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Wyszukujesz frazę ""Repetitive Sequences, Nucleic Acid"" wg kryterium: Temat


Tytuł :
IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences.
Autorzy :
Alamro H; Department of Informatics, King's College London, 30 Aldwych, London, UK.; Department of Information Systems, Princess Nourah bint Abdulrahman University, Riyadh, Kingdom of Saudi Arabia.
Alzamel M; Department of Informatics, King's College London, 30 Aldwych, London, UK.; Computer Science Department, King Saud University, Riyadh, Kingdom of Saudi Arabia.
Iliopoulos CS; Department of Informatics, King's College London, 30 Aldwych, London, UK.
Pissis SP; Centrum Wiskunde & Informatica, Amsterdam, The Netherlands. .; Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. .
Watts S; Department of Informatics, King's College London, 30 Aldwych, London, UK.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Feb 06; Vol. 22 (1), pp. 51. Date of Electronic Publication: 2021 Feb 06.
Typ publikacji :
Journal Article
MeSH Terms :
Genome*
Prokaryotic Cells*
Repetitive Sequences, Nucleic Acid*/genetics
Base Sequence ; Inverted Repeat Sequences
Czasopismo naukowe
Tytuł :
Marek's Disease Virus Requires Both Copies of the Inverted Repeat Regions for Efficient In Vivo Replication and Pathogenesis.
Autorzy :
Vychodil T; Institut für Virologie, Freie Universität Berlin, Berlin, Germany.
Conradie AM; Institut für Virologie, Freie Universität Berlin, Berlin, Germany.
Trimpert J; Institut für Virologie, Freie Universität Berlin, Berlin, Germany.
Aswad A; Institut für Virologie, Freie Universität Berlin, Berlin, Germany.
Bertzbach LD; Institut für Virologie, Freie Universität Berlin, Berlin, Germany .
Kaufer BB; Institut für Virologie, Freie Universität Berlin, Berlin, Germany .
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Źródło :
Journal of virology [J Virol] 2021 Jan 13; Vol. 95 (3). Date of Electronic Publication: 2021 Jan 13 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Repetitive Sequences, Nucleic Acid*
Sequence Deletion*
Virus Replication*
Herpesvirus 2, Gallid/*genetics
Herpesvirus 2, Gallid/*pathogenicity
Marek Disease/*virology
Neoplasms/*virology
Animals ; Chickens ; Genome ; Marek Disease/genetics ; Marek Disease/pathology ; Mutation ; Neoplasms/genetics ; Neoplasms/pathology
Czasopismo naukowe
Tytuł :
Targeted Integration of Complex Genetic Elements at Multi-Copy Loci by Golden Gate Assembly.
Autorzy :
Zhu Y; College of Life Sciences, Capital Normal University, Beijing, China.
Cao L; College of Life Sciences, Capital Normal University, Beijing, China. .
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Źródło :
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2021; Vol. 2196, pp. 143-151.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Targeting*
Genetic Loci*
Repetitive Sequences, Nucleic Acid*
Genetic Vectors/*genetics
Cloning, Molecular ; Gene Dosage ; Mutagenesis, Site-Directed ; Recombination, Genetic ; Saccharomyces cerevisiae/genetics ; Transformation, Genetic
Czasopismo naukowe
Tytuł :
The 206 kbp mitochondrial genome of Phanerochaete carnosa reveals dynamics of introns, accumulation of repeat sequences and plasmid-derived genes.
Autorzy :
Wang X; College of Life Sciences, Henan Agricultural University, Zhengzhou, Henan 450002, China.
Song A; College of Life Sciences, Henan Agricultural University, Zhengzhou, Henan 450002, China.
Wang F; College of Life Sciences, Henan Agricultural University, Zhengzhou, Henan 450002, China.
Chen M; College of Life Sciences, Henan Agricultural University, Zhengzhou, Henan 450002, China.
Li X; College of Life Sciences, Henan Agricultural University, Zhengzhou, Henan 450002, China.
Li Q; College of Pharmacy and Biological Engineering, Chengdu University, Chengdu, Sichuan 610106, China. Electronic address: .
Liu N; College of Life Sciences, Henan Agricultural University, Zhengzhou, Henan 450002, China. Electronic address: .
