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Tytuł:
Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding.
Autorzy:
Xiong W; Biosystematics Group, Wageningen University & Research, P.O. Box 16, Wageningen, 6700 AA, The Netherlands.
van Workum DM; Bioinformatics Group, Wageningen University & Research, P.O. Box 633, Wageningen, 6700 AP, The Netherlands.
Berke L; Biosystematics Group, Wageningen University & Research, P.O. Box 16, Wageningen, 6700 AA, The Netherlands.
Bakker LV; Bioscience, Wageningen University & Research, P.O. Box 16, Wageningen, 6700 AA, The Netherlands.
Schijlen E; Bioscience, Wageningen University & Research, P.O. Box 16, Wageningen, 6700 AA, The Netherlands.
Becker FFM; Biosystematics Group, Wageningen University & Research, P.O. Box 16, Wageningen, 6700 AA, The Netherlands.; Laboratory of Genetics, Wageningen University & Research, P.O. Box 16, Wageningen, 6700 AA, The Netherlands.
van de Geest H; Bioscience, Wageningen University & Research, P.O. Box 16, Wageningen, 6700 AA, The Netherlands.
Peters S; Bioscience, Wageningen University & Research, P.O. Box 16, Wageningen, 6700 AA, The Netherlands.
Michelmore R; The Genome Center, Genome & Biomedical Sciences Facility, University of California, Davis, 451 East Health Sciences Drive, Davis, CA 95616-8816, USA.
van Treuren R; Centre for Genetic Resources, the Netherlands (CGN), Wageningen University & Research, P.O. Box 16, Wageningen, 6700 AA, The Netherlands.
Jeuken M; Plant Breeding Group, Wageningen University & Research, P.O. Box 386, Wageningen, 6700 AJ, The Netherlands.
Smit S; Bioinformatics Group, Wageningen University & Research, P.O. Box 633, Wageningen, 6700 AP, The Netherlands.
Schranz ME; Biosystematics Group, Wageningen University & Research, P.O. Box 16, Wageningen, 6700 AA, The Netherlands.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Nov 01; Vol. 13 (11).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Lactuca*/genetics
Plant Breeding*
Genes, Plant
Czasopismo naukowe
Tytuł:
Refining bulk segregant analyses: ontology-mediated discovery of flowering time genes in Brassica oleracea.
Autorzy:
Vos RA; Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA, Leiden, The Netherlands. .; Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands. .
van der Veen-van Wijk CAM; Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
Schranz ME; Biosystematics Group, Wageningen University and Research, P.O. Box 16, 6700AP, Wageningen, The Netherlands.
Vrieling K; Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
Klinkhamer PGL; Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
Lens F; Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA, Leiden, The Netherlands.; Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
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Źródło:
Plant methods [Plant Methods] 2022 Jul 04; Vol. 18 (1), pp. 92. Date of Electronic Publication: 2022 Jul 04.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Genetic analysis reveals three novel QTLs underpinning a butterfly egg-induced hypersensitive response-like cell death in Brassica rapa.
Autorzy:
Bassetti N; Biosystematics Group, Wageningen University & Research, Wageningen, The Netherlands.
Caarls L; Biosystematics Group, Wageningen University & Research, Wageningen, The Netherlands.; Laboratory of Plant Breeding, Wageningen University & Research, Wageningen, The Netherlands.
Bukovinszkine'Kiss G; Biosystematics Group, Wageningen University & Research, Wageningen, The Netherlands.; Laboratory of Genetics, Wageningen University & Research, Wageningen, The Netherlands.
El-Soda M; Department of Genetics, Faculty of Agriculture, Cairo University, Giza, Egypt.
van Veen J; Biosystematics Group, Wageningen University & Research, Wageningen, The Netherlands.
Bouwmeester K; Biosystematics Group, Wageningen University & Research, Wageningen, The Netherlands.; Laboratory of Entomology, Wageningen University & Research, Wageningen, The Netherlands.
Zwaan BJ; Laboratory of Genetics, Wageningen University & Research, Wageningen, The Netherlands.
