Temat: "SEQUENCE analysis" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: Bidirectional de novo peptide sequencing using a transformer model.
Autorzy:: Lee S; Center for Biomedical Computing, Korea Institute of Science and Technology Information, Daejeon, Republic of Korea.
Kim H; Center for Biomedical Computing, Korea Institute of Science and Technology Information, Daejeon, Republic of Korea.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2024 Feb 28; Vol. 20 (2), pp. e1011892. Date of Electronic Publication: 2024 Feb 28 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Algorithms*
Sequence Analysis, Protein*/methods
Peptides/chemistry ; Amino Acid Sequence ; Amino Acids

Czasopismo naukowe

na półce

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Skocz do pozycji: 2.

Tytuł:: BioSeq-Diabolo: Biological sequence similarity analysis using Diabolo.
Autorzy:: Li H; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.
Liu B; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.; Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology, Beijing, China.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2023 Jun 20; Vol. 19 (6), pp. e1011214. Date of Electronic Publication: 2023 Jun 20 (Print Publication: 2023).
Typ publikacji:: Journal Article
MeSH Terms:: Software*
Sequence Analysis, DNA*/methods
Sequence Analysis, Protein*/methods
Natural Language Processing ; Internet ; Computational Biology ; Semantics

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Skocz do pozycji: 3.

Tytuł:: Full genome sequence analysis of African swine fever virus isolates from Cameroon.
Autorzy:: Goatley LC; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Freimanis G; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Tennakoon C; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Foster TJ; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Quershi M; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Dixon LK; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Batten C; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Forth JH; Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald, Insel Riems, Germany.
Wade A; National Veterinary Laboratory (LANAVET), Garoua, Cameroon.
Netherton C; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Mar 21; Vol. 19 (3), pp. e0293049. Date of Electronic Publication: 2024 Mar 21 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: African Swine Fever Virus*
African Swine Fever*/epidemiology
Swine ; Animals ; Cameroon/epidemiology ; Sus scrofa/genetics ; Sequence Analysis ; Sequence Analysis, DNA

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Skocz do pozycji: 4.

Tytuł:: Cell-type annotation with accurate unseen cell-type identification using multiple references.
Autorzy:: Xiong YX; School of Mathematics and Statistics, Central China Normal University, Wuhan, China.; Key Laboratory of Nonlinear Analysis & Applications (Ministry of Education), Central China Normal University, Wuhan, China.
Wang MG; School of Mathematics and Statistics, Central China Normal University, Wuhan, China.; Key Laboratory of Nonlinear Analysis & Applications (Ministry of Education), Central China Normal University, Wuhan, China.
Chen L; State Key Laboratory of Cell Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.; Key Laboratory of Systems Health Science of Zhejiang Province, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Hangzhou, China.; Guangdong Institute of Intelligence Science and Technology, Hengqin, Zhuhai, Guangdong, China.
Zhang XF; School of Mathematics and Statistics, Central China Normal University, Wuhan, China.; Key Laboratory of Nonlinear Analysis & Applications (Ministry of Education), Central China Normal University, Wuhan, China.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2023 Jun 28; Vol. 19 (6), pp. e1011261. Date of Electronic Publication: 2023 Jun 28 (Print Publication: 2023).
Typ publikacji:: Dataset; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Single-Cell Analysis*/methods
Sequence Analysis, RNA*/methods
Humans ; COVID-19/diagnosis ; Software

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Skocz do pozycji: 5.

