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Wyszukujesz frazę ""RNA‐seq"" wg kryterium: Temat


Tytuł:
Linking genome structures to functions by simultaneous single-cell Hi-C and RNA-seq.
Autorzy:
Liu Z; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Chen Y; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Xia Q; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Liu M; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Xu H; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Chi Y; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Deng Y; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Xing D; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
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Źródło:
Science (New York, N.Y.) [Science] 2023 Jun 09; Vol. 380 (6649), pp. 1070-1076. Date of Electronic Publication: 2023 Jun 08.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*/chemistry
Chromatin*/genetics
Genome*
RNA-Seq*/methods
Single-Cell Analysis*/methods
Embryonic Development*/genetics
Animals ; Mice ; Embryo, Mammalian ; Gene Expression Regulation, Developmental ; Cell Lineage/genetics
Czasopismo naukowe
Tytuł:
Machine learning on alignment features for parent-of-origin classification of simulated hybrid RNA-seq.
Autorzy:
Miller JR; Department of Computer Science, Mathematics, Engineering, Shepherd University, Shepherdstown, WV, USA. .; EVOGENE, Department of Biosciences, University of Oslo, Oslo, Norway. .; Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, USA. .
Adjeroh DA; Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 12; Vol. 25 (1), pp. 109. Date of Electronic Publication: 2024 Mar 12.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Transcriptome*
RNA-Seq ; Sequence Analysis, RNA/methods ; Machine Learning
Czasopismo naukowe
Tytuł:
Genome-wide analysis of acid tolerance genes of Enterococcus faecalis with RNA-seq and Tn-seq.
Autorzy:
Chen Z; Department of Endodontics and Operative Dentistry, Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, China.; National Clinical Research Center for Oral Diseases, Shanghai, China.; Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, Shanghai, China.
Niu C; Department of Endodontics and Operative Dentistry, Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, China.; National Clinical Research Center for Oral Diseases, Shanghai, China.; Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, Shanghai, China.
Wei L; Department of Endodontics and Operative Dentistry, Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, China.; Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, Shanghai, China.; Nucleic acid drug Research and Development Institute, CSPC, Shanghai, China.
Huang Z; Department of Endodontics and Operative Dentistry, Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, China.; National Clinical Research Center for Oral Diseases, Shanghai, China.; Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, Shanghai, China.
Ran S; Department of Endodontics and Operative Dentistry, Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, China. .; National Clinical Research Center for Oral Diseases, Shanghai, China. .; Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, Shanghai, China. .
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Źródło:
BMC genomics [BMC Genomics] 2024 Mar 08; Vol. 25 (1), pp. 261. Date of Electronic Publication: 2024 Mar 08.
Typ publikacji:
Journal Article
MeSH Terms:
Enterococcus faecalis*/genetics
Gene Expression Profiling*
RNA-Seq ; Genome
Czasopismo naukowe
Tytuł:
Introgressions lead to reference bias in wheat RNA-seq analysis.
Autorzy:
Coombes B; Earlham Institute, Norwich, Norfolk, NR4 7UZ, UK. .
Lux T; Plant Genome and Systems Biology, Helmholtz Zentrum München, Neuherberg, Germany.
Akhunov E; Department of Plant Pathology, Kansas State University, Manhattan, KS, USA.
Hall A; Earlham Institute, Norwich, Norfolk, NR4 7UZ, UK. .
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Źródło:
BMC biology [BMC Biol] 2024 Mar 07; Vol. 22 (1), pp. 56. Date of Electronic Publication: 2024 Mar 07.
Typ publikacji:
Journal Article
MeSH Terms:
Triticum*/genetics
Transcriptome*
RNA-Seq ; Genomics ; Polyploidy
Czasopismo naukowe
Tytuł:
Screening and identification of lncRNAs in preadipocyte differentiation in sheep.
Autorzy:
Hao Z; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Jin X; Academic Animal & Veterinary Science, Qinghai University, Xining, China.
Hickford JGH; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.; Gene-Marker Laboratory, Faculty of Agriculture and Life Science, Lincoln University, Lincoln, 7647, New Zealand.