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Źródło :
International journal of biological macromolecules [Int J Biol Macromol] 2020 Nov 01; Vol. 162, pp. 209-219. Date of Electronic Publication: 2020 Jun 18.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Mitochondrial*
Introns*
Repetitive Sequences, Nucleic Acid*
Phanerochaete/*genetics
Codon Usage ; Cyclooxygenase 1/genetics ; Evolution, Molecular ; Gene Order ; Gene Rearrangement ; Genes, Mitochondrial ; Genomics ; High-Throughput Nucleotide Sequencing ; Phylogeny ; Plasmids/genetics ; Polyporales/genetics
SCR Organism :
Phanerochaete carnosa; Phlebia radiata
Czasopismo naukowe
Tytuł :
The RNA exosome complex degrades expanded hexanucleotide repeat RNA in C9orf72 FTLD/ALS.
Autorzy :
Kawabe Y; Psychiatry, Graduate School of Medicine, Osaka University, Osaka, Japan.
Mori K; Psychiatry, Graduate School of Medicine, Osaka University, Osaka, Japan.
Yamashita T; Psychiatry, Graduate School of Medicine, Osaka University, Osaka, Japan.
Gotoh S; Psychiatry, Graduate School of Medicine, Osaka University, Osaka, Japan.
Ikeda M; Psychiatry, Graduate School of Medicine, Osaka University, Osaka, Japan.
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Źródło :
The EMBO journal [EMBO J] 2020 Oct 01; Vol. 39 (19), pp. e102700. Date of Electronic Publication: 2020 Aug 24.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
RNA Stability*
Repetitive Sequences, Nucleic Acid*
Amyotrophic Lateral Sclerosis/*metabolism
C9orf72 Protein/*metabolism
Exoribonucleases/*metabolism
Exosome Multienzyme Ribonuclease Complex/*metabolism
Frontotemporal Lobar Degeneration/*metabolism
RNA/*metabolism
Amyotrophic Lateral Sclerosis/genetics ; C9orf72 Protein/genetics ; Exoribonucleases/genetics ; Exosome Multienzyme Ribonuclease Complex/genetics ; Frontotemporal Lobar Degeneration/genetics ; HeLa Cells ; Humans ; RNA/genetics
Czasopismo naukowe
Tytuł :
Consequence of Paradigm Shift with Repeat Landscapes in Reptiles: Powerful Facilitators of Chromosomal Rearrangements for Diversity and Evolution.
Autorzy :
Ahmad SF; Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Department of Genetics, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Chatuchak, Bangkok 10900, Thailand.; Special Research Unit for Wildlife Genomics (SRUWG), Department of Forest Biology, Faculty of Forestry, Kasetsart University, 50 Ngamwongwan, Chatuchak, Bangkok 10900, Thailand.
Singchat W; Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Department of Genetics, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Chatuchak, Bangkok 10900, Thailand.; Special Research Unit for Wildlife Genomics (SRUWG), Department of Forest Biology, Faculty of Forestry, Kasetsart University, 50 Ngamwongwan, Chatuchak, Bangkok 10900, Thailand.
Jehangir M; Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Department of Genetics, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Chatuchak, Bangkok 10900, Thailand.; Integrative Genomics Lab-LGI, Department of Structural and Functional Biology, Institute of Bioscience at Botucatu, São Paulo State University (UNESP), Botucatu 18618-689, Brazil.
Panthum T; Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Department of Genetics, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Chatuchak, Bangkok 10900, Thailand.; Special Research Unit for Wildlife Genomics (SRUWG), Department of Forest Biology, Faculty of Forestry, Kasetsart University, 50 Ngamwongwan, Chatuchak, Bangkok 10900, Thailand.
Srikulnath K; Laboratory of Animal Cytogenetics and Comparative Genomics (ACCG), Department of Genetics, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Chatuchak, Bangkok 10900, Thailand.; Special Research Unit for Wildlife Genomics (SRUWG), Department of Forest Biology, Faculty of Forestry, Kasetsart University, 50 Ngamwongwan, Chatuchak, Bangkok 10900, Thailand.; Center for Advanced Studies in Tropical Natural Resources, National Research University-Kasetsart University, Kasetsart University, Bangkok 10900, Thailand.; Center of Excellence on Agricultural Biotechnology (AG-BIO/PERDO-CHE), Bangkok 10900, Thailand.; Omics Center for Agriculture, Bioresources, Food and Health, Kasetsart University (OmiKU), Bangkok 10900, Thailand.; Amphibian Research Center, Hiroshima University, 1-3-1, Kagamiyama, Higashihiroshima 739-8526, Japan.
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Źródło :
Genes [Genes (Basel)] 2020 Jul 21; Vol. 11 (7). Date of Electronic Publication: 2020 Jul 21.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Evolution, Molecular*
Repetitive Sequences, Nucleic Acid*
Reptiles/*genetics
Animals ; Genomic Structural Variation ; Karyotype
Czasopismo naukowe
Tytuł :
Comparative analyses of DNA repeats and identification of a novel Fesreba centromeric element in fescues and ryegrasses.
