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Wyszukujesz frazę ""RNA-Seq"" wg kryterium: Temat


Tytuł:
A comparison of RNA-Seq data preprocessing pipelines for transcriptomic predictions across independent studies.
Autorzy:
Van R; School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA.; Nevada Institute of Personalized Medicine, Las Vegas, NV, USA.
Alvarez D; Department of Computer Science, University of Nevada Las Vegas, Las Vegas, NV, USA.; Nevada Institute of Personalized Medicine, Las Vegas, NV, USA.
Mize T; Icahn School of Medicine at Mount Sinai, Institute for Genomic Health, New York City, NY, USA.
Gannavarapu S; Department of Computer Science, University of Nevada Las Vegas, Las Vegas, NV, USA.; Nevada Institute of Personalized Medicine, Las Vegas, NV, USA.
Chintham Reddy L; Department of Computer Science, University of Nevada Las Vegas, Las Vegas, NV, USA.; Nevada Institute of Personalized Medicine, Las Vegas, NV, USA.
Nasoz F; Department of Computer Science, University of Nevada Las Vegas, Las Vegas, NV, USA.; Nevada Institute of Personalized Medicine, Las Vegas, NV, USA.
Han MV; School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA. .; Nevada Institute of Personalized Medicine, Las Vegas, NV, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 May 08; Vol. 25 (1), pp. 181. Date of Electronic Publication: 2024 May 08.
Typ publikacji:
Journal Article; Comparative Study
MeSH Terms:
RNA-Seq*/methods
Neoplasms*/genetics
Machine Learning*
Humans ; Transcriptome/genetics ; Sequence Analysis, RNA/methods ; Gene Expression Profiling/methods ; Computational Biology/methods
Czasopismo naukowe
Tytuł:
The effect of data transformation on low-dimensional integration of single-cell RNA-seq.
Autorzy:
Park Y; Department of Medical Informatics, University Medical Center Göttingen, Göttingen, Germany.; International Max Planck Research Schools for Genome Science, Georg-August-Universität Göttingen, Göttingen, Germany.
Hauschild AC; Department of Medical Informatics, University Medical Center Göttingen, Göttingen, Germany. .; Campus-Institute Data Science (CIDAS), Georg-August-Universität Göttingen, Göttingen, Germany. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Apr 30; Vol. 25 (1), pp. 171. Date of Electronic Publication: 2024 Apr 30.
Typ publikacji:
Journal Article
MeSH Terms:
Single-Cell Analysis*/methods
RNA-Seq*/methods
Cluster Analysis ; Humans ; Sequence Analysis, RNA/methods ; Algorithms ; Neural Networks, Computer ; Single-Cell Gene Expression Analysis
Czasopismo naukowe
Tytuł:
Multi-System-Level Analysis with RNA-Seq on Pterygium Inflammation Discovers Association between Inflammatory Responses, Oxidative Stress, and Oxidative Phosphorylation.
Autorzy:
Kim YA; Translational-Transdisciplinary Research Center, Clinical Research Institute, Kyung Hee University Hospital at Gangdong, Kyung Hee University College of Medicine, Seoul 05278, Republic of Korea.; Department of Biomedical Science and Technology, Graduate School, Kyung Hee University, Seoul 02453, Republic of Korea.
Choi Y; Translational-Transdisciplinary Research Center, Clinical Research Institute, Kyung Hee University Hospital at Gangdong, Kyung Hee University College of Medicine, Seoul 05278, Republic of Korea.; Department of Biomedical Science and Technology, Graduate School, Kyung Hee University, Seoul 02453, Republic of Korea.
Kim TG; Department of Ophthalmology, Kyung Hee University Hospital at Gangdong, Kyung Hee University College of Medicine, Seoul 05278, Republic of Korea.
Jeong J; Translational-Transdisciplinary Research Center, Clinical Research Institute, Kyung Hee University Hospital at Gangdong, Kyung Hee University College of Medicine, Seoul 05278, Republic of Korea.; Department of Biomedical Science and Technology, Graduate School, Kyung Hee University, Seoul 02453, Republic of Korea.
