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Tytuł :
Chemical and photochemical error rates in light-directed synthesis of complex DNA libraries.
Autorzy :
Lietard J; Institute of Inorganic Chemistry, University of Vienna, Althanstraße 14, 1090 Vienna, Austria.
Leger A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Erlich Y; Erlich Lab LLC, Raanana, Israel.
Sadowski N; Johns Hopkins University, Department of Molecular Biology and Genetics, Baltimore, MD, USA.
Timp W; Johns Hopkins University, Department of Molecular Biology and Genetics, Baltimore, MD, USA.; Johns Hopkins University, Departments of Biomedical Engineering, Molecular Biology and Genetics and Medicine, Division of Infectious Disease, Baltimore, MD, USA.
Somoza MM; Institute of Inorganic Chemistry, University of Vienna, Althanstraße 14, 1090 Vienna, Austria.; Chair of Food Chemistry and Molecular Sensory Science, Technical University of Munich, Lise-Meitner-Straße 34, 85354 Freising, Germany.; Leibniz-Institute for Food Systems Biology at the Technical University of Munich, Lise-Meitner-Straße 34, 85354 Freising, Germany.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jul 09; Vol. 49 (12), pp. 6687-6701.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Library*
High-Throughput Nucleotide Sequencing*
Sequence Analysis, DNA*
Light ; Nucleotides/analysis ; Oligonucleotide Array Sequence Analysis ; Photochemical Processes
Czasopismo naukowe
Tytuł :
Chromosome-scale genome assembly of Japanese pear (Pyrus pyrifolia) variety 'Nijisseiki'.
Autorzy :
Shirasawa K; Department of Frontier Research and Development, Kazusa DNA Research Institute, Chiba, Japan.
Itai A; Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.
Isobe S; Department of Frontier Research and Development, Kazusa DNA Research Institute, Chiba, Japan.
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Źródło :
DNA research : an international journal for rapid publication of reports on genes and genomes [DNA Res] 2021 May 02; Vol. 28 (2).
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Plant*
Sequence Analysis, DNA*
Transcriptome*
Pyrus/*genetics
Chromosomes, Plant ; Genomics ; High-Throughput Nucleotide Sequencing ; Sequence Analysis, RNA
Czasopismo naukowe
Tytuł :
Effective double-digest RAD sequencing and genotyping despite large genome size.
Autorzy :
Gargiulo R; Royal Botanic Gardens, Kew, Richmond, Surrey, UK.
Kull T; Estonian University of Life Sciences, Tartu, Estonia.
Fay MF; Royal Botanic Gardens, Kew, Richmond, Surrey, UK.; School of Biological Sciences, University of Western Australia, Crawley, WA, Australia.
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Źródło :
Molecular ecology resources [Mol Ecol Resour] 2021 May; Vol. 21 (4), pp. 1037-1055. Date of Electronic Publication: 2021 Jan 09.
Typ publikacji :
Journal Article
MeSH Terms :
Genome Size*
Orchidaceae*/genetics
Sequence Analysis, DNA*
Computational Biology ; Genotype ; Reproducibility of Results ; Sequence Analysis ; Workflow
Czasopismo naukowe
Tytuł :
Multiple Viral Infections Detected in Phytophthora condilina by Total and Small RNA Sequencing.
Autorzy :
Botella L; Phytophthora Research Centre, Department of Forest Protection and Wildlife Management, Faculty of Forestry and Wood Technology, Mendel University in Brno, Zemědělská 1, 61300 Brno, Czech Republic.; Biotechnological Centre, Faculty of Agriculture, University of South Bohemia, Na Sadkach 1780, 37005 Ceske Budejovice, Czech Republic.
Jung T; Phytophthora Research Centre, Department of Forest Protection and Wildlife Management, Faculty of Forestry and Wood Technology, Mendel University in Brno, Zemědělská 1, 61300 Brno, Czech Republic.
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Źródło :
Viruses [Viruses] 2021 Apr 04; Vol. 13 (4). Date of Electronic Publication: 2021 Apr 04.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Sequence Analysis, RNA*
Phytophthora/*virology
RNA Viruses/*classification
RNA Viruses/*genetics
RNA, Small Untranslated/*genetics
RNA, Viral/*genetics
Virus Diseases/*virology
Computational Biology ; Genome, Viral ; Open Reading Frames ; Phylogeny ; Portugal ; RNA Viruses/isolation & purification ; RNA-Seq ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
Use of SNP chips to detect rare pathogenic variants: retrospective, population based diagnostic evaluation.