Autorzy :
Zwyrtková J; Institute of Experimental Botany, Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-77900, Olomouc, Czech Republic.
Němečková A; Institute of Experimental Botany, Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-77900, Olomouc, Czech Republic.
Čížková J; Institute of Experimental Botany, Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-77900, Olomouc, Czech Republic.
Holušová K; Institute of Experimental Botany, Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-77900, Olomouc, Czech Republic.
Kapustová V; Institute of Experimental Botany, Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-77900, Olomouc, Czech Republic.
Svačina R; Institute of Experimental Botany, Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-77900, Olomouc, Czech Republic.
Kopecký D; Institute of Experimental Botany, Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-77900, Olomouc, Czech Republic.
Till BJ; Centro de Genómica Nutricional Agroacuícola, Las Heras 350, Temuco, Chile.
Doležel J; Institute of Experimental Botany, Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-77900, Olomouc, Czech Republic.
Hřibová E; Institute of Experimental Botany, Czech Academy of Sciences, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-77900, Olomouc, Czech Republic. .
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Źródło :
BMC plant biology [BMC Plant Biol] 2020 Jun 17; Vol. 20 (1), pp. 280. Date of Electronic Publication: 2020 Jun 17.
Typ publikacji :
Journal Article
MeSH Terms :
Chromosomes, Plant*
Repetitive Sequences, Nucleic Acid*
Festuca/*genetics
Genome, Plant/*genetics
Lolium/*genetics
Centromere/genetics
Czasopismo naukowe
Tytuł :
RNA G-Quadruplexes Facilitate RNA Accumulation in G-Rich Repeat Expansions.
Autorzy :
Teng Y; Frontier Institute for Biomolecular Engineering Research (FIBER), Konan University, 17-1-20 minatojima-minamimachi, Kobe 650-0047, Japan.; School of Pharmacy, Changchun University of Chinese Medicine, 1035 Boshuo Road, Changchun, Jilin 130117, China.
Tateishi-Karimata H; Frontier Institute for Biomolecular Engineering Research (FIBER), Konan University, 17-1-20 minatojima-minamimachi, Kobe 650-0047, Japan.
Sugimoto N; Frontier Institute for Biomolecular Engineering Research (FIBER), Konan University, 17-1-20 minatojima-minamimachi, Kobe 650-0047, Japan.; Graduate School of Frontiers of Innovative Research in Science and Technology (FIRST), Konan University, Kobe 650-0047, Japan.
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Źródło :
Biochemistry [Biochemistry] 2020 Jun 02; Vol. 59 (21), pp. 1972-1980. Date of Electronic Publication: 2020 Apr 24.
Typ publikacji :
Journal Article
MeSH Terms :
G-Quadruplexes*
Repetitive Sequences, Nucleic Acid*
Guanine/*metabolism
RNA/*metabolism
Guanine/chemistry ; Humans ; Microscopy, Fluorescence ; Optical Imaging ; RNA/chemistry ; Tumor Cells, Cultured
Czasopismo naukowe
Tytuł :
Experimental manipulation of selfish genetic elements links genes to microbial community function.
Autorzy :
Quistad SD; Laboratoire de Génétique de l'Evolution, Chemistry, Biology and Innovation (CBI) UMR8231, ESPCI Paris, CNRS, PSL Research University, 10 rue Vauquelin, Paris, France.
Doulcier G; Laboratoire de Génétique de l'Evolution, Chemistry, Biology and Innovation (CBI) UMR8231, ESPCI Paris, CNRS, PSL Research University, 10 rue Vauquelin, Paris, France.
Rainey PB; Laboratoire de Génétique de l'Evolution, Chemistry, Biology and Innovation (CBI) UMR8231, ESPCI Paris, CNRS, PSL Research University, 10 rue Vauquelin, Paris, France.; Department of Microbial Population Biology, Max Planck Institute for Evolutionary Biology, Plön 24306, Germany.
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Źródło :
Philosophical transactions of the Royal Society of London. Series B, Biological sciences [Philos Trans R Soc Lond B Biol Sci] 2020 May 11; Vol. 375 (1798), pp. 20190681. Date of Electronic Publication: 2020 Mar 23.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Repetitive Sequences, Nucleic Acid*
Soil Microbiology*
Bacteria/*genetics
Microbiota/*genetics
Metagenome ; Metagenomics
Czasopismo naukowe
Tytuł :
Characterization of a novel theta-type plasmid pSM409 of Enterococcus faecium RME isolated from raw milk.