Yu S; Translational-Transdisciplinary Research Center, Clinical Research Institute, Kyung Hee University Hospital at Gangdong, Kyung Hee University College of Medicine, Seoul 05278, Republic of Korea.; Department of Biomedical Science and Technology, Graduate School, Kyung Hee University, Seoul 02453, Republic of Korea.
Kim T; Translational-Transdisciplinary Research Center, Clinical Research Institute, Kyung Hee University Hospital at Gangdong, Kyung Hee University College of Medicine, Seoul 05278, Republic of Korea.; Department of Biomedical Science and Technology, Graduate School, Kyung Hee University, Seoul 02453, Republic of Korea.
Sheen K; Translational-Transdisciplinary Research Center, Clinical Research Institute, Kyung Hee University Hospital at Gangdong, Kyung Hee University College of Medicine, Seoul 05278, Republic of Korea.; Department of Biomedical Science and Technology, Graduate School, Kyung Hee University, Seoul 02453, Republic of Korea.
Lee Y; Translational-Transdisciplinary Research Center, Clinical Research Institute, Kyung Hee University Hospital at Gangdong, Kyung Hee University College of Medicine, Seoul 05278, Republic of Korea.
Choi T; Department of Urology, School of Medicine, Kyung Hee University, Seoul 05278, Republic of Korea.
Park YH; Department of Microbiology, Ajou University School of Medicine, Suwon 16499, Republic of Korea.
Kang MS; Department of Ophthalmology, Kyung Hee University Hospital, Kyung Hee University College of Medicine, Seoul 02447, Republic of Korea.
Kim MS; Translational-Transdisciplinary Research Center, Clinical Research Institute, Kyung Hee University Hospital at Gangdong, Kyung Hee University College of Medicine, Seoul 05278, Republic of Korea.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Apr 27; Vol. 25 (9). Date of Electronic Publication: 2024 Apr 27.
Typ publikacji:
Journal Article
MeSH Terms:
Pterygium*/genetics
Pterygium*/metabolism
Oxidative Stress*/genetics
Inflammation*/genetics
Oxidative Phosphorylation*
RNA-Seq*
Humans ; Conjunctiva/metabolism ; Conjunctiva/pathology ; Male ; Female ; Gene Expression Regulation ; Middle Aged ; Signal Transduction/genetics
Czasopismo naukowe
Tytuł:
Bulked Segregant RNA-Seq Reveals Different Gene Expression Patterns and Mutant Genes Associated with the Zigzag Pattern of Tea Plants ( Camellia sinensis ).
Autorzy:
Ye YY; Key Laboratory of Biology, Genetics and Breeding of Special Economic Animals and Plants, Ministry of Agriculture and Rural Affairs, Tea Research Institute of the Chinese Academy of Agricultural Sciences, Hangzhou 310008, China.
Liu DD; Key Laboratory of Biology, Genetics and Breeding of Special Economic Animals and Plants, Ministry of Agriculture and Rural Affairs, Tea Research Institute of the Chinese Academy of Agricultural Sciences, Hangzhou 310008, China.
Tang RJ; Key Laboratory of Biology, Genetics and Breeding of Special Economic Animals and Plants, Ministry of Agriculture and Rural Affairs, Tea Research Institute of the Chinese Academy of Agricultural Sciences, Hangzhou 310008, China.
Gong Y; Key Laboratory of Biology, Genetics and Breeding of Special Economic Animals and Plants, Ministry of Agriculture and Rural Affairs, Tea Research Institute of the Chinese Academy of Agricultural Sciences, Hangzhou 310008, China.
Zhang CY; Key Laboratory of Biology, Genetics and Breeding of Special Economic Animals and Plants, Ministry of Agriculture and Rural Affairs, Tea Research Institute of the Chinese Academy of Agricultural Sciences, Hangzhou 310008, China.
Mei P; Key Laboratory of Biology, Genetics and Breeding of Special Economic Animals and Plants, Ministry of Agriculture and Rural Affairs, Tea Research Institute of the Chinese Academy of Agricultural Sciences, Hangzhou 310008, China.