Zhou H; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.; Gene-Marker Laboratory, Faculty of Agriculture and Life Science, Lincoln University, Lincoln, 7647, New Zealand.
Wang L; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Wang J; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China. .
Luo Y; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Hu J; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Liu X; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Li S; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Li M; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Shi B; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Ren C; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
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Źródło:
Scientific reports [Sci Rep] 2024 Mar 04; Vol. 14 (1), pp. 5260. Date of Electronic Publication: 2024 Mar 04.
Typ publikacji:
Journal Article
MeSH Terms:
RNA, Long Noncoding*/genetics
Animals ; Sheep/genetics ; Phosphatidylinositol 3-Kinases ; Mitogen-Activated Protein Kinases ; Phosphatidylinositol 3-Kinase ; RNA-Seq
Czasopismo naukowe
Tytuł:
Application of bulk segregant RNA-Seq (BSR-Seq) and allele-specific primers to study soybean powdery mildew resistance.
Autorzy:
Huang CC; Master Program for Plant Medicine, National Taiwan University, Taipei, 106319, Taiwan.
Lin CH; Taoyuan District Agricultural Research and Extension Station. Ministry of Agriculture, Taoyuan, 327005, Taiwan.
Lin YC; Department of Plant Pathology and Microbiology, National Taiwan University, Taipei, 106319, Taiwan.; Department of Ecology and Evolutionary Biology, The University of Michigan, Ann Arbor, MI, 48109, USA.
Chang HX; Master Program for Plant Medicine, National Taiwan University, Taipei, 106319, Taiwan. .; Department of Plant Pathology and Microbiology, National Taiwan University, Taipei, 106319, Taiwan. .; Center of Biotechnology, National Taiwan University, Taipei, 106319, Taiwan. .
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Źródło:
BMC plant biology [BMC Plant Biol] 2024 Mar 01; Vol. 24 (1), pp. 155. Date of Electronic Publication: 2024 Mar 01.
Typ publikacji:
Journal Article
MeSH Terms:
Glycine max*/genetics
Disease Resistance*/genetics
RNA-Seq ; Alleles ; Chromosome Mapping/methods ; Phenotype ; Erysiphe ; Plant Diseases/genetics
Czasopismo naukowe
Tytuł:
Alternative polyadenylation profiles of susceptible and resistant rice (Oryza sativa L.) in response to bacterial leaf blight using RNA-seq.
Autorzy:
Liu S; Key Laboratory of Crop Physiology, Ecology, and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, 330045, China.
Luo S; Key Laboratory of Crop Physiology, Ecology, and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, 330045, China.
Yang D; Institute of Rice, Fujian Academy of Agricultural Sciences, Fuzhou, China.
Huang J; Key Laboratory of Crop Physiology, Ecology, and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, 330045, China.
Jiang X; Key Laboratory of Crop Physiology, Ecology, and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, 330045, China.
Yu S; Key Laboratory of Crop Physiology, Ecology, and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, 330045, China.
Fu J; Key Laboratory of Crop Physiology, Ecology, and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, 330045, China.
Zhou D; Key Laboratory of Crop Physiology, Ecology, and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, 330045, China.
Chen X; Key Laboratory of Crop Physiology, Ecology, and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, 330045, China.
He H; Key Laboratory of Crop Physiology, Ecology, and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, 330045, China. .
Fu H; Key Laboratory of Crop Physiology, Ecology, and Genetic Breeding, Ministry of Education, Jiangxi Agricultural University, Nanchang, 330045, China. .
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Źródło:
BMC plant biology [BMC Plant Biol] 2024 Feb 28; Vol. 24 (1), pp. 145. Date of Electronic Publication: 2024 Feb 28.
Typ publikacji:
Journal Article
MeSH Terms:
Oryza*/metabolism
Xanthomonas*/physiology
RNA-Seq ; Polyadenylation/genetics ; Disease Resistance/genetics ; Stress, Physiological ; Plant Diseases/microbiology ; Gene Expression Regulation, Plant
Czasopismo naukowe
Tytuł:
ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs.
