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Tytuł:
An RNA-seq time series of the medaka pituitary gland during sexual maturation.
Autorzy:
Ager-Wick E; Physiology Unit, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway.
Maugars G; Physiology Unit, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway.; Stress Environnementaux et BIOsurveillance des milieux aquatiques UMR-I 02 SEBIO, Université Le Havre Normandie, Le Havre, France.
von Krogh K; Physiology Unit, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway.
Fontaine R; Physiology Unit, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway.
Weltzien FA; Physiology Unit, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway. .
Henkel C; Physiology Unit, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway. .
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Źródło:
Scientific data [Sci Data] 2023 Jan 31; Vol. 10 (1), pp. 62. Date of Electronic Publication: 2023 Jan 31.
Typ publikacji:
Dataset; Journal Article
MeSH Terms:
Oryzias*/genetics
RNA-Seq*
Animals ; Female ; Pituitary Gland ; Sexual Maturation ; Time Factors
Czasopismo naukowe
Szczegóły
Tytuł:
Live-seq enables temporal transcriptomic recording of single cells.
Autorzy:
Chen W; Laboratory of Systems Biology and Genetics, Institute of Bio-engineering and Global Health Institute, School of Life Sciences, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.; CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Guillaume-Gentil O; Department of Biology, Institute of Microbiology, ETH Zurich, Zurich, Switzerland.
Rainer PY; Laboratory of Systems Biology and Genetics, Institute of Bio-engineering and Global Health Institute, School of Life Sciences, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Gäbelein CG; Department of Biology, Institute of Microbiology, ETH Zurich, Zurich, Switzerland.
Saelens W; Laboratory of Systems Biology and Genetics, Institute of Bio-engineering and Global Health Institute, School of Life Sciences, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Gardeux V; Laboratory of Systems Biology and Genetics, Institute of Bio-engineering and Global Health Institute, School of Life Sciences, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Klaeger A; Laboratory of Systems Biology and Genetics, Institute of Bio-engineering and Global Health Institute, School of Life Sciences, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Dainese R; Laboratory of Systems Biology and Genetics, Institute of Bio-engineering and Global Health Institute, School of Life Sciences, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Zachara M; Laboratory of Systems Biology and Genetics, Institute of Bio-engineering and Global Health Institute, School of Life Sciences, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Zambelli T; Laboratory of Biosensors and Bioelectronics, Institute for Biomedical Engineering, ETH Zurich, Zurich, Switzerland.
Vorholt JA; Department of Biology, Institute of Microbiology, ETH Zurich, Zurich, Switzerland. .
Deplancke B; Laboratory of Systems Biology and Genetics, Institute of Bio-engineering and Global Health Institute, School of Life Sciences, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland. .; Swiss Institute of Bioinformatics, Lausanne, Switzerland. .
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Źródło:
Nature [Nature] 2022 Aug; Vol. 608 (7924), pp. 733-740. Date of Electronic Publication: 2022 Aug 17.
Typ publikacji:
Journal Article
MeSH Terms:
Cell Survival*
Gene Expression Profiling*/methods
Gene Expression Profiling*/standards
Macrophages*/cytology
Macrophages*/drug effects
Macrophages*/immunology
Macrophages*/metabolism
RNA-Seq*/methods
RNA-Seq*/standards
Single-Cell Analysis*/methods
Transcriptome*/genetics
Adipose Tissue/cytology ; Cell Cycle/drug effects ; Cell Cycle/genetics ; Cell Differentiation ; Genome/drug effects ; Genome/genetics ; Lipopolysaccharides/immunology ; Lipopolysaccharides/pharmacology ; NF-KappaB Inhibitor alpha/genetics ; Organ Specificity ; Phenotype ; RNA/genetics ; RNA/isolation & purification ; Reproducibility of Results ; Sequence Analysis, RNA/methods ; Sequence Analysis, RNA/standards ; Stromal Cells/cytology ; Stromal Cells/metabolism ; Time Factors
Czasopismo naukowe
Szczegóły
Tytuł:
Transcriptome variation in human tissues revealed by long-read sequencing.
