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Wyszukujesz frazę ""Protein Structure, Secondary"" wg kryterium: Temat


Tytuł :
The β-link motif in protein architecture.
Autorzy :
Leader DP; College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, United Kingdom.
Milner-White EJ; College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, United Kingdom.
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Źródło :
Acta crystallographica. Section D, Structural biology [Acta Crystallogr D Struct Biol] 2021 Aug 01; Vol. 77 (Pt 8), pp. 1040-1049. Date of Electronic Publication: 2021 Jul 27.
Typ publikacji :
Journal Article
MeSH Terms :
Protein Structure, Secondary*
Serine Proteases/*chemistry
Amino Acid Motifs ; Animals ; Catalytic Domain ; Coronavirus 3C Proteases/chemistry ; Coronavirus 3C Proteases/metabolism ; Cysteine Proteases/chemistry ; Cysteine Proteases/metabolism ; Databases, Protein ; Humans ; Hydrogen Bonding ; Models, Molecular ; SARS-CoV-2/chemistry ; SARS-CoV-2/enzymology ; Serine Proteases/metabolism ; Structural Homology, Protein
Czasopismo naukowe
Tytuł :
Spike protein fusion loop controls SARS-CoV-2 fusogenicity and infectivity.
Autorzy :
Pal D; Indian Institute of Science, Bengaluru 560012, India. Electronic address: .
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Źródło :
Journal of structural biology [J Struct Biol] 2021 Jun; Vol. 213 (2), pp. 107713. Date of Electronic Publication: 2021 Mar 01.
Typ publikacji :
Journal Article
MeSH Terms :
Protein Domains*
Protein Structure, Secondary*
COVID-19/*prevention & control
Peptides/*chemistry
SARS-CoV-2/*metabolism
Spike Glycoprotein, Coronavirus/*chemistry
Amino Acid Sequence ; COVID-19/epidemiology ; COVID-19/virology ; Humans ; Models, Molecular ; Pandemics ; Peptides/genetics ; Peptides/metabolism ; SARS-CoV-2/genetics ; SARS-CoV-2/physiology ; Sequence Homology, Amino Acid ; Spike Glycoprotein, Coronavirus/genetics ; Spike Glycoprotein, Coronavirus/metabolism ; Static Electricity ; Viral Envelope Proteins/chemistry ; Viral Envelope Proteins/genetics ; Viral Envelope Proteins/metabolism ; Virus Internalization
Czasopismo naukowe
Tytuł :
Detecting protein and DNA/RNA structures in cryo-EM maps of intermediate resolution using deep learning.
Autorzy :
Wang X; Department of Computer Science, Purdue University, West Lafayette, IN, USA.
Alnabati E; Department of Computer Science, Purdue University, West Lafayette, IN, USA.
Aderinwale TW; Department of Computer Science, Purdue University, West Lafayette, IN, USA.
Maddhuri Venkata Subramaniya SR; Department of Computer Science, Purdue University, West Lafayette, IN, USA.
Terashi G; Department of Biological Sciences, Purdue University, West Lafayette, IN, USA.
Kihara D; Department of Computer Science, Purdue University, West Lafayette, IN, USA. .; Department of Biological Sciences, Purdue University, West Lafayette, IN, USA. .
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Źródło :
Nature communications [Nat Commun] 2021 Apr 16; Vol. 12 (1), pp. 2302. Date of Electronic Publication: 2021 Apr 16.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Deep Learning*
Models, Molecular*
Nucleic Acid Conformation*
Protein Structure, Secondary*
Computational Biology/*methods
Cryoelectron Microscopy ; DNA/ultrastructure ; RNA/ultrastructure ; Software
Czasopismo naukowe
Tytuł :
The Interplay of Cholesterol and Ligand Binding in h TSPO from Classical Molecular Dynamics Simulations.
Autorzy :
Lai HTT; VNU Key Laboratory for Multiscale Simulation of Complex Systems, VNU University of Science, Vietnam National University, Hanoi 11416, Vietnam.
Giorgetti A; Institute of Neuroscience and Medicine (INM-9), Forschungszentrum Jülich, D-52425 Jülich, Germany.; Institute for Advanced Simulation (IAS-5), Forschungszentrum Jülich, D-52425 Jülich, Germany.; Department of Biotechnology, University of Verona, Strada Le Grazie 15, 37134 Verona, Italy.