Autorzy:
Westrin KJ; Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, 171 65, Solna, Sweden.
Kretzschmar WW; Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, 171 65, Solna, Sweden.; Department of Medicine Huddinge, Center for Hematology and Regenerative Medicine (HERM), Karolinska Institute, 141 52, Flemingsberg, Sweden.
Emanuelsson O; Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, 171 65, Solna, Sweden. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Feb 01; Vol. 25 (1), pp. 54. Date of Electronic Publication: 2024 Feb 01.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
High-Throughput Nucleotide Sequencing*/methods
Sequence Analysis ; RNA-Seq ; Sequence Analysis, RNA ; Protein Isoforms/genetics
Czasopismo naukowe
Tytuł:
Transcriptome analysis of long non-coding RNA and mRNA Profiles in VSV-infected BHK-21 Cells.
Autorzy:
Han W; Hebei Key Laboratory of Preventive Veterinary Medicine, College of Animal Science and Technology, Hebei Normal University of Science &Technology, Qinhuangdao, 066004, China.; State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730000, China.
Fei X; Center of Gansu Provincial Vaccine Engineering Research, Lanzhou Institute of Biological Products, Lanzhou, 730046, Gansu Province, China.
Yang F; State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730000, China.
Sun X; State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730000, China.
Yang J; State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730000, China.
Qiu J; State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730000, China.
Zhang L; State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730000, China.
Zhang W; State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730000, China.
Chen G; State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730000, China.
Han W; Shandong Zhuohua Biotechnology Co., Ltd, Liaocheng, 252126, China.
He X; Shandong Zhuohua Biotechnology Co., Ltd, Liaocheng, 252126, China.
Liu Y; Hebei Key Laboratory of Preventive Veterinary Medicine, College of Animal Science and Technology, Hebei Normal University of Science &Technology, Qinhuangdao, 066004, China. .
Li W; State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, 730000, China. .
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Źródło:
BMC genomics [BMC Genomics] 2024 Jan 15; Vol. 25 (1), pp. 62. Date of Electronic Publication: 2024 Jan 15.
Typ publikacji:
Journal Article
MeSH Terms:
RNA, Long Noncoding*/genetics
Vaccines*
Animals ; Humans ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Gene Expression Profiling ; RNA-Seq ; Transcriptome
Czasopismo naukowe
Tytuł:
Genome-wide systematic survey and analysis of the RNA helicase gene family and their response to abiotic stress in sweetpotato.
Autorzy:
Mu F; Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Science, Jiangsu Normal University, Xuzhou, 221116, China.
Zheng H; Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Science, Jiangsu Normal University, Xuzhou, 221116, China.
Zhao Q; Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Science, Jiangsu Normal University, Xuzhou, 221116, China.
Zhu M; Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Science, Jiangsu Normal University, Xuzhou, 221116, China.
Dong T; Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Science, Jiangsu Normal University, Xuzhou, 221116, China.
Kai L; The Key Laboratory of Biotechnology for Medicinal Plants of Jiangsu Province, School of Life Sciences, Jiangsu Normal University, Xuzhou, 221116, China.
Li Z; Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Science, Jiangsu Normal University, Xuzhou, 221116, China. .
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Źródło:
BMC plant biology [BMC Plant Biol] 2024 Mar 16; Vol. 24 (1), pp. 193. Date of Electronic Publication: 2024 Mar 16.
Typ publikacji:
Journal Article
MeSH Terms:
Stress, Physiological*/genetics
Ipomoea batatas*/metabolism
Cold-Shock Response/genetics ; RNA-Seq ; Sodium Chloride/metabolism ; RNA Helicases/genetics ; RNA Helicases/metabolism ; Gene Expression Regulation, Plant ; Phylogeny
Czasopismo naukowe
Tytuł:
RNA-seq analysis reveals narrow differential gene expression in MEP and MVA pathways responsible for phytochemical divergence in extreme genotypes of Thymus daenensis Celak.
