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Wyszukujesz frazę ""RNA-seq"" wg kryterium: Temat


Tytuł :
Whole-transcriptome sequencing (RNA-seq) study of the ZFL zebrafish liver cell line after acute exposure to Cd ions.
Autorzy :
Kwok ML; School of Life Sciences, The Chinese University of Hong Kong, Sha Tin., N.T., Hong Kong.
Meng Q; School of Life Sciences, The Chinese University of Hong Kong, Sha Tin., N.T., Hong Kong.
Hu XL; School of Life Sciences, The Chinese University of Hong Kong, Sha Tin., N.T., Hong Kong.
Chung CT; School of Life Sciences, The Chinese University of Hong Kong, Sha Tin., N.T., Hong Kong.
Chan KM; School of Life Sciences, The Chinese University of Hong Kong, Sha Tin., N.T., Hong Kong. Electronic address: .
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Źródło :
Aquatic toxicology (Amsterdam, Netherlands) [Aquat Toxicol] 2020 Nov; Vol. 228, pp. 105628. Date of Electronic Publication: 2020 Sep 15.
Typ publikacji :
Journal Article
MeSH Terms :
RNA-Seq*
Cadmium/*toxicity
Environmental Exposure/*analysis
Liver/*cytology
Transcriptome/*genetics
Zebrafish/*genetics
Animals ; Apoptosis/drug effects ; Apoptosis/genetics ; Cell Cycle/drug effects ; Cell Line ; Endoplasmic Reticulum/drug effects ; Endoplasmic Reticulum/metabolism ; Gene Expression Profiling ; Gene Expression Regulation/drug effects ; Gene Ontology ; Hepatocytes/drug effects ; Ions ; Liver/drug effects ; Oxidative Stress/drug effects ; Transcriptome/drug effects ; Water Pollutants, Chemical/toxicity ; Zebrafish Proteins/genetics ; Zebrafish Proteins/metabolism
Czasopismo naukowe
Tytuł :
RNA-sequencing analysis of differential gene expression associated with arterial stiffness.
Autorzy :
Logan JG; University of Virginia, Charlottesville, USA.
Yun S; ZtoMed Inc, Bethesda, USA.
Bao Y; Department of Microbiology, Immunology, and Cancer Biology, University of Virginia, Charlottesville, USA.
Farber E; Center for Public Health Genomics, School of Medicine, University of Virginia, Charlottesville, USA.
Farber CR; Department of Public Health Sciences and Biochemistry and Molecular Genetics, Center for Public Health Genomics, University of Virginia, Charlottesville, USA.
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Źródło :
Vascular [Vascular] 2020 Oct; Vol. 28 (5), pp. 655-663. Date of Electronic Publication: 2020 May 06.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Expression Profiling*
RNA-Seq*
Transcriptome*
Aminopeptidases/*genetics
Calpain/*genetics
Interleukins/*genetics
Vascular Stiffness/*genetics
Adolescent ; Adult ; Arterial Pressure ; Carotid-Femoral Pulse Wave Velocity ; Down-Regulation ; Female ; Gene Regulatory Networks ; Humans ; Middle Aged ; Young Adult
Czasopismo naukowe
Tytuł :
RNA-seq Used to Explore circRNA Expression and Identify Key circRNAs During the DNA Synthesis Phase of Mice Liver Regeneration.
Autorzy :
Zhang J; Department of Liver Surgery and Liver Transplantation Center, West China Hospital of Sichuan University, Chengdu, P.R. China.
Xu L; Department of Liver Surgery and Liver Transplantation Center, West China Hospital of Sichuan University, Chengdu, P.R. China.
Wang P; Department of Liver Surgery and Liver Transplantation Center, West China Hospital of Sichuan University, Chengdu, P.R. China.
Zheng X; Department of Liver Surgery and Liver Transplantation Center, West China Hospital of Sichuan University, Chengdu, P.R. China.
Hu Y; Department of Liver Surgery and Liver Transplantation Center, West China Hospital of Sichuan University, Chengdu, P.R. China.