Rossetti G; Institute of Neuroscience and Medicine (INM-9), Forschungszentrum Jülich, D-52425 Jülich, Germany.; Institute for Advanced Simulation (IAS-5), Forschungszentrum Jülich, D-52425 Jülich, Germany.; Jülich Supercomputing Center (JSC), Forschungszentrum Jülich, 52428 Jülich, Germany.; University Hospital Aachen, RWTH Aachen University, 52078 Aachen, Germany.
Nguyen TT; VNU Key Laboratory for Multiscale Simulation of Complex Systems, VNU University of Science, Vietnam National University, Hanoi 11416, Vietnam.
Carloni P; Institute of Neuroscience and Medicine (INM-9), Forschungszentrum Jülich, D-52425 Jülich, Germany.; Institute for Advanced Simulation (IAS-5), Forschungszentrum Jülich, D-52425 Jülich, Germany.; Department of Physics, RWTH Aachen University, 52078 Aachen, Germany.; JARA-BRAIN Institute 'Molecular Neuroscience and Neuroimaging' INM-11, Forschungszentrum Jülich, 52428 Jülich, Germany.
Kranjc A; Institute of Neuroscience and Medicine (INM-9), Forschungszentrum Jülich, D-52425 Jülich, Germany.; Institute for Advanced Simulation (IAS-5), Forschungszentrum Jülich, D-52425 Jülich, Germany.; Laboratoire de Biochimie Théorique, UPR 9080 CNRS, Université de Paris, 13 rue Pierre et Marie Curie, F-75005 Paris, France.; Institut de Biologie Physico-Chimique-Fondation Edmond de Rotschild, PSL Research University, 75005 Paris, France.
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Źródło :
Molecules (Basel, Switzerland) [Molecules] 2021 Feb 26; Vol. 26 (5). Date of Electronic Publication: 2021 Feb 26.
Typ publikacji :
Journal Article
MeSH Terms :
Protein Structure, Secondary*
Cholesterol/*chemistry
Isoquinolines/*chemistry
Receptors, GABA/*ultrastructure
Binding Sites/genetics ; Biological Transport/genetics ; Humans ; Ligands ; Mitochondria/genetics ; Mitochondria/ultrastructure ; Models, Molecular ; Molecular Dynamics Simulation ; Protein Binding/genetics ; Protein Domains/genetics ; Protein Folding ; Receptors, GABA/chemistry
Czasopismo naukowe
Tytuł :
Genomic mutations and changes in protein secondary structure and solvent accessibility of SARS-CoV-2 (COVID-19 virus).
Autorzy :
Nguyen TT; School of Information Technology, Deakin University, Victoria, Australia. .
Pathirana PN; School of Engineering, Deakin University, Victoria, Australia.
Nguyen T; Applied Artificial Intelligence Institute (A2I2), Deakin University, Victoria, Australia.
Nguyen QVH; School of Information and Communication Technology, Griffith University, Queensland, Australia.
Bhatti A; Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Victoria, Australia.
Nguyen DC; School of Engineering, Deakin University, Victoria, Australia.
Nguyen DT; School of Information Technology, Deakin University, Victoria, Australia.
Nguyen ND; Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Victoria, Australia.
Creighton D; Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Victoria, Australia.
Abdelrazek M; School of Information Technology, Deakin University, Victoria, Australia.
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Źródło :
Scientific reports [Sci Rep] 2021 Feb 10; Vol. 11 (1), pp. 3487. Date of Electronic Publication: 2021 Feb 10.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Viral*
Mutation*
Protein Structure, Secondary*
COVID-19/*virology
SARS-CoV-2/*genetics
DNA, Viral ; Genomics ; Humans ; SARS-CoV-2/metabolism ; Spike Glycoprotein, Coronavirus/genetics ; Spike Glycoprotein, Coronavirus/metabolism
Czasopismo naukowe
Tytuł :
SPServer: split-statistical potentials for the analysis of protein structures and protein-protein interactions.
Autorzy :
Aguirre-Plans J; Structural Bioinformatics Lab, Department of Experimental and Health Science, Universitat Pompeu Fabra, 08003, Barcelona, Catalonia, Spain.
Meseguer A; Structural Bioinformatics Lab, Department of Experimental and Health Science, Universitat Pompeu Fabra, 08003, Barcelona, Catalonia, Spain.