Autorzy:
Ahmadi H; Biotechnology and Breeding Research Group for Medicinal Plants, Department of Horticultural Science & Landscape Engineering, Faculty of Agricultural Science, University of Tehran, Karaj, Iran.; Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland.
Fatahi R; Biotechnology and Breeding Research Group for Medicinal Plants, Department of Horticultural Science & Landscape Engineering, Faculty of Agricultural Science, University of Tehran, Karaj, Iran. .
Zamani Z; Biotechnology and Breeding Research Group for Medicinal Plants, Department of Horticultural Science & Landscape Engineering, Faculty of Agricultural Science, University of Tehran, Karaj, Iran.
Shokrpour M; Biotechnology and Breeding Research Group for Medicinal Plants, Department of Horticultural Science & Landscape Engineering, Faculty of Agricultural Science, University of Tehran, Karaj, Iran.
Sheikh-Assadi M; Biotechnology and Breeding Research Group for Medicinal Plants, Department of Horticultural Science & Landscape Engineering, Faculty of Agricultural Science, University of Tehran, Karaj, Iran.
Poczai P; Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland. .
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Źródło:
BMC genomics [BMC Genomics] 2024 Mar 04; Vol. 25 (1), pp. 237. Date of Electronic Publication: 2024 Mar 04.
Typ publikacji:
Journal Article
MeSH Terms:
Mevalonic Acid*
Oils, Volatile*
Cymenes*
Humans ; Phosphates ; Thymol ; Genotype ; Phytochemicals ; RNA-Seq ; Terpenes ; Gene Expression
Czasopismo naukowe
Tytuł:
A clustering procedure for three-way RNA sequencing data using data transformations and matrix-variate Gaussian mixture models.
Autorzy:
Scharl T; Institute of Statistics, University of Natural Resources and Life Sciences, Vienna, Austria. .
Grün B; Institute for Statistics and Mathematics, Vienna University of Economics and Business, Vienna, Austria.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 01; Vol. 25 (1), pp. 90. Date of Electronic Publication: 2024 Mar 01.
Typ publikacji:
Journal Article
MeSH Terms:
RNA*/genetics
Sequence Analysis, RNA/methods ; RNA-Seq ; Base Sequence ; Cluster Analysis
Czasopismo naukowe
Tytuł:
Common mitochondrial deletions in RNA-Seq: evaluation of bulk, single-cell, and spatial transcriptomic datasets.
Autorzy:
Omidsalar AA; Department of Translational Genomics, Keck School of Medicine of USC, Los Angeles, CA, USA.
McCullough CG; Department of Translational Genomics, Keck School of Medicine of USC, Los Angeles, CA, USA.
Xu L; Department of Translational Genomics, Keck School of Medicine of USC, Los Angeles, CA, USA.
Boedijono S; Department of Translational Genomics, Keck School of Medicine of USC, Los Angeles, CA, USA.
Gerke D; Department of Translational Genomics, Keck School of Medicine of USC, Los Angeles, CA, USA.
Webb MG; Department of Translational Genomics, Keck School of Medicine of USC, Los Angeles, CA, USA.
Manojlovic Z; Department of Translational Genomics, Keck School of Medicine of USC, Los Angeles, CA, USA.
Sequeira A; Department of Psychiatry and Human Behavior, University of California - Irvine (UCI) School of Medicine, Irvine, CA, USA.
Lew MF; Department of Neurology, Keck School of Medicine of USC, Los Angeles, CA, USA.
Santorelli M; Department of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine of USC, Los Angeles, CA, USA.
Serrano GE; Banner Sun Health Research Institute (BSHRI), Sun City, AZ, USA.
Beach TG; Banner Sun Health Research Institute (BSHRI), Sun City, AZ, USA.
Limon A; Mitchell Center for Neurodegenerative Diseases, Department of Neurology, School of Medicine, University of Texas Medical Branch, Galveston, TX, USA.
Vawter MP; Department of Psychiatry and Human Behavior, University of California - Irvine (UCI) School of Medicine, Irvine, CA, USA.