Autorzy:
Glinos DA; New York Genome Center, New York, NY, USA. .; Department of Systems Biology, Columbia University, New York, NY, USA. .
Garborcauskas G; Medical and Population Genetics Program, The Broad Institute of MIT and Harvard, Cambridge, MA, USA. .
Hoffman P; New York Genome Center, New York, NY, USA.
Ehsan N; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Jiang L; Department of Genetics, Stanford University, Stanford, CA, USA.
Gokden A; New York Genome Center, New York, NY, USA.
Dai X; Oxford Nanopore Technology, New York, NY, USA.
Aguet F; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Brown KL; New York Genome Center, New York, NY, USA.; Department of Biomedical Informatics, Columbia University, New York, NY, USA.
Garimella K; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Bowers T; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Costello M; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Ardlie K; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Jian R; Department of Genetics, Stanford University, Stanford, CA, USA.
Tucker NR; Masonic Medical Research Institute, Utica, NY, USA.; Cardiovascular Disease Initiative, The Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Ellinor PT; Cardiovascular Disease Initiative, The Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Harrington ED; Oxford Nanopore Technology, New York, NY, USA.
Tang H; Department of Genetics, Stanford University, Stanford, CA, USA.
Snyder M; Department of Genetics, Stanford University, Stanford, CA, USA.
Juul S; Oxford Nanopore Technology, New York, NY, USA.
Mohammadi P; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.; Scripps Research Translational Institute, La Jolla, CA, USA.
MacArthur DG; Medical and Population Genetics Program, The Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Centre for Population Genomics, Garvan Institute of Medical Research, and UNSW Sydney, Sydney, New South Wales, Australia.; Centre for Population Genomics, Murdoch Children's Research Institute, Melbourne, Victoria, Australia.
Lappalainen T; New York Genome Center, New York, NY, USA. .; Department of Systems Biology, Columbia University, New York, NY, USA. .; Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, Stockholm, Sweden. .
Cummings BB; Medical and Population Genetics Program, The Broad Institute of MIT and Harvard, Cambridge, MA, USA. .
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Źródło:
Nature [Nature] 2022 Aug; Vol. 608 (7922), pp. 353-359. Date of Electronic Publication: 2022 Aug 03.
Typ publikacji:
Journal Article
MeSH Terms:
Alleles*
Gene Expression Profiling*
Organ Specificity*/genetics
RNA-Seq*
Transcriptome*/genetics
Alternative Splicing/genetics ; Cell Line ; Datasets as Topic ; Genotype ; Heterogeneous-Nuclear Ribonucleoproteins/deficiency ; Heterogeneous-Nuclear Ribonucleoproteins/genetics ; Humans ; Polypyrimidine Tract-Binding Protein/deficiency ; Polypyrimidine Tract-Binding Protein/genetics ; Reproducibility of Results
Czasopismo naukowe
Szczegóły
Tytuł:
Single-cell RNA-seq of primary bone marrow neutrophils from female and male adult mice.
Autorzy:
Kim M; Leonard Davis School of Gerontology, University of Southern California, Los Angeles, CA, USA.
Lu RJ; Leonard Davis School of Gerontology, University of Southern California, Los Angeles, CA, USA.; Graduate Program in the Biology of Aging, University of Southern California, Los Angeles, CA, USA.
Benayoun BA; Leonard Davis School of Gerontology, University of Southern California, Los Angeles, CA, USA. .; Molecular and Computational Biology Department, USC Dornsife College of Letters, Arts and Sciences, Los Angeles, CA, USA. .; Biochemistry and Molecular Medicine Department, USC Keck School of Medicine, Los Angeles, CA, 90089, USA. .; USC Norris Comprehensive Cancer Center, Epigenetics and Gene Regulation, Los Angeles, CA, USA. .; USC Stem Cell Initiative, Los Angeles, CA, USA. .
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Źródło:
Scientific data [Sci Data] 2022 Jul 23; Vol. 9 (1), pp. 442. Date of Electronic Publication: 2022 Jul 23.