Autorzy :
Mn W; Institute of Biomedical and Clinical Science, University of Exeter College of Medicine and Health, Royal Devon and Exeter Hospital, Exeter EX2 5DW, UK.
L J; Institute of Biomedical and Clinical Science, University of Exeter College of Medicine and Health, Royal Devon and Exeter Hospital, Exeter EX2 5DW, UK.
Jw H; Institute of Biomedical and Clinical Science, University of Exeter College of Medicine and Health, Royal Devon and Exeter Hospital, Exeter EX2 5DW, UK.
Ks R; Institute of Biomedical and Clinical Science, University of Exeter College of Medicine and Health, Royal Devon and Exeter Hospital, Exeter EX2 5DW, UK.
J T; Institute of Biomedical and Clinical Science, University of Exeter College of Medicine and Health, Royal Devon and Exeter Hospital, Exeter EX2 5DW, UK.
At H; Institute of Biomedical and Clinical Science, University of Exeter College of Medicine and Health, Royal Devon and Exeter Hospital, Exeter EX2 5DW, UK.
Cf W; Institute of Biomedical and Clinical Science, University of Exeter College of Medicine and Health, Royal Devon and Exeter Hospital, Exeter EX2 5DW, UK.
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Źródło :
BMJ (Clinical research ed.) [BMJ] 2021 Feb 15; Vol. 372, pp. n214. Date of Electronic Publication: 2021 Feb 15.
Typ publikacji :
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Oligonucleotide Array Sequence Analysis*
Breast Neoplasms/*diagnosis
Ovarian Neoplasms/*diagnosis
Pancreatic Neoplasms/*diagnosis
Prostatic Neoplasms/*diagnosis
Adult ; Aged ; Breast Neoplasms/genetics ; False Negative Reactions ; False Positive Reactions ; Female ; Genes, BRCA1 ; Genes, BRCA2 ; Genetic Testing/methods ; Genotyping Techniques ; Humans ; Male ; Middle Aged ; Ovarian Neoplasms/genetics ; Pancreatic Neoplasms/genetics ; Polymorphism, Single Nucleotide ; Predictive Value of Tests ; Prostatic Neoplasms/genetics ; Registries ; Retrospective Studies ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
De novo genome assembly of two tomato ancestors, Solanum pimpinellifolium and Solanum  lycopersicum var. cerasiforme, by long-read sequencing.
Autorzy :
Takei H; Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan.; Research Fellow of Japan Society for Promotion of Science (JSPS), Kojimachi, Tokyo 102-0083, Japan.
Shirasawa K; Department of Frontier Research and Development, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.
Kuwabara K; Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan.
Toyoda A; Comparative Genomics Laboratory, Advanced Genomics Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.; Comparative Genomics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Matsuzawa Y; TOKITA Seed Co. LTD, Otone, Saitama 349-1144, Japan.
Iioka S; TOKITA Seed Co. LTD, Otone, Saitama 349-1144, Japan.
Ariizumi T; Tsukuba Plant Innovation Research Center, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan.; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8572, Japan.
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Źródło :
DNA research : an international journal for rapid publication of reports on genes and genomes [DNA Res] 2021 Jan 19; Vol. 28 (1).
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Plant*
Sequence Analysis, DNA*
Transcriptome*
Solanum/*genetics
Genes, Plant ; Genomics ; High-Throughput Nucleotide Sequencing ; Lycopersicon esculentum/genetics ; Sequence Analysis, RNA
Czasopismo naukowe
Tytuł :
The development of SSR markers based on RNA-sequencing and its validation between and within Carex L. species.
Autorzy :
Liu L; College of Grassland Science, Beijing Forestry University, Beijing, 100083, China.
Fan X; Beijing Research and Development Center for Grass and Environment, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Tan P; Beijing Chaoyang Foreign Language School, Beijing, 100000, China.
Wu J; Beijing Research and Development Center for Grass and Environment, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Zhang H; Beijing Research and Development Center for Grass and Environment, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Han C; Beijing Research and Development Center for Grass and Environment, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Chen C; Beijing Research and Development Center for Grass and Environment, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Xun L; Shaanxi Engineering Research Center for Conservation and Utilization of Botanical Resources, Xi'an Botanical Garden of Shaanxi Province (Institute of Botany of Shaanxi Province), Shaanxi, 710000, China.
Guo W; Department of Plant Biology, University of California, Davis, Davis, CA, USA.