Schranz ME; Biosystematics Group, Wageningen University & Research, Wageningen, The Netherlands.
Bonnema G; Laboratory of Plant Breeding, Wageningen University & Research, Wageningen, The Netherlands.
Fatouros NE; Biosystematics Group, Wageningen University & Research, Wageningen, The Netherlands. .
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Źródło:
BMC plant biology [BMC Plant Biol] 2022 Mar 24; Vol. 22 (1), pp. 140. Date of Electronic Publication: 2022 Mar 24.
Typ publikacji:
Journal Article
MeSH Terms:
Brassica rapa*/genetics
Butterflies*
Cell Death*
Quantitative Trait Loci*
Ovum/*chemistry
Animals
Czasopismo naukowe
Tytuł:
Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids.
Autorzy:
Bayer PE; School of Biological Sciences and the Institute of Agriculture, Faculty of Science, The University of Western Australia, Crawley, WA, Australia.
Scheben A; School of Biological Sciences and the Institute of Agriculture, Faculty of Science, The University of Western Australia, Crawley, WA, Australia.
Golicz AA; Plant Molecular Biology and Biotechnology Laboratory, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Parkville, VIC, Australia.
Yuan Y; School of Biological Sciences and the Institute of Agriculture, Faculty of Science, The University of Western Australia, Crawley, WA, Australia.
Faure S; Innolea SAS, Mondonville, France.
Lee H; Department of Plant Breeding, IFZ Research Centre for Biosystems, Land Use and Nutrition, Justus Liebig University Giessen, Giessen, Germany.
Chawla HS; Department of Plant Breeding, IFZ Research Centre for Biosystems, Land Use and Nutrition, Justus Liebig University Giessen, Giessen, Germany.
Anderson R; School of Biological Sciences and the Institute of Agriculture, Faculty of Science, The University of Western Australia, Crawley, WA, Australia.
Bancroft I; Department of Biology, University of York, York, UK.
Raman H; NSW Department of Primary Industries, Wagga Wagga Agricultural Institute, PMB, Wagga Wagga, NSW, Australia.
Lim YP; Department of Horticulture, Chungnam National University, Daejeon, South Korea.
Robbens S; BASF Innovation Center, Gent, Belgium.
Jiang L; Institute of crop science, Department of Agronomy and Plant Breeding, Zhejiang University, Hangzhou, China.
Liu S; Chinese Academy of Agricultural Sciences, Oil Crops Research Institute, Wuhan, China.
Barker MS; Department of Ecology & Evolutionary Biology, University of Arizona, Tucson, AZ, USA.
Schranz ME; Biosystematics Group, Wageningen University and Research Center, Wageningen, The Netherlands.
Wang X; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences (IVF, CAAS), Beijing, China.
King GJ; Southern Cross Plant Science, Southern Cross University, Lismore, NSW, Australia.
Pires JC; Division of Biological Sciences, Bond Life Sciences Center, University of Missouri, Columbia, Missouri, USA.
Chalhoub B; Institute of crop science, Department of Agronomy and Plant Breeding, Zhejiang University, Hangzhou, China.
Snowdon RJ; Department of Plant Breeding, IFZ Research Centre for Biosystems, Land Use and Nutrition, Justus Liebig University Giessen, Giessen, Germany.
Batley J; School of Biological Sciences and the Institute of Agriculture, Faculty of Science, The University of Western Australia, Crawley, WA, Australia.
Edwards D; School of Biological Sciences and the Institute of Agriculture, Faculty of Science, The University of Western Australia, Crawley, WA, Australia.
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Źródło:
Plant biotechnology journal [Plant Biotechnol J] 2021 Dec; Vol. 19 (12), pp. 2488-2500. Date of Electronic Publication: 2021 Aug 24.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Brassica*/genetics
Brassica napus*/genetics
Diploidy ; Genome, Plant/genetics ; Polyploidy
Czasopismo naukowe
Tytuł:
Genome and transcriptome analysis of the beet armyworm Spodoptera exigua reveals targets for pest control.