Hjelm BE; Department of Translational Genomics, Keck School of Medicine of USC, Los Angeles, CA, USA. .
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Źródło:
Communications biology [Commun Biol] 2024 Feb 17; Vol. 7 (1), pp. 200. Date of Electronic Publication: 2024 Feb 17.
Typ publikacji:
Journal Article
MeSH Terms:
Brain*/metabolism
Substantia Nigra*/metabolism
Humans ; RNA-Seq ; DNA, Mitochondrial/genetics ; DNA, Mitochondrial/metabolism ; Mitochondria/genetics
Czasopismo naukowe
Tytuł:
Integration analysis of ATAC-seq and RNA-seq provides insight into fatty acid biosynthesis in Schizochytrium limacinum under nitrogen limitation stress.
Autorzy:
Chen D; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China.
Chen J; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China.
Dai R; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China.
Zheng X; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China.
Han Y; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China.
Chen Y; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China.
Xue T; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China. .
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Źródło:
BMC genomics [BMC Genomics] 2024 Feb 05; Vol. 25 (1), pp. 141. Date of Electronic Publication: 2024 Feb 05.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin Immunoprecipitation Sequencing*
Stramenopiles*/genetics
Stramenopiles*/metabolism
Humans ; RNA-Seq ; Nitrogen/metabolism ; Fatty Acids/metabolism ; Chromatin/metabolism ; Docosahexaenoic Acids
Czasopismo naukowe
Tytuł:
Mapping Expression Quantitative Trait Loci Targeting Candidate Genes for Pregnancy in Beef Cows.
Autorzy:
Diniz WJS; Department of Animal Sciences, Auburn University, Auburn, AL 36849, USA.
Afonso J; Embrapa Pecuária Sudeste, Rodovia Washington Luiz, Km 234, s/n, Fazenda Canchim, São Carlos 13560-970, SP, Brazil.
Kertz NC; Department of Animal Sciences, Auburn University, Auburn, AL 36849, USA.
Dyce PW; Department of Animal Sciences, Auburn University, Auburn, AL 36849, USA.
Banerjee P; Department of Animal Sciences, Auburn University, Auburn, AL 36849, USA.
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Źródło:
Biomolecules [Biomolecules] 2024 Jan 26; Vol. 14 (2). Date of Electronic Publication: 2024 Jan 26.
Typ publikacji:
Journal Article
MeSH Terms:
Quantitative Trait Loci*
Gene Expression Regulation*
Female ; Cattle ; Animals ; Pregnancy ; Gene Expression Profiling ; Phenotype ; RNA-Seq ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Tytuł:
Characterization and gene expression analysis reveal universal stress proteins respond to abiotic stress in Gossypium hirsutum.
Autorzy:
Li Y; College of Ecology, Lishui University, Lishui, 323000, China.
Zheng A; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
Li Z; College of Mathematics and Physics, Henan University of Urban Construction, Pingdingshan, 467000, China.
Wang H; Shijiazhuang Academy of Agriculture and Forestry Sciences, Shijiazhuang, 050041, China.
Wang J; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
Dong Z; Shijiazhuang Academy of Agriculture and Forestry Sciences, Shijiazhuang, 050041, China.
Yao L; College of Ecology, Lishui University, Lishui, 323000, China. .
Han X; Shijiazhuang Academy of Agriculture and Forestry Sciences, Shijiazhuang, 050041, China. .
Wei F; Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Zhengzhou University, Zhengzhou, 450001, China. .
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Źródło:
BMC genomics [BMC Genomics] 2024 Jan 23; Vol. 25 (1), pp. 98. Date of Electronic Publication: 2024 Jan 23.
Typ publikacji:
Journal Article
MeSH Terms:
Gossypium*
Plant Breeding*
Heat-Shock Proteins ; Gene Expression Profiling ; RNA-Seq
Czasopismo naukowe
Tytuł:
Full-length transcriptome and RNA-Seq analyses reveal the resistance mechanism of sesame in response to Corynespora cassiicola.