Typ publikacji:
Dataset; Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Bone Marrow*/metabolism
Neutrophils*/metabolism
RNA-Seq*
Animals ; Cell Differentiation ; Female ; Male ; Mice ; Single-Cell Analysis ; Transcriptome
Czasopismo naukowe
Szczegóły
Tytuł:
Visualizing Cluster-specific Genes from Single-cell Transcriptomics Data Using Association Plots.
Autorzy:
Gralinska E; Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany. Electronic address: https://twitter.com/ela_gralinska.
Kohl C; Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany. Electronic address: https://twitter.com/ClemensKohl.
Sokhandan Fadakar B; Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Vingron M; Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany. Electronic address: .
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Źródło:
Journal of molecular biology [J Mol Biol] 2022 Jun 15; Vol. 434 (11), pp. 167525. Date of Electronic Publication: 2022 Mar 07.
Typ publikacji:
Journal Article
MeSH Terms:
RNA-Seq*
Single-Cell Analysis*/methods
Transcriptome*/genetics
Algorithms ; Cluster Analysis ; Gene Expression Profiling/methods ; Humans ; Leukocytes, Mononuclear ; Principal Component Analysis
Czasopismo naukowe
Szczegóły
Tytuł:
CellDepot: A Unified Repository for scRNA-seq Data and Visual Exploration.
Autorzy:
Lin D; Research Department, Biogen, Inc., 225 Binney St, Cambridge, MA 02142, USA. Electronic address: .
Chen Y; Research Department, Biogen, Inc., 225 Binney St, Cambridge, MA 02142, USA. Electronic address: .
Negi S; Research Department, Biogen, Inc., 225 Binney St, Cambridge, MA 02142, USA. Electronic address: .
Cheng D; BioInfoRx, Inc., 510 Charmany Dr, Suite 275A, Madison, WI 53719, USA. Electronic address: .
Ouyang Z; BioInfoRx, Inc., 510 Charmany Dr, Suite 275A, Madison, WI 53719, USA. Electronic address: .
Sexton D; Research Department, Biogen, Inc., 225 Binney St, Cambridge, MA 02142, USA. Electronic address: .
Li K; Research Department, Biogen, Inc., 225 Binney St, Cambridge, MA 02142, USA. Electronic address: .
Zhang B; Research Department, Biogen, Inc., 225 Binney St, Cambridge, MA 02142, USA. Electronic address: .
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Źródło:
Journal of molecular biology [J Mol Biol] 2022 Jun 15; Vol. 434 (11), pp. 167425. Date of Electronic Publication: 2021 Dec 28.
Typ publikacji:
Journal Article
MeSH Terms:
Datasets as Topic*
Internet Use*
RNA-Seq*
Single-Cell Analysis*
Software*
Transcriptome*
Gene Expression Profiling ; Exome Sequencing
Czasopismo naukowe
Szczegóły
Tytuł:
popsicleR: A R Package for Pre-processing and Quality Control Analysis of Single Cell RNA-seq Data.
Autorzy:
Grandi F; Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy.
Caroli J; Department of Drug Design and Pharmacology, University of Copenhagen, Copenhagen, Denmark.
Romano O; Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy.
Marchionni M; Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy.
Forcato M; Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy. Electronic address: .
Bicciato S; Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy. Electronic address: .
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Źródło:
Journal of molecular biology [J Mol Biol] 2022 Jun 15; Vol. 434 (11), pp. 167560. Date of Electronic Publication: 2022 Mar 24.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
RNA-Seq*/methods
Single-Cell Analysis*/methods
Software*
Gene Expression Profiling/methods ; Quality Control
Czasopismo naukowe
Szczegóły
Tytuł:
Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function.
Autorzy:
Eraslan G; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Drokhlyansky E; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Anand S; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Fiskin E; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Subramanian A; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Slyper M; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Wang J; Department of Ophthalmology, Harvard Medical School, Boston, MA 02115, USA.; Ocular Genomics Institute, Department of Ophthalmology, Massachusetts Eye and Ear, Harvard Medical School, Boston, MA 02114, USA.; Medical and Population Genetics Program, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Van Wittenberghe N; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Rouhana JM; Department of Ophthalmology, Harvard Medical School, Boston, MA 02115, USA.; Ocular Genomics Institute, Department of Ophthalmology, Massachusetts Eye and Ear, Harvard Medical School, Boston, MA 02114, USA.; Medical and Population Genetics Program, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Waldman J; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Ashenberg O; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Lek M; Department of Genetics, Yale School of Medicine, New Haven, CT 06510, USA.