Luo J; Department of Liver Surgery and Liver Transplantation Center, West China Hospital of Sichuan University, Chengdu, P.R. China.
Zhang M; Department of Liver Surgery and Liver Transplantation Center, West China Hospital of Sichuan University, Chengdu, P.R. China.
Xu M; Department of Liver Surgery and Liver Transplantation Center, West China Hospital of Sichuan University, Chengdu, P.R. China.
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Źródło :
DNA and cell biology [DNA Cell Biol] 2020 Nov; Vol. 39 (11), pp. 2059-2076. Date of Electronic Publication: 2020 Sep 22.
Typ publikacji :
Journal Article
MeSH Terms :
RNA-Seq*
DNA/*biosynthesis
Liver Regeneration/*genetics
RNA, Circular/*genetics
Animals ; DNA/genetics ; DNA Replication/genetics ; Gene Expression Profiling ; Gene Expression Regulation, Developmental/genetics ; Gene Ontology ; Humans ; Mice ; MicroRNAs/genetics
Czasopismo naukowe
Tytuł :
A strategy to incorporate prior knowledge into correlation network cutoff selection.
Autorzy :
Benedetti E; Institute of Computational Biology, Helmholtz Center Munich - German Research Center for Environmental Health, 85764, Neuherberg, Germany.; Department of Physiology and Biophysics, Weill Cornell Medicine, Institute for Computational Biomedicine, Englander Institute for Precision Medicine, New York, NY, 10021, USA.
Pučić-Baković M; Genos Glycoscience Research Laboratory, 10000, Zagreb, Croatia.
Keser T; Faculty of Pharmacy and Biochemistry, University of Zagreb, 10000, Zagreb, Croatia.
Gerstner N; Institute of Computational Biology, Helmholtz Center Munich - German Research Center for Environmental Health, 85764, Neuherberg, Germany.; Max Planck Institute for Psychiatry, 80804, Munich, Germany.
Büyüközkan M; Institute of Computational Biology, Helmholtz Center Munich - German Research Center for Environmental Health, 85764, Neuherberg, Germany.; Department of Physiology and Biophysics, Weill Cornell Medicine, Institute for Computational Biomedicine, Englander Institute for Precision Medicine, New York, NY, 10021, USA.
Štambuk T; Genos Glycoscience Research Laboratory, 10000, Zagreb, Croatia.
Selman MHJ; Leiden University Medical Center, 2333 ZA, Leiden, The Netherlands.
Rudan I; Usher Institute of Population Health Sciences and Informatics, University of Edinburgh, EH8 9AG, Edinburgh, UK.
Polašek O; University of Split School of Medicine, 21000, Split, Croatia.; Gen-info Ltd., 10000, Zagreb, Croatia.
Hayward C; Medical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, EH4 2XU, Edinburgh, UK.
Al-Amin H; Department of Psychiatry, Weill Cornell Medicine in Qatar, Doha, Qatar.
Suhre K; Department of Physiology and Biophysics, Weill Cornell Medical College in Qatar, Education City, Doha, Qatar.
Kastenmüller G; Institute of Computational Biology, Helmholtz Center Munich - German Research Center for Environmental Health, 85764, Neuherberg, Germany.
Lauc G; Genos Glycoscience Research Laboratory, 10000, Zagreb, Croatia.; Faculty of Pharmacy and Biochemistry, University of Zagreb, 10000, Zagreb, Croatia.
Krumsiek J; Institute of Computational Biology, Helmholtz Center Munich - German Research Center for Environmental Health, 85764, Neuherberg, Germany. .; Department of Physiology and Biophysics, Weill Cornell Medicine, Institute for Computational Biomedicine, Englander Institute for Precision Medicine, New York, NY, 10021, USA. .
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Źródło :
Nature communications [Nat Commun] 2020 Oct 14; Vol. 11 (1), pp. 5153. Date of Electronic Publication: 2020 Oct 14.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Algorithms*
Glycomics/*methods
Metabolomics/*methods
RNA-Seq/*methods
Data Interpretation, Statistical ; Glycomics/statistics & numerical data ; Humans ; Immunoglobulin G/metabolism ; Metabolomics/statistics & numerical data ; RNA-Seq/statistics & numerical data
Czasopismo naukowe
Tytuł :
SpaGE: Spatial Gene Enhancement using scRNA-seq.