Autorzy :
Kazi TA; Department of Botany, Visva-Bharati University, Santiniketan 731235, West Bengal, India.
Mitra S; Department of Botany, Visva-Bharati University, Santiniketan 731235, West Bengal, India.
Mukhopadhyay BC; Department of Botany, Visva-Bharati University, Santiniketan 731235, West Bengal, India.
Mandal S; Laboratory of Molecular Bacteriology, Department of Microbiology, University of Calcutta, 35, Ballygunge Circular Road, Kolkata 700019, India.
Ranjan Biswas S; Department of Botany, Visva-Bharati University, Santiniketan 731235, West Bengal, India. Electronic address: .
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Źródło :
Gene [Gene] 2021 Apr 20; Vol. 777, pp. 145459. Date of Electronic Publication: 2021 Jan 27.
Typ publikacji :
Journal Article
MeSH Terms :
Enterococcus faecium/*genetics
Milk/*microbiology
Plasmids/*genetics
Amino Acid Sequence/genetics ; Animals ; Base Sequence/genetics ; Cattle ; DNA Replication/genetics ; DNA, Bacterial/genetics ; Enterococcus faecium/isolation & purification ; Open Reading Frames/genetics ; Repetitive Sequences, Nucleic Acid ; Replicon/genetics
Czasopismo naukowe
Tytuł :
Telomeres reforged with non-telomeric sequences in mouse embryonic stem cells.
Autorzy :
Kim C; Department of Biological Sciences, Seoul National University, Seoul, Korea.; Aging Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Korea.
Sung S; Department of Biological Sciences, Seoul National University, Seoul, Korea.
Kim JS; Department of Biological Sciences, Seoul National University, Seoul, Korea.; Center for RNA Research, Institute for Basic Science, Seoul, Korea.
Lee H; Department of Biological Sciences, Seoul National University, Seoul, Korea.
Jung Y; Center for RNA Research, Institute for Basic Science, Seoul, Korea.
Shin S; Department of Biological Sciences, Seoul National University, Seoul, Korea.; Center for RNA Research, Institute for Basic Science, Seoul, Korea.
Kim E; Department of Biological Sciences, Seoul National University, Seoul, Korea.
Seo JJ; Department of Biological Sciences, Seoul National University, Seoul, Korea.; Center for RNA Research, Institute for Basic Science, Seoul, Korea.
Kim J; Department of Biological Sciences, Seoul National University, Seoul, Korea.
Kim D; Department of Biological Sciences, Ajou University, Suwon, Korea.; Department of Molecular Science and Technology, Ajou University, Suwon, Korea.
Niida H; Department of Molecular Biology, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.
Kim VN; Department of Biological Sciences, Seoul National University, Seoul, Korea.; Center for RNA Research, Institute for Basic Science, Seoul, Korea.
Park D; Department of Biological Sciences, Ajou University, Suwon, Korea. .; Department of Molecular Science and Technology, Ajou University, Suwon, Korea. .
Lee J; Department of Biological Sciences, Seoul National University, Seoul, Korea. .
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Źródło :
Nature communications [Nat Commun] 2021 Feb 17; Vol. 12 (1), pp. 1097. Date of Electronic Publication: 2021 Feb 17.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Mouse Embryonic Stem Cells/*metabolism
Repetitive Sequences, Nucleic Acid/*genetics
Telomerase/*genetics
Telomere/*genetics
Telomere Homeostasis/*genetics
Animals ; DNA-Binding Proteins/genetics ; Epigenomics/methods ; HEK293 Cells ; Humans ; Mice ; Mice, 129 Strain ; Mice, Inbred C57BL ; Mouse Embryonic Stem Cells/cytology ; Proteomics/methods ; Sequence Analysis, RNA/methods ; Single-Cell Analysis/methods ; Telomerase/metabolism ; Telomere/enzymology ; Transcription Factors/genetics
Czasopismo naukowe
Tytuł :
Development of 49 novel microsatellite markers from Next-generation sequencing data and a robust method for parentage tests in the emu (Dromaius novaehollandiae).
Autorzy :
Koshiishi Y; Graduate School of Bioindustry, Tokyo University of Agriculture, Abashiri, Hokkaido 099-2493, Japan.
Uchiyama H; NODAI Genome Research Center, Tokyo University of Agriculture, Setagaya-ku, Tokyo 156-8502, Japan.
Murata-Okubo M; Faculty of Bioindustry, Tokyo University of Agriculture, Abashiri, Hokkaido 099-2493, Japan.
Tanaka K; NODAI Genome Research Center, Tokyo University of Agriculture, Setagaya-ku, Tokyo 156-8502, Japan.