Autorzy:
Simon S; Biosystematics Group, Wageningen University & Research, 6708 PB Wageningen, The Netherlands.
Breeschoten T; Biosystematics Group, Wageningen University & Research, 6708 PB Wageningen, The Netherlands.
Jansen HJ; Future Genomics Technologies, Leiden, The Netherlands.
Dirks RP; Future Genomics Technologies, Leiden, The Netherlands.
Schranz ME; Biosystematics Group, Wageningen University & Research, 6708 PB Wageningen, The Netherlands.
Ros VID; Laboratory of Virology, Wageningen University & Research, 6708 PB Wageningen, The Netherlands.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2021 Oct 19; Vol. 11 (11).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Beta vulgaris*
Animals ; Female ; Gene Expression Profiling ; Larva ; Pest Control ; Pupa ; Spodoptera/genetics
Czasopismo naukowe
Tytuł:
Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales).
Autorzy:
Beric A; Donald Danforth Plant Science Center, St. Louis, MO 63132, USA.; Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA.
Mabry ME; Division of Biological Sciences and Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA.
Harkess AE; Department of Crop, Soil, and Environmental Sciences, Auburn University, Auburn, AL 36849, USA.; HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Brose J; Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA.
Schranz ME; Biosystematics Group, Wageningen University, Wageningen 6700 AA, The Netherlands.
Conant GC; Bioinformatics Research Center, Program in Genetics and Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA.
Edger PP; Department of Horticulture, Michigan State University, East Lansing, MI 48824, USA.; Department of Ecology, Evolutionary Biology and Behavior, Michigan State University, East Lansing, MI 48824, USA.
Meyers BC; Donald Danforth Plant Science Center, St. Louis, MO 63132, USA.; Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA.
Pires JC; Division of Biological Sciences and Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2021 Jul 14; Vol. 11 (7).
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Magnoliopsida*/genetics
Phylogeny ; Evolution, Molecular ; Genome Size ; Polyploidy ; Genome, Plant ; DNA Transposable Elements/genetics ; Plants/genetics
Czasopismo naukowe
Tytuł:
Fibrillarin evolution through the Tree of Life: Comparative genomics and microsynteny network analyses provide new insights into the evolutionary history of Fibrillarin.
Autorzy:
Pereira-Santana A; Unidad de Bioquímica y Biología molecular de plantas, Centro de Investigación Científica de Yucatán, Mérida, Yucatán, México.; Unidad de Biotecnología Industrial, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco, Zapopan, Jalisco, México.; Dirección de Cátedras, Consejo Nacional de Ciencia y Tecnología, Ciudad de México, México.
Gamboa-Tuz SD; Unidad de Biotecnología, Centro de Investigación Científica de Yucatán, Mérida, Yucatán, México.
Zhao T; Bioinformatics and Evolutionary Genomics, VIB-UGent Center for Plant Systems Biology, Gent, Belgium.; Biosystematics Group, Wageningen University and Research, Wageningen, Netherlands.
Schranz ME; Biosystematics Group, Wageningen University and Research, Wageningen, Netherlands.
Vinuesa P; Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México (UNAM), Cuernavaca, Morelos, México.
Bayona A; Unidad de Bioquímica y Biología molecular de plantas, Centro de Investigación Científica de Yucatán, Mérida, Yucatán, México.
Rodríguez-Zapata LC; Unidad de Biotecnología, Centro de Investigación Científica de Yucatán, Mérida, Yucatán, México.
Castano E; Unidad de Bioquímica y Biología molecular de plantas, Centro de Investigación Científica de Yucatán, Mérida, Yucatán, México.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2020 Oct 19; Vol. 16 (10), pp. e1008318. Date of Electronic Publication: 2020 Oct 19 (Print Publication: 2020).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromosomal Proteins, Non-Histone*/chemistry
Chromosomal Proteins, Non-Histone*/classification
Chromosomal Proteins, Non-Histone*/genetics
Chromosomal Proteins, Non-Histone*/metabolism
Methyltransferases*/chemistry
Methyltransferases*/classification
Methyltransferases*/genetics
Methyltransferases*/metabolism
Genomics/*methods
Animals ; Bacteria/genetics ; Conserved Sequence ; Eukaryota/genetics ; Mammals/genetics ; Methylation ; Plants/genetics ; Viruses/genetics
Czasopismo naukowe
Tytuł:
An influential meal: host plant dependent transcriptional variation in the beet armyworm, Spodoptera exigua (Lepidoptera: Noctuidae).