Dionne D; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Win TS; Department of Dermatology, Brigham and Women's Hospital, Boston, MA 02115, USA.
Cuoco MS; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Kuksenko O; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Tsankov AM; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Branton PA; The Joint Pathology Center Gynecologic/Breast Pathology, Silver Spring, MD 20910, USA.
Marshall JL; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Greka A; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115, USA.
Getz G; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Center for Cancer Research and Department of Pathology, Massachusetts General Hospital, Boston, MA 02114, USA.; Harvard Medical School, Boston, MA 02115, USA.
Segrè AV; Department of Ophthalmology, Harvard Medical School, Boston, MA 02115, USA.; Ocular Genomics Institute, Department of Ophthalmology, Massachusetts Eye and Ear, Harvard Medical School, Boston, MA 02114, USA.; Medical and Population Genetics Program, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Aguet F; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Rozenblatt-Rosen O; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Ardlie KG; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Regev A; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
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Źródło:
Science (New York, N.Y.) [Science] 2022 May 13; Vol. 376 (6594), pp. eabl4290. Date of Electronic Publication: 2022 May 13.
Typ publikacji:
Journal Article
MeSH Terms:
Cell Nucleus*/genetics
Disease*/genetics
RNA-Seq*/methods
Biomarkers ; Genome-Wide Association Study ; Humans ; Organ Specificity ; Phenotype
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Transcriptome of visceral adipose tissue identifies an inflammation-related ceRNA network that regulates obesity.
Autorzy:
Li G; The General Surgery Department of Beijing Chaoyang Hospital, Capital Medical University, No. 8 Gongtinan lu, Chaoyang District, Beijing, 100020, People's Republic of China.
Zhang H; The General Surgery Department of Beijing Chaoyang Hospital, Capital Medical University, No. 8 Gongtinan lu, Chaoyang District, Beijing, 100020, People's Republic of China.
Cao K; The General Surgery Department of Beijing Chaoyang Hospital, Capital Medical University, No. 8 Gongtinan lu, Chaoyang District, Beijing, 100020, People's Republic of China.
Zhai Z; The General Surgery Department of Beijing Chaoyang Hospital, Capital Medical University, No. 8 Gongtinan lu, Chaoyang District, Beijing, 100020, People's Republic of China.
Wang Z; The General Surgery Department of Beijing Chaoyang Hospital, Capital Medical University, No. 8 Gongtinan lu, Chaoyang District, Beijing, 100020, People's Republic of China.
Yang L; The General Surgery Department of Beijing Chaoyang Hospital, Capital Medical University, No. 8 Gongtinan lu, Chaoyang District, Beijing, 100020, People's Republic of China. .; Medical Research Center of Beijing Chaoyang Hospital, Capital Medical University, No. 8 Gongtinan lu, Chaoyang District, Beijing, 100020, People's Republic of China. .
Han J; The General Surgery Department of Beijing Chaoyang Hospital, Capital Medical University, No. 8 Gongtinan lu, Chaoyang District, Beijing, 100020, People's Republic of China. .
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Źródło:
Molecular and cellular biochemistry [Mol Cell Biochem] 2022 Apr; Vol. 477 (4), pp. 1095-1106. Date of Electronic Publication: 2022 Jan 22.
Typ publikacji:
Journal Article
MeSH Terms:
MicroRNAs*/biosynthesis
MicroRNAs*/genetics
Obesity*/genetics
Obesity*/metabolism
RNA, Long Noncoding*/biosynthesis
RNA, Long Noncoding*/genetics
RNA-Seq*
Transcriptome*
Intra-Abdominal Fat/*metabolism
Female ; Humans ; Male
Czasopismo naukowe
Szczegóły
Tytuł:
RNA-seq analysis of peripheral blood dendritic cells maturated by dezocine in patients with lung cancer.