Chang Z; College of Grassland Science, Beijing Forestry University, Beijing, 100083, China. .
Teng K; Beijing Research and Development Center for Grass and Environment, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China. .
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Źródło :
BMC plant biology [BMC Plant Biol] 2021 Jan 06; Vol. 21 (1), pp. 17. Date of Electronic Publication: 2021 Jan 06.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Flow*
Genes, Plant*
Genetic Markers*
Microsatellite Repeats*
Sequence Analysis, DNA*
Carex Plant/*genetics
China ; Gene Expression Profiling ; Genetic Variation ; Genotype ; Germany ; New Zealand ; North America ; Phylogeny ; Polymorphism, Genetic ; Sequence Analysis, RNA
Czasopismo naukowe
Tytuł :
Development of 18S rRNA gene arrays for forensic detection of diatoms.
Autorzy :
Jiang L; College of Biological Sciences and Technology, Fuzhou University, Fuzhou, 350108, China.
Xiao C; School of Forensic Medicine, Southern Medical University, Guangzhou, 510515, China; Guangzhou Forensic Science Institute, Guangdong Province Key Laboratory of Forensic Genetics, Guangzhou, 510030, China.
Zhao J; Guangzhou Forensic Science Institute, Guangdong Province Key Laboratory of Forensic Genetics, Guangzhou, 510030, China.
Jiang T; College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 1037, China.
Lin J; College of Biological Sciences and Technology, Fuzhou University, Fuzhou, 350108, China.
Xu Q; Guangzhou Forensic Science Institute, Guangdong Province Key Laboratory of Forensic Genetics, Guangzhou, 510030, China.
Liu C; School of Forensic Medicine, Southern Medical University, Guangzhou, 510515, China; Guangzhou Forensic Science Institute, Guangdong Province Key Laboratory of Forensic Genetics, Guangzhou, 510030, China.
Cai W; College of Biological Sciences and Technology, Fuzhou University, Fuzhou, 350108, China. Electronic address: .
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Źródło :
Forensic science international [Forensic Sci Int] 2020 Dec; Vol. 317, pp. 110482. Date of Electronic Publication: 2020 Sep 26.
Typ publikacji :
Journal Article
MeSH Terms :
Oligonucleotide Array Sequence Analysis*
RNA, Ribosomal, 18S*
Diatoms/*genetics
Animals ; Drowning/diagnosis ; Forensic Medicine/methods ; Humans ; Lung/pathology ; Oligonucleotide Probes ; Polymerase Chain Reaction ; Sequence Analysis, DNA ; Species Specificity ; Swine ; Water
Czasopismo naukowe
Tytuł :
The emerging landscape of single-molecule protein sequencing technologies.
Autorzy :
Alfaro JA; International Centre for Cancer Vaccine Science, University of Gdańsk, Gdańsk, Poland. .
Bohländer P; Faculty of Applied Sciences, Delft University of Technology, Delft, the Netherlands.
Dai M; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.; Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Filius M; Department of BioNanoScience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, the Netherlands.
Howard CJ; Department of Chemistry, University of Texas at Austin, Austin, TX, USA.
van Kooten XF; Department of Biomedical Engineering, Technion-Israel Institute of Technology, Haifa, Israel.
Ohayon S; Department of Biomedical Engineering, Technion-Israel Institute of Technology, Haifa, Israel.
Pomorski A; Department of BioNanoScience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, the Netherlands.
Schmid S; NanoDynamicsLab, Laboratory of Biophysics, Wageningen University, Wageningen, the Netherlands.
Aksimentiev A; Department of Physics, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Anslyn EV; Department of Chemistry, University of Texas at Austin, Austin, TX, USA.
Bedran G; International Centre for Cancer Vaccine Science, University of Gdańsk, Gdańsk, Poland.
Cao C; Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Chinappi M; Dipartimento di Ingegneria Industriale, Università di Roma Tor Vergata, Rome, Italy.
Coyaud E; Univ. Lille, Inserm, CHU Lille, U1192-Protéomique Réponse Inflammatoire Spectrométrie de Masse-PRISM, Lille, France.
Dekker C; Department of BioNanoScience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, the Netherlands.
Dittmar G; Department of Infection and Immunity, Luxembourg Institute of Health, Strassen, Luxembourg.; Department of Life Sciences and Medicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.
Drachman N; Department of Physics, Brown University, Providence, RI, USA.
Eelkema R; Faculty of Applied Sciences, Delft University of Technology, Delft, the Netherlands.