Molina-Fernandez R; Structural Bioinformatics Lab, Department of Experimental and Health Science, Universitat Pompeu Fabra, 08003, Barcelona, Catalonia, Spain.
Marín-López MA; Structural Bioinformatics Lab, Department of Experimental and Health Science, Universitat Pompeu Fabra, 08003, Barcelona, Catalonia, Spain.
Jumde G; Structural Bioinformatics Lab, Department of Experimental and Health Science, Universitat Pompeu Fabra, 08003, Barcelona, Catalonia, Spain.
Casanova K; Structural Bioinformatics Lab, Department of Experimental and Health Science, Universitat Pompeu Fabra, 08003, Barcelona, Catalonia, Spain.
Bonet J; Laboratory of Protein Design and Immuno-Enginneering, School of Engineering, Ecole Polytechnique Federale de Lausanne, 1015, Lausanne, Vaud, Switzerland.
Fornes O; Centre for Molecular Medicine and Therapeutics, Department of Medical Genetics, BC Children's Hospital Research Institute, University of British Columbia, Vancouver, BC, V5Z 4H4, Canada.
Fernandez-Fuentes N; Department of Biosciences, U Science Tech, Universitat de Vic-Universitat Central de Catalunya, Vic 08500, Barcelona, Catalonia, Spain.; Institute of Biological, Environ-Mental and Rural Sciences, Aberystwyth University, Aberystwyth, SY23 3EB, UK.
Oliva B; Structural Bioinformatics Lab, Department of Experimental and Health Science, Universitat Pompeu Fabra, 08003, Barcelona, Catalonia, Spain. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Jan 06; Vol. 22 (1), pp. 4. Date of Electronic Publication: 2021 Jan 06.
Typ publikacji :
Journal Article
MeSH Terms :
Protein Structure, Secondary*
Proteins*/chemistry
Proteins*/metabolism
Software*
Protein Interaction Maps/*physiology
Amino Acids/chemistry ; Amino Acids/metabolism ; Internet ; Knowledge Bases ; Models, Statistical
Czasopismo naukowe
Tytuł :
Impact of protein dynamics on secondary structure prediction.
Autorzy :
de Brevern AG; Biologie Intégrée Du Globule Rouge UMR_S1134, Inserm, Université de Paris, Univ. de la Réunion, Univ. des Antilles, F-75739, Paris, France; Laboratoire D'Excellence GR-Ex, F-75739, Paris, France; Institut National de la Transfusion Sanguine (INTS), F-75739, Paris, France; IBL, F-75015, Paris, France. Electronic address: .
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Źródło :
Biochimie [Biochimie] 2020 Dec; Vol. 179, pp. 14-22. Date of Electronic Publication: 2020 Sep 15.
Typ publikacji :
Comparative Study; Journal Article
MeSH Terms :
Protein Structure, Secondary*
Computational Biology/*methods
Proteins/*chemistry
Sequence Analysis, Protein/*methods
Algorithms ; Databases, Protein ; Molecular Dynamics Simulation ; Protein Stability ; Software
Czasopismo naukowe
Tytuł :
Determination and evaluation of secondary structure content derived from calcium-induced conformational changes in wild-type and mutant mnemiopsin 2 by synchrotron-based Fourier-transform infrared spectroscopy.
Autorzy :
Astani EK; Life Science Group, Scientific Research Division, National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan; Department of Biochemistry, Faculty of Biological Sciences, Tarbiat Modares University, Tehran 14115-175, Iran.
Ersali S; Faculty of Chemistry and Chemical Engineering, Babeş-Bolyai University, Cluj-Napoca 400028, Romania.
Lee YC; Life Science Group, Scientific Research Division, National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan.
Lin PJ; Life Science Group, Scientific Research Division, National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan; Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu 30013, Taiwan.
Huang YC; Life Science Group, Scientific Research Division, National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan.
Huang PY; Life Science Group, Scientific Research Division, National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan.
Jafarian V; Department of Biology, Faculty of Science, University of Zanjan, Zanjan 45371-38791, Iran.
Hosseinkhani S; Department of Biochemistry, Faculty of Biological Sciences, Tarbiat Modares University, Tehran 14115-175, Iran. Electronic address: .
Chen CJ; Life Science Group, Scientific Research Division, National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan; Department of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan City 701, Taiwan; Department of Physics, National Tsing Hua University, Hsinchu 30043, Taiwan; Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 30010, Taiwan. Electronic address: .