Autorzy:
Feng M; Department of Pathology, Affiliated Hospital of Shandong Academy of Medical Sciences, Shandong First Medical University, 38 Wu Ying Shan Street, 25000, Jinan, China.
Jiang Y; Department of Hematology, The Second Hospital, Cheeloo College of Medicine, Shandong University, 247 Bei Yuan Street, 250033, Jinan, China.
Liu D; Department of Anesthesiology, The Second Hospital, Cheeloo College of Medicine, Shandong University, 247 Bei Yuan Street, 250033, Jinan, China.
Cheng G; Institute of Medical Sciences, The Second Hospital, Cheeloo College of Medicine, Shandong University, 247 Bei Yuan Street, 250033, Jinan, China.
Zhang W; Department of Thoracic Surgery, The Second Hospital, Cheeloo College of Medicine, Shandong University, 247 Bei Yuan Street, 250033, Jinan, China.
Feng C; Department of Anesthesiology, The Second Hospital, Cheeloo College of Medicine, Shandong University, 247 Bei Yuan Street, 250033, Jinan, China. Electronic address: .
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Źródło:
Molecular immunology [Mol Immunol] 2022 Mar; Vol. 143, pp. 85-93. Date of Electronic Publication: 2022 Jan 25.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
RNA-Seq*
Bridged Bicyclo Compounds, Heterocyclic/*pharmacology
Cell Differentiation/*genetics
Dendritic Cells/*metabolism
Lung Neoplasms/*blood
Lung Neoplasms/*genetics
Tetrahydronaphthalenes/*pharmacology
CD8-Positive T-Lymphocytes/drug effects ; CD8-Positive T-Lymphocytes/metabolism ; Cell Death/drug effects ; Cell Differentiation/drug effects ; Cell Proliferation/drug effects ; Cytokines/metabolism ; Dendritic Cells/drug effects ; Gene Expression Profiling ; Genome, Human ; Humans ; Reproducibility of Results
Czasopismo naukowe
Szczegóły
Tytuł:
Exploration the role of INHBA in Hu sheep granulosa cells using RNA-Seq.
Autorzy:
Bao Y; Hu Sheep Academy, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Livestock Embryo Engineering Laboratory, Nanjing Agricultural University, Nanjing, 210095, China.
Li X; Hu Sheep Academy, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Livestock Embryo Engineering Laboratory, Nanjing Agricultural University, Nanjing, 210095, China.
El-Samahy MA; Hu Sheep Academy, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Livestock Embryo Engineering Laboratory, Nanjing Agricultural University, Nanjing, 210095, China; Animal Production Research Institute, ARC, Ministry of Agriculture, Giza, Egypt.
Yang H; Hu Sheep Academy, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Livestock Embryo Engineering Laboratory, Nanjing Agricultural University, Nanjing, 210095, China.
Wang Z; Hu Sheep Academy, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Livestock Embryo Engineering Laboratory, Nanjing Agricultural University, Nanjing, 210095, China.
Yang F; Hu Sheep Academy, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Livestock Embryo Engineering Laboratory, Nanjing Agricultural University, Nanjing, 210095, China.
Yao X; Hu Sheep Academy, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Livestock Embryo Engineering Laboratory, Nanjing Agricultural University, Nanjing, 210095, China.
Wang F; Hu Sheep Academy, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Livestock Embryo Engineering Laboratory, Nanjing Agricultural University, Nanjing, 210095, China. Electronic address: .
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Źródło:
Theriogenology [Theriogenology] 2023 Feb; Vol. 197, pp. 198-208. Date of Electronic Publication: 2022 Dec 10.
Typ publikacji:
Journal Article
MeSH Terms:
Phosphatidylinositol 3-Kinases*/metabolism
Proto-Oncogene Proteins c-akt*/metabolism
Female ; Animals ; Sheep/genetics ; RNA-Seq/veterinary ; Inhibins/metabolism ; Granulosa Cells/physiology
Czasopismo naukowe
Szczegóły
Tytuł:
Identification of novel PIEZO1::CBFA2T3 and INO80C::SETBP1 fusion genes in an acute myeloid leukemia patient by RNA-seq.
