High-throughput sequencing of insect specimens with sub-optimal DNA preservation using a practical, plate-based Illumina-compatible Tn5 transposase library preparation method.
Autorzy:
Cobb L; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway. de Muinck E; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway. Kollias S; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway. Skage M; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway. Gilfillan GD; Department of Medical Genetics, Oslo University Hospital Ullevål and University of Oslo, Oslo, Norway. Sydenham MAK; Norwegian Institute for Nature Research (NINA), Oslo, Norway. QiaoSW; Department of Immunology, Institute of Clinical Medicine, University of Oslo, Oslo, Norway. Star B; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
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Źródło:
PloS one [PLoS One] 2024 Mar 22; Vol. 19 (3), pp. e0300865. Date of Electronic Publication: 2024 Mar 22 (Print Publication: 2024).
Lymphocyte subsets in Atlantic cod (Gadus morhua) interrogated by single-cell sequencing.
Autorzy:
Guslund NC; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences and the Department of Immunology, University of Oslo, Oslo, Norway. . Krabberød AK; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences and the Department of Immunology, University of Oslo, Oslo, Norway.; Section for Genetics and Evolutionary Biology, Department of Biosciences and the Department of Immunology, University of Oslo, Oslo, Norway. Nørstebø SF; Department of Paraclinical Sciences, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway. Solbakken MH; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences and the Department of Immunology, University of Oslo, Oslo, Norway. Jakobsen KS; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences and the Department of Immunology, University of Oslo, Oslo, Norway. Johansen FE; Section for Physiology and Cell Biology, Department of Biosciences, University of Oslo, Oslo, Norway. QiaoSW; Department of Immunology, Institute of Clinical Medicine, University of Oslo, Oslo, Norway. s.w.qiao@medisin.uio.no.
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Źródło:
Communications biology [Commun Biol] 2022 Jul 11; Vol. 5 (1), pp. 689. Date of Electronic Publication: 2022 Jul 11.
TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences.
Autorzy:
Dahal-Koirala S; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, 0372, Norway.; Department of Immunology, University of Oslo and Oslo University Hospital-Rikshospitalet, Oslo, 0372, Norway. Balaban G; Biomedical Informatics, Department of Informatics, University of Oslo, 0373, Oslo, Norway.; Department of Computational Physiology, Simula Research Laboratory, 1364, Fornebu, Norway.; PharmaTox Strategic Research Initiative, Faculty of Mathematics and Natural Sciences, University of Oslo, 0373, Oslo, Norway. Neumann RS; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, 0372, Norway. Scheffer L; Biomedical Informatics, Department of Informatics, University of Oslo, 0373, Oslo, Norway. Lundin KEA; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, 0372, Norway.; Department of Gastroenterology, Oslo University Hospital-Rikshospitalet, 0372, Oslo, Norway. Greiff V; Department of Immunology, University of Oslo and Oslo University Hospital-Rikshospitalet, Oslo, 0372, Norway. Sollid LM; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, 0372, Norway.; Department of Immunology, University of Oslo and Oslo University Hospital-Rikshospitalet, Oslo, 0372, Norway. QiaoSW; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, 0372, Norway.; Department of Immunology, University of Oslo and Oslo University Hospital-Rikshospitalet, Oslo, 0372, Norway. Sandve GK; Biomedical Informatics, Department of Informatics, University of Oslo, 0373, Oslo, Norway.; PharmaTox Strategic Research Initiative, Faculty of Mathematics and Natural Sciences, University of Oslo, 0373, Oslo, Norway.
Differential expression profile of gluten-specific T cells identified by single-cell RNA-seq.
Autorzy:
Yao Y; Department of Immunology, University of Oslo, Oslo, Norway.; Centre for Immune Regulation, University of Oslo, Oslo, Norway.; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway. Wyrozżemski Ł; Department of Immunology, University of Oslo, Oslo, Norway.; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway. Lundin KEA; Department of Immunology, University of Oslo, Oslo, Norway.; Centre for Immune Regulation, University of Oslo, Oslo, Norway.; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway. Sandve GK; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.; Department of Informatics, University of Oslo, Oslo, Norway. QiaoSW; Department of Immunology, University of Oslo, Oslo, Norway.; Centre for Immune Regulation, University of Oslo, Oslo, Norway.; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.
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Źródło:
PloS one [PLoS One] 2021 Oct 07; Vol. 16 (10), pp. e0258029. Date of Electronic Publication: 2021 Oct 07 (Print Publication: 2021).
Immunobiology and conflicting roles of the human CD161 receptor in T cells.