Ma CL; Key Laboratory of Biology, Genetics and Breeding of Special Economic Animals and Plants, Ministry of Agriculture and Rural Affairs, Tea Research Institute of the Chinese Academy of Agricultural Sciences, Hangzhou 310008, China.
Chen JD; Key Laboratory of Biology, Genetics and Breeding of Special Economic Animals and Plants, Ministry of Agriculture and Rural Affairs, Tea Research Institute of the Chinese Academy of Agricultural Sciences, Hangzhou 310008, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Apr 21; Vol. 25 (8). Date of Electronic Publication: 2024 Apr 21.
Typ publikacji:
Journal Article
MeSH Terms:
Camellia sinensis*/genetics
Camellia sinensis*/metabolism
Polymorphism, Single Nucleotide*
Gene Expression Regulation, Plant*
RNA-Seq*
Plant Stems/genetics ; Plant Stems/metabolism ; Mutation ; Phenotype ; Lignin/metabolism ; Lignin/biosynthesis ; Transcriptome/genetics ; Gene Expression Profiling/methods ; Plant Proteins/genetics ; Plant Proteins/metabolism
Czasopismo naukowe
Tytuł:
Linking genome structures to functions by simultaneous single-cell Hi-C and RNA-seq.
Autorzy:
Liu Z; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Chen Y; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Xia Q; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Liu M; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Xu H; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Chi Y; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Deng Y; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
Xing D; Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University, Beijing, China.; Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China.
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Źródło:
Science (New York, N.Y.) [Science] 2023 Jun 09; Vol. 380 (6649), pp. 1070-1076. Date of Electronic Publication: 2023 Jun 08.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*/chemistry
Chromatin*/genetics
Genome*
RNA-Seq*/methods
Single-Cell Analysis*/methods
Embryonic Development*/genetics
Animals ; Mice ; Embryo, Mammalian ; Gene Expression Regulation, Developmental ; Cell Lineage/genetics
Czasopismo naukowe
Tytuł:
Data normalization for addressing the challenges in the analysis of single-cell transcriptomic datasets.
Autorzy:
Cuevas-Diaz Duran R; Tecnologico de Monterrey, Escuela de Medicina y Ciencias de la Salud, Monterrey, Nuevo Leon, 64710, Mexico. .
Wei H; The Vivian L. Smith Department of Neurosurgery, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA.; Center for Stem Cell and Regenerative Medicine, UT Brown Foundation Institute of Molecular Medicine, Houston, TX, 77030, USA.
Wu J; The Vivian L. Smith Department of Neurosurgery, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA. .; Center for Stem Cell and Regenerative Medicine, UT Brown Foundation Institute of Molecular Medicine, Houston, TX, 77030, USA. .; MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences, Houston, TX, 77030, USA. .
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Źródło:
BMC genomics [BMC Genomics] 2024 May 06; Vol. 25 (1), pp. 444. Date of Electronic Publication: 2024 May 06.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Single-Cell Analysis*/methods
Humans ; Gene Expression Profiling/methods ; Gene Expression Profiling/standards ; Sequence Analysis, RNA/methods ; Transcriptome ; Algorithms ; RNA-Seq/methods ; RNA-Seq/standards ; Animals
Czasopismo naukowe
Tytuł:
Laser capture microdissection transcriptome (LCM RNA-seq) reveals BcDFR is a key gene in anthocyanin synthesis of non-heading Chinese cabbage.
Autorzy:
Zhou Q; State Key Laboratory of Crop Genetics & Germplasm Enhancement, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (East China), Ministry of Agriculture and Rural Affairs of China, Engineering Research Center of Germplasm Enhancement and Utilization of Horticultural Crops, Ministry of Education of China, Nanjing Agricultural University, Nanjing, 210095, China.
Xu X; State Key Laboratory of Crop Genetics & Germplasm Enhancement, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (East China), Ministry of Agriculture and Rural Affairs of China, Engineering Research Center of Germplasm Enhancement and Utilization of Horticultural Crops, Ministry of Education of China, Nanjing Agricultural University, Nanjing, 210095, China.
Li M; State Key Laboratory of Crop Genetics & Germplasm Enhancement, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (East China), Ministry of Agriculture and Rural Affairs of China, Engineering Research Center of Germplasm Enhancement and Utilization of Horticultural Crops, Ministry of Education of China, Nanjing Agricultural University, Nanjing, 210095, China.