Autorzy:
Li Y; Department of Hematology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Liu Y; Department of Hematology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Gao X; Department of Hematology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Zhao W; Department of Hematology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Zhou F; Department of Hematology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Liu H; Division of Pathology & Laboratory Medicine, Hebei Yanda Lu Daopei Hospital, Langfang, 065201, China. .; Beijing Lu Daopei Institute of Hematology, Beijing, 100076, China. .; Division of Pathology & Laboratory Medicine, Beijing Lu Daopei Hospital, Beijing, 100076, China. .
Wang W; Department of Hematology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China. .
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Źródło:
Molecular biology reports [Mol Biol Rep] 2023 Feb; Vol. 50 (2), pp. 1961-1966. Date of Electronic Publication: 2022 Dec 06.
Typ publikacji:
Journal Article
MeSH Terms:
Leukemia, Myeloid, Acute*/pathology
Humans ; Male ; RNA-Seq ; Genes, Regulator ; Base Sequence ; Repressor Proteins/genetics ; Carrier Proteins/genetics ; Nuclear Proteins/genetics ; Ion Channels/genetics ; Ion Channels/metabolism
Czasopismo naukowe
Szczegóły
Tytuł:
A Nile rat transcriptomic landscape across 22 organs by ultra-deep sequencing and comparative RNA-seq pipeline (CRSP).
Autorzy:
Toh H; Neuroscience Research Institute, University of California Santa Barbara, Santa Barbara, CA, USA.
Bagheri A; Department of Biological, Geological and Environmental Sciences, Cleveland State University, Cleveland, OH 44115, USA; Center for Gene Regulation in Health and Disease, Cleveland State University, Cleveland, OH 44115, USA.
Dewey C; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI 53706, USA; Department of Computer Science, University of Wisconsin-Madison, Madison, WI 53706, USA.
Stewart R; Morgridge Institute for Research, Madison, WI 53706, USA.
Yan L; Department of Psychology and Neuroscience Program, Michigan State University, East Lansing, MI, USA.
Clegg D; Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, CA, USA.
Thomson JA; Morgridge Institute for Research, Madison, WI 53706, USA; Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, CA, USA.
Jiang P; Department of Biological, Geological and Environmental Sciences, Cleveland State University, Cleveland, OH 44115, USA; Center for Gene Regulation in Health and Disease, Cleveland State University, Cleveland, OH 44115, USA; Center for RNA Science and Therapeutics, School of Medicine, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106, USA. Electronic address: .
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Źródło:
Computational biology and chemistry [Comput Biol Chem] 2023 Feb; Vol. 102, pp. 107795. Date of Electronic Publication: 2022 Nov 23.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*/genetics
Murinae*
Humans ; Animals ; RNA-Seq ; Gene Expression Profiling ; Genome ; Sequence Analysis, RNA/methods ; High-Throughput Nucleotide Sequencing
Czasopismo naukowe
Szczegóły
Tytuł:
RNA-Seq revealed the effect of adding different proportions of wheat diet on fat metabolism of Tibetan lamb.
Autorzy:
Ma BY; College of Agriculture and Animal Husbandry, Qinghai University, Xining, Qinghai Province 810016, People's Republic of China.
Raza SHA; College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi 712100, People's Republic of China; College of Food Science, South China Agricultural University, Guangzhou, 510642, China.
Hou S; College of Agriculture and Animal Husbandry, Qinghai University, Xining, Qinghai Province 810016, People's Republic of China.
Wang Z; College of Agriculture and Animal Husbandry, Qinghai University, Xining, Qinghai Province 810016, People's Republic of China.
Gao ZH; College of Agriculture and Animal Husbandry, Qinghai University, Xining, Qinghai Province 810016, People's Republic of China.
Almohaimeed HM; Department of Basic Science, College of Medicine, Princess Nourah Bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia.
Alotaibi SA; Physiotherapy Department at Sultan Bin Abdulaziz Humanitarian City, Saudi Arabia.