Kameyama Y; Graduate School of Bioindustry, Tokyo University of Agriculture, Abashiri, Hokkaido 099-2493, Japan.
Hirayama H; Graduate School of Bioindustry, Tokyo University of Agriculture, Abashiri, Hokkaido 099-2493, Japan.
Wada K; Graduate School of Bioindustry, Tokyo University of Agriculture, Abashiri, Hokkaido 099-2493, Japan. Electronic address: .
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Źródło :
Gene [Gene] 2021 Feb 15; Vol. 769, pp. 145238. Date of Electronic Publication: 2020 Oct 15.
Typ publikacji :
Journal Article
MeSH Terms :
Dromaiidae/*genetics
High-Throughput Nucleotide Sequencing/*methods
Microsatellite Repeats/*genetics
Animals ; Female ; Male ; Pedigree ; Polymorphism, Genetic ; Repetitive Sequences, Nucleic Acid
Czasopismo naukowe
Tytuł :
Development and Clinical Validation of Iso-IMRS: A Novel Diagnostic Assay for P. falciparum Malaria.
Autorzy :
Kolluri N; Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Room 702, Boston, Massachusetts 02215, United States.
Kamath S; Division of Research and Development, Jigsaw Bio Solutions Private Limited, No. 87, 4th Floor, Mundhra Chambers, 22nd Main, Banashankari 2nd Stage, Bangalore 560070, Karnataka, India.
Lally P; Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Room 702, Boston, Massachusetts 02215, United States.
Zanna M; Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Room 702, Boston, Massachusetts 02215, United States.
Galagan J; Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Room 702, Boston, Massachusetts 02215, United States.
Gitaka J; Directorate of Research and Innovation, Mount Kenya University, General Kago Road, P.O. Box 342, Thika 01000, Kenya.
Kamita M; Directorate of Research and Innovation, Mount Kenya University, General Kago Road, P.O. Box 342, Thika 01000, Kenya.
Cabodi M; Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Room 702, Boston, Massachusetts 02215, United States.
Lolabattu SR; Division of Research and Development, Jigsaw Bio Solutions Private Limited, No. 87, 4th Floor, Mundhra Chambers, 22nd Main, Banashankari 2nd Stage, Bangalore 560070, Karnataka, India.
Klapperich CM; Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Room 702, Boston, Massachusetts 02215, United States.
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Źródło :
Analytical chemistry [Anal Chem] 2021 Feb 02; Vol. 93 (4), pp. 2097-2105. Date of Electronic Publication: 2021 Jan 19.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA, Protozoan/*genetics
Malaria, Falciparum/*diagnosis
Nucleic Acid Amplification Techniques/*methods
Plasmodium falciparum/*genetics
Repetitive Sequences, Nucleic Acid/*genetics
DNA, Protozoan/isolation & purification ; Humans ; Limit of Detection ; Plasmodium falciparum/isolation & purification ; Reproducibility of Results
Czasopismo naukowe
Tytuł :
Breaking through the unknowns of the human reference genome.
Autorzy :
Miga KH
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Źródło :
Nature [Nature] 2021 Feb; Vol. 590 (7845), pp. 217-218.
Typ publikacji :
Historical Article; News
MeSH Terms :
Genome, Human/*genetics
Genomics/*standards
Genomics/*trends
Chromosomes, Human/genetics ; DNA, Intergenic/genetics ; Euchromatin/genetics ; Haploidy ; History, 21st Century ; Human Genome Project/history ; Humans ; Proteins/genetics ; Reference Standards ; Repetitive Sequences, Nucleic Acid/genetics
Periodyk
Tytuł :
Transcription-coupled repair and mismatch repair contribute towards preserving genome integrity at mononucleotide repeat tracts.
Autorzy :
Georgakopoulos-Soares I; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, 94158, USA.
Koh G; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.; Academic Department of Medical Genetics, The Clinical School, University of Cambridge, Cambridge, CB2 0QQ, UK.; MRC Cancer Unit, The Clinical School, University of Cambridge, Cambridge, CB2 0XZ, UK.
Momen SE; Academic Department of Medical Genetics, The Clinical School, University of Cambridge, Cambridge, CB2 0QQ, UK.; MRC Cancer Unit, The Clinical School, University of Cambridge, Cambridge, CB2 0XZ, UK.
Jiricny J; Institute of Molecular Life Sciences, University of Zurich and Institute of Biochemistry, ETH Zurich, CH-8093, Zurich, Switzerland.
Hemberg M; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK. .
