partner relation.
Autorzy:
Wu Z; School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, Guangdong, China.
Liao Q; School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, Guangdong, China.
Liu B; School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, China, and School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Mar 22; Vol. 22 (2), pp. 1972-1983.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Protein Interaction Maps*
Computational Biology/*methods
Algorithms ; Datasets as Topic ; High-Throughput Screening Assays/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Hub Gene Screening Associated with Early Glaucoma: An Integrated Bioinformatics Analysis.
Autorzy:
Tian R; Department of Ophthalmology, The Second Hospital of Jilin University, Changchun, 130041 Jilin Province, China.
Li F; Department of Ophthalmology, The Second Hospital of Jilin University, Changchun, 130041 Jilin Province, China.
Che S; Department of Ophthalmology, The Second Hospital of Jilin University, Changchun, 130041 Jilin Province, China.
Song M; Department of Ophthalmology, The Second Hospital of Jilin University, Changchun, 130041 Jilin Province, China.
Liu L; Department of Ophthalmology, The Second Hospital of Jilin University, Changchun, 130041 Jilin Province, China.
Guo R; Department of Ophthalmology, The Second Hospital of Jilin University, Changchun, 130041 Jilin Province, China.
Li Z; Department of Ophthalmology, The Second Hospital of Jilin University, Changchun, 130041 Jilin Province, China.
Hu X; Department of Ophthalmology, The Second Hospital of Jilin University, Changchun, 130041 Jilin Province, China.
Zhang H; Department of Ophthalmology, The Second Hospital of Jilin University, Changchun, 130041 Jilin Province, China.
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Źródło:
Computational and mathematical methods in medicine [Comput Math Methods Med] 2022 Jul 15; Vol. 2022, pp. 8030243. Date of Electronic Publication: 2022 Jul 15 (Print Publication: 2022).
Typ publikacji:
Journal Article; Retracted Publication
MeSH Terms:
Computational Biology*/methods
Glaucoma, Open-Angle*/genetics
Databases, Genetic ; Gene Expression Profiling/methods ; Gene Ontology ; Gene Regulatory Networks ; Humans ; Protein Interaction Mapping ; Protein Interaction Maps/genetics ; Transcriptome
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Bioinformatics Analysis of Prognosis-Related Genes and Expression of CXCL8 in Colorectal Cancer.
Autorzy:
Yao Z; Department of Pulmonary and Critical Care Medicine, The Second Affiliated Hospital of Soochow University, Suzhou 215004, China.
Pan X; Department of Pulmonary and Critical Care Medicine, The Second Affiliated Hospital of Soochow University, Suzhou 215004, China.
Chen W; Department of Nuclear Accident Medical Emergency, The Second Affiliated Hospital of Soochow University, Suzhou 215004, China.
Pei Y; Department of Pulmonary and Critical Care Medicine, The Second Affiliated Hospital of Soochow University, Suzhou 215004, China.
Chen C; Department of Pulmonary and Critical Care Medicine, The Second Affiliated Hospital of Soochow University, Suzhou 215004, China.
Huang Y; Department of Pulmonary and Critical Care Medicine, The Second Affiliated Hospital of Soochow University, Suzhou 215004, China.
Liu S; Department of Ultrasound, The Second Affiliated Hospital of Soochow University, Suzhou 215004, China.
Liu Y; Department of Nuclear Accident Medical Emergency, The Second Affiliated Hospital of Soochow University, Suzhou 215004, China.; State Key Laboratory of Radiation Medicine and Protection, School of Radiation Medicine and Protection, Collaborative Innovation Center of Radiological Medicine of Jiangsu Higher Education Institutions, Soochow University, Suzhou 215123, China.
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Źródło:
BioMed research international [Biomed Res Int] 2022 Jul 06; Vol. 2022, pp. 3149887. Date of Electronic Publication: 2022 Jul 06 (Print Publication: 2022).
Typ publikacji:
Journal Article
MeSH Terms:
Colorectal Neoplasms*/pathology
Computational Biology*/methods
Gene Expression Profiling/methods ; Gene Expression Regulation, Neoplastic/genetics ; Gene Ontology ; Humans ; Prognosis ; Protein Interaction Maps/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
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