Yang X; State Key Laboratory of Crop Genetics & Germplasm Enhancement, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (East China), Ministry of Agriculture and Rural Affairs of China, Engineering Research Center of Germplasm Enhancement and Utilization of Horticultural Crops, Ministry of Education of China, Nanjing Agricultural University, Nanjing, 210095, China.
Wang M; State Key Laboratory of Crop Genetics & Germplasm Enhancement, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (East China), Ministry of Agriculture and Rural Affairs of China, Engineering Research Center of Germplasm Enhancement and Utilization of Horticultural Crops, Ministry of Education of China, Nanjing Agricultural University, Nanjing, 210095, China.
Li Y; State Key Laboratory of Crop Genetics & Germplasm Enhancement, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (East China), Ministry of Agriculture and Rural Affairs of China, Engineering Research Center of Germplasm Enhancement and Utilization of Horticultural Crops, Ministry of Education of China, Nanjing Agricultural University, Nanjing, 210095, China.
Hou X; State Key Laboratory of Crop Genetics & Germplasm Enhancement, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (East China), Ministry of Agriculture and Rural Affairs of China, Engineering Research Center of Germplasm Enhancement and Utilization of Horticultural Crops, Ministry of Education of China, Nanjing Agricultural University, Nanjing, 210095, China. .; Nanjing Suman Plasma Engineering Research Institute, Nanjing Agricultural University, Nanjing, 210095, China. .
Liu T; State Key Laboratory of Crop Genetics & Germplasm Enhancement, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (East China), Ministry of Agriculture and Rural Affairs of China, Engineering Research Center of Germplasm Enhancement and Utilization of Horticultural Crops, Ministry of Education of China, Nanjing Agricultural University, Nanjing, 210095, China. .
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Źródło:
BMC genomics [BMC Genomics] 2024 Apr 29; Vol. 25 (1), pp. 425. Date of Electronic Publication: 2024 Apr 29.
Typ publikacji:
Journal Article
MeSH Terms:
Anthocyanins*/biosynthesis
Brassica*/genetics
Brassica*/metabolism
Plant Proteins*/genetics
Plant Proteins*/metabolism
Transcriptome ; Laser Capture Microdissection ; Gene Expression Regulation, Plant ; Gene Expression Profiling ; Alcohol Oxidoreductases/genetics ; Alcohol Oxidoreductases/metabolism ; Plant Leaves/genetics ; Plant Leaves/metabolism ; RNA-Seq ; Promoter Regions, Genetic
Czasopismo naukowe
Tytuł:
Revealing Genetic Dynamics: scRNA-seq Unravels Modifications in Human PDL Cells across In Vivo and In Vitro Environments.
Autorzy:
Abdallah AT; Cluster of Excellence Cellular Stress Responses in Aging-Associated Diseases (CECAD), 50931 Cologne, Germany.; Institute of Medical Statistics and Computational Biology, Faculty of Medicine, University of Cologne, 50923 Cologne, Germany.; Interdisciplinary Center for Clinical Research, University Hospital RWTH, 52074 Aachen, Germany.
Peitz M; Institute of Reconstructive Neurobiology, Life and Brain Center, University Hospital Bonn, 53105 Bonn, Germany.
Konermann A; Department of Orthodontics, University Hospital Bonn, 53111 Bonn, Germany.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Apr 26; Vol. 25 (9). Date of Electronic Publication: 2024 Apr 26.
Typ publikacji:
Journal Article
MeSH Terms:
Periodontal Ligament*/cytology
Periodontal Ligament*/metabolism
Single-Cell Analysis*/methods
Humans ; Cells, Cultured ; RNA-Seq/methods ; Sequence Analysis, RNA/methods ; Male ; Female ; Gene Expression Profiling/methods ; Adult ; Transcriptome ; Single-Cell Gene Expression Analysis
Czasopismo naukowe
Tytuł:
Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data.
Autorzy:
Blumenkamp P; Bioinformatics and Systems Biology, Justus Liebig University Giessen, 35392, Giessen, Germany. .