Tytuł:: Tracking ebolavirus genomic drift with a resequencing microarray.
Autorzy:: Tiper I; Division of Emerging and Transfusion-Transmitted Diseases, Office of Blood Research and Review, Center for Biologics Evaluation and Research, US Food and Drug Administration, Silver Spring, MD, United States of America.
Kourout M; Division of Emerging and Transfusion-Transmitted Diseases, Office of Blood Research and Review, Center for Biologics Evaluation and Research, US Food and Drug Administration, Silver Spring, MD, United States of America.
Lanning B; Division of Emerging and Transfusion-Transmitted Diseases, Office of Blood Research and Review, Center for Biologics Evaluation and Research, US Food and Drug Administration, Silver Spring, MD, United States of America.
Fisher C; Division of Emerging and Transfusion-Transmitted Diseases, Office of Blood Research and Review, Center for Biologics Evaluation and Research, US Food and Drug Administration, Silver Spring, MD, United States of America.
Konduru K; Division of Emerging and Transfusion-Transmitted Diseases, Office of Blood Research and Review, Center for Biologics Evaluation and Research, US Food and Drug Administration, Silver Spring, MD, United States of America.
Purkayastha A; OpenBox Bio, Vienna, VA, United States of America.
Kaplan G; Division of Emerging and Transfusion-Transmitted Diseases, Office of Blood Research and Review, Center for Biologics Evaluation and Research, US Food and Drug Administration, Silver Spring, MD, United States of America.
Duncan R; Division of Emerging and Transfusion-Transmitted Diseases, Office of Blood Research and Review, Center for Biologics Evaluation and Research, US Food and Drug Administration, Silver Spring, MD, United States of America.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2022 Feb 10; Vol. 17 (2), pp. e0263732. Date of Electronic Publication: 2022 Feb 10 (Print Publication: 2022).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Antibodies, Neutralizing/*pharmacology
Ebolavirus/*classification
Glycoproteins/*genetics
Sequence Analysis, RNA/*methods
Ebolavirus/drug effects ; Ebolavirus/genetics ; Genetic Drift ; Genome, Viral ; High-Throughput Nucleotide Sequencing ; Oligonucleotide Array Sequence Analysis ; Phylogeny ; Viral Proteins/genetics

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Skocz do pozycji: 6.

Tytuł:: High-throughput DNA extraction and cost-effective miniaturized metagenome and amplicon library preparation of soil samples for DNA sequencing.
Autorzy:: Jensen TBN; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Dall SM; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Knutsson S; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Karst SM; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Albertsen M; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Apr 04; Vol. 19 (4), pp. e0301446. Date of Electronic Publication: 2024 Apr 04 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Metagenome*
High-Throughput Nucleotide Sequencing*/methods
Cost-Benefit Analysis ; Sequence Analysis, DNA/methods ; DNA ; Soil ; Metagenomics/methods

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Skocz do pozycji: 7.

Tytuł:: Zoothamnium mariella sp. nov., a marine, colonial ciliate with an atypcial growth pattern, and its ectosymbiont Candidatus Fusimicrobium zoothamnicola gen. nov., sp. nov.
Autorzy:: Kendlbacher V; Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria.
Winter TMR; Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria.
Bright M; Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Apr 01; Vol. 19 (4), pp. e0300758. Date of Electronic Publication: 2024 Apr 01 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Ciliophora*/genetics
Gammaproteobacteria*/genetics
In Situ Hybridization, Fluorescence ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA ; DNA, Bacterial

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Skocz do pozycji: 8.

Tytuł:: Comparative study on differential expression analysis methods for single-cell RNA sequencing data with small biological replicates: Based on single-cell transcriptional data of PBMCs from COVID-19 severe patients.
Autorzy:: Xue J; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Zhou X; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Yang J; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Niu A; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Mar 27; Vol. 19 (3), pp. e0299358. Date of Electronic Publication: 2024 Mar 27 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Software*
COVID-19*/genetics
Humans ; Gene Expression Profiling/methods ; Sequence Analysis, RNA/methods ; Algorithms ; Single-Cell Analysis/methods ; Cluster Analysis

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Skocz do pozycji: 9.

Tytuł:: High-throughput sequencing of insect specimens with sub-optimal DNA preservation using a practical, plate-based Illumina-compatible Tn5 transposase library preparation method.
Autorzy:: Cobb L; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
de Muinck E; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
Kollias S; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
Skage M; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
Gilfillan GD; Department of Medical Genetics, Oslo University Hospital Ullevål and University of Oslo, Oslo, Norway.
Sydenham MAK; Norwegian Institute for Nature Research (NINA), Oslo, Norway.
Qiao SW; Department of Immunology, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.
Star B; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Mar 22; Vol. 19 (3), pp. e0300865. Date of Electronic Publication: 2024 Mar 22 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: DNA*/genetics
High-Throughput Nucleotide Sequencing*/methods
Transposases*
Gene Library ; Ethanol ; Sequence Analysis, DNA/methods

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Skocz do pozycji: 10.

Tytuł:: Bayesian inference of relative fitness on high-throughput pooled competition assays.
Autorzy:: Razo-Mejia M; Department of Biology, Stanford University, Stanford, California, United States of America.
Mani M; NSF-Simons Center for Quantitative Biology, Northwestern University, Chicago, Illinois, United States of America.; Department of Engineering Sciences and Applied Mathematics, Northwestern University, Chicago, Illinois, United States of America.
Petrov D; Department of Biology, Stanford University, Stanford, California, United States of America.; Stanford Cancer Institute, Stanford University School of Medicine, Stanford, California, United States of America.; Chan Zuckerberg Biohub, San Francisco, California, United States of America.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2024 Mar 15; Vol. 20 (3), pp. e1011937. Date of Electronic Publication: 2024 Mar 15 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Software*
High-Throughput Screening Assays*
Bayes Theorem ; Sequence Analysis, DNA ; Gene Library

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Skocz do pozycji: 11.