Autorzy:
Jia M; Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China.; Key Laboratory of Specific Oilseed Crops Genomics of Henan Province, Henan Sesame Research Center, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China.
Ni Y; Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China. .; Key Laboratory of Specific Oilseed Crops Genomics of Henan Province, Henan Sesame Research Center, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China. .
Zhao H; Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China.; Key Laboratory of Specific Oilseed Crops Genomics of Henan Province, Henan Sesame Research Center, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China.
Liu X; Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China.
Yan W; Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China.
Zhao X; Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China.
Wang J; Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China.
He B; Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China.
Liu H; Key Laboratory of IPM of Pests on Crop (Southern North China), Ministry of Agriculture, Key Laboratory of Crop Pest Control of Henan, Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China. .; Key Laboratory of Specific Oilseed Crops Genomics of Henan Province, Henan Sesame Research Center, Henan Academy of Agricultural Sciences, Zhengzhou, Henan, 450002, China. .
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Źródło:
BMC plant biology [BMC Plant Biol] 2024 Jan 23; Vol. 24 (1), pp. 64. Date of Electronic Publication: 2024 Jan 23.
Typ publikacji:
Journal Article
MeSH Terms:
Sesamum*
Ascomycota*
Disease Resistance ; RNA-Seq ; Transcriptome ; Plant Growth Regulators
SCR Organism:
Corynespora cassiicola
Czasopismo naukowe
Tytuł:
Responsive Alternative Splicing Events of Opisthopappus Species against Salt Stress.
Autorzy:
Han M; School of Life Science, Shanxi Normal University, Taiyuan 030031, China.
Niu M; School of Life Science, Shanxi Normal University, Taiyuan 030031, China.
Gao T; School of Life Science, Shanxi Normal University, Taiyuan 030031, China.
Shen Y; School of Life Science, Shanxi Normal University, Taiyuan 030031, China.
Zhou X; School of Life Science, Shanxi Normal University, Taiyuan 030031, China.
Zhang Y; School of Life Science, Shanxi Normal University, Taiyuan 030031, China.
Liu L; School of Life Science, Shanxi Normal University, Taiyuan 030031, China.
Chai M; School of Life Science, Shanxi Normal University, Taiyuan 030031, China.
Sun G; Department of Botany, Saint Mary's University, Halifax, NS B3H 3C3, Canada.
Wang Y; School of Life Science, Shanxi Normal University, Taiyuan 030031, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Jan 19; Vol. 25 (2). Date of Electronic Publication: 2024 Jan 19.
Typ publikacji:
Journal Article
MeSH Terms:
Alternative Splicing*
Salt Stress*/genetics
RNA-Seq ; Salt Tolerance/genetics ; Plant Growth Regulators ; Gene Expression Regulation, Plant ; Transcriptome ; Gene Expression Profiling
Czasopismo naukowe
Tytuł:
Internal and external normalization of nascent RNA sequencing run-on experiments.
Autorzy:
Maas ZL; Department of Computer Science, University of Colorado, Boulder, USA.; BioFrontiers Institute, University of Colorado, Boulder, USA.
Dowell RD; Department of Computer Science, University of Colorado, Boulder, USA. .; BioFrontiers Institute, University of Colorado, Boulder, USA. .; Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Jan 12; Vol. 25 (1), pp. 19. Date of Electronic Publication: 2024 Jan 12.
Typ publikacji:
Journal Article
MeSH Terms:
RNA*/genetics
Bayes Theorem ; Sequence Analysis, RNA ; RNA-Seq
Czasopismo naukowe
Tytuł:
Discovery of circulating miRNAs as biomarkers of chronic Chagas heart disease via a small RNA-Seq approach.
Autorzy:
Villar SR; Instituto de Inmunología Clínica y Experimental de Rosario (IDICER-CONICET-UNR), Rosario, Argentina.
Herreros-Cabello A; Departamento de Biología Molecular, Universidad Autónoma de Madrid (UAM), 28049, Madrid, Spain.; Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Madrid, Spain.
Callejas-Hernández F; Departamento de Biología Molecular, Universidad Autónoma de Madrid (UAM), 28049, Madrid, Spain.; Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Madrid, Spain.; Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA.