Autorzy :
Abdelaal T; Delft Bioinformatics Lab, Delft University of Technology, Delft 2628XE, The Netherlands.; Leiden Computational Biology Center, Leiden University Medical Center, Leiden 2333ZC, The Netherlands.
Mourragui S; Delft Bioinformatics Lab, Delft University of Technology, Delft 2628XE, The Netherlands.; Computational Cancer Biology, Division of Molecular Carcinogenesis, Oncode Institute, the Netherlands Cancer Institute, Amsterdam 1066 CX, The Netherlands.
Mahfouz A; Delft Bioinformatics Lab, Delft University of Technology, Delft 2628XE, The Netherlands.; Leiden Computational Biology Center, Leiden University Medical Center, Leiden 2333ZC, The Netherlands.; Department of Human Genetics, Leiden University Medical Center, Leiden 2333ZC, The Netherlands.
Reinders MJT; Delft Bioinformatics Lab, Delft University of Technology, Delft 2628XE, The Netherlands.; Leiden Computational Biology Center, Leiden University Medical Center, Leiden 2333ZC, The Netherlands.; Department of Human Genetics, Leiden University Medical Center, Leiden 2333ZC, The Netherlands.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Oct 09; Vol. 48 (18), pp. e107.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
RNA-Seq*
Single-Cell Analysis*
Software*
Transcriptome*
Animals ; Databases, Genetic ; Datasets as Topic ; Mice
Czasopismo naukowe
Tytuł :
Nuclei Isolation from Fresh Frozen Brain Tumors for Single-Nucleus RNA-seq and ATAC-seq.
Autorzy :
Narayanan A; Neurology Clinic and National Center for Tumor Diseases, University Hospital Heidelberg.
Blanco-Carmona E; Bioinformatics and Omics Data Analytics, German Cancer Research Center (DKFZ).
Demirdizen E; Neurology Clinic and National Center for Tumor Diseases, University Hospital Heidelberg.
Sun X; Neurology Clinic and National Center for Tumor Diseases, University Hospital Heidelberg; Clinical Cooperation Unit Neurooncology, German Cancer Research Center (DKFZ).
Herold-Mende C; Division of Experimental Neurosurgery, Department of Neurosurgery, University of Heidelberg, INF 400, Heidelberg, Germany.
Schlesner M; Bioinformatics and Omics Data Analytics, German Cancer Research Center (DKFZ).
Turcan S; Neurology Clinic and National Center for Tumor Diseases, University Hospital Heidelberg; .
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Źródło :
Journal of visualized experiments : JoVE [J Vis Exp] 2020 Aug 25 (162). Date of Electronic Publication: 2020 Aug 25.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Video-Audio Media
MeSH Terms :
Freezing*
High-Throughput Nucleotide Sequencing*
RNA-Seq*
Brain Neoplasms/*pathology
Cell Nucleus/*metabolism
Chromatin/*metabolism
Transposases/*metabolism
Centrifugation ; Dissection ; Flow Cytometry ; Glioma/pathology ; Humans ; RNA, Small Nuclear/genetics ; RNA, Small Nuclear/metabolism ; Transposases/genetics
Czasopismo naukowe
Tytuł :
scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data.
Autorzy :
Choi JH; Department of Physiology, Ajou University School of Medicine, 164 Worldcup-ro, Yeongtong-gu, Suwon, 16499, Republic of Korea.; Department of Biomedical Science, Graduate School, Ajou University, Suwon, Republic of Korea.
In Kim H; Department of Physiology, Ajou University School of Medicine, 164 Worldcup-ro, Yeongtong-gu, Suwon, 16499, Republic of Korea.; Department of Biomedical Science, Graduate School, Ajou University, Suwon, Republic of Korea.