Alhudaithy A; Sultan Bin Abdulaziz Humanitarian City, Saudi Arabia.
Assiri R; Department of Basic Medical Sciences, College of Medicine, Princess Nourah Bint Abdulrahman University, P.O. Box 11671, Riyadh, Saudi Arabia.
Gui LS; College of Agriculture and Animal Husbandry, Qinghai University, Xining, Qinghai Province 810016, People's Republic of China. Electronic address: .
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Źródło:
Gene [Gene] 2023 Jan 30; Vol. 851, pp. 147031. Date of Electronic Publication: 2022 Nov 04.
Typ publikacji:
Journal Article
MeSH Terms:
Triticum*/genetics
Diet*
Sheep ; Animals ; RNA-Seq ; Tibet ; Sequence Analysis, RNA/methods ; Gene Expression Profiling ; Transcriptome
Czasopismo naukowe
Szczegóły
Tytuł:
Integrated analysis of single-cell RNA-seq and bulk RNA-seq unveils heterogeneity and establishes a novel signature for prognosis and tumor immune microenvironment in ovarian cancer.
Autorzy:
Wang Z; Department of Obstetrics and Gynecology, Renmin Hospital of Wuhan University, Wuhan, Hubei, China.
Zhang J; Department of Obstetrics and Gynecology, Renmin Hospital of Wuhan University, Wuhan, Hubei, China.
Dai F; Department of Obstetrics and Gynecology, Renmin Hospital of Wuhan University, Wuhan, Hubei, China.
Li B; Department of Obstetrics and Gynecology, Renmin Hospital of Wuhan University, Wuhan, Hubei, China. .
Cheng Y; Department of Obstetrics and Gynecology, Renmin Hospital of Wuhan University, Wuhan, Hubei, China. .
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Źródło:
Journal of ovarian research [J Ovarian Res] 2023 Jan 16; Vol. 16 (1), pp. 12. Date of Electronic Publication: 2023 Jan 16.
Typ publikacji:
Journal Article
MeSH Terms:
Single-Cell Gene Expression Analysis*
Ovarian Neoplasms*/genetics
Humans ; Female ; RNA-Seq ; Tumor Microenvironment/genetics ; Prognosis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A Comprehensive Exploration of the Transcriptomic Landscape in Multiple Sclerosis: A Systematic Review.
Autorzy:
Chiricosta L; IRCCS Centro Neurolesi 'Bonino-Pulejo', Via Provinciale Palermo, Contrada Casazza, 98124 Messina, Italy.
Blando S; IRCCS Centro Neurolesi 'Bonino-Pulejo', Via Provinciale Palermo, Contrada Casazza, 98124 Messina, Italy.
D'Angiolini S; IRCCS Centro Neurolesi 'Bonino-Pulejo', Via Provinciale Palermo, Contrada Casazza, 98124 Messina, Italy.
Gugliandolo A; IRCCS Centro Neurolesi 'Bonino-Pulejo', Via Provinciale Palermo, Contrada Casazza, 98124 Messina, Italy.
Mazzon E; IRCCS Centro Neurolesi 'Bonino-Pulejo', Via Provinciale Palermo, Contrada Casazza, 98124 Messina, Italy.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2023 Jan 11; Vol. 24 (2). Date of Electronic Publication: 2023 Jan 11.
Typ publikacji:
Systematic Review; Journal Article; Review
MeSH Terms:
Transcriptome*
Multiple Sclerosis*/genetics
Humans ; Gene Expression Profiling ; RNA-Seq
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
RNA-Seq and genetic diversity analysis of faba bean ( Vicia faba L.) varieties in China.
Autorzy:
Hou W; College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China.; Qinghai Academy of Agricultural and Forestry Sciences, Qinghai University, Xining, Qinghai, China.
Zhang X; College of Eco-Environmental Engineering, Qinghai Universit, Xining, Qinghai, China.
Liu Y; Qinghai Academy of Agricultural and Forestry Sciences, Qinghai University, Xining, Qinghai, China.
Liu Y; Qinghai Academy of Agricultural and Forestry Sciences, Qinghai University, Xining, Qinghai, China.