Nik-Zainal S; Academic Department of Medical Genetics, The Clinical School, University of Cambridge, Cambridge, CB2 0QQ, UK. .; MRC Cancer Unit, The Clinical School, University of Cambridge, Cambridge, CB2 0XZ, UK. .
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Źródło :
Nature communications [Nat Commun] 2020 Apr 24; Vol. 11 (1), pp. 1980. Date of Electronic Publication: 2020 Apr 24.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA Breaks, Double-Stranded*
DNA Repair*
Repetitive Sequences, Nucleic Acid*
Neoplasms/*genetics
Amino Acid Motifs ; Computational Biology ; DNA Mutational Analysis ; DNA Replication ; Gene Deletion ; Gene Expression Regulation, Neoplastic ; Genetic Variation ; Genome, Human ; Genomics ; Humans ; INDEL Mutation ; Mutagenesis ; Neoplasms/metabolism ; Polynucleotides/genetics ; Sequence Analysis, RNA ; Transcription, Genetic
Czasopismo naukowe
Tytuł :
Type 1 FSHD with 6-10 Repeated Units: Factors Underlying Severity in Index Cases and Disease Penetrance in Their Relatives Attention.
Autorzy :
Salort-Campana E; Reference Center of Neuromuscular disorders and ALS, Timone University Hospital, AP-HM, 264 rue Saint-Pierre, Cedex 05 13385 Marseille, France.; Medical Genetics, Aix Marseille Université-Inserm UMR_1251, 13005 Marseille, France.
Fatehi F; Reference Center of Neuromuscular disorders and ALS, Timone University Hospital, AP-HM, 264 rue Saint-Pierre, Cedex 05 13385 Marseille, France.
Beloribi-Djefaflia S; Reference Center of Neuromuscular disorders and ALS, Timone University Hospital, AP-HM, 264 rue Saint-Pierre, Cedex 05 13385 Marseille, France.
Roche S; Medical Genetics, Aix Marseille Université-Inserm UMR_1251, 13005 Marseille, France.
Nguyen K; Medical Genetics, Aix Marseille Université-Inserm UMR_1251, 13005 Marseille, France.
Bernard R; Medical Genetics, Aix Marseille Université-Inserm UMR_1251, 13005 Marseille, France.
Cintas P; Service de Neurologie et d'explorations fonctionnelles, Centre Hospitalier Universitaire de Toulouse, 31000 Toulouse, France.
Solé G; Reference Center of Neuromuscular Disorders AOC, Bordeaux University Hospitals, 33000 Bordeaux, France.
Bouhour F; Electroneuromyography and Neuromuscular Department, GHE Neurologic Hospital, Cedex 69677 Lyon-Bron, France.
Ollagnon E; Neurogenetic Department, GHN Croix-Rousse Hospital, 69004 Lyon, France.
Sacconi S; Neuromuscular Disease Specialized Center, Nice University Hospital, 06000 Nice, France.
Echaniz-Laguna A; Neurology Department, APHP, CHU de Bicêtre, 78 rue du Général Leclerc, Cedex 94276 Le Kremlin-Bicêtre, France.
Kuntzer T; Nerve-Muscle Unit, Department of Clinical Neurosciences, Lausanne University, Hospital (CHUV), Lausanne 1002, Switzerland.
Levy N; Medical Genetics, Aix Marseille Université-Inserm UMR_1251, 13005 Marseille, France.
Magdinier F; Medical Genetics, Aix Marseille Université-Inserm UMR_1251, 13005 Marseille, France.
Attarian S; Reference Center of Neuromuscular disorders and ALS, Timone University Hospital, AP-HM, 264 rue Saint-Pierre, Cedex 05 13385 Marseille, France.; Medical Genetics, Aix Marseille Université-Inserm UMR_1251, 13005 Marseille, France.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2020 Mar 23; Vol. 21 (6). Date of Electronic Publication: 2020 Mar 23.
Typ publikacji :
Journal Article
MeSH Terms :
Genetic Association Studies*
Genetic Predisposition to Disease*
Repetitive Sequences, Nucleic Acid*
Muscular Dystrophy, Facioscapulohumeral/*diagnosis
Muscular Dystrophy, Facioscapulohumeral/*genetics
Adult ; Alleles ; Attention ; Cross-Sectional Studies ; DNA Methylation ; Female ; Genotype ; Humans ; Male ; Middle Aged ; Penetrance ; Phenotype ; Severity of Illness Index
SCR Disease Name :
Facioscapulohumeral muscular dystrophy 1a
Czasopismo naukowe
Tytuł :
Targeted Sequencing of Genomic Repeat Regions Detects Circulating Cell-free Echinococcus DNA.