Autorzy:
Breeschoten T; Biosystematics Group, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands. .
Ros VID; Laboratory of Virology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands.
Schranz ME; Biosystematics Group, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands.
Simon S; Biosystematics Group, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands.
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Źródło:
BMC genomics [BMC Genomics] 2019 Nov 13; Vol. 20 (1), pp. 845. Date of Electronic Publication: 2019 Nov 13.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
Herbivory/*genetics
Spodoptera/*genetics
Animals ; Genes, Insect ; Larva/growth & development ; Larva/physiology ; Molecular Sequence Annotation ; Spodoptera/growth & development ; Spodoptera/metabolism ; Spodoptera/physiology
Czasopismo naukowe
Tytuł:
Genome Improvement and Genetic Map Construction for Aethionema arabicum , the First Divergent Branch in the Brassicaceae Family.
Autorzy:
Nguyen TP; Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.
Mühlich C; Faculty of Biology, Plant Cell Biology, University of Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany.
Mohammadin S; Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.
van den Bergh E; Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.
Platts AE; Center for Genomics and Systems Biology, Department of Biology, New York University, New York, and.
Haas FB; Faculty of Biology, Plant Cell Biology, University of Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany.
Rensing SA; Faculty of Biology, Plant Cell Biology, University of Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany, .schranz@wur.nl.; LOEWE Center for Synthetic Microbiology (SYNMIKRO), Philipps University of Marburg, Germany.
Schranz ME; Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands, .schranz@wur.nl.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2019 Nov 05; Vol. 9 (11), pp. 3521-3530. Date of Electronic Publication: 2019 Nov 05.
Typ publikacji:
Journal Article
MeSH Terms:
Chromosome Mapping*
Genome, Plant*
Brassicaceae/*genetics
Genetic Linkage ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Tytuł:
The alternative reality of plant mitochondrial DNA: One ring does not rule them all.
Autorzy:
Kozik A; Genome Center and Department of Plant Sciences, University of California, Davis, California, United States of America.
Rowan BA; Genome Center and Department of Plant Sciences, University of California, Davis, California, United States of America.
Lavelle D; Genome Center and Department of Plant Sciences, University of California, Davis, California, United States of America.
Berke L; Wageningen University & Research, PB Wageningen, Gelderland, The Netherlands.
Schranz ME; Wageningen University & Research, PB Wageningen, Gelderland, The Netherlands.
Michelmore RW; Genome Center and Department of Plant Sciences, University of California, Davis, California, United States of America.
Christensen AC; School of Biological Sciences, University of Nebraska - Lincoln, Lincoln, Nebraska, United States of America.
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Źródło:
PLoS genetics [PLoS Genet] 2019 Aug 30; Vol. 15 (8), pp. e1008373. Date of Electronic Publication: 2019 Aug 30 (Print Publication: 2019).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Chromosome Mapping/*methods
Genome, Plant/*genetics
Mitochondria/*genetics
DNA, Mitochondrial/genetics ; DNA, Plant/genetics ; Genes, Plant/genetics ; Genome, Mitochondrial/genetics ; Lactuca/genetics ; Recombination, Genetic/genetics ; Sequence Analysis, DNA/methods
Czasopismo naukowe
Tytuł:
Origins and geographic diversification of African rice (Oryza glaberrima).
Autorzy:
Veltman MA; Biosystematics Group, Wageningen University and Research, Wageningen, The Netherlands.
Flowers JM; Center for Genomics and Systems Biology, New York University, New York City, New York, United States of America.; Center for Genomics and Systems Biology, New York University Abu Dhabi, Saadiyat Island, Abu Dhabi, United Arab Emirates.
van Andel TR; Biosystematics Group, Wageningen University and Research, Wageningen, The Netherlands.; Naturalis Biodiversity Center, Leiden, The Netherlands.