Woo HG; Department of Physiology, Ajou University School of Medicine, 164 Worldcup-ro, Yeongtong-gu, Suwon, 16499, Republic of Korea. .; Department of Biomedical Science, Graduate School, Ajou University, Suwon, Republic of Korea. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2020 Aug 04; Vol. 21 (1), pp. 342. Date of Electronic Publication: 2020 Aug 04.
Typ publikacji :
Journal Article
MeSH Terms :
RNA-Seq*
Software*
Single-Cell Analysis/*methods
Base Sequence ; Data Analysis ; Databases, Genetic ; Humans
Czasopismo naukowe
Tytuł :
A practical application of generative adversarial networks for RNA-seq analysis to predict the molecular progress of Alzheimer's disease.
Autorzy :
Park J; Dementia Research Group, Korea Brain Research Institute (KBRI), Daegu, Korea.; School of Electronics Engineering, Kyungpook National University, Daegu, Korea.
Kim H; Dementia Research Group, Korea Brain Research Institute (KBRI), Daegu, Korea.
Kim J; Dementia Research Group, Korea Brain Research Institute (KBRI), Daegu, Korea.
Cheon M; Dementia Research Group, Korea Brain Research Institute (KBRI), Daegu, Korea.
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Źródło :
PLoS computational biology [PLoS Comput Biol] 2020 Jul 24; Vol. 16 (7), pp. e1008099. Date of Electronic Publication: 2020 Jul 24 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
RNA-Seq*
Alzheimer Disease/*physiopathology
Algorithms ; Alzheimer Disease/genetics ; Amyloid beta-Protein Precursor/genetics ; Animals ; Brain/metabolism ; Cerebral Cortex/metabolism ; Cholesterol/metabolism ; Cluster Analysis ; Deep Learning ; Disease Models, Animal ; Disease Progression ; Humans ; Inflammation ; Mice ; Models, Genetic ; RNA, Messenger/metabolism ; Synapses/metabolism ; Temporal Lobe/metabolism ; Whole Exome Sequencing
Czasopismo naukowe
Tytuł :
A robust nonlinear low-dimensional manifold for single cell RNA-seq data.
Autorzy :
Verma A; Chemical and Biological Engineering, Princeton University, 50-70 Olden Street, Princeton, 08540, NJ, USA.
Engelhardt BE; Computer Science, Center for Statistics and Machine Learning, 35 Olden Street, Princeton, 08540, NJ, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2020 Jul 21; Vol. 21 (1), pp. 324. Date of Electronic Publication: 2020 Jul 21.
Typ publikacji :
Journal Article
MeSH Terms :
Nonlinear Dynamics*
RNA-Seq*
Single-Cell Analysis/*methods
Blood Cells/metabolism ; Gene Expression Regulation ; Humans ; Models, Genetic ; Neurons/metabolism ; Normal Distribution ; Principal Component Analysis ; Time Factors
Czasopismo naukowe
Tytuł :
PolyA-miner: accurate assessment of differential alternative poly-adenylation from 3'Seq data using vector projections and non-negative matrix factorization.
Autorzy :
Yalamanchili HK; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Jan and Dan Duncan Neurological Research Institute, Texas Children's Hospital, Houston, TX 77030, USA.
Alcott CE; Jan and Dan Duncan Neurological Research Institute, Texas Children's Hospital, Houston, TX 77030, USA.; Program in Developmental Biology, Baylor College of Medicine, Houston, TX 77030, USA.; Medical Scientist Training Program, Baylor College of Medicine, Houston, TX 77030, USA.
Ji P; Department of Biochemistry & Molecular Biology, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Wagner EJ; Department of Biochemistry & Molecular Biology, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Zoghbi HY; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Jan and Dan Duncan Neurological Research Institute, Texas Children's Hospital, Houston, TX 77030, USA.; Howard Hughes Medical Institute, Houston, TX 77030, USA.; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA.
Liu Z; Jan and Dan Duncan Neurological Research Institute, Texas Children's Hospital, Houston, TX 77030, USA.; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Jul 09; Vol. 48 (12), pp. e69.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Algorithms*
Polyadenylation*
RNA-Seq/*methods
3' Untranslated Regions ; Animals ; Humans ; Mice ; RNA-Seq/standards ; Reference Standards ; Software
Czasopismo naukowe
Tytuł :
IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq.