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Źródło :
Biochimica et biophysica acta. Proteins and proteomics [Biochim Biophys Acta Proteins Proteom] 2020 Dec; Vol. 1868 (12), pp. 140528. Date of Electronic Publication: 2020 Aug 25.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Protein Structure, Secondary*
Spectroscopy, Fourier Transform Infrared*
Calcium/*chemistry
Luminescent Proteins/*chemistry
Hydrogen-Ion Concentration ; Luminescent Proteins/genetics ; Mutant Proteins ; Protein Binding ; Protein Conformation ; Protein Interaction Domains and Motifs ; Solutions ; Structure-Activity Relationship
Czasopismo naukowe
Tytuł :
Composition and in silico structural analysis of fibroin from liquid silk of non-mulberry silkworm Antheraea assamensis.
Autorzy :
Goswami A; Seri biotech Laboratory, Life Science Division, Institute of Advanced Study in Science and Technology, Vigyan Path, Paschim Boragaon, Assam 781035, India.
Goswami N; Bioinformatics Infrastructure Facility, College of Veterinary Science, Assam Agricultural University, Khanapara, Guwahati, Assam 781022, India.
Bhattacharya A; Bioinformatics Infrastucture Facility, Life Science Division, Institute of Advanced Study in Science and Technology, Vigyan Path, Paschim Boragaon, Assam 781035, India.
Borah P; Bioinformatics Infrastructure Facility, College of Veterinary Science, Assam Agricultural University, Khanapara, Guwahati, Assam 781022, India.
Devi D; Seri biotech Laboratory, Life Science Division, Institute of Advanced Study in Science and Technology, Vigyan Path, Paschim Boragaon, Assam 781035, India. Electronic address: .
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Źródło :
International journal of biological macromolecules [Int J Biol Macromol] 2020 Nov 15; Vol. 163, pp. 1947-1958. Date of Electronic Publication: 2020 Sep 08.
Typ publikacji :
Journal Article
MeSH Terms :
Protein Structure, Secondary*
Fibroins/*ultrastructure
Moths/*chemistry
Silk/*ultrastructure
Animals ; Bombyx/chemistry ; Calorimetry, Differential Scanning ; Circular Dichroism ; Computer Simulation ; Fibroins/chemistry ; Moths/ultrastructure ; Protein Conformation, alpha-Helical ; Silk/chemistry ; Spectroscopy, Fourier Transform Infrared ; X-Ray Diffraction
Czasopismo naukowe
Tytuł :
Irreversible alterations in the hemoglobin structure affect oxygen binding in human packed red blood cells.
Autorzy :
Szczesny-Malysiak E; Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland. Electronic address: .
Dybas J; Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland. Electronic address: .
Blat A; Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland; Faculty of Chemistry, Jagiellonian University, 2 Gronostajowa Str., 30-387 Krakow, Poland. Electronic address: .
Bulat K; Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland. Electronic address: .
Kus K; Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland. Electronic address: .
Kaczmarska M; Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland. Electronic address: .
Wajda A; Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland; Faculty of Materials Science and Ceramics, AGH University of Science and Technology, Mickiewicza 30, 30-059 Krakow, Poland. Electronic address: .
Malek K; Faculty of Chemistry, Jagiellonian University, 2 Gronostajowa Str., 30-387 Krakow, Poland. Electronic address: .
Chlopicki S; Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland; Chair of Pharmacology, Jagiellonian University Medical College, Grzegorzecka 16, 31-531 Krakow, Poland. Electronic address: .
Marzec KM; Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland. Electronic address: .
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Źródło :
Biochimica et biophysica acta. Molecular cell research [Biochim Biophys Acta Mol Cell Res] 2020 Nov; Vol. 1867 (11), pp. 118803. Date of Electronic Publication: 2020 Jul 30.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Protein Structure, Secondary*
Erythrocytes/*ultrastructure
Hemoglobins/*ultrastructure
Oxygen/*metabolism
Erythrocytes/metabolism ; Hemoglobins/metabolism ; Humans ; Models, Molecular ; Spectrum Analysis, Raman
Czasopismo naukowe
Tytuł :
The impact of codon choice on translation process in Saccharomyces cerevisiae: folding class, protein function and secondary structure.