Goodlett D; International Centre for Cancer Vaccine Science, University of Gdańsk, Gdańsk, Poland.; Genome BC Proteomics Centre, University of Victoria, Victoria, British Columbia, Canada.
Hentz S; Université Grenoble Alpes, CEA, LETI, Grenoble, France.
Kalathiya U; International Centre for Cancer Vaccine Science, University of Gdańsk, Gdańsk, Poland.
Kelleher NL; Departments of Chemistry and Molecular Biosciences, and the Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.
Kelly RT; Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT, USA.
Kelman Z; Institute for Bioscience and Biotechnology Research, National Institute of Standards and Technology, University of Maryland, Rockville, MD, USA.; Biomolecular Labeling Laboratory, Institute for Bioscience and Biotechnology Research, Rockville, MD, USA.
Kim SH; Department of BioNanoScience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, the Netherlands.
Kuster B; Chair of Proteomics and Bioanalytics, Technische Universität München, Freising, Germany.; Bavarian Center for Biomolecular Mass Spectrometry, Freising, Germany.
Rodriguez-Larrea D; Department of Biochemistry and Molecular Biology, Biofisika Institute (CSIC, UPV/EHU), Leioa, Spain.
Lindsay S; Biodesign Institute, School of Molecular Sciences, Department of Physics, Arizona State University, Tempe, AZ, USA.
Maglia G; Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, the Netherlands.
Marcotte EM; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas at Austin, Austin, TX, USA.
Marino JP; Institute for Bioscience and Biotechnology Research, National Institute of Standards and Technology, University of Maryland, Rockville, MD, USA.
Masselon C; Université Grenoble Alpes, CEA, Inserm, BGE U1038, Grenoble, France.
Mayer M; Adolphe Merkle Institute, University of Fribourg, Fribourg, Switzerland.
Samaras P; Chair of Proteomics and Bioanalytics, Technische Universität München, Freising, Germany.
Sarthak K; Department of Physics, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Sepiashvili L; University of Toronto, Hospital for Sick Children, Toronto, Ontario, Canada.
Stein D; Department of Physics, Brown University, Providence, RI, USA.
Wanunu M; Department of Physics, Northeastern University, Boston, MA, USA.; Department of Chemistry and Chemical Biology, Northeastern University, Boston, MA, USA.
Wilhelm M; Chair of Proteomics and Bioanalytics, Technische Universität München, Freising, Germany.
Yin P; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.; Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Meller A; Department of Biomedical Engineering, Technion-Israel Institute of Technology, Haifa, Israel. .; Russell Berrie Nanotechnology Institute, Technion-Israel Institute of Technology, Haifa, Israel. .
Joo C; Department of BioNanoScience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, the Netherlands. .
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Źródło :
Nature methods [Nat Methods] 2021 Jun; Vol. 18 (6), pp. 604-617. Date of Electronic Publication: 2021 Jun 07.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Review
MeSH Terms :
Sequence Analysis, Protein/*methods
Single Molecule Imaging/*methods
Mass Spectrometry/methods ; Nanotechnology ; Proteins/chemistry ; Proteomics/methods ; Sequence Analysis, RNA/methods ; Single-Cell Analysis/methods
Czasopismo naukowe
Tytuł :
A novel signature predicts recurrence risk and therapeutic response in breast cancer patients.
Autorzy :
Tran QH; Department of Biotechnology, Ho Chi Minh City University of Food Industry, Ho Chi Minh City, Vietnam.
Than VT; Faculty of Biotechnology, Chemistry and Environmental Engineering, PHENIKAA University, Hanoi, Vietnam.; PHENIKAA Research and Technology Institute (PRATI), A&A Green Phoenix Group JSC, Hanoi, Vietnam.
Luu PL; Epigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Darlinghurst, New South Wales, Australia.
Clarke D; Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA.
Lam HN; Department of Microbiology and Environmental Toxicology, University of California, Santa Cruz, California, USA.
Nguyen TT; School of Biotechnology, Tan Tao University, Tan Duc E.City, Vietnam.
Nguyen DT; School of Biotechnology, Tan Tao University, Tan Duc E.City, Vietnam.
Duy PQ; Medical Scientist Training Program, Yale University School of Medicine, New Haven, Connecticut, USA.
Phung D; School of Medicine, Griffith University, Southport, Queensland, Australia.
Nguyen MN; School of Medicine, Vietnam National University Ho Chi Minh City, Ho Chi Minh City, Vietnam.