Schranz ME; Biosystematics Group, Wageningen University and Research, Wageningen, The Netherlands.
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Źródło:
PloS one [PLoS One] 2019 Mar 06; Vol. 14 (3), pp. e0203508. Date of Electronic Publication: 2019 Mar 06 (Print Publication: 2019).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Biological Evolution*
Genetics, Population*
Polymorphism, Single Nucleotide*
Crops, Agricultural/*genetics
Oryza/*genetics
Africa ; Crops, Agricultural/growth & development ; Domestication ; Genes, Plant ; Genome, Plant ; Oryza/growth & development ; Phenotype ; Phylogeography ; Selection, Genetic
Czasopismo naukowe
Tytuł:
Comparative analysis of repetitive sequences among species from the potato and the tomato clades.
Autorzy:
Gaiero P; Laboratory of Genetics, Wageningen University & Research (WUR), Droevendaalsesteeg, PB Wageningen, The Netherlands.; Laboratorio de Evolución y Domesticación de las Plantas, Facultad de Agronomía, Universidad de la República, Garzón, Montevideo, Uruguay.
Vaio M; Laboratorio de Evolución y Domesticación de las Plantas, Facultad de Agronomía, Universidad de la República, Garzón, Montevideo, Uruguay.
Peters SA; Applied Bioinformatics, Department of Bioscience, Wageningen University & Research (WUR), Droevendaalsesteeg, PB Wageningen, The Netherlands.
Schranz ME; Biosystematics Group, Wageningen University & Research (WUR), Droevendaalsesteeg, PB Wageningen, The Netherlands.
de Jong H; Laboratory of Genetics, Wageningen University & Research (WUR), Droevendaalsesteeg, PB Wageningen, The Netherlands.
Speranza PR; Laboratorio de Evolución y Domesticación de las Plantas, Facultad de Agronomía, Universidad de la República, Garzón, Montevideo, Uruguay.
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Źródło:
Annals of botany [Ann Bot] 2019 Feb 15; Vol. 123 (3), pp. 521-532.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Evolution, Molecular*
Genome, Plant*
Repetitive Sequences, Nucleic Acid*
Solanaceae/*genetics
DNA, Plant/analysis ; Solanum lycopersicum/genetics ; Phylogeny ; Sequence Analysis, DNA ; Solanum/genetics
Czasopismo naukowe
Tytuł:
Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds.
Autorzy:
Wilhelmsson PKI; Plant Cell Biology, Faculty of Biology, University of Marburg, 35043, Marburg, Germany.
Chandler JO; School of Biological Sciences, Royal Holloway University of London, Egham, Surrey, TW20 0EX, UK.
Fernandez-Pozo N; Plant Cell Biology, Faculty of Biology, University of Marburg, 35043, Marburg, Germany.
Graeber K; School of Biological Sciences, Royal Holloway University of London, Egham, Surrey, TW20 0EX, UK.
Ullrich KK; Plant Cell Biology, Faculty of Biology, University of Marburg, 35043, Marburg, Germany.; Present Address: Max Planck Institute for Evolutionary Biology, August-Thienemann-Straße 2, 24306, Ploen, Germany.
Arshad W; School of Biological Sciences, Royal Holloway University of London, Egham, Surrey, TW20 0EX, UK.
Khan S; School of Biological Sciences, Royal Holloway University of London, Egham, Surrey, TW20 0EX, UK.
Hofberger JA; Biosystematics Group, Wageningen University, Wageningen, 6708 PB, The Netherlands.
Buchta K; Plant Cell Biology, Faculty of Biology, University of Marburg, 35043, Marburg, Germany.
Edger PP; Department of Horticulture, Michigan State University, East Lansing, MI, 48864, USA.
Pires JC; Division of Biological Sciences, University of Missouri, Columbia, MO, 65211, USA.