Autorzy :
Santoni D; Institute for System Analysis and Computer Science 'Antonio Ruberti', National Research Council of Italy, Via dei Taurini 19, Rome 00185, Italy. Electronic address: .
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Źródło :
Journal of theoretical biology [J Theor Biol] 2021 Oct 07; Vol. 526, pp. 110806. Date of Electronic Publication: 2021 Jun 07.
Typ publikacji :
Journal Article
MeSH Terms :
Proteins*/genetics
Saccharomyces cerevisiae*/genetics
Codon/genetics ; Protein Biosynthesis/genetics ; Protein Folding ; Protein Structure, Secondary
Czasopismo naukowe
Tytuł :
Structural and biophysical characterization of the selenoprotein SelW1 from Chlamydomonas reinhardtii.
Autorzy :
Schmidt CL; Isotopes Laboratory, Department of Natural Sciences, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany.
Daberger J; Isotopes Laboratory, Department of Natural Sciences, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany.
Sobek M; Isotopes Laboratory, Department of Natural Sciences, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany.
Seeger K; Institute of Chemistry and Metabolomics, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany. Electronic address: .
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Źródło :
Biochimica et biophysica acta. Proteins and proteomics [Biochim Biophys Acta Proteins Proteom] 2021 Oct; Vol. 1869 (10), pp. 140685. Date of Electronic Publication: 2021 Jun 30.
Typ publikacji :
Journal Article
MeSH Terms :
Mutation*
Chlamydomonas reinhardtii/*metabolism
Selenoprotein W/*chemistry
Selenoprotein W/*metabolism
Algal Proteins/chemistry ; Algal Proteins/genetics ; Algal Proteins/metabolism ; Chlamydomonas reinhardtii/chemistry ; Chlamydomonas reinhardtii/genetics ; Disulfides/chemistry ; Models, Molecular ; Nuclear Magnetic Resonance, Biomolecular ; Oxidation-Reduction ; Protein Stability ; Protein Structure, Secondary ; Selenoprotein W/genetics ; Thermodynamics
Czasopismo naukowe
Tytuł :
N Backbone chemical shift assignments of the n-terminal and central intrinsically disordered domains of SARS-CoV-2 nucleoprotein.
Autorzy :
Guseva S; University Grenoble Alpes, CNRS, CEA, IBS, 38000, Grenoble, France.
Perez LM; University Grenoble Alpes, CNRS, CEA, IBS, 38000, Grenoble, France.
Camacho-Zarco A; University Grenoble Alpes, CNRS, CEA, IBS, 38000, Grenoble, France.
Bessa LM; University Grenoble Alpes, CNRS, CEA, IBS, 38000, Grenoble, France.
Salvi N; University Grenoble Alpes, CNRS, CEA, IBS, 38000, Grenoble, France.
Malki A; University Grenoble Alpes, CNRS, CEA, IBS, 38000, Grenoble, France.
Maurin D; University Grenoble Alpes, CNRS, CEA, IBS, 38000, Grenoble, France.
Blackledge M; University Grenoble Alpes, CNRS, CEA, IBS, 38000, Grenoble, France. .
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Źródło :
Biomolecular NMR assignments [Biomol NMR Assign] 2021 Oct; Vol. 15 (2), pp. 255-260. Date of Electronic Publication: 2021 Mar 17.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Nuclear Magnetic Resonance, Biomolecular*
SARS-CoV-2*
Nucleoproteins/*chemistry
Viral Proteins/*chemistry
Models, Molecular ; Protein Domains ; Protein Structure, Secondary
Czasopismo naukowe
Tytuł :
Backbone chemical shift spectral assignments of SARS coronavirus-2 non-structural protein nsp9.
Autorzy :
F Dudás E; Department of Basic and Clinical Neuroscience, Maurice Wohl Institute, UK-DRI at King's College London, 5 Cutcombe Rd, London, SE59RT, UK.
Puglisi R; Department of Basic and Clinical Neuroscience, Maurice Wohl Institute, UK-DRI at King's College London, 5 Cutcombe Rd, London, SE59RT, UK.
Korn SM; Institute for Molecular Biosciences, Johann Wolfgang Goethe-University Frankfurt, Max-von-Laue-Str. 9, 60438, Frankfurt/M, Germany.; Institute for Organic Chemistry and Chemical Biology, Center for Biomolecular Magnetic Resonance (BMRZ), Johann Wolfgang Goethe-University Frankfurt, Max-von-Laue-Str. 7, 60438, Frankfurt/M, Germany.