Autorzy:
Wyrożemski Ł; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.; Department of Immunology, University of Oslo, Oslo, Norway. QiaoSW; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.; Department of Immunology, University of Oslo, Oslo, Norway.; Department of Immunology, Oslo University Hospital, Oslo, Norway.
C-type lectin-like CD161 is not a co-signalling receptor in gluten-reactive CD4 + T cells.
Autorzy:
Wyrożemski Ł; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.; Department of Immunology, University of Oslo, Oslo, Norway. Sollid LM; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.; Department of Immunology, University of Oslo, Oslo, Norway.; Department of Immunology, Oslo University Hospital, Oslo, Norway. QiaoSW; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.; Department of Immunology, University of Oslo, Oslo, Norway.; Department of Immunology, Oslo University Hospital, Oslo, Norway.
Potential impact of celiac disease genetic risk factors on T cell receptor signaling in gluten-specific CD4+ T cells.
Autorzy:
Bakker OB; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands. Ramírez-Sánchez AD; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands. Borek ZA; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands. de Klein N; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands. Li Y; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands. Modderman R; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands. Kooy-Winkelaar Y; Department of Immunohematology and Blood Transfusion, Leiden University Medical Center, Leiden, The Netherlands. Johannesen MK; K.G. Jebsen Coeliac Disease Research Centre, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.; Department of Immunology, Oslo University Hospital, Rikshospitalet, Oslo, Norway. Matarese F; Department of Molecular Biology, Nijmegen Centre for Molecular Life Sciences, Radboud University, Nijmegen, The Netherlands. Martens JHA; Department of Molecular Biology, Nijmegen Centre for Molecular Life Sciences, Radboud University, Nijmegen, The Netherlands. Kumar V; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.; Department of Internal Medicine and Radboud Center for Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands.; Nitte (Deemed to be University), Division of Infectious Diseases, Nitte University Centre for Science Education and Research (NUCSER), Paneer Campus, Deralakatte, Mangaluru, 575018, India. van Bergen J; Department of Immunohematology and Blood Transfusion, Leiden University Medical Center, Leiden, The Netherlands. QiaoSW; K.G. Jebsen Coeliac Disease Research Centre, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.; Department of Immunology, Oslo University Hospital, Rikshospitalet, Oslo, Norway. Lundin KEA; K.G. Jebsen Coeliac Disease Research Centre, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.; Department of Gastroenterology, Oslo University Hospital, Rikshospitalet, Oslo, Norway. Sollid LM; K.G. Jebsen Coeliac Disease Research Centre, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.; Department of Immunology, Oslo University Hospital, Rikshospitalet, Oslo, Norway. Koning F; Department of Immunohematology and Blood Transfusion, Leiden University Medical Center, Leiden, The Netherlands. Wijmenga C; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.; K.G. Jebsen Coeliac Disease Research Centre, Institute of Clinical Medicine, University of Oslo, Oslo, Norway. Withoff S; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands. Jonkers IH; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands. .
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Źródło:
Scientific reports [Sci Rep] 2021 Apr 29; Vol. 11 (1), pp. 9252. Date of Electronic Publication: 2021 Apr 29.
Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments.
Autorzy:
Yao Y; Department of Immunology, Centre for Immune Regulation, University of Oslo, Oslo, Norway. Zia A; Department of Immunology, Centre for Immune Regulation, University of Oslo, Oslo, Norway. Wyrożemski Ł; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway. Lindeman I; Department of Immunology, Centre for Immune Regulation, University of Oslo, Oslo, Norway.; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway. Sandve GK; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.; Department of Informatics, University of Oslo, Oslo, Norway. QiaoSW; Department of Immunology, Centre for Immune Regulation, University of Oslo, Oslo, Norway.; K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.
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Źródło:
PloS one [PLoS One] 2018 Dec 05; Vol. 13 (12), pp. e0208484. Date of Electronic Publication: 2018 Dec 05 (Print Publication: 2018).
QiaoSW; Department of Immunology and Centre for Immune Regulation, University of Oslo, Oslo University Hospital-Rikshospitalet, 0027, Oslo, Norway. s.w.qiao@medisin.uio.no Iversen R Ráki M Sollid LM
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Źródło:
Seminars in immunopathology [Semin Immunopathol] 2012 Jul; Vol. 34 (4), pp. 523-40. Date of Electronic Publication: 2012 Apr 26.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Review
High abundance of plasma cells secreting transglutaminase 2-specific IgA autoantibodies with limited somatic hypermutation in celiac disease intestinal lesions.
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