Molecular Dynamics-Based Comparative Analysis of Chondroitin and Dermatan Sulfates.
Autorzy:
Pągielska M; Faculty of Chemistry, University of Gdansk, ul. Wita Stwosza 63, 80-308 Gdańsk, Poland. SamsonovSA; Faculty of Chemistry, University of Gdansk, ul. Wita Stwosza 63, 80-308 Gdańsk, Poland.
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Źródło:
Biomolecules [Biomolecules] 2023 Jan 28; Vol. 13 (2). Date of Electronic Publication: 2023 Jan 28.
Maszota-Zieleniak M; Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza, 63, 80-308 Gdańsk, Poland. Zsila F; Institute of Materials and Environmental Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar Tudósok Körútja 2, 1117 Budapest, Hungary. SamsonovSA; Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza, 63, 80-308 Gdańsk, Poland.
Biglycan Interacts with Type I Insulin-like Receptor (IGF-IR) Signaling Pathway to Regulate Osteosarcoma Cell Growth and Response to Chemotherapy.
Autorzy:
Giatagana EM; Laboratory of Histology-Embryology, Medical School, University of Crete, 71003 Heraklion, Greece. Berdiaki A; Laboratory of Histology-Embryology, Medical School, University of Crete, 71003 Heraklion, Greece. Gaardløs M; Department of Theoretical Chemistry, Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza 63, 80-308 Gdansk, Poland. SamsonovSA; Department of Theoretical Chemistry, Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza 63, 80-308 Gdansk, Poland. Tzanakakis GN; Laboratory of Histology-Embryology, Medical School, University of Crete, 71003 Heraklion, Greece. Nikitovic D; Laboratory of Histology-Embryology, Medical School, University of Crete, 71003 Heraklion, Greece.
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Źródło:
Cancers [Cancers (Basel)] 2022 Feb 25; Vol. 14 (5). Date of Electronic Publication: 2022 Feb 25.
Effect of Tetraphenylborate on Physicochemical Properties of Bovine Serum Albumin.
Autorzy:
Grabowska O; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. Kogut MM; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. Żamojć K; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. SamsonovSA; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. Makowska J; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. Tesmar A; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. Chmur K; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. Wyrzykowski D; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. Chmurzyński L; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland.
Advanced Molecular Dynamics Approaches to Model a Tertiary Complex APRIL/TACI with Long Glycosaminoglycans.
Autorzy:
Marcisz M; Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza 63, 80-308 Gdańsk, Poland.; Intercollegiate Faculty of Biotechnology of UG and MUG, ul. Abrahama 58, 80-307 Gdańsk, Poland. Maszota-Zieleniak M; Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza 63, 80-308 Gdańsk, Poland. Huard B; Laboratory TIMC-IMAG, University Grenoble-Alpes, CNRS UMR 5525, 38700 La Tronche, France. SamsonovSA; Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza 63, 80-308 Gdańsk, Poland.
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Źródło:
Biomolecules [Biomolecules] 2021 Sep 12; Vol. 11 (9). Date of Electronic Publication: 2021 Sep 12.
Theory and Practice of Coarse-Grained Molecular Dynamics of Biologically Important Systems.
Autorzy:
Liwo A; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. Czaplewski C; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. Sieradzan AK; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. Lipska AG; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. SamsonovSA; Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland. Murarka RK; Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhopal 462066, MP, India.
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Źródło:
Biomolecules [Biomolecules] 2021 Sep 11; Vol. 11 (9). Date of Electronic Publication: 2021 Sep 11.
Probing the Proton-Loading Site of Cytochrome C Oxidase Using Time-Resolved Fourier Transform Infrared Spectroscopy.
Autorzy:
Gorbikova E; Institute of Biotechnology, University of Helsinki, FIN-00014 Helsinki, Finland. SamsonovSA; Faculty of Chemistry, University of Gdansk, 80-308 Gdansk, Poland. Kalendar R; Department of Agricultural Sciences, University of Helsinki, FI-00014 Helsinki, Finland.
Meglumine acridone acetate, the ionic salt of CMA and N-methylglucamine, induces apoptosis in human PBMCs via the mitochondrial pathway.
Autorzy:
Plotnikova MA; Smorodintsev Research Institute of Influenza, St. Petersburg, Russia. . Klotchenko SA; Smorodintsev Research Institute of Influenza, St. Petersburg, Russia. Kiselev AA; Almazov National Medical Research Centre, St. Petersburg, Russia. Gorshkov AN; Smorodintsev Research Institute of Influenza, St. Petersburg, Russia. Shurygina AS; Smorodintsev Research Institute of Influenza, St. Petersburg, Russia. Vasilyev KA; Smorodintsev Research Institute of Influenza, St. Petersburg, Russia. Uciechowska-Kaczmarzyk U; Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland. SamsonovSA; Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland. Kovalenko AL; Institute of Toxicology, Federal Medical-Biological Agency of Russia, St. Petersburg, Russia. Vasin AV; Smorodintsev Research Institute of Influenza, St. Petersburg, Russia.; Institute of Biomedical Systems and Botechnologies, Peter the Great St. Petersburg Polytechnic University, St. Petersburg, Russia.; Saint Petersburg State Chemical Pharmaceutical University, St. Petersburg, Russia.
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Źródło:
Scientific reports [Sci Rep] 2019 Dec 03; Vol. 9 (1), pp. 18240. Date of Electronic Publication: 2019 Dec 03.