Autorzy :
Ma A; Department of Biomedical Informatics, College of Medicine, The Ohio State University, Columbus, OH 43210, USA.
Wang C; Department of Biomedical Informatics, College of Medicine, The Ohio State University, Columbus, OH 43210, USA.
Chang Y; Department of Biomedical Informatics, College of Medicine, The Ohio State University, Columbus, OH 43210, USA.
Brennan FH; Department of Neuroscience, Center for Brain and Spinal Cord Repair, Belford Center for Spinal Cord Injury, The Ohio State University Wexner Medical Center, Columbus, OH 43210, USA.
McDermaid A; Imagenetics, Sanford Health, Sioux Falls, SD 57104, USA.; Department of Internal Medicine, Sanford School of Medicine, University of South Dakota, Vermillion, SD 57069, USA.
Liu B; School of Mathematics, Shandong University, Jinan 250100, China.
Zhang C; Department of Medical & Molecular Genetics, Indiana University, School of Medicine, Indianapolis, IN 46202, USA.
Popovich PG; Department of Neuroscience, Center for Brain and Spinal Cord Repair, Belford Center for Spinal Cord Injury, The Ohio State University Wexner Medical Center, Columbus, OH 43210, USA.
Ma Q; Department of Biomedical Informatics, College of Medicine, The Ohio State University, Columbus, OH 43210, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Jul 02; Vol. 48 (W1), pp. W275-W286.
Typ publikacji :
Evaluation Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
RNA-Seq*
Regulon*
Single-Cell Analysis*
Software*
Animals ; Brain/metabolism ; Cluster Analysis ; Mice
Czasopismo naukowe
Tytuł :
Tools for the analysis of high-dimensional single-cell RNA sequencing data.
Autorzy :
Wu Y; Department of Bioengineering, University of California at San Diego, La Jolla, CA, USA.
Zhang K; Department of Bioengineering, University of California at San Diego, La Jolla, CA, USA. .
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Źródło :
Nature reviews. Nephrology [Nat Rev Nephrol] 2020 Jul; Vol. 16 (7), pp. 408-421. Date of Electronic Publication: 2020 Mar 27.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Review
MeSH Terms :
Data Analysis*
Data Visualization*
Datasets as Topic*
RNA-Seq*
Single-Cell Analysis*
Electronic Data Processing ; Gene Expression Profiling ; High-Throughput Nucleotide Sequencing ; Humans ; Sequence Analysis, RNA ; Software ; Workflow
Czasopismo naukowe
Tytuł :
The liver as an immunological barrier redefined by single-cell analysis.
Autorzy :
Stamataki Z; Institute of Immunology and Immunotherapy, Centre for Liver and Gastrointestinal Research, University of Birmingham, Birmingham, UK.; NIHR Birmingham Liver Biomedical Research Centre, University Hospitals Birmingham NHS Foundation Trust, Birmingham, UK.
Swadling L; Division of Infection & Immunity, University College London, London, UK.
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Źródło :
Immunology [Immunology] 2020 Jun; Vol. 160 (2), pp. 157-170. Date of Electronic Publication: 2020 Apr 15.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
RNA-Seq*
Single-Cell Analysis*
Liver/*immunology
Transcriptome/*immunology
Animals ; Antigens/immunology ; Gene Expression Regulation/immunology ; Host-Pathogen Interactions/immunology ; Humans ; Liver/metabolism ; Mice
Czasopismo naukowe
Tytuł :
Data-based RNA-seq simulations by binomial thinning.
Autorzy :
Gerard D; Department of Mathematics and Statistics, American University, Massachusetts Ave NW, Washington, DC, 20016, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2020 May 24; Vol. 21 (1), pp. 206. Date of Electronic Publication: 2020 May 24.