Tytuł:: Early assessment of fungal and oomycete pathogens in greenhouse irrigation water using Oxford nanopore amplicon sequencing.
Autorzy:: Kudjordjie EN; Department of Agroecology, Faculty of Technical Sciences, Aarhus University, Slagelse, Denmark.
Schmidt-Høier AS; Teknologisk Institut Gregersensvej, Taastrup, Denmark.
Brøndum MB; Teknologisk Institut Gregersensvej, Taastrup, Denmark.
Johnsen MG; Teknologisk Institut Gregersensvej, Taastrup, Denmark.
Nicolaisen M; Department of Agroecology, Faculty of Technical Sciences, Aarhus University, Slagelse, Denmark.
Vestergård M; Department of Agroecology, Faculty of Technical Sciences, Aarhus University, Slagelse, Denmark.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Mar 15; Vol. 19 (3), pp. e0300381. Date of Electronic Publication: 2024 Mar 15 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Nanopores*
Oomycetes*/genetics
Reproducibility of Results ; Fungi/genetics ; Sequence Analysis, DNA ; DNA ; High-Throughput Nucleotide Sequencing/methods

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Skocz do pozycji: 12.

Tytuł:: INSIDER: Interpretable sparse matrix decomposition for RNA expression data analysis.
Autorzy:: Zhao K; Department of Statistics, The Chinese University of Hong Kong, Shatin, Hong Kong SAR, China.
Huang S; Department of System Engineering and Engineering Management, The Chinese University of Hong Kong, Shatin, Hong Kong SAR, China.
Lin C; Department of Psychiatry, The Chinese University of Hong Kong, Shatin, Hong Kong SAR, China.
Sham PC; Department of Psychiatry, University of Hong Kong, Pokfulam, Hong Kong, China.; Centre for Genomic Sciences, University of Hong Kong, Pokfulam, Hong Kong, China.; State Key Laboratory for Cognitive and Brain Sciences, University of Hong Kong, Pokfulam, Hong Kong, China.
So HC; Department of Psychiatry, The Chinese University of Hong Kong, Shatin, Hong Kong SAR, China.; School of Biomedical Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong SAR, China.; KIZ-CUHK Joint Laboratory of Bioresources and Molecular Research of Common Diseases, Kunming Institute of Zoology and The Chinese University of Hong Kong, Hong Kong, China.
Lin Z; Department of Statistics, The Chinese University of Hong Kong, Shatin, Hong Kong SAR, China.; Pokaż więcej
Źródło:: PLoS genetics [PLoS Genet] 2024 Mar 14; Vol. 20 (3), pp. e1011189. Date of Electronic Publication: 2024 Mar 14 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Algorithms*
Transcriptome*/genetics
Sequence Analysis, RNA ; Data Analysis ; RNA/genetics ; Gene Expression Profiling/methods ; Single-Cell Analysis/methods ; Cluster Analysis

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Skocz do pozycji: 13.

Tytuł:: HaplotagLR: An efficient and configurable utility for haplotagging long reads.
Autorzy:: Holmes MJ; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.
Mahjour B; Department of Medicinal Chemistry, University of Michigan, Ann Arbor, Michigan, United States of America.
Castro CP; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.
Farnum GA; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.
Diehl AG; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.
Boyle AP; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.; Department of Human Genetics, University of Michigan, Ann Arbor, Michigan, United States of America.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Mar 13; Vol. 19 (3), pp. e0298688. Date of Electronic Publication: 2024 Mar 13 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Genomics*/methods
Genome, Human*
Humans ; Sequence Analysis, DNA/methods ; Haplotypes/genetics ; High-Throughput Nucleotide Sequencing/methods ; Algorithms

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Skocz do pozycji: 14.