Analysis of Procollagen C-Proteinase Enhancer-1/Glycosaminoglycan Binding Sites and of the Potential Role of Calcium Ions in the Interaction.
Autorzy:
Potthoff J; Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza 63, 80-308 Gdańsk, Poland. .; Institute of Chemistry and Biochemistry, Free University of Berlin, Takustr. 3, 14195 Berlin, Germany. . Bojarski KK; Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza 63, 80-308 Gdańsk, Poland. . Kohut G; Institute of Materials and Environmental Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar tudósok körútja 2, 1117 Budapest, Hungary. .; MTA-ELTE Research Group of Peptide Chemistry, Hungarian Academy of Sciences, Eötvös Loránd University, Budapest 112, P.O. Box 32, 1518 Budapest, Hungary. . Lipska AG; Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza 63, 80-308 Gdańsk, Poland. . Liwo A; Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza 63, 80-308 Gdańsk, Poland. . Kessler E; Maurice and Gabriela Goldschleger Eye Research Institute, Tel-Aviv University Sackler Faculty of Medicine, Sheba Medical Center, Tel-Hashomer, 52621 Ramat Gan, Israel. . Ricard-Blum S; Institute of Molecular and Supramolecular Chemistry and Biochemistry, UMR 5246, CNRS, INSA Lyon, CPE, University Claude Bernard Lyon 1, Univ Lyon, 69622 Villeurbanne CEDEX, France. . SamsonovSA; Faculty of Chemistry, University of Gdańsk, ul. Wita Stwosza 63, 80-308 Gdańsk, Poland. sergey.samsonov@ug.edu.pl.
Insights into the structure and dynamics of lysyl oxidase propeptide, a flexible protein with numerous partners.
Autorzy:
Vallet SD; Univ Lyon, University Claude Bernard Lyon 1, CNRS, INSA Lyon, CPE, Institute of Molecular and Supramolecular Chemistry and Biochemistry, UMR 5246, F-69622, Villeurbanne cedex, France. Miele AE; Univ Lyon, University Claude Bernard Lyon 1, CNRS, INSA Lyon, CPE, Institute of Molecular and Supramolecular Chemistry and Biochemistry, UMR 5246, F-69622, Villeurbanne cedex, France. Uciechowska-Kaczmarzyk U; Laboratory of Molecular Modeling, Department of Theoretical Chemistry, Faculty of Chemistry, University of Gdansk, Wita Stwosza 63, 80-308, Gdańsk, Poland. Liwo A; Laboratory of Molecular Modeling, Department of Theoretical Chemistry, Faculty of Chemistry, University of Gdansk, Wita Stwosza 63, 80-308, Gdańsk, Poland. Duclos B; Univ Lyon, University Claude Bernard Lyon 1, CNRS, INSA Lyon, CPE, Institute of Molecular and Supramolecular Chemistry and Biochemistry, UMR 5246, F-69622, Villeurbanne cedex, France. SamsonovSA; Laboratory of Molecular Modeling, Department of Theoretical Chemistry, Faculty of Chemistry, University of Gdansk, Wita Stwosza 63, 80-308, Gdańsk, Poland. Ricard-Blum S; Univ Lyon, University Claude Bernard Lyon 1, CNRS, INSA Lyon, CPE, Institute of Molecular and Supramolecular Chemistry and Biochemistry, UMR 5246, F-69622, Villeurbanne cedex, France. .
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Źródło:
Scientific reports [Sci Rep] 2018 Aug 06; Vol. 8 (1), pp. 11768. Date of Electronic Publication: 2018 Aug 06.
Insights into the preferential order of strand exchange in the Cre/loxP recombinase system: impact of the DNA spacer flanking sequence and flexibility.
Atkovska K; Structural Bioinformatics, BIOTEC TU Dresden, Tatzberg 47-51, Dresden 01307, Germany. . SamsonovSA; Structural Bioinformatics, BIOTEC TU Dresden, Tatzberg 47-51, Dresden 01307, Germany. . Paszkowski-Rogacz M; Department of Medical Systems Biology, TU Dresden, Medical Faculty, University Hospital Carl Gustav Carus, Dresden 01307, Germany. . Pisabarro MT; Structural Bioinformatics, BIOTEC TU Dresden, Tatzberg 47-51, Dresden 01307, Germany. .
Glycosaminoglycan monosaccharide blocks analysis by quantum mechanics, molecular dynamics, and nuclear magnetic resonance.
Autorzy:
SamsonovSA; Structural Bioinformatics, BIOTEC, TU Dresden, Tatzberg 47-51, 01307 Dresden, Germany. Theisgen S; Institute of Medical Physics and Biophysics, University of Leipzig, Härtelstr. 16-18, 04107 Leipzig, Germany. Riemer T; Institute of Medical Physics and Biophysics, University of Leipzig, Härtelstr. 16-18, 04107 Leipzig, Germany. Huster D; Institute of Medical Physics and Biophysics, University of Leipzig, Härtelstr. 16-18, 04107 Leipzig, Germany. Pisabarro MT; Structural Bioinformatics, BIOTEC, TU Dresden, Tatzberg 47-51, 01307 Dresden, Germany.
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Źródło:
BioMed research international [Biomed Res Int] 2014; Vol. 2014, pp. 808071. Date of Electronic Publication: 2014 Apr 07.
SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds.
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