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Źródło :
International journal of cancer [Int J Cancer] 2021 Jun 01; Vol. 148 (11), pp. 2848-2856. Date of Electronic Publication: 2021 Feb 21.
Typ publikacji :
Journal Article; Multicenter Study; Research Support, Non-U.S. Gov't
MeSH Terms :
Up-Regulation*
Acetylserotonin O-Methyltransferase/*genetics
Breast Neoplasms/*drug therapy
Sequence Analysis, RNA/*methods
Tamoxifen/*therapeutic use
Breast Neoplasms/genetics ; Breast Neoplasms/pathology ; Databases, Genetic ; Female ; Gene Expression Profiling ; Gene Expression Regulation, Neoplastic ; Humans ; Neoplasm Grading ; Oligonucleotide Array Sequence Analysis ; Retrospective Studies ; Survival Analysis ; Treatment Outcome
Czasopismo naukowe
Tytuł :
Multi Locus View: an extensible web-based tool for the analysis of genomic data.
Autorzy :
Sergeant MJ; MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Hughes JR; MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Hentges L; MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Lunter G; MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.; University Medical Centre Groningen, Department of Epidemiology, University of Groningen, Groningen, The Netherlands.
Downes DJ; MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Taylor S; MRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK. .
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Źródło :
Communications biology [Commun Biol] 2021 May 25; Vol. 4 (1), pp. 623. Date of Electronic Publication: 2021 May 25.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Sequence Analysis, DNA/*methods
Chromatin Immunoprecipitation Sequencing/methods ; Computational Biology/methods ; Genomics/methods ; High-Throughput Nucleotide Sequencing/methods ; Internet ; Numerical Analysis, Computer-Assisted ; RNA-Seq/methods ; Reproducibility of Results ; Sequence Analysis, RNA/methods ; Software
Czasopismo naukowe
Tytuł :
[Application of RNA sequencing in clinical diagnosis of Mendelian disease].
Autorzy :
Xiao H; Department of Neonatology, Children's Hospital, Fudan University, Shanghai 201102, China. .
Zhou WH
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Źródło :
Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics [Zhongguo Dang Dai Er Ke Za Zhi] 2020 Oct; Vol. 22 (10), pp. 1138-1142.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Sequence Analysis, RNA*
Base Sequence ; Exome ; Sequence Analysis, DNA ; Whole Exome Sequencing
Czasopismo naukowe
Tytuł :
Deciphering the Monilinia fructicola Genome to Discover Effector Genes Possibly Involved in Virulence.
Autorzy :
Vilanova L; Laboratory of Phytopathology, Wageningen University, 6708 PB Wageningen, The Netherlands.; IRTA, Postharvest Programme, Edifici Fruitcentre, Parc Científic i Tecnològic Agroalimentari de Lleida, Parc de Gardeny, 25003 Lleida, Catalonia, Spain.
Valero-Jiménez CA; Laboratory of Phytopathology, Wageningen University, 6708 PB Wageningen, The Netherlands.
van Kan JAL; Laboratory of Phytopathology, Wageningen University, 6708 PB Wageningen, The Netherlands.
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Źródło :
Genes [Genes (Basel)] 2021 Apr 14; Vol. 12 (4). Date of Electronic Publication: 2021 Apr 14.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Ascomycota/*pathogenicity
Fungal Proteins/*genetics
Gene Expression Profiling/*methods
Sequence Analysis, DNA/*methods
Ascomycota/genetics ; Ascomycota/metabolism ; Data Curation ; Europe ; Gene Expression Regulation, Fungal ; High-Throughput Nucleotide Sequencing ; Molecular Sequence Annotation ; Secondary Metabolism ; Sequence Analysis, RNA ; Virulence
SCR Organism :
Monilinia fructicola
Czasopismo naukowe
Tytuł :
In Vitro Plant Regeneration in Conifers: The Role of WOX and KNOX Gene Families.
Autorzy :
Bueno N; Plant Physiology, Biotechnology Institute of Asturias (IUBA), Department of Organisms and Systems Biology, University of Oviedo, ES-33071 Oviedo, Spain.
Cuesta C; Plant Physiology, Biotechnology Institute of Asturias (IUBA), Department of Organisms and Systems Biology, University of Oviedo, ES-33071 Oviedo, Spain.
Centeno ML; Plant Physiology, Department of Engineering and Agricultural Sciences, University of León, ES-24071 León, Spain.