Alfano C; Fondazione Ri.Med, 90133, Palermo, Italy.
Bellone ML; Department of Medicine and Surgery, University of Salerno, Via Giovanni Paolo II, 84081, Baronissi, SA, Italy.
Piaz FD; Department of Medicine and Surgery, University of Salerno, Via Giovanni Paolo II, 84081, Baronissi, SA, Italy.
Kelly G; Francis Crick Institute, MRC Biomedical NMR Centre, 1 Midland Rd, London, NW1 1AT, UK.
Monaca E; Fondazione Ri.Med, 90133, Palermo, Italy.
Schlundt A; Institute for Molecular Biosciences, Johann Wolfgang Goethe-University Frankfurt, Max-von-Laue-Str. 9, 60438, Frankfurt/M, Germany.; Institute for Organic Chemistry and Chemical Biology, Center for Biomolecular Magnetic Resonance (BMRZ), Johann Wolfgang Goethe-University Frankfurt, Max-von-Laue-Str. 7, 60438, Frankfurt/M, Germany.
Schwalbe H; Institute for Molecular Biosciences, Johann Wolfgang Goethe-University Frankfurt, Max-von-Laue-Str. 9, 60438, Frankfurt/M, Germany.; Institute for Organic Chemistry and Chemical Biology, Center for Biomolecular Magnetic Resonance (BMRZ), Johann Wolfgang Goethe-University Frankfurt, Max-von-Laue-Str. 7, 60438, Frankfurt/M, Germany.
Pastore A; Department of Basic and Clinical Neuroscience, Maurice Wohl Institute, UK-DRI at King's College London, 5 Cutcombe Rd, London, SE59RT, UK. .
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Źródło :
Biomolecular NMR assignments [Biomol NMR Assign] 2021 Oct; Vol. 15 (2), pp. 235-241. Date of Electronic Publication: 2021 Mar 23.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Nuclear Magnetic Resonance, Biomolecular*
RNA-Binding Proteins/*chemistry
Viral Nonstructural Proteins/*chemistry
Hydrogen-Ion Concentration ; Models, Molecular ; Protein Structure, Secondary
Czasopismo naukowe
Tytuł :
Structural foundations of sticholysin functionality.
Autorzy :
Palacios-Ortega J; Departamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas, Universidad Complutense, Madrid, Spain; Biochemistry, Faculty of Science and Engineering, Åbo Akademi University, Turku, Finland. Electronic address: .
García-Linares S; Departamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas, Universidad Complutense, Madrid, Spain.
Rivera-de-Torre E; Department of Biochemistry and Biotechnology, Technical University of Denmark, Kongens Lyngby, Denmark.
Heras-Márquez D; Departamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas, Universidad Complutense, Madrid, Spain.
Gavilanes JG; Departamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas, Universidad Complutense, Madrid, Spain.
Slotte JP; Biochemistry, Faculty of Science and Engineering, Åbo Akademi University, Turku, Finland.
Martínez-Del-Pozo Á; Departamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas, Universidad Complutense, Madrid, Spain.
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Źródło :
Biochimica et biophysica acta. Proteins and proteomics [Biochim Biophys Acta Proteins Proteom] 2021 Oct; Vol. 1869 (10), pp. 140696. Date of Electronic Publication: 2021 Jul 08.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Pore Forming Cytotoxic Proteins/*chemistry
Pore Forming Cytotoxic Proteins/*metabolism
Sea Anemones/*metabolism
Amino Acid Motifs ; Animals ; Cell Membrane/metabolism ; Models, Molecular ; Protein Structure, Secondary ; Sea Anemones/chemistry ; Sphingomyelins/metabolism
Czasopismo naukowe
Tytuł :
Structures of MERS-CoV macro domain in aqueous solution with dynamics: Impacts of parallel tempering simulation techniques and CHARMM36m and AMBER99SB force field parameters.
Autorzy :
Akbayrak IY; Materials Sciences and Technologies, College of Sciences, Turkish-German University, Istanbul, Turkey.
Caglayan SI; Molecular Biotechnology, College of Sciences, Turkish-German University, Istanbul, Turkey.
Durdagi S; Department of Biophysics, School of Medicine, Bahcesehir University, Istanbul, Turkey.