Pfister M; Bioinformatics and Systems Biology, Justus Liebig University Giessen, 35392, Giessen, Germany.
Diedrich S; Bioinformatics and Systems Biology, Justus Liebig University Giessen, 35392, Giessen, Germany.
Brinkrolf K; Bioinformatics and Systems Biology, Justus Liebig University Giessen, 35392, Giessen, Germany.
Jaenicke S; Bioinformatics and Systems Biology, Justus Liebig University Giessen, 35392, Giessen, Germany.
Goesmann A; Bioinformatics and Systems Biology, Justus Liebig University Giessen, 35392, Giessen, Germany.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 29; Vol. 25 (1), pp. 138. Date of Electronic Publication: 2024 Mar 29.
Typ publikacji:
Journal Article
MeSH Terms:
Curare*
RNA-Seq ; Reproducibility of Results ; Sequence Analysis, RNA/methods ; Transcriptome ; Software ; High-Throughput Nucleotide Sequencing/methods ; Gene Expression Profiling/methods
Czasopismo naukowe
Tytuł:
Machine learning on alignment features for parent-of-origin classification of simulated hybrid RNA-seq.
Autorzy:
Miller JR; Department of Computer Science, Mathematics, Engineering, Shepherd University, Shepherdstown, WV, USA. .; EVOGENE, Department of Biosciences, University of Oslo, Oslo, Norway. .; Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, USA. .
Adjeroh DA; Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 12; Vol. 25 (1), pp. 109. Date of Electronic Publication: 2024 Mar 12.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Transcriptome*
RNA-Seq ; Sequence Analysis, RNA/methods ; Machine Learning
Czasopismo naukowe
Tytuł:
Phenotypic Investigation and RNA-seq of KN1 Involved in Leaf Angle Formation in Maize ( Zea mays L.).
Autorzy:
Wu Y; College of Agronomy, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou 730070, China.
Zhang Y; College of Agronomy, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou 730070, China.
Zhuang Z; College of Agronomy, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou 730070, China.
Ji X; College of Agronomy, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou 730070, China.
Bian J; College of Agronomy, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou 730070, China.
Xian J; College of Agronomy, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou 730070, China.
Wang Y; College of Agronomy, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou 730070, China.
Peng Y; College of Agronomy, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Agricultural University, Lanzhou 730070, China.; Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou 730070, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Mar 10; Vol. 25 (6). Date of Electronic Publication: 2024 Mar 10.
Typ publikacji:
Journal Article
MeSH Terms:
Zea mays*/genetics
Zea mays*/metabolism
Plant Proteins*/metabolism
RNA-Seq ; Plant Breeding ; Phenotype ; Plant Leaves/genetics ; Plant Leaves/metabolism ; Gene Expression Regulation, Plant
Czasopismo naukowe
Tytuł:
Genome-wide analysis of acid tolerance genes of Enterococcus faecalis with RNA-seq and Tn-seq.
Autorzy:
Chen Z; Department of Endodontics and Operative Dentistry, Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, China.; National Clinical Research Center for Oral Diseases, Shanghai, China.; Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, Shanghai, China.
Niu C; Department of Endodontics and Operative Dentistry, Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, China.; National Clinical Research Center for Oral Diseases, Shanghai, China.; Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, Shanghai, China.
Wei L; Department of Endodontics and Operative Dentistry, Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, China.; Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, Shanghai, China.; Nucleic acid drug Research and Development Institute, CSPC, Shanghai, China.
Huang Z; Department of Endodontics and Operative Dentistry, Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, China.; National Clinical Research Center for Oral Diseases, Shanghai, China.; Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, Shanghai, China.
Ran S; Department of Endodontics and Operative Dentistry, Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, China. .; National Clinical Research Center for Oral Diseases, Shanghai, China. .; Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, Shanghai, China. .
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Źródło:
BMC genomics [BMC Genomics] 2024 Mar 08; Vol. 25 (1), pp. 261. Date of Electronic Publication: 2024 Mar 08.
Typ publikacji:
Journal Article
MeSH Terms:
Enterococcus faecalis*/genetics
Gene Expression Profiling*
RNA-Seq ; Genome
Czasopismo naukowe
Tytuł:
Introgressions lead to reference bias in wheat RNA-seq analysis.