Ordás RJ; Plant Physiology, Biotechnology Institute of Asturias (IUBA), Department of Organisms and Systems Biology, University of Oviedo, ES-33071 Oviedo, Spain.
Alvarez JM; Plant Physiology, Biotechnology Institute of Asturias (IUBA), Department of Organisms and Systems Biology, University of Oviedo, ES-33071 Oviedo, Spain.
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Źródło :
Genes [Genes (Basel)] 2021 Mar 19; Vol. 12 (3). Date of Electronic Publication: 2021 Mar 19.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Gene Expression Profiling/*methods
Homeodomain Proteins/*genetics
Sequence Analysis, DNA/*methods
Tracheophyta/*physiology
Cryopreservation ; Gene Expression Regulation, Plant ; In Vitro Techniques ; Multigene Family ; Organogenesis, Plant ; Plant Breeding ; Plant Proteins/genetics ; Plant Somatic Embryogenesis Techniques ; Regeneration ; Sequence Analysis, RNA ; Tracheophyta/genetics
Czasopismo naukowe
Tytuł :
Long-term warming in a Mediterranean-type grassland affects soil bacterial functional potential but not bacterial taxonomic composition.
Autorzy :
Gao Y; Institute of Desertification Studies, Chinese Academy of Forestry, Beijing, China.; State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.
Ding J; State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.; Key Laboratory of Dryland Agriculture, Ministry of Agriculture of the People's Republic of China, Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, China.
Yuan M; Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.
Chiariello N; Department of Global Ecology, Carnegie Institution for Science, Stanford, CA, USA.
Docherty K; Department of Biological Sciences, Western Michigan University, Kalamazoo, MI, USA.
Field C; Department of Global Ecology, Carnegie Institution for Science, Stanford, CA, USA.
Gao Q; State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.
Gu B; Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Gutknecht J; Department of Soil Ecology, Helmholtz Centre for Environmental Research - UFZ, Halle, Germany.; Department of Soil, Water, and Climate, University of Minnesota, Twin Cities, Saint Paul, MN, USA.
Hungate BA; Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA.; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA.
Le Roux X; Mirobial Ecology Centre LEM, INRA, CNRS, University of Lyon, University Lyon 1, UMR INRA 1418, Villeurbanne, France.
Niboyet A; Institut d'Ecologie et des Sciences de l'Environnement de Paris (Sorbonne Université, CNRS, INRA, IRD, Université Paris Diderot, UPEC), Paris, France.; AgroParisTech, Paris, France.
Qi Q; State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.
Shi Z; Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.
Zhou J; State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.; Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.; Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Yang Y; State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China. .
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Źródło :
NPJ biofilms and microbiomes [NPJ Biofilms Microbiomes] 2021 Feb 08; Vol. 7 (1), pp. 17. Date of Electronic Publication: 2021 Feb 08.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Archaea/*genetics
Bacteria/*classification
Fungi/*genetics
Sequence Analysis, RNA/*methods
Bacteria/genetics ; Bacteria/isolation & purification ; Carbon/metabolism ; Gene Expression Profiling ; Genes, Archaeal ; Genes, Bacterial ; Genes, Fungal ; Global Warming ; Grassland ; High-Throughput Nucleotide Sequencing ; Nitrogen/metabolism ; Oligonucleotide Array Sequence Analysis ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; Soil Microbiology
Czasopismo naukowe
Tytuł :
Status quo of ALK testing in lung cancer: results of an EQA scheme based on in-situ hybridization, immunohistochemistry, and RNA/DNA sequencing.
Autorzy :
Jurmeister P; Institute of Pathology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin and Berlin Institute of Health, 10117, Berlin, Germany. .; German Cancer Consortium (DKTK), Partner Site Berlin, and German Cancer Research Center (DKFZ), 69210, Heidelberg, Germany. .
Vollbrecht C; Institute of Pathology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin and Berlin Institute of Health, 10117, Berlin, Germany.; German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany.
Jöhrens K; Institute of Pathology, University Hospital Dresden, 01307, Dresden, Germany.; Quality Assurance Initiative for Pathology (QuIP - Quality in Pathology) GmbH, Berlin, Germany.
Aust D; Institute of Pathology, University Hospital Dresden, 01307, Dresden, Germany.
Behnke A; Institute of Pathology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin and Berlin Institute of Health, 10117, Berlin, Germany.
Stenzinger A; Institute of Pathology, University Hospital Heidelberg, 69120, Heidelberg, Germany.; German Cancer Consortium (DKTK), Partner Site Heidelberg, 69120, Heidelberg, Germany.