Autorzy :
Wan Z; Institute of Molecular Precision Medicine, Xiangya Hospital, Key Laboratory of Molecular Precision Medicine of Hunan Province, Central South University, Changsha, Hunan, China.; Center for Medical Genetics, Central South University, Changsha, Hunan, China.
Peng X; Institute of Molecular Precision Medicine, Xiangya Hospital, Key Laboratory of Molecular Precision Medicine of Hunan Province, Central South University, Changsha, Hunan, China.; Center for Medical Genetics, Central South University, Changsha, Hunan, China.
Ma L; School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom.
Tian Q; Center for Prevention and Treatment of Echinococcosis, Qinghai Provincial People's Hospital, Xining, Qinghai, China.
Wu S; Department of Neurology, Qinghai Provincial People's Hospital, Xining, Qinghai, China.
Li J; Sunrain Biotechnology Corporation, Changsha, Hunan, China.
Ling J; Institute of Molecular Precision Medicine, Xiangya Hospital, Key Laboratory of Molecular Precision Medicine of Hunan Province, Central South University, Changsha, Hunan, China.
Lv W; Center for Medical Genetics, Central South University, Changsha, Hunan, China.
Ding B; Institute of Molecular Precision Medicine, Xiangya Hospital, Key Laboratory of Molecular Precision Medicine of Hunan Province, Central South University, Changsha, Hunan, China.; Center for Medical Genetics, Central South University, Changsha, Hunan, China.
Tan J; Institute of Molecular Precision Medicine, Xiangya Hospital, Key Laboratory of Molecular Precision Medicine of Hunan Province, Central South University, Changsha, Hunan, China.; Center for Medical Genetics, Central South University, Changsha, Hunan, China.
Zhang Z; Institute of Molecular Precision Medicine, Xiangya Hospital, Key Laboratory of Molecular Precision Medicine of Hunan Province, Central South University, Changsha, Hunan, China.; Center for Medical Genetics, Central South University, Changsha, Hunan, China.; Department of Neurosciences, Hengyang Medical School, University of South China, Hengyang, Hunan, China.
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Źródło :
PLoS neglected tropical diseases [PLoS Negl Trop Dis] 2020 Mar 10; Vol. 14 (3), pp. e0008147. Date of Electronic Publication: 2020 Mar 10 (Print Publication: 2020).
Typ publikacji :
Evaluation Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Repetitive Sequences, Nucleic Acid*
DNA, Helminth/*blood
Echinococcosis/*diagnosis
Echinococcus/*genetics
Molecular Diagnostic Techniques/*methods
Plasma/*chemistry
Adult ; Animals ; DNA, Helminth/chemistry ; DNA, Helminth/genetics ; DNA, Helminth/isolation & purification ; Female ; High-Throughput Nucleotide Sequencing/methods ; Humans ; Male ; Sensitivity and Specificity
Czasopismo naukowe
Tytuł :
Assessing aneuploidy with repetitive element sequencing.
Autorzy :
Douville C; Ludwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Howard Hughes Medical Institute, Johns Hopkins Medical Institutions, Baltimore, MD 21287.
Cohen JD; Ludwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Howard Hughes Medical Institute, Johns Hopkins Medical Institutions, Baltimore, MD 21287.; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218.
Ptak J; Ludwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Howard Hughes Medical Institute, Johns Hopkins Medical Institutions, Baltimore, MD 21287.
Popoli M; Ludwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Howard Hughes Medical Institute, Johns Hopkins Medical Institutions, Baltimore, MD 21287.
Schaefer J; Ludwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Howard Hughes Medical Institute, Johns Hopkins Medical Institutions, Baltimore, MD 21287.
Silliman N; Ludwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Howard Hughes Medical Institute, Johns Hopkins Medical Institutions, Baltimore, MD 21287.
Dobbyn L; Ludwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Howard Hughes Medical Institute, Johns Hopkins Medical Institutions, Baltimore, MD 21287.
Schoen RE; Department of Medicine, University of Pittsburgh, Pittsburgh, PA 15260.; Department of Epidemiology, University of Pittsburgh, Pittsburgh, PA 15260.
Tie J; Division of Personalized Oncology, Walter and Eliza Hall Institute of Medical Research, Parkville, VIC 3052, Australia.; Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne, Melbourne, VIC 3010, Australia.; Department of Medical Oncology, Western Health, Melbourne, VIC 3011, Australia.; Department of Medical Oncology, Peter MacCallum Cancer Center, Melbourne, VIC 3000, Australia.