Schranz ME; Biosystematics Group, Wageningen University, Wageningen, 6708 PB, The Netherlands.
Leubner-Metzger G; School of Biological Sciences, Royal Holloway University of London, Egham, Surrey, TW20 0EX, UK. .; Laboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Palacký University and Institute of Experimental Botany, Academy of Sciences of the Czech Republic, 78371, Olomouc, Czech Republic. .
Rensing SA; Plant Cell Biology, Faculty of Biology, University of Marburg, 35043, Marburg, Germany. .; BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany. .
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Źródło:
BMC genomics [BMC Genomics] 2019 Jan 30; Vol. 20 (1), pp. 95. Date of Electronic Publication: 2019 Jan 30.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Regulation, Plant*
Transcriptome*
Brassicaceae/*genetics
Brassicaceae/*growth & development
Seeds/*genetics
Seeds/*growth & development
Gene Expression Profiling ; Gene Ontology ; Genome, Plant ; Germination ; High-Throughput Nucleotide Sequencing ; Molecular Sequence Annotation ; Plant Proteins/genetics
Czasopismo naukowe
Tytuł:
Efficient inference of homologs in large eukaryotic pan-proteomes.
Autorzy:
Sheikhizadeh Anari S; Bioinformatics Group, Wageningen University, Wageningen, The Netherlands. .
de Ridder D; Bioinformatics Group, Wageningen University, Wageningen, The Netherlands.
Schranz ME; Biosystematics Group, Wageningen University, Wageningen, The Netherlands.
Smit S; Bioinformatics Group, Wageningen University, Wageningen, The Netherlands.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2018 Sep 26; Vol. 19 (1), pp. 340. Date of Electronic Publication: 2018 Sep 26.
Typ publikacji:
Journal Article
MeSH Terms:
Eukaryota/*metabolism
Proteome/*metabolism
Algorithms ; Brassicaceae/genetics ; Cluster Analysis ; Databases, Protein ; Genes, Plant ; Genome ; Genomics ; Humans ; Sequence Homology, Amino Acid ; Software
Czasopismo naukowe
Tytuł:
Collinearity between potato (Solanum tuberosum L.) and wild relatives assessed by comparative cytogenetic mapping.
Autorzy:
Gaiero P; a Department of Plant Biology, Facultad de Agronomía, Universidad de la República, Garzón 780, PC 12900, Montevideo, Uruguay.; b Laboratory of Genetics, Wageningen University, Droevendaalsesteeg 1, P.O. Box 16, 6708 PB, Wageningen, the Netherlands.
van de Belt J; b Laboratory of Genetics, Wageningen University, Droevendaalsesteeg 1, P.O. Box 16, 6708 PB, Wageningen, the Netherlands.
Vilaró F; c Horticulture Unit, National Institute for Agricultural Research, Ruta 48 km 10, Las Brujas, Uruguay.
Schranz ME; d Biosystematics Group, Wageningen University, Wageningen, the Netherlands.
Speranza P; a Department of Plant Biology, Facultad de Agronomía, Universidad de la República, Garzón 780, PC 12900, Montevideo, Uruguay.
de Jong H; b Laboratory of Genetics, Wageningen University, Droevendaalsesteeg 1, P.O. Box 16, 6708 PB, Wageningen, the Netherlands.
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Źródło:
Genome [Genome] 2017 Mar; Vol. 60 (3), pp. 228-240. Date of Electronic Publication: 2016 Nov 14.
Typ publikacji:
Journal Article
MeSH Terms:
Chromosome Mapping*
Solanum tuberosum/*genetics
Chromosomes, Artificial, Bacterial ; Chromosomes, Plant ; DNA, Plant/genetics ; DNA, Ribosomal/genetics ; Genes, Plant ; Genetic Linkage ; Genetic Variation ; Genome, Plant ; Hybridization, Genetic ; Image Processing, Computer-Assisted ; In Situ Hybridization, Fluorescence ; Models, Genetic ; Plant Breeding ; Solanum/genetics ; Solanum tuberosum/classification ; Species Specificity
Czasopismo naukowe

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