Autorzy:
Coombes B; Earlham Institute, Norwich, Norfolk, NR4 7UZ, UK. .
Lux T; Plant Genome and Systems Biology, Helmholtz Zentrum München, Neuherberg, Germany.
Akhunov E; Department of Plant Pathology, Kansas State University, Manhattan, KS, USA.
Hall A; Earlham Institute, Norwich, Norfolk, NR4 7UZ, UK. .
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Źródło:
BMC biology [BMC Biol] 2024 Mar 07; Vol. 22 (1), pp. 56. Date of Electronic Publication: 2024 Mar 07.
Typ publikacji:
Journal Article
MeSH Terms:
Triticum*/genetics
Transcriptome*
RNA-Seq ; Genomics ; Polyploidy
Czasopismo naukowe
Tytuł:
Screening and identification of lncRNAs in preadipocyte differentiation in sheep.
Autorzy:
Hao Z; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Jin X; Academic Animal & Veterinary Science, Qinghai University, Xining, China.
Hickford JGH; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.; Gene-Marker Laboratory, Faculty of Agriculture and Life Science, Lincoln University, Lincoln, 7647, New Zealand.
Zhou H; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.; Gene-Marker Laboratory, Faculty of Agriculture and Life Science, Lincoln University, Lincoln, 7647, New Zealand.
Wang L; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Wang J; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China. .
Luo Y; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Hu J; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Liu X; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Li S; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Li M; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Shi B; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Ren C; Gansu Key Laboratory of Herbivorous Animal Biotechnology, College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
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Źródło:
Scientific reports [Sci Rep] 2024 Mar 04; Vol. 14 (1), pp. 5260. Date of Electronic Publication: 2024 Mar 04.
Typ publikacji:
Journal Article
MeSH Terms:
RNA, Long Noncoding*/genetics
Animals ; Sheep/genetics ; Phosphatidylinositol 3-Kinases ; Mitogen-Activated Protein Kinases ; Phosphatidylinositol 3-Kinase ; RNA-Seq
Czasopismo naukowe
Tytuł:
Application of bulk segregant RNA-Seq (BSR-Seq) and allele-specific primers to study soybean powdery mildew resistance.
Autorzy:
Huang CC; Master Program for Plant Medicine, National Taiwan University, Taipei, 106319, Taiwan.
Lin CH; Taoyuan District Agricultural Research and Extension Station. Ministry of Agriculture, Taoyuan, 327005, Taiwan.
Lin YC; Department of Plant Pathology and Microbiology, National Taiwan University, Taipei, 106319, Taiwan.; Department of Ecology and Evolutionary Biology, The University of Michigan, Ann Arbor, MI, 48109, USA.
Chang HX; Master Program for Plant Medicine, National Taiwan University, Taipei, 106319, Taiwan. .; Department of Plant Pathology and Microbiology, National Taiwan University, Taipei, 106319, Taiwan. .; Center of Biotechnology, National Taiwan University, Taipei, 106319, Taiwan. .
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Źródło:
BMC plant biology [BMC Plant Biol] 2024 Mar 01; Vol. 24 (1), pp. 155. Date of Electronic Publication: 2024 Mar 01.
Typ publikacji:
Journal Article
MeSH Terms:
Glycine max*/genetics
Disease Resistance*/genetics
RNA-Seq ; Alleles ; Chromosome Mapping/methods ; Phenotype ; Erysiphe ; Plant Diseases/genetics
Czasopismo naukowe
Tytuł:
Integrated ATAC-seq and RNA-seq data analysis identifies transcription factors related to rice stripe virus infection in Oryza sativa.
Autorzy:
Li M; College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo, China.
Li J; College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo, China.
Zhang Y; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo, China.
Zhai Y; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo, China.
Chen Y; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo, China.
Lin L; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo, China.
Peng J; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo, China.
Zheng H; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo, China.
Chen J; College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo, China.
Yan F; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo, China.
Lu Y; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo, China.
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Źródło:
Molecular plant pathology [Mol Plant Pathol] 2024 Mar; Vol. 25 (3), pp. e13446.
