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Tytuł :
Host mitochondrial transcriptome response to SARS-CoV-2 in multiple cell models and clinical samples.
Autorzy :
Miller B; Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Ave, Los Angeles, CA, 90089, USA.
Silverstein A; Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Ave, Los Angeles, CA, 90089, USA.
Flores M; Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Ave, Los Angeles, CA, 90089, USA.
Cao K; Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Ave, Los Angeles, CA, 90089, USA.
Kumagai H; Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Ave, Los Angeles, CA, 90089, USA.; Graduate School of Health and Sports Science, Juntendo University, Chiba, Japan.
Mehta HH; Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Ave, Los Angeles, CA, 90089, USA.
Yen K; Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Ave, Los Angeles, CA, 90089, USA.
Kim SJ; Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Ave, Los Angeles, CA, 90089, USA.
Cohen P; Leonard Davis School of Gerontology, University of Southern California, 3715 McClintock Ave, Los Angeles, CA, 90089, USA. .
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Źródło :
Scientific reports [Sci Rep] 2021 Jan 08; Vol. 11 (1), pp. 3. Date of Electronic Publication: 2021 Jan 08.
Typ publikacji :
Journal Article
MeSH Terms :
SARS-CoV-2*
Transcriptome*
COVID-19/*virology
DNA, Mitochondrial/*genetics
Mitochondria/*genetics
Cell Line ; Humans ; Mitochondria/virology
Czasopismo naukowe
Tytuł :
Gene expression network analysis provides potential targets against SARS-CoV-2.
Autorzy :
Hernández Cordero AI; Centre for Heart Lung Innovation, University of British Columbia, Vancouver, BC, Canada. .
Li X; Centre for Heart Lung Innovation, University of British Columbia, Vancouver, BC, Canada.
Yang CX; Centre for Heart Lung Innovation, University of British Columbia, Vancouver, BC, Canada.
Milne S; Centre for Heart Lung Innovation, University of British Columbia, Vancouver, BC, Canada.; Division of Respiratory Medicine, Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada.; Faculty of Medicine and Health, University of Sydney, Sydney, NSW, Australia.
Bossé Y; Institut Universitaire de Cardiologie et de Pneumologie de Québec, Université Laval, Québec City, QC, Canada.
Joubert P; Institut Universitaire de Cardiologie et de Pneumologie de Québec, Université Laval, Québec City, QC, Canada.
Timens W; Department of Pathology and Medical Biology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
van den Berge M; Department of Pulmonary Diseases, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Nickle D; Merck Research Laboratories, Genetics and Pharmacogenomics, Boston, MA, USA.
Hao K; Department of Genetics and Genomic Sciences and Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine At Mount Sinai, New York, NY, USA.
Sin DD; Centre for Heart Lung Innovation, University of British Columbia, Vancouver, BC, Canada.; Division of Respiratory Medicine, Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada.
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Źródło :
Scientific reports [Sci Rep] 2020 Dec 14; Vol. 10 (1), pp. 21863. Date of Electronic Publication: 2020 Dec 14.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Transcriptome*
COVID-19/*metabolism
Lung/*metabolism
Receptors, Coronavirus/*metabolism
Adult ; Aged ; Angiotensin-Converting Enzyme 2/metabolism ; Cohort Studies ; Databases, Chemical ; Female ; Humans ; Lung/pathology ; Male ; Middle Aged ; Serine Endopeptidases/metabolism
Czasopismo naukowe
Tytuł :
Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish.
Autorzy :
Demin KA; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia. .; Institute of Experimental Medicine, Almazov National Medical Research Centre, Ministry of Healthcare of Russian Federation, Saint-Petersburg, Russia. .
Lakstygal AM; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia.
Krotova NA; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia.; Institute of Experimental Medicine, Almazov National Medical Research Centre, Ministry of Healthcare of Russian Federation, Saint-Petersburg, Russia.
Masharsky A; Core Facility Centre for Molecular and Cell Technologies, St. Petersburg State University, Saint-Petersburg, Russia.
Tagawa N; Department of Biophysics and Biochemistry, Graduate School of Science, University of Tokyo, Tokyo, Japan.