Penzel R; Institute of Pathology, University Hospital Heidelberg, 69120, Heidelberg, Germany.
Endris V; Institute of Pathology, University Hospital Heidelberg, 69120, Heidelberg, Germany.
Schirmacher P; Institute of Pathology, University Hospital Heidelberg, 69120, Heidelberg, Germany.; German Cancer Consortium (DKTK), Partner Site Heidelberg, 69120, Heidelberg, Germany.
Fisseler-Eckhoff A; Institute of Pathology, Helios Dr. Horst-Schmidt-Kliniken, 65199, Wiesbaden, Germany.
Neumann J; Department of Pathology, Faculty of Medicine, LMU Munich, 80337, Munich, Germany.
Kirchner T; Department of Pathology, Faculty of Medicine, LMU Munich, 80337, Munich, Germany.; German Cancer Consortium (DKTK), Partner Site Munich, 80337, Munich, Germany.
Büttner R; Institute of Pathology, Faculty of Medicine and University Hospital of Cologne, 50937, Cologne, Germany.
Merkelbach-Bruse S; Institute of Pathology, Faculty of Medicine and University Hospital of Cologne, 50937, Cologne, Germany.
Kreipe H; Medical School Hannover, Institute of Pathology, 30559, Hannover, Germany.
Jonigk D; Medical School Hannover, Institute of Pathology, 30559, Hannover, Germany.
Jochum W; Institute of Pathology, Cantonal Hospital St, 9007, GallenGallen, Switzerland.
Rodriguez R; Institute of Pathology, Cantonal Hospital St, 9007, GallenGallen, Switzerland.
Dietel M; Institute of Pathology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin and Berlin Institute of Health, 10117, Berlin, Germany.
Horst D; Institute of Pathology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin and Berlin Institute of Health, 10117, Berlin, Germany.; German Cancer Consortium (DKTK), Partner Site Berlin, and German Cancer Research Center (DKFZ), 69210, Heidelberg, Germany.
Hummel M; Institute of Pathology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin and Berlin Institute of Health, 10117, Berlin, Germany.
von Laffert M; Institute of Pathology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin and Berlin Institute of Health, 10117, Berlin, Germany.
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Źródło :
Virchows Archiv : an international journal of pathology [Virchows Arch] 2021 Aug; Vol. 479 (2), pp. 247-255. Date of Electronic Publication: 2021 Jun 25.
Typ publikacji :
Comparative Study; Journal Article; Multicenter Study
MeSH Terms :
Immunohistochemistry*
In Situ Hybridization*
Sequence Analysis, DNA*
Sequence Analysis, RNA*
Translocation, Genetic*
Anaplastic Lymphoma Kinase/*genetics
Biomarkers, Tumor/*genetics
Carcinoma, Non-Small-Cell Lung/*genetics
Lung Neoplasms/*genetics
Carcinoma, Non-Small-Cell Lung/enzymology ; Carcinoma, Non-Small-Cell Lung/pathology ; Germany ; High-Throughput Nucleotide Sequencing ; Humans ; Laboratory Proficiency Testing ; Lung Neoplasms/enzymology ; Lung Neoplasms/pathology ; Observer Variation ; Predictive Value of Tests ; Reproducibility of Results
Czasopismo naukowe
Tytuł :
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets.
Autorzy :
Marchet C; CNRS, UMR 9189 - CRIStAL, Université de Lille, F-59000 Lille, France.
Iqbal Z; European Bioinformatics Institute, Cambridge CB10 1SD, UK.
Gautheret D; CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Université Paris-Saclay, Gif-sur-Yvette 91190, France.
Salson M; CNRS, UMR 9189 - CRIStAL, Université de Lille, F-59000 Lille, France.
Chikhi R; Institut Pasteur, CNRS, C3BI - USR 3756, 75015 Paris, France.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2020 Jul 01; Vol. 36 (Suppl_1), pp. i177-i185.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Sequence Analysis, DNA*
Software*
Algorithms ; Humans ; Sequence Analysis, RNA
Czasopismo naukowe
Tytuł :
Learning interpretable cellular and gene signature embeddings from single-cell transcriptomic data.
Autorzy :
Zhao Y; School of Computer Science, McGill University, Montreal, QC, Canada.; Harvard-MIT Health Sciences and Technology, Cambridge, MA, USA.
Cai H; Department of Machine Intelligence, Peking University, Beijing, China.