Kurgan L; Department of Computer Science, Virginia Commonwealth University, Richmond, Virginia, USA.
Uversky VN; Department of Molecular Medicine, USF Health Byrd Alzheimer's Research Institute, Morsani College of Medicine, University of South Florida, Tampa, Florida, USA.; Laboratory of New Methods in Biology, Institute for Biological Instrumentation of the Russian Academy of Sciences, Federal Research Center 'Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences', Pushchino, Russia.
Ulver B; TUBITAK, Turkish Scientific and Technological Research Council, BİLGEM, Istanbul, Turkey.
Dervisoğlu H; TUBITAK, Turkish Scientific and Technological Research Council, BİLGEM, Istanbul, Turkey.
Haklidir M; TUBITAK, Turkish Scientific and Technological Research Council, BİLGEM, Istanbul, Turkey.
Hasekioglu O; TUBITAK, Turkish Scientific and Technological Research Council, BİLGEM, Istanbul, Turkey.
Coskuner-Weber O; Molecular Biotechnology, College of Sciences, Turkish-German University, Istanbul, Turkey.
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Źródło :
Proteins [Proteins] 2021 Oct; Vol. 89 (10), pp. 1289-1299. Date of Electronic Publication: 2021 May 26.
Typ publikacji :
Journal Article
MeSH Terms :
Molecular Dynamics Simulation*
Middle East Respiratory Syndrome Coronavirus/*chemistry
Middle East Respiratory Syndrome Coronavirus/*metabolism
Water/*chemistry
Water/*metabolism
Humans ; Protein Domains/physiology ; Protein Structure, Secondary ; Solutions
Czasopismo naukowe
Tytuł :
Structural basis for substrate specificity of the peroxisomal acyl-CoA hydrolase MpaH' involved in mycophenolic acid biosynthesis.
Autorzy :
You C; State Key Laboratory of Microbial Technology, Shandong University, Qingdao, China.
Li F; State Key Laboratory of Microbial Technology, Shandong University, Qingdao, China.
Zhang X; State Key Laboratory of Microbial Technology, Shandong University, Qingdao, China.
Ma L; State Key Laboratory of Microbial Technology, Shandong University, Qingdao, China.
Zhang YZ; State Key Laboratory of Microbial Technology, Shandong University, Qingdao, China.
Zhang W; State Key Laboratory of Microbial Technology, Shandong University, Qingdao, China.
Li S; State Key Laboratory of Microbial Technology, Shandong University, Qingdao, China.; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, China.
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Źródło :
The FEBS journal [FEBS J] 2021 Oct; Vol. 288 (19), pp. 5768-5780. Date of Electronic Publication: 2021 Apr 23.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Acyl Coenzyme A/*chemistry
Hydrolases/*ultrastructure
Mycophenolic Acid/*metabolism
Peroxisomes/*ultrastructure
Amino Acid Sequence/genetics ; Catalytic Domain/genetics ; Hydrolases/chemistry ; Hydrolases/genetics ; Mycophenolic Acid/chemistry ; Penicillium/genetics ; Penicillium/ultrastructure ; Peroxisomes/enzymology ; Protein Structure, Secondary/genetics ; Substrate Specificity/genetics
SCR Organism :
Penicillium brevicompactum
Czasopismo naukowe
Tytuł :
Study of structural changes of gluten proteins during bread dough mixing by Raman spectroscopy.
Autorzy :
Lancelot E; Oniris, CNRS, GEPEA, UMR 6144, Nantes F-44000, France.
Fontaine J; Oniris, CNRS, GEPEA, UMR 6144, Nantes F-44000, France; VMI, 70 rue Anne de Bretagne - PA Marches de Bretagne - 85600 Saint-Hilaire-de-Loulay, France.
Grua-Priol J; Oniris, CNRS, GEPEA, UMR 6144, Nantes F-44000, France.
Assaf A; Université de Nantes, CNRS, GEPEA, UMR 6144, 18 Boulevard Gaston Defferre, CS50020, 85035 La Roche-sur-Yon, France.
Thouand G; Université de Nantes, CNRS, GEPEA, UMR 6144, 18 Boulevard Gaston Defferre, CS50020, 85035 La Roche-sur-Yon, France.
Le-Bail A; Oniris, CNRS, GEPEA, UMR 6144, Nantes F-44000, France. Electronic address: .