Typ publikacji:
Journal Article
MeSH Terms:
Oryza*/genetics
Tenuivirus*/genetics
Respiratory Syncytial Virus Infections*
Animals ; Transcription Factors/genetics ; Chromatin Immunoprecipitation Sequencing ; RNA-Seq ; Chromatin ; Data Analysis
Czasopismo naukowe
Tytuł:
Single-cell insights: pioneering an integrated atlas of chromatin accessibility and transcriptomic landscapes in diabetic cardiomyopathy.
Autorzy:
Su Q; Department of Cardiology, People's Hospital of Guilin, Guilin, China.; Department of Cardiology, Jiangbin Hospital of Guangxi Zhuang Autonomous Region, Nanning, China.
Huang W; Department of Cardiology, Jiangbin Hospital of Guangxi Zhuang Autonomous Region, Nanning, China.
Huang Y; Department of Cardiology, Jiangbin Hospital of Guangxi Zhuang Autonomous Region, Nanning, China.
Dai R; Department of Cardiology, Affiliated Hospital of Guilin Medical University, Guilin, China.
Chang C; Department of Cardiology, Affiliated Hospital of Guilin Medical University, Guilin, China.
Li QY; Department of Cardiology, People's Hospital of Guilin, Guilin, China.
Liu H; Institute of Bioengineering, Biotrans Technology Co., LTD, Shanghai, China.; United New Drug Research and Development Center, Biotrans Technology Co., LTD, Changsha, China.
Li Z; College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, China.; BoYu Intelligent Health Innovation Laboratory, Hangzhou, China.
Zhao Y; Institute of Bioengineering, Biotrans Technology Co., LTD, Shanghai, China. yuxiang_.; United New Drug Research and Development Center, Biotrans Technology Co., LTD, Changsha, China. yuxiang_.
Wu Q; Senior Department of Cardiology, the Sixth Medical Centre, Chinese PLA General Hospital, Beijing, China. .
Pan DG; Department of Cardiology, People's Hospital of Guilin, Guilin, China. .
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Źródło:
Cardiovascular diabetology [Cardiovasc Diabetol] 2024 Apr 25; Vol. 23 (1), pp. 139. Date of Electronic Publication: 2024 Apr 25.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Diabetic Cardiomyopathies*/genetics
Diabetic Cardiomyopathies*/metabolism
Diabetic Cardiomyopathies*/pathology
Diabetic Cardiomyopathies*/physiopathology
Single-Cell Analysis*
Transcriptome*
Animals ; Gene Expression Profiling ; Chromatin/metabolism ; Chromatin/genetics ; Mice, Inbred C57BL ; Gene Regulatory Networks ; Chromatin Assembly and Disassembly ; Disease Models, Animal ; Male ; RNA-Seq ; Gene Expression Regulation ; Myocytes, Cardiac/metabolism ; Myocytes, Cardiac/pathology ; Fibroblasts/metabolism ; Fibroblasts/pathology ; Fibrosis ; Mice ; Endothelial Cells/metabolism ; Endothelial Cells/pathology
Czasopismo naukowe
Tytuł:
Shaoxia: a web-based interactive analysis platform for single cell RNA sequencing data.
Autorzy:
Wei W; State Key Laboratory of Oral Diseases & National Center for Stomatology & National Clinical Research Center for Oral Diseases & Research Unit of Oral Carcinogenesis and Management & Chinese Academy of Medical Sciences, West China Hospital of Stomatology, Sichuan University, No. 14, 3rd Section of Ren Min Nan Rd., Chengdu, Sichuan, 610041, China.
Xia X; State Key Laboratory of Oral Diseases & National Center for Stomatology & National Clinical Research Center for Oral Diseases & Research Unit of Oral Carcinogenesis and Management & Chinese Academy of Medical Sciences, West China Hospital of Stomatology, Sichuan University, No. 14, 3rd Section of Ren Min Nan Rd., Chengdu, Sichuan, 610041, China.