Zhang Z; School of Computer Science, Fudan University, Shanghai, China.
Tang J; HEC Montreal, Montreal, QC, Canada. .
Li Y; School of Computer Science, McGill University, Montreal, QC, Canada. .
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Źródło :
Nature communications [Nat Commun] 2021 Sep 06; Vol. 12 (1), pp. 5261. Date of Electronic Publication: 2021 Sep 06.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Genetic*
Models, Genetic*
Sequence Analysis, RNA/*statistics & numerical data
Single-Cell Analysis/*methods
Alzheimer Disease/genetics ; Alzheimer Disease/pathology ; Animals ; Depressive Disorder, Major/genetics ; Depressive Disorder, Major/pathology ; Gene Expression Profiling/methods ; Gene Expression Profiling/statistics & numerical data ; Genes, Mitochondrial ; Humans ; Mice ; Neural Networks, Computer ; RNA, Small Cytoplasmic ; Retina/cytology ; Retina/physiology ; Sequence Analysis, RNA/methods
Czasopismo naukowe
Tytuł :
An Overview of Characteristics of Clinical Next-Generation Sequencing-Based Testing for Hematologic Malignancies.
Autorzy :
Zhang BM; From the Department of Pathology, Stanford University School of Medicine, Stanford, California (Zhang).
Keegan A; The Department of Pathology, Brigham and Women's Hospital, Harvard University, Boston, Massachusetts (Keegan, Lindeman, Kim).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
Li P; ARUP Laboratories, Department of Pathology, University of Utah, Salt Lake City, Utah (Li).
Lindeman NI; The Department of Pathology, Brigham and Women's Hospital, Harvard University, Boston, Massachusetts (Keegan, Lindeman, Kim).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
Nagarajan R; PierianDx, St Louis, Missouri (Nagarajan).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
Routbort MJ; The Department of Hematopathology, The University of Texas MD Anderson Cancer Center, Houston (Routbort).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
Vasalos P; Proficiency Testing, College of American Pathologists, Northfield, Illinois (Vasalos).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
Kim AS; The Department of Pathology, Brigham and Women's Hospital, Harvard University, Boston, Massachusetts (Keegan, Lindeman, Kim).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
Merker JD; The Departments of Pathology and Laboratory Medicine & Genetics, Lineberger Comprehensive Cancer Center, University of North Carolina School of Medicine, Chapel Hill (Merker).; Current or past members of the College of American Pathologists, Molecular Oncology Committee are Keegan, Kim, Lindeman, Merker, Nagarajan, Routbort, Vasalos (staff). Merker and Kim contributed equally and are co-senior authors of this work.
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Źródło :
Archives of pathology & laboratory medicine [Arch Pathol Lab Med] 2021 Sep 01; Vol. 145 (9), pp. 1110-1116.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Laboratory Proficiency Testing*
Sequence Analysis, DNA*
Hematologic Neoplasms/*genetics
Humans ; Surveys and Questionnaires
Czasopismo naukowe
Tytuł :
Characterization of the aromatic profile of purple passion fruit (Passiflora edulis Sims) during ripening by HS-SPME-GC/MS and RNA sequencing.
Autorzy :
Li C; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China; Guangxi Key Laboratory of Fruits and Vegetables Storage-processing Technology, 174 East Daxue Road, 530007 Nanning, China.
Xin M; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China; Guangxi Key Laboratory of Fruits and Vegetables Storage-processing Technology, 174 East Daxue Road, 530007 Nanning, China.
Li L; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
He X; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Yi P; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Tang Y; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Li J; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Zheng F; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Liu G; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Sheng J; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Li Z; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Sun J; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China; Guangxi Key Laboratory of Fruits and Vegetables Storage-processing Technology, 174 East Daxue Road, 530007 Nanning, China.
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Źródło :
Food chemistry [Food Chem] 2021 Sep 01; Vol. 355, pp. 129685. Date of Electronic Publication: 2021 Mar 25.
Typ publikacji :
Journal Article
MeSH Terms :
Gas Chromatography-Mass Spectrometry*
Sequence Analysis, RNA*
Solid Phase Microextraction*
Fruit/*chemistry
Odorants/*analysis
Passiflora/*chemistry
Passiflora/*growth & development
Color ; Gene Expression Profiling ; Passiflora/genetics ; Volatile Organic Compounds/analysis ; Volatile Organic Compounds/isolation & purification
Czasopismo naukowe

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