Typ publikacji :
Journal Article
MeSH Terms :
Computer Simulation*
Databases, Genetic*
RNA-Seq*
Algorithms ; Gene Expression Profiling ; Humans ; Principal Component Analysis ; Software ; Whole Exome Sequencing
Czasopismo naukowe
Tytuł :
Time-course RNA-seq analysis provides an improved understanding of gene regulation during the formation of nodule-like structures in rice.
Autorzy :
Thomas J; Department of Biology, University of Central Arkansas, Conway, AR, 72035, USA.
Hiltenbrand R; Department of Biology, University of Central Arkansas, Conway, AR, 72035, USA.
Bowman MJ; Bioinformatics and Biostatistics Core, Van Andel Research Institute, Grand Rapids, MI, 49503, USA.
Kim HR; Department of Biology, University of Central Arkansas, Conway, AR, 72035, USA.
Winn ME; Bioinformatics and Biostatistics Core, Van Andel Research Institute, Grand Rapids, MI, 49503, USA.
Mukherjee A; Department of Biology, University of Central Arkansas, Conway, AR, 72035, USA. .
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Źródło :
Plant molecular biology [Plant Mol Biol] 2020 May; Vol. 103 (1-2), pp. 113-128. Date of Electronic Publication: 2020 Feb 21.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Expression Regulation, Plant*
RNA, Plant*
RNA-Seq*
Oryza/*genetics
Datasets as Topic ; Gene Expression Profiling ; Gene Ontology ; Medicago truncatula/genetics ; Oryza/anatomy & histology ; Oryza/drug effects ; Plant Growth Regulators/pharmacology ; Plant Proteins/genetics ; Plant Roots/anatomy & histology ; Plant Roots/drug effects ; Plant Roots/genetics ; Protein Kinases/genetics ; Transcription Factors/metabolism ; Transcriptome
Czasopismo naukowe
Tytuł :
RNA-seq based transcriptome analysis of EHMT2 functions in breast cancer.
Autorzy :
Kim K; Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea.
Ryu TY; Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea.
Ryu JW; Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea.
Han TS; Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea.
Jung CR; Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea; Department of Functional Genomics, Korea University of Science and Technology, Daejeon, 34316, Republic of Korea.
Son MY; Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea; Department of Functional Genomics, Korea University of Science and Technology, Daejeon, 34316, Republic of Korea.
Kim DS; Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea; Department of Functional Genomics, Korea University of Science and Technology, Daejeon, 34316, Republic of Korea.
Cho HS; Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea; Department of Functional Genomics, Korea University of Science and Technology, Daejeon, 34316, Republic of Korea. Electronic address: .
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Źródło :
Biochemical and biophysical research communications [Biochem Biophys Res Commun] 2020 Apr 09; Vol. 524 (3), pp. 672-676. Date of Electronic Publication: 2020 Feb 04.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Profiling*
RNA-Seq*
Histocompatibility Antigens/*metabolism
Histone-Lysine N-Methyltransferase/*metabolism
Triple Negative Breast Neoplasms/*genetics
Apoptosis/genetics ; Cell Cycle/genetics ; Cell Line, Tumor ; Cell Movement/genetics ; Cell Proliferation/genetics ; DNA Repair/genetics ; Female ; Gene Expression Regulation, Neoplastic ; Gene Knockdown Techniques ; Histocompatibility Antigens/genetics ; Histone-Lysine N-Methyltransferase/genetics ; Humans ; Neoplasm Invasiveness
Czasopismo naukowe
Tytuł :
The combination of WGS and RNA-Seq is superior to conventional diagnostic tests in multiple myeloma: Ready for prime time?
Autorzy :
Höllein A; MLL Munich Leukemia Laboratory, Munich, Germany.
Twardziok SO; MLL Munich Leukemia Laboratory, Munich, Germany.
Walter W; MLL Munich Leukemia Laboratory, Munich, Germany.
Hutter S; MLL Munich Leukemia Laboratory, Munich, Germany.
Baer C; MLL Munich Leukemia Laboratory, Munich, Germany.