Li T; State Key Laboratory of Oral Diseases & National Center for Stomatology & National Clinical Research Center for Oral Diseases & Research Unit of Oral Carcinogenesis and Management & Chinese Academy of Medical Sciences, West China Hospital of Stomatology, Sichuan University, No. 14, 3rd Section of Ren Min Nan Rd., Chengdu, Sichuan, 610041, China.
Chen Q; Key Laboratory of Oral Biomedical Research of Zhejiang Province, Affiliated Stomatology Hospital, Zhejiang University School of Stomatology, Hangzhou, Zhejiang, 310006, China.
Feng X; State Key Laboratory of Oral Diseases & National Center for Stomatology & National Clinical Research Center for Oral Diseases & Research Unit of Oral Carcinogenesis and Management & Chinese Academy of Medical Sciences, West China Hospital of Stomatology, Sichuan University, No. 14, 3rd Section of Ren Min Nan Rd., Chengdu, Sichuan, 610041, China. .
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Źródło:
BMC genomics [BMC Genomics] 2024 Apr 24; Vol. 25 (1), pp. 402. Date of Electronic Publication: 2024 Apr 24.
Typ publikacji:
Journal Article
MeSH Terms:
Single-Cell Analysis*/methods
Software*
Sequence Analysis, RNA*/methods
Internet ; Humans ; Computational Biology/methods ; RNA-Seq/methods ; User-Computer Interface
Czasopismo naukowe
Tytuł:
RNA-Seq Bulked Segregant Analysis of an Exotic B. napus ssp. napobrassica (Rutabaga) F 2 Population Reveals Novel QTLs for Breeding Clubroot-Resistant Canola.
Autorzy:
Yu Z; Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada.
Fredua-Agyeman R; Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada.
Strelkov SE; Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada.
Hwang SF; Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Apr 23; Vol. 25 (9). Date of Electronic Publication: 2024 Apr 23.
Typ publikacji:
Journal Article
MeSH Terms:
Quantitative Trait Loci*
Brassica napus*/genetics
Brassica napus*/parasitology
Disease Resistance*/genetics
Plant Diseases*/parasitology
Plant Diseases*/genetics
Plant Breeding*
Plasmodiophorida*/physiology
Plasmodiophorida*/pathogenicity
RNA-Seq ; Chromosome Mapping ; Gene Expression Regulation, Plant ; Chromosomes, Plant/genetics
Czasopismo naukowe
Tytuł:
Single-cell RNA-seq analysis reveals the Wnt/Ca signaling pathway with inflammation, apoptosis in nucleus pulposus degeneration.
Autorzy:
Wang P; Guangzhou Red Cross Hospital, Guangzhou Red Cross Hospital of Jinan University, Guangzhou, Guangdong Province, 510220, China.; Guizhou Medical University, Guizhou Medical University, Guiyang, Guizhou Province, 550025, China.
Li Z; Department of Spinal Degeneration and Deformity Surgery, Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong Province, 524001, China.
Ye D; Guangzhou Red Cross Hospital, Guangzhou Red Cross Hospital of Jinan University, Guangzhou, Guangdong Province, 510220, China. .; Guizhou Medical University, Guizhou Medical University, Guiyang, Guizhou Province, 550025, China. .
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Źródło:
BMC musculoskeletal disorders [BMC Musculoskelet Disord] 2024 Apr 23; Vol. 25 (1), pp. 321. Date of Electronic Publication: 2024 Apr 23.
Typ publikacji:
Journal Article
MeSH Terms:
Nucleus Pulposus*/metabolism
Nucleus Pulposus*/pathology
Intervertebral Disc Degeneration*/metabolism
Intervertebral Disc Degeneration*/genetics
Intervertebral Disc Degeneration*/pathology
Apoptosis*
Wnt Signaling Pathway*/genetics
Single-Cell Analysis*
Humans ; RNA-Seq ; Male ; Middle Aged ; Female ; Inflammation/metabolism ; Inflammation/pathology ; Inflammation/genetics ; Adult ; Calcium Signaling/genetics ; Chondrocytes/metabolism ; Chondrocytes/pathology ; Transcriptome ; Wnt Proteins/genetics ; Wnt Proteins/metabolism ; Single-Cell Gene Expression Analysis
Czasopismo naukowe

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