Tytuł:: De novo copy number variations in candidate genomic regions in patients of severe autism spectrum disorder in Vietnam.
Autorzy:: Bui HTP; High Technology Center, Vinmec Health Care System, Hai Ba Trung, Ha Noi, Vietnam.; Translational Medicine Laboratory, Biomedical Research Centre, University of Salford, Salford, United Kingdom.
Huy Do D; High Technology Center, Vinmec Health Care System, Hai Ba Trung, Ha Noi, Vietnam.
Ly HTT; High Technology Center, Vinmec Health Care System, Hai Ba Trung, Ha Noi, Vietnam.
Tran KT; Vinmec Research Institute of Stem Cell and Gene Technology, Vinmec Health Care System, Hai Ba Trung, Ha Noi, Vietnam.
Le HTT; Vinmec Research Institute of Stem Cell and Gene Technology, Vinmec Health Care System, Hai Ba Trung, Ha Noi, Vietnam.
Nguyen KT; Vinmec Research Institute of Stem Cell and Gene Technology, Vinmec Health Care System, Hai Ba Trung, Ha Noi, Vietnam.
Pham LTD; Vinmec Research Institute of Stem Cell and Gene Technology, Vinmec Health Care System, Hai Ba Trung, Ha Noi, Vietnam.
Le HD; Big Data Institute, Vinmec Health Care System, Hai Ba Trung, Ha Noi, Vietnam.
Le VS; Vinmec Research Institute of Stem Cell and Gene Technology, Vinmec Health Care System, Hai Ba Trung, Ha Noi, Vietnam.; University of Engineering and Technology, Vietnam National University Hanoi, Cau Giay, Hanoi, Vietnam.
Mukhopadhyay A; Translational Medicine Laboratory, Biomedical Research Centre, University of Salford, Salford, United Kingdom.
Nguyen LT; Vinmec Research Institute of Stem Cell and Gene Technology, Vinmec Health Care System, Hai Ba Trung, Ha Noi, Vietnam.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Mar 07; Vol. 19 (3), pp. e0290936. Date of Electronic Publication: 2024 Mar 07 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Autism Spectrum Disorder*/diagnosis
Autism Spectrum Disorder*/genetics
Male ; Child ; Female ; Humans ; DNA Copy Number Variations/genetics ; Vietnam/epidemiology ; Oligonucleotide Array Sequence Analysis ; Genomics ; DNA

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Skocz do pozycji: 15.

Tytuł:: Quantifying the clusterness and trajectoriness of single-cell RNA-seq data.
Autorzy:: Lim HS; Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States of America.
Qiu P; Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States of America.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2024 Feb 28; Vol. 20 (2), pp. e1011866. Date of Electronic Publication: 2024 Feb 28 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Single-Cell Gene Expression Analysis*
Single-Cell Analysis*
Sequence Analysis, RNA ; Algorithms ; Cluster Analysis ; Gene Expression Profiling

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Skocz do pozycji: 16.

Tytuł:: A novel batch-effect correction method for scRNA-seq data based on Adversarial Information Factorization.
Autorzy:: Monnier L; Paris-Saclay University, CentraleSupélec, Laboratory of Mathematics and Computer Science (MICS), Gif-sur-Yvette, France.
Cournède PH; Paris-Saclay University, CentraleSupélec, Laboratory of Mathematics and Computer Science (MICS), Gif-sur-Yvette, France.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2024 Feb 22; Vol. 20 (2), pp. e1011880. Date of Electronic Publication: 2024 Feb 22 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Single-Cell Gene Expression Analysis*
Single-Cell Analysis*/methods
Humans ; Cluster Analysis ; Exome Sequencing ; Benchmarking ; Sequence Analysis, RNA/methods ; Gene Expression Profiling ; Algorithms

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Skocz do pozycji: 17.

Tytuł:: CLAW: An automated Snakemake workflow for the assembly of chloroplast genomes from long-read data.
Autorzy:: Phillips AL; Department of Food Science, University of Adelaide, Adelaide, South Australia, Australia.
Ferguson S; Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia.
Burton RA; Department of Food Science, University of Adelaide, Adelaide, South Australia, Australia.
Watson-Haigh NS; South Australian Genomics Centre (SAGC), SAHMRI, Adelaide, South Australia, Australia.; Australian Genome Research Facility, Victorian Comprehensive Cancer Centre, Melbourne, Victoria, Australia.; Alkahest Inc., San Carlos, California, United States of America.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2024 Feb 09; Vol. 20 (2), pp. e1011870. Date of Electronic Publication: 2024 Feb 09 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Genome, Chloroplast*/genetics
Humans ; Workflow ; Sequence Analysis, DNA ; Computational Biology ; Chloroplasts/genetics ; High-Throughput Nucleotide Sequencing

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Skocz do pozycji: 18.