Hernandez-Sanchez JM; MLL Munich Leukemia Laboratory, Munich, Germany; Centro de Investigación del Cáncer (Universidad de Salamanca-CSIC) Campus Universitario Miguel de Unamuno, Salamanca, Spain.
Meggendorfer M; MLL Munich Leukemia Laboratory, Munich, Germany.
Haferlach T; MLL Munich Leukemia Laboratory, Munich, Germany.
Kern W; MLL Munich Leukemia Laboratory, Munich, Germany.
Haferlach C; MLL Munich Leukemia Laboratory, Munich, Germany. Electronic address: .
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Źródło :
Cancer genetics [Cancer Genet] 2020 Apr; Vol. 242, pp. 15-24. Date of Electronic Publication: 2020 Jan 11.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Validation Study
MeSH Terms :
RNA-Seq*
Whole Genome Sequencing*
Multiple Myeloma/*diagnosis
Adult ; Aged ; Aged, 80 and over ; Algorithms ; Bone Marrow/pathology ; DNA Copy Number Variations ; Diagnostic Tests, Routine ; Female ; Gene Expression Profiling ; Humans ; Immunoglobulin Heavy Chains/genetics ; In Situ Hybridization, Fluorescence ; Male ; Middle Aged ; Multiple Myeloma/genetics ; Multiple Myeloma/pathology ; Risk Assessment ; Sequence Deletion ; Syndecan-1/genetics ; Translocation, Genetic
Czasopismo naukowe
Tytuł :
Unravelling the virome in birch: RNA-Seq reveals a complex of known and novel viruses.
Autorzy :
Rumbou A; Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.
Candresse T; UMR 1332, Biologie du Fruit et Pathologie, INRA, Univ. Bordeaux, CS, Villenave d'Ornon, Bordeaux, France.
Marais A; UMR 1332, Biologie du Fruit et Pathologie, INRA, Univ. Bordeaux, CS, Villenave d'Ornon, Bordeaux, France.
Svanella-Dumas L; UMR 1332, Biologie du Fruit et Pathologie, INRA, Univ. Bordeaux, CS, Villenave d'Ornon, Bordeaux, France.
Landgraf M; Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.
von Bargen S; Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.
Büttner C; Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.
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Źródło :
PloS one [PLoS One] 2020 Jun 26; Vol. 15 (6), pp. e0221834. Date of Electronic Publication: 2020 Jun 26 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
RNA-Seq*
Betula/*virology
Plant Viruses/*genetics
Metagenomics ; Phylogeny ; Plant Viruses/physiology
Czasopismo naukowe
Tytuł :
Effect of bovine leukemia virus (BLV) infection on bovine mammary epithelial cells RNA-seq transcriptome profile.
Autorzy :
Cuesta LM; Virology, SAMP Department, Centro de Investigación Veterinaria de Tandil (CIVETAN), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Tandil, Buenos Aires, Argentina.
Liron JP; Pharmacology, FISFARVET Department, Centro de Investigación Veterinaria de Tandil (CIVETAN), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Tandil, Buenos Aires, Argentina.
Nieto Farias MV; Virology, SAMP Department, Centro de Investigación Veterinaria de Tandil (CIVETAN), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Tandil, Buenos Aires, Argentina.
Dolcini GL; Virology, SAMP Department, Centro de Investigación Veterinaria de Tandil (CIVETAN), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Tandil, Buenos Aires, Argentina.
Ceriani MC; Virology, SAMP Department, Centro de Investigación Veterinaria de Tandil (CIVETAN), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Tandil, Buenos Aires, Argentina.
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Źródło :
PloS one [PLoS One] 2020 Jun 24; Vol. 15 (6), pp. e0234939. Date of Electronic Publication: 2020 Jun 24 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
RNA-Seq*
Enzootic Bovine Leukosis/*genetics
Epithelial Cells/*metabolism
Epithelial Cells/*virology
Leukemia Virus, Bovine/*physiology
Mammary Glands, Animal/*pathology
Transcriptome/*genetics
Animals ; Cattle ; Cell Line ; Cluster Analysis ; Female ; Gene Expression Regulation ; Genome ; Principal Component Analysis
Czasopismo naukowe

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