Maza MC; Departamento de Biología Molecular, Universidad Autónoma de Madrid (UAM), 28049, Madrid, Spain.; Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Madrid, Spain.
Del Moral-Salmoral J; Departamento de Biología Molecular, Universidad Autónoma de Madrid (UAM), 28049, Madrid, Spain.; Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Madrid, Spain.
Gómez-Montes M; Departamento de Biología Molecular, Universidad Autónoma de Madrid (UAM), 28049, Madrid, Spain.; Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Madrid, Spain.
Rodríguez-Angulo HO; Instituto Venezolano de Investigaciones Científicas- IVIC, Caracas, 1021, Venezuela.
Carrillo I; Division of Infectious Diseases, IIS-Fundación Jiménez Díaz, Madrid, Spain.; Department of Medicine, Universidad Autónoma de Madrid, Madrid, Spain.
Górgolas M; Division of Infectious Diseases, IIS-Fundación Jiménez Díaz, Madrid, Spain.; Department of Medicine, Universidad Autónoma de Madrid, Madrid, Spain.
Bosch-Nicolau P; International Health Unit Vall d'Hebron-Drassanes, Infectious Diseases Department, Vall d'Hebron University Hospital, PROSICS Barcelona, Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Infecciosas (CIBERINFEC), Instituto de Salud Carlos III, Madrid, Spain.
Molina I; International Health Unit Vall d'Hebron-Drassanes, Infectious Diseases Department, Vall d'Hebron University Hospital, PROSICS Barcelona, Barcelona, Spain.; Centro de Investigación Biomédica en Red de Enfermedades Infecciosas (CIBERINFEC), Instituto de Salud Carlos III, Madrid, Spain.
Pérez-Molina JA; National Referral Unit for Tropical Diseases, Infectious Diseases Department, Ramón y Cajal University Hospital, IRICYS, Madrid, Spain.; CIBER de Enfermedades Infecciosas, Instituto de Salud Carlos III, Madrid, Spain.
Monge-Maillo B; National Referral Unit for Tropical Diseases, Infectious Diseases Department, Ramón y Cajal University Hospital, IRICYS, Madrid, Spain.; CIBER de Enfermedades Infecciosas, Instituto de Salud Carlos III, Madrid, Spain.
Bottasso OA; Instituto de Inmunología Clínica y Experimental de Rosario (IDICER-CONICET-UNR), Rosario, Argentina.
Beloscar J; Cátedra y Servicio de Cardiología, Sección Chagas, Hospital Provincial del Centenario, Rosario, Argentina.
Pérez AR; Instituto de Inmunología Clínica y Experimental de Rosario (IDICER-CONICET-UNR), Rosario, Argentina.
Fresno M; Departamento de Biología Molecular, Universidad Autónoma de Madrid (UAM), 28049, Madrid, Spain.; Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Madrid, Spain.; Instituto Universitario de Biología Molecular, Universidad Autónoma de Madrid (IUBM-UAM), Madrid, Spain.; Instituto de Investigación Sanitaria, Hospital Universitario de La Princesa, Madrid, Spain.
Gironès N; Departamento de Biología Molecular, Universidad Autónoma de Madrid (UAM), 28049, Madrid, Spain. .; Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Madrid, Spain. .; Instituto Universitario de Biología Molecular, Universidad Autónoma de Madrid (IUBM-UAM), Madrid, Spain. .; Instituto de Investigación Sanitaria, Hospital Universitario de La Princesa, Madrid, Spain. .
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Źródło:
Scientific reports [Sci Rep] 2024 Jan 12; Vol. 14 (1), pp. 1187. Date of Electronic Publication: 2024 Jan 12.
Typ publikacji:
Journal Article
MeSH Terms:
Circulating MicroRNA*
MicroRNAs*/metabolism
Heart Diseases*
Chagas Disease*/diagnosis
Chagas Disease*/genetics
Humans ; RNA-Seq ; Biomarkers/metabolism ; Chronic Disease
Czasopismo naukowe

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