Tytuł:: Extraction and selection of high-molecular-weight DNA for long-read sequencing from Chlamydomonas reinhardtii.
Autorzy:: Chaux F; CNRS, UMR7238, Institut de Biologie Paris-Seine, Laboratory of Computational and Quantitative Biology, Sorbonne Université, Paris, France.
Agier N; CNRS, UMR7238, Institut de Biologie Paris-Seine, Laboratory of Computational and Quantitative Biology, Sorbonne Université, Paris, France.
Eberhard S; CNRS, UMR7141, Institut de Biologie Physico-Chimique, Laboratory of Chloroplast Biology and Light-Sensing in Microalgae, Sorbonne Université, Paris, France.
Xu Z; CNRS, UMR7238, Institut de Biologie Paris-Seine, Laboratory of Computational and Quantitative Biology, Sorbonne Université, Paris, France.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Feb 08; Vol. 19 (2), pp. e0297014. Date of Electronic Publication: 2024 Feb 08 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Chlamydomonas reinhardtii*/genetics
Sequence Analysis, DNA/methods ; High-Throughput Nucleotide Sequencing/methods ; DNA/genetics ; Genomics/methods

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Skocz do pozycji: 19.

Tytuł:: Geographic characteristics of HTLV-1 molecular subgroups and genetic substitutions in East Asia: Insights from complete genome sequencing of HTLV-1 strains isolated in Taiwan and Japan.
Autorzy:: Nozuma S; Department of Neurology and Geriatrics, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Kagoshima, Japan.
Yoshimura A; Department of Neurology and Geriatrics, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Kagoshima, Japan.
Pai SC; Division of Quality, Taipei Blood Center, Taipei, Taiwan.
Chen HJ; Department of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan University College of Medicine, Taipei, Taiwan.
Matsuura E; Department of Neurology and Geriatrics, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Kagoshima, Japan.
Tanaka M; Division of Neuroimmunology, Joint Research Center for Human Retrovirus Infection, Kagoshima University, Kagoshima, Japan.
Kodama D; Division of Neuroimmunology, Joint Research Center for Human Retrovirus Infection, Kagoshima University, Kagoshima, Japan.
Dozono M; Department of Neurology and Geriatrics, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Kagoshima, Japan.
Matsuzaki T; Division of Neuroimmunology, Joint Research Center for Human Retrovirus Infection, Kagoshima University, Kagoshima, Japan.
Takashima H; Department of Neurology and Geriatrics, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Kagoshima, Japan.
Yang YC; Department of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan University College of Medicine, Taipei, Taiwan.
Kubota R; Division of Neuroimmunology, Joint Research Center for Human Retrovirus Infection, Kagoshima University, Kagoshima, Japan.; Pokaż więcej
Źródło:: PLoS neglected tropical diseases [PLoS Negl Trop Dis] 2024 Feb 05; Vol. 18 (2), pp. e0011928. Date of Electronic Publication: 2024 Feb 05 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Human T-lymphotropic virus 1*
HTLV-I Infections*/epidemiology
Humans ; Japan/epidemiology ; Taiwan/epidemiology ; Phylogeny ; Bayes Theorem ; Sequence Analysis, DNA ; Asia, Eastern/epidemiology ; Whole Genome Sequencing

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Skocz do pozycji: 20.

Tytuł:: Characterization of hepatocellular adenoma and carcinoma using microRNA profiling and targeted gene sequencing.
Autorzy:: Zheng J; Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Sadot E; Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.; Department of Surgery, Rabin Medical Center, Petah Tikva, Israel.; Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Vigidal JA; Cancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.; Laboratory of Biochemistry and Molecular Biology, National Cancer Institute, Bethesda, Maryland, United States of America.
Klimstra DS; Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Balachandran VP; Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Kingham TP; Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Allen PJ; Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
D'Angelica MI; Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
DeMatteo RP; Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Jarnagin WR; Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Ventura A; Cancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2018 Jul 27; Vol. 13 (7), pp. e0200776. Date of Electronic Publication: 2018 Jul 27 (Print Publication: 2018).
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:: Sequence Analysis, DNA*
Adenoma, Liver Cell/*genetics
Carcinoma, Hepatocellular/*genetics
Liver Neoplasms/*genetics
MicroRNAs/*genetics
Adult ; Aged ; Aged, 80 and over ; Biomarkers, Tumor/genetics ; Cluster Analysis ; DNA Mutational Analysis ; Female ; Gene Expression Regulation, Neoplastic ; Humans ; Immunohistochemistry ; Inflammation ; Male ; MicroRNAs/metabolism ; Middle Aged ; Pilot Projects ; Sequence Analysis, RNA ; beta Catenin/metabolism

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