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Źródło :
Food chemistry [Food Chem] 2021 Oct 01; Vol. 358, pp. 129916. Date of Electronic Publication: 2021 Apr 23.
Typ publikacji :
Journal Article
MeSH Terms :
Bread*
Disulfides/*chemistry
Glutens/*chemistry
Flour ; Phosphines/chemistry ; Protein Structure, Secondary ; Spectrum Analysis, Raman/methods ; Triticum ; Tryptophan/chemistry ; Tyrosine/chemistry
Czasopismo naukowe
Tytuł :
The method utilized to purify the SARS-CoV-2 N protein can affect its molecular properties.
Autorzy :
Tarczewska A; Department of Biochemistry, Molecular Biology and Biotechnology, Faculty of Chemistry, Wroclaw University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wroclaw, Poland. Electronic address: .
Kolonko-Adamska M; Department of Biochemistry, Molecular Biology and Biotechnology, Faculty of Chemistry, Wroclaw University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wroclaw, Poland. Electronic address: .
Zarębski M; Department of Cell Biophysics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 30-387 Cracow, Poland.
Dobrucki J; Department of Cell Biophysics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 30-387 Cracow, Poland.
Ożyhar A; Department of Biochemistry, Molecular Biology and Biotechnology, Faculty of Chemistry, Wroclaw University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wroclaw, Poland.
Greb-Markiewicz B; Department of Biochemistry, Molecular Biology and Biotechnology, Faculty of Chemistry, Wroclaw University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wroclaw, Poland. Electronic address: .
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Źródło :
International journal of biological macromolecules [Int J Biol Macromol] 2021 Oct 01; Vol. 188, pp. 391-403. Date of Electronic Publication: 2021 Aug 06.
Typ publikacji :
Journal Article
MeSH Terms :
Coronavirus Nucleocapsid Proteins/*chemistry
Coronavirus Nucleocapsid Proteins/*isolation & purification
Liquid-Liquid Extraction/*methods
SARS-CoV-2/*metabolism
Coronavirus Nucleocapsid Proteins/metabolism ; Intrinsically Disordered Proteins/chemistry ; Intrinsically Disordered Proteins/isolation & purification ; Intrinsically Disordered Proteins/metabolism ; Nucleic Acids/chemistry ; Nucleic Acids/metabolism ; Protein Aggregates ; Protein Structure, Quaternary ; Protein Structure, Secondary
Czasopismo naukowe
Tytuł :
Effect of phosphate salts on the gluten network structure and quality of wheat noodles.
Autorzy :
Sun J; State Key Laboratory of Food Science and Technology, School of Food Science and Technology, National Engineering Research Center for Functional Food, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, China.
Chen M; State Key Laboratory of Food Science and Technology, School of Food Science and Technology, National Engineering Research Center for Functional Food, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, China.
Hou X; State Key Laboratory of Food Science and Technology, School of Food Science and Technology, National Engineering Research Center for Functional Food, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, China.
Li T; Department of Food Science and Engineering, College of Light Industry and Food Engineering, Nanjing Forestry University, 159 Longpan Road, Nanjing 210037, China.
Qian H; State Key Laboratory of Food Science and Technology, School of Food Science and Technology, National Engineering Research Center for Functional Food, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, China.
Zhang H; State Key Laboratory of Food Science and Technology, School of Food Science and Technology, National Engineering Research Center for Functional Food, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, China.
Li Y; State Key Laboratory of Food Science and Technology, School of Food Science and Technology, National Engineering Research Center for Functional Food, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, China.
Qi X; State Key Laboratory of Food Science and Technology, School of Food Science and Technology, National Engineering Research Center for Functional Food, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, China.
Wang L; State Key Laboratory of Food Science and Technology, School of Food Science and Technology, National Engineering Research Center for Functional Food, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, China. Electronic address: .
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Źródło :
Food chemistry [Food Chem] 2021 Oct 01; Vol. 358, pp. 129895. Date of Electronic Publication: 2021 Apr 20.
Typ publikacji :
Journal Article
MeSH Terms :
Flour*/analysis
Triticum*/chemistry
Glutens/*chemistry
Phosphates/*chemistry
Disulfides/chemistry ; Food Quality ; Protein Structure, Secondary ; Rheology ; Salts/chemistry ; Water
Czasopismo naukowe

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