Feng BL; College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China.
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Źródło:
PeerJ [PeerJ] 2023 Jan 10; Vol. 11, pp. e14259. Date of Electronic Publication: 2023 Jan 10 (Print Publication: 2023).
Typ publikacji:
Journal Article
MeSH Terms:
Vicia faba*/genetics
RNA-Seq ; Polymorphism, Genetic/genetics ; Gene Expression Profiling ; Transcriptome/genetics
Czasopismo naukowe
Szczegóły
Tytuł:
ATAC-seq and RNA-seq analysis unravel the mechanism of sex differentiation and infertility in sex reversal chicken.
Autorzy:
Zhang X; National Engineering Laboratory for Animal Breeding and Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China.
Li J; National Engineering Laboratory for Animal Breeding and Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China.
Wang X; National Engineering Laboratory for Animal Breeding and Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China.
Jie Y; National Engineering Laboratory for Animal Breeding and Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China.
Sun C; National Engineering Laboratory for Animal Breeding and Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China.
Zheng J; National Engineering Laboratory for Animal Breeding and Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China.
Li J; National Engineering Laboratory for Animal Breeding and Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China.
Yang N; National Engineering Laboratory for Animal Breeding and Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China.
Chen S; National Engineering Laboratory for Animal Breeding and Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing, China. .
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Źródło:
Epigenetics & chromatin [Epigenetics Chromatin] 2023 Jan 09; Vol. 16 (1), pp. 2. Date of Electronic Publication: 2023 Jan 09.
Typ publikacji:
Journal Article
MeSH Terms:
Chickens*/genetics
Infertility*/genetics
Infertility*/metabolism
Chick Embryo ; Animals ; Female ; Male ; Sex Differentiation/genetics ; Fadrozole/metabolism ; Fadrozole/pharmacology ; Chromatin Immunoprecipitation Sequencing ; RNA-Seq ; Sex Determination Processes ; Semen ; Gonads/metabolism ; Aromatase Inhibitors/metabolism ; Chromatin/genetics ; Chromatin/metabolism ; Gene Expression Regulation, Developmental
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Integrating BSA-Seq with RNA-Seq Reveals a Novel Fasciated Ear5 Mutant in Maize.
Autorzy:
Yan P; National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China.
Li W; National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China.; The Shennong Laboratory, Zhengzhou 450002, China.
Zhou E; National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China.
Xing Y; National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China.
Li B; National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China.
Liu J; National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China.
Zhang Z; National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China.
Ding D; National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China.
Fu Z; National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China.
Xie H; National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China.
Tang J; National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China.; The Shennong Laboratory, Zhengzhou 450002, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2023 Jan 07; Vol. 24 (2). Date of Electronic Publication: 2023 Jan 07.
Typ publikacji:
Journal Article
MeSH Terms:
Plant Growth Regulators*
Gene Expression Profiling*
RNA-Seq ; Zea mays/genetics ; Gibberellins ; Gene Expression Regulation, Plant ; Transcriptome
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A Phylogenetic Framework to Simulate Synthetic Interspecies RNA-Seq Data.
Autorzy:
Bastide P; IMAG, Université de Montpellier, CNRS, Montpellier, France.
Soneson C; Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, 4058 Basel, Switzerland.
Stern DB; Department of Integrative Biology, University of Wisconsin-Madison, 430 Lincoln Drive, Madison, WI 53706, USA.
Lespinet O; Institute for Integrative Biology of the Cell (I2BC), Université Paris-Saclay, CEA, CNRS, 91198 Gif-sur-Yvette, France.
Gallopin M; Institute for Integrative Biology of the Cell (I2BC), Université Paris-Saclay, CEA, CNRS, 91198 Gif-sur-Yvette, France.
Pokaż więcej
Źródło:
Molecular biology and evolution [Mol Biol Evol] 2023 Jan 04; Vol. 40 (1).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Gene Expression Profiling*/methods
RNA-Seq ; Phylogeny ; Sequence Analysis, RNA/methods
Czasopismo naukowe
Szczegóły
Wyświetlanie 1-20 z 53101

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