Gibbs P; Division of Personalized Oncology, Walter and Eliza Hall Institute of Medical Research, Parkville, VIC 3052, Australia.; Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne, Melbourne, VIC 3010, Australia.; Department of Medical Oncology, Western Health, Melbourne, VIC 3011, Australia.
Goggins M; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Department of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD 21287.; Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Department of Medicine, Johns Hopkins Medical Institutions, Baltimore, MD 21287.
Wolfgang CL; Department of Surgery, Johns Hopkins Medical Institutions, Baltimore, MD 21287.
Wang TL; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Department of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD 21287.; Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Shih IM; Department of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD 21287.; Department of Gynecology and Obstetrics, Johns Hopkins Medical Institutions, Baltimore MD 21287.
Karchin R; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218.; Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218.
Lennon AM; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Department of Medicine, Johns Hopkins Medical Institutions, Baltimore, MD 21287.; Department of Surgery, Johns Hopkins Medical Institutions, Baltimore, MD 21287.
Hruban RH; Department of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD 21287.; Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Tomasetti C; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205.
Bettegowda C; Ludwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Department of Neurosurgery, Johns Hopkins Medical Institutions, Baltimore, MD 21287.
Kinzler KW; Ludwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Papadopoulos N; Ludwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Vogelstein B; Ludwig Center for Cancer Genetics and Therapeutics, Johns Hopkins University School of Medicine, Baltimore, MD 21287; .; Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287.; Howard Hughes Medical Institute, Johns Hopkins Medical Institutions, Baltimore, MD 21287.
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Źródło :
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2020 Mar 03; Vol. 117 (9), pp. 4858-4863. Date of Electronic Publication: 2020 Feb 19.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Aneuploidy*
Neoplasms*/diagnosis
Neoplasms*/genetics
Repetitive Sequences, Nucleic Acid*/genetics
Biomarkers, Tumor ; Circulating Tumor DNA ; DNA/genetics ; Esophagus ; Humans ; Liquid Biopsy ; Mutation ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
Molecular Analysis and Chromosome Mapping of Repetitive DNAs in the Green Terror Andinoacara rivulatus (Cichlidae: Cichlasomatini).
Autorzy :
Nirchio M; Departamento de Acuicultura, Escuela de Ciencias Aplicadas del Mar, Núcleo de Nueva Esparta, Universidad de Oriente, Porlamar, Venezuela.; Departamento de Acuicultura, Facultad de Ciencias Agropecuarias, Universidad Técnica de Machala, Machala, Ecuador.
Paim FG; Departamento de Morfologia, Instituto de Biociências Universidade Estadual Paulista, UNESP, Botucatu, Brazil.
Britzke R; Departamento de Acuicultura, Facultad de Ciencias Agropecuarias, Universidad Técnica de Machala, Machala, Ecuador.; Departamento de Morfologia, Instituto de Biociências Universidade Estadual Paulista, UNESP, Botucatu, Brazil.
Rossi AR; Dipartimento di Biologia e Biotecnologie 'C. Darwin,' Sapienza-Università di Roma, Rome, Italy.
Milana V; Dipartimento di Biologia e Biotecnologie 'C. Darwin,' Sapienza-Università di Roma, Rome, Italy.
Oliveira C; Departamento de Morfologia, Instituto de Biociências Universidade Estadual Paulista, UNESP, Botucatu, Brazil.
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Źródło :
Zebrafish [Zebrafish] 2020 Feb; Vol. 17 (1), pp. 38-47.
Typ publikacji :
Journal Article
MeSH Terms :
Chromosome Mapping*
Karyotype*
Phylogeny*
Repetitive Sequences, Nucleic Acid*
Cichlids/*genetics
DNA/*analysis
Animals ; Ecuador ; Electron Transport Complex IV/analysis ; Female ; Male ; RNA, Ribosomal, 16S/analysis ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
Repetitive DNA content in the maize genome is uncoupled from population stratification at SNP loci.
Autorzy :
Renny-Byfield S; Corteva Agriscience, 62nd Ave, Johnston, USA. .
Baumgarten A; Corteva Agriscience, 62nd Ave, Johnston, USA.
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Źródło :
BMC genomics [BMC Genomics] 2020 Jan 30; Vol. 21 (1), pp. 98. Date of Electronic Publication: 2020 Jan 30.
Typ publikacji :
Journal Article
MeSH Terms :
Repetitive Sequences, Nucleic Acid*
Chromosome Mapping/*methods
Chromosomes, Plant/*genetics
Zea mays/*classification
Cluster Analysis ; Genetics, Population ; Genome, Plant ; Inbreeding ; Phylogeny ; Plant Breeding ; Polymorphism, Single Nucleotide ; Zea mays/genetics
Czasopismo naukowe

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