Chernysh MV; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia.
Ilyin NP; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia.
Taranov AS; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia.
Galstyan DS; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia.; Laboratory of Preclinical Bioscreening, Granov Russian Research Center of Radiology and Surgical Technologies, Ministry of Healthcare of Russian Federation, Pesochny, Russia.
Derzhavina KA; Institute of Experimental Medicine, Almazov National Medical Research Centre, Ministry of Healthcare of Russian Federation, Saint-Petersburg, Russia.
Levchenko NA; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia.
Kolesnikova TO; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia.
Mor MS; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia.
Vasyutina ML; Institute of Experimental Medicine, Almazov National Medical Research Centre, Ministry of Healthcare of Russian Federation, Saint-Petersburg, Russia.
Efimova EV; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia.
Katolikova N; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia.; Institute of Cytology RAS, Saint-Petersburg, Russia.
Prjibelski AD; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, Saint-Petersburg, Russia.
Gainetdinov RR; Institute of Translational Biomedicine, St. Petersburg State University, University Emb. 7-9, Saint-Petersburg, Russia.
de Abreu MS; University of Passo Fundo, Passo Fundo, Brazil.
Amstislavskaya TG; Laboratory of Biopsychiatry, Scientific Research Institute of Physiology and Basic Medicine, Novosibirsk, Russia.; School of Medicine and Psychology, Novosibirsk State University, Novosibirsk, Russia.
Strekalova T; Department of Psychiatry and Neuropsychology, Maastricht University, Maastricht, The Netherlands.; Laboratory of Psychiatric Neurobiology, Institute of Molecular Medicine, I.M. Sechenov First Moscow State Medical University, Moscow, Russia.; Division of Molecular Psychiatry, Centre of Mental Health, University of Würzburg, Würzburg, Germany.
Kalueff AV; School of Pharmacy, Southwest University, Chongqing, China. .; Ural Federal University, Ekaterinburg, Russia. .; Laboratory of Cell and Molecular Biology and Neurobiology, Moscow Institute of Physics and Technology, Dolgoprudny, Russia. .
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Źródło :
Scientific reports [Sci Rep] 2020 Nov 17; Vol. 10 (1), pp. 19981. Date of Electronic Publication: 2020 Nov 17.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Behavior, Animal/*physiology
Stress, Psychological/*physiopathology
Transcriptome/*physiology
Zebrafish/*physiology
Animals ; Antidepressive Agents/pharmacology ; Anxiety/drug therapy ; Anxiety/physiopathology ; Behavior, Animal/drug effects ; Brain/drug effects ; Brain/physiopathology ; Disease Models, Animal ; Female ; Fluoxetine/pharmacology ; Male ; Stress, Psychological/drug therapy ; Transcriptome/drug effects
Czasopismo naukowe
Tytuł :
The effect of Rbfox2 modulation on retinal transcriptome and visual function.
Autorzy :
Gu L; Stein Eye Institute, University of California, Los Angeles, 100 Stein Plaza, Los Angeles, CA, 90095, USA.
Kawaguchi R; Department of Psychiatry and Neurology, University of California, Los Angeles, Los Angeles, CA, 90095, USA.
Caprioli J; Stein Eye Institute, University of California, Los Angeles, 100 Stein Plaza, Los Angeles, CA, 90095, USA.; Brain Research Institute, University of California, Los Angeles, Los Angeles, CA, 90095, USA.
Piri N; Stein Eye Institute, University of California, Los Angeles, 100 Stein Plaza, Los Angeles, CA, 90095, USA. .; Brain Research Institute, University of California, Los Angeles, Los Angeles, CA, 90095, USA. .
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Źródło :
Scientific reports [Sci Rep] 2020 Nov 12; Vol. 10 (1), pp. 19683. Date of Electronic Publication: 2020 Nov 12.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Transcriptome*
RNA Splicing Factors/*metabolism
Retina/*metabolism
Vision, Ocular/*physiology
Animals ; Circadian Rhythm ; Depth Perception ; Gene Expression Regulation ; Mice ; Mice, Knockout ; Mice, Transgenic ; Pupil/physiology ; RNA Splicing Factors/genetics ; RNA-Seq ; Retina/growth & development
Czasopismo naukowe
Tytuł :
Interactions between the microbiome and mating influence the female's transcriptional profile in Drosophila melanogaster.
Autorzy :
Delbare SYN; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA. .
Ahmed-Braimah YH; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.; Department of Biology, Syracuse University, Syracuse, NY, 13244, USA.
Wolfner MF; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.
Clark AG; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 23; Vol. 10 (1), pp. 18168. Date of Electronic Publication: 2020 Oct 23.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Drosophila melanogaster/*physiology
Germ-Free Life/*physiology
Microbiota/*physiology
Sexual Behavior, Animal/*physiology
Transcriptome/*immunology
Animals ; Axenic Culture ; Drosophila melanogaster/microbiology ; Female ; Fertility/physiology ; Host Microbial Interactions/genetics ; Host Microbial Interactions/immunology ; Immunity, Innate/genetics ; Male ; RNA-Seq ; Reproduction/physiology
Czasopismo naukowe
Tytuł :
Reference transcriptomes and comparative analyses of six species in the threatened rosewood genus Dalbergia.
Autorzy :
Hung TH; Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK. .
So T; Institute of Forest and Wildlife Research and Development, Phnom Penh, Cambodia.
Sreng S; Institute of Forest and Wildlife Research and Development, Phnom Penh, Cambodia.
Thammavong B; Forest Research Center, National Agriculture and Forestry Research Institute, Vientiane, Lao PDR.
Boounithiphonh C; Forest Research Center, National Agriculture and Forestry Research Institute, Vientiane, Lao PDR.
Boshier DH; Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK.
MacKay JJ; Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK. .
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 20; Vol. 10 (1), pp. 17749. Date of Electronic Publication: 2020 Oct 20.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genetic Variation*
Transcriptome*
DNA, Plant/*genetics
Dalbergia/*genetics
Conservation of Natural Resources ; Endangered Species
Czasopismo naukowe
Tytuł :
Petal abscission in fragrant roses is associated with large scale differential regulation of the abscission zone transcriptome.
Autorzy :
Singh P; Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001, India. .; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India. .
Bharti N; Bioinformatics Centre, Savitribai Phule Pune University, Pune, 411007, India.; High Performance Computing-Medical and Bioinformatics Applications Group, Centre for Development of Advanced Computing, Pune, 411008, India.
Singh AP; Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001, India.; National Institute for Plant Genome Research, New Delhi, 110067, India.
Tripathi SK; Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001, India.; National Centre for Natural Products Research, School of Pharmacy, University of Mississippi, Oxford, MS, 38677, USA.
Pandey SP; Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001, India.; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
Chauhan AS; Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001, India.; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
Kulkarni A; Bioinformatics Centre, Savitribai Phule Pune University, Pune, 411007, India.
Sane AP; Molecular Biology and Biotechnology, CSIR-National Botanical Research Institute, Lucknow, 226001, India. .; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India. .
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 14; Vol. 10 (1), pp. 17196. Date of Electronic Publication: 2020 Oct 14.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Flowers/*genetics
Gene Expression Regulation, Plant/*genetics
Rosa/*genetics
Transcriptome/*genetics
Down-Regulation/genetics ; Ethylenes/metabolism ; F-Box Proteins/genetics ; F-Box Proteins/metabolism ; Flowers/metabolism ; Indoleacetic Acids/metabolism ; Phosphoric Monoester Hydrolases/genetics ; Phosphoric Monoester Hydrolases/metabolism ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Rosa/metabolism ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Up-Regulation/genetics
Czasopismo naukowe
Tytuł :
De novo transcriptome analysis of the critically endangered alpine Himalayan herb Nardostachys jatamansi reveals the biosynthesis pathway genes of tissue-specific secondary metabolites.
Autorzy :
Dhiman N; Division of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, H.P., 176061, India.; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
Kumar A; Chemical Technology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, H.P., 176061, India.
Kumar D; Chemical Technology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, H.P., 176061, India.
Bhattacharya A; Division of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, H.P., 176061, India. .; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India. .
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 14; Vol. 10 (1), pp. 17186. Date of Electronic Publication: 2020 Oct 14.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Biosynthetic Pathways/*genetics
Nardostachys/*genetics
Plants, Medicinal/*genetics
Secondary Metabolism/*genetics
Transcriptome/*genetics
Flowers/genetics ; Gene Expression Profiling/methods ; Gene Expression Regulation, Plant/genetics ; Gene Ontology ; Genes, Plant/genetics ; Plant Leaves/genetics ; Plant Roots/genetics ; Rhizome/genetics
Czasopismo naukowe
Tytuł :
Early-pregnancy transcriptome signatures of preeclampsia: from peripheral blood to placenta.
Autorzy :
Yadama AP; Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Maiorino E; Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Carey VJ; Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
McElrath TF; Division of Maternal Fetal-Medicine, Department of Obstetrics and Gynecology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Litonjua AA; Division of Pediatric Pulmonary Medicine, Golisano Children's Hospital at University of Rochester Medical Center, Rochester, NY, USA.
Loscalzo J; Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Weiss ST; Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Mirzakhani H; Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA. .
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 12; Vol. 10 (1), pp. 17029. Date of Electronic Publication: 2020 Oct 12.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Transcriptome*
Asthma/*metabolism
Placenta/*metabolism
Pre-Eclampsia/*metabolism
Vitamin D Deficiency/*metabolism
Adult ; Asthma/blood ; Asthma/genetics ; Body Mass Index ; Chemokines/metabolism ; Female ; Humans ; Pre-Eclampsia/blood ; Pre-Eclampsia/genetics ; Pregnancy ; Pregnancy Trimester, First ; Pregnancy Trimester, Second ; Vitamin D/blood ; Vitamin D Deficiency/blood ; Vitamin D Deficiency/genetics ; Young Adult
Czasopismo naukowe
Tytuł :
Circadian regulation of diel vertical migration (DVM) and metabolism in Antarctic krill Euphausia superba.
Autorzy :
Piccolin F; Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Section Polar Biological Oceanography, Am Handelshafen 12, 27570, Bremerhaven, Germany. .
Pitzschler L; Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Section Polar Biological Oceanography, Am Handelshafen 12, 27570, Bremerhaven, Germany.
Biscontin A; Department of Biology, University of Padova, Via Ugo Bassi 58/b, 35121, Padova, Italy.
Kawaguchi S; Australian Antarctic Division, Department of the Environment and Energy, 203 Channel Hwy, Kingston, TAS, 7050, Australia.
Meyer B; Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Section Polar Biological Oceanography, Am Handelshafen 12, 27570, Bremerhaven, Germany. .; Institute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Carl-von-Ossietzky-Strasse 9-11, 26111, Oldenburg, Germany. .; Helmholtz Institute for Functional Marine Biodiversity at the University of Oldenburg, Ammerländer Heerstrasse 231, 26129, Oldenburg, Germany. .
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 08; Vol. 10 (1), pp. 16796. Date of Electronic Publication: 2020 Oct 08.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Ecosystem*
Photoperiod*
Transcriptome*
Behavior, Animal/*physiology
Circadian Rhythm/*physiology
Euphausiacea/*physiology
Animals ; Antarctic Regions ; Oceans and Seas ; Oxygen Consumption/physiology
Czasopismo naukowe
Tytuł :
Analysis of Plasmodium vivax schizont transcriptomes from field isolates reveals heterogeneity of expression of genes involved in host-parasite interactions.
Autorzy :
Siegel SV; Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, CB10 1SA, UK.
Chappell L; Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, CB10 1SA, UK.
Hostetler JB; Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, CB10 1SA, UK.; Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.; National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Amaratunga C; Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.; Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bankgok, Thailand.; Center for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Suon S; National Center for Parasitology, Entomology, and Malaria Control, Phnom Penh, Cambodia.
Böhme U; Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, CB10 1SA, UK.
Berriman M; Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, CB10 1SA, UK.
Fairhurst RM; Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.; AstraZeneca, Gaithersburg, MD, 20878, USA.
Rayner JC; Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, CB10 1SA, UK. .; Cambridge Institute for Medical Research, Cambridge Biomedical Campus, Cambridge, CB2 0XY, UK. .
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 07; Vol. 10 (1), pp. 16667. Date of Electronic Publication: 2020 Oct 07.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Regulation*
Transcriptome*
Host-Parasite Interactions/*genetics
Plasmodium vivax/*genetics
Schizonts/*genetics
Humans ; Malaria, Vivax/parasitology ; Merozoites/genetics ; Plasmodium vivax/isolation & purification ; Schizonts/isolation & purification
Czasopismo naukowe
Tytuł :
M1 Macrophage and M1/M2 ratio defined by transcriptomic signatures resemble only part of their conventional clinical characteristics in breast cancer.
Autorzy :
Oshi M; Breast Surgery, Department of Surgical Oncology, Roswell Park Comprehensive Cancer Center, Elm & Carlton Streets, Buffalo, NY, 14263, USA.; Department of Gastroenterological Surgery, Yokohama City University Graduate School of Medicine, Yokohama, 236-0004, Japan.
Tokumaru Y; Breast Surgery, Department of Surgical Oncology, Roswell Park Comprehensive Cancer Center, Elm & Carlton Streets, Buffalo, NY, 14263, USA.; Department of Surgical Oncology, Graduate School of Medicine, Gifu University, 1-1 Yanagido, Gifu, 501-1194, Japan.
Asaoka M; Breast Surgery, Department of Surgical Oncology, Roswell Park Comprehensive Cancer Center, Elm & Carlton Streets, Buffalo, NY, 14263, USA.; Department of Breast Oncology and Surgery, Tokyo Medical University, 6-7-1 Nishishinjuku, Shinjuku, Tokyo, 160-8402, Japan.
Yan L; Department of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, 14263, USA.
Satyananda V; Department of Surgical Oncology, Roswell Park Comprehensive Cancer Center, Buffalo, NY, 14263, USA.
Matsuyama R; Department of Gastroenterological Surgery, Yokohama City University Graduate School of Medicine, Yokohama, 236-0004, Japan.
Matsuhashi N; Department of Surgical Oncology, Graduate School of Medicine, Gifu University, 1-1 Yanagido, Gifu, 501-1194, Japan.
Futamura M; Department of Surgical Oncology, Graduate School of Medicine, Gifu University, 1-1 Yanagido, Gifu, 501-1194, Japan.
Ishikawa T; Department of Breast Oncology and Surgery, Tokyo Medical University, 6-7-1 Nishishinjuku, Shinjuku, Tokyo, 160-8402, Japan.
Yoshida K; Department of Surgical Oncology, Graduate School of Medicine, Gifu University, 1-1 Yanagido, Gifu, 501-1194, Japan.
Endo I; Department of Gastroenterological Surgery, Yokohama City University Graduate School of Medicine, Yokohama, 236-0004, Japan.
Takabe K; Breast Surgery, Department of Surgical Oncology, Roswell Park Comprehensive Cancer Center, Elm & Carlton Streets, Buffalo, NY, 14263, USA. .; Department of Gastroenterological Surgery, Yokohama City University Graduate School of Medicine, Yokohama, 236-0004, Japan. .; Department of Breast Oncology and Surgery, Tokyo Medical University, 6-7-1 Nishishinjuku, Shinjuku, Tokyo, 160-8402, Japan. .; Department of Surgery, University At Buffalo Jacobs School of Medicine and Biomedical Sciences, The State University of New York, Buffalo, NY, 14263, USA. .; Department of Surgery, Niigata University Graduate School of Medical and Dental Sciences, Niigata, 951-8510, Japan. .; Department of Breast Surgery, Fukushima Medical University School of Medicine, Fukushima, 960-1295, Japan. .
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 06; Vol. 10 (1), pp. 16554. Date of Electronic Publication: 2020 Oct 06.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Databases, Factual*
Breast Neoplasms/*genetics
Breast Neoplasms/*immunology
Macrophages/*immunology
Transcriptome/*genetics
Tumor Microenvironment/*genetics
Tumor Microenvironment/*immunology
Breast Neoplasms/mortality ; Breast Neoplasms/pathology ; Cell Cycle/genetics ; Cell Cycle/immunology ; Cell Proliferation/genetics ; Female ; Humans ; Retrospective Studies ; Survival Rate
Czasopismo naukowe
Tytuł :
Integrated transcriptomic and metabolomic data reveal the flavonoid biosynthesis metabolic pathway in Perilla frutescens (L.) leaves.
Autorzy :
Jiang T; Institute of Cash Crops, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, 050051, Hebei, China.
Guo K; Institute of Chinese Herbal Medicines, Hubei Academy of Agricultural Sciences, Enshi, 445000, Hubei, China.
Liu L; Institute of Cash Crops, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, 050051, Hebei, China.
Tian W; Institute of Cash Crops, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, 050051, Hebei, China.
Xie X; Institute of Cash Crops, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, 050051, Hebei, China.
Wen S; Institute of Cash Crops, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, 050051, Hebei, China.
Wen C; Institute of Cash Crops, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, 050051, Hebei, China. .
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 01; Vol. 10 (1), pp. 16207. Date of Electronic Publication: 2020 Oct 01.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Metabolic Networks and Pathways*
Metabolome*
Transcriptome*
Flavonoids/*biosynthesis
Perilla frutescens/*metabolism
Plant Leaves/*metabolism
Plant Proteins/*metabolism
Computational Biology ; Flavonoids/genetics ; Gene Expression Regulation, Plant ; Molecular Sequence Annotation ; Perilla frutescens/genetics ; Perilla frutescens/growth & development ; Plant Leaves/genetics ; Plant Leaves/growth & development ; Plant Proteins/genetics
Czasopismo naukowe
Tytuł :
Top-ranked expressed gene transcripts of human protein-coding genes investigated with GTEx dataset.
Autorzy :
Tung KF; Institute of Biomedical Sciences, Academia Sinica, Taipei, 115, Taiwan, ROC.
Pan CY; Institute of Biomedical Sciences, Academia Sinica, Taipei, 115, Taiwan, ROC.; Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan, ROC.
Chen CH; Institute of Biomedical Sciences, Academia Sinica, Taipei, 115, Taiwan, ROC.
Lin WC; Institute of Biomedical Sciences, Academia Sinica, Taipei, 115, Taiwan, ROC. .; Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan, ROC. .
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 01; Vol. 10 (1), pp. 16245. Date of Electronic Publication: 2020 Oct 01.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Datasets as Topic*
Transcriptome*/genetics
Genes/*genetics
Proteins/*genetics
Gene Expression ; Gene Expression Profiling/methods ; Humans
Czasopismo naukowe
Tytuł :
Comparative transcriptome analysis to identify candidate genes involved in 2-methoxy-1,4-naphthoquinone (MNQ) biosynthesis in Impatiens balsamina L.
Autorzy :
Foong LC; School of Biosciences, Faculty of Health and Medical Sciences, Taylor's University, Jalan Taylors, 47500, Subang Jaya, Selangor, Malaysia.; Faculty of Applied Sciences, UCSI University, Jalan Puncak Menara Gading, UCSI Heights, 56000, Cheras, Wilayah Persekutuan Kuala Lumpur, Malaysia.
Chai JY; School of Biosciences, Faculty of Health and Medical Sciences, Taylor's University, Jalan Taylors, 47500, Subang Jaya, Selangor, Malaysia.
Ho ASH; School of Biosciences, Faculty of Health and Medical Sciences, Taylor's University, Jalan Taylors, 47500, Subang Jaya, Selangor, Malaysia.
Yeo BPH; Fairview International School, Lot 4178, Jalan 1/27d, Seksyen 6 Wangsa Maju, 53300, Kuala Lumpur, Wilayah Persekutuan Kuala Lumpur, Malaysia.
Lim YM; Department of Pre-Clinical Sciences, Faculty of Medicine and Health Sciences, Universiti Tunku Abdul Rahman, Lot PT 21144, Jalan Sungai Long, Bandar Sungai Long, 43000, Kajang, Selangor, Malaysia.
Tam SM; School of Biosciences, Faculty of Health and Medical Sciences, Taylor's University, Jalan Taylors, 47500, Subang Jaya, Selangor, Malaysia. .
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Źródło :
Scientific reports [Sci Rep] 2020 Sep 30; Vol. 10 (1), pp. 16123. Date of Electronic Publication: 2020 Sep 30.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Impatiens/*genetics
Naphthoquinones/*metabolism
Transcriptome/*genetics
Flowers/genetics ; Flowers/metabolism ; Gene Expression Profiling/methods ; Gene Expression Regulation, Plant/genetics ; Gene Ontology ; Impatiens/metabolism ; Molecular Sequence Annotation/methods ; Plant Leaves/genetics ; Plant Leaves/metabolism ; Plants, Medicinal/genetics ; Plants, Medicinal/metabolism
Czasopismo naukowe
Tytuł :
High-fat diet and estrogen impacts the colon and its transcriptome in a sex-dependent manner.
Autorzy :
Hases L; Science for Life Laboratory, Department of Protein Science, KTH Royal Institute of Technology, Solna, Sweden.; Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.
Archer A; Science for Life Laboratory, Department of Protein Science, KTH Royal Institute of Technology, Solna, Sweden.; Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.
Indukuri R; Science for Life Laboratory, Department of Protein Science, KTH Royal Institute of Technology, Solna, Sweden.; Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.
Birgersson M; Science for Life Laboratory, Department of Protein Science, KTH Royal Institute of Technology, Solna, Sweden.; Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.
Savva C; Department of Medicine, Metabolism Unit and Integrated CardioMetabolic Center (ICMC), Karolinska Institutet and Karolinska University Hospital Huddinge, Stockholm, Sweden.
Korach-André M; Department of Medicine, Metabolism Unit and Integrated CardioMetabolic Center (ICMC), Karolinska Institutet and Karolinska University Hospital Huddinge, Stockholm, Sweden.
Williams C; Science for Life Laboratory, Department of Protein Science, KTH Royal Institute of Technology, Solna, Sweden. .; Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden. .
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Źródło :
Scientific reports [Sci Rep] 2020 Sep 30; Vol. 10 (1), pp. 16160. Date of Electronic Publication: 2020 Sep 30.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Diet, High-Fat*
Colon/*metabolism
Estradiol/*pharmacology
Estrogen Receptor beta/*agonists
Obesity/*metabolism
Transcriptome/*drug effects
Animals ; Blood Glucose/metabolism ; Cell Proliferation/drug effects ; Colon/drug effects ; Female ; Gene Expression/drug effects ; Male ; Mice ; Nitriles/pharmacology ; Sex Factors
Czasopismo naukowe
Tytuł :
SV-HotSpot: detection and visualization of hotspots targeted by structural variants associated with gene expression.
Autorzy :
Eteleeb AM; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63110, USA.; Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Quigley DA; Department of Urology, University of California San Francisco (UCSF), San Francisco, CA, 94158, USA.; Helen Diller Family Comprehensive Cancer Center, University of California San Francisco (UCSF), San Francisco, CA, 94158, USA.
Zhao SG; Department of Radiation Oncology, University of Michigan, Ann Arbor, MI, 48109, USA.
Pham D; Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Yang R; The Hormel Institute, University of Minnesota, Austin, MN, 55912, USA.
Dehm SM; Masonic Cancer Center, University of Minnesota, Minneapolis, MN, 55455, USA.; Department of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN, 55455, USA.
Luo J; Department of Surgery, Washington University School of Medicine, St. Louis, MO, 63110, USA.; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Feng FY; Helen Diller Family Comprehensive Cancer Center, University of California San Francisco (UCSF), San Francisco, CA, 94158, USA.; Department of Radiation Oncology, University of California San Francisco (UCSF), San Francisco, CA, 94143, USA.
Dang HX; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63110, USA.; Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, 63110, USA.; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Maher CA; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63110, USA. .; Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, 63110, USA. .; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, 63110, USA. .; Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, 63105, USA. .
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Źródło :
Scientific reports [Sci Rep] 2020 Sep 28; Vol. 10 (1), pp. 15890. Date of Electronic Publication: 2020 Sep 28.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA Copy Number Variations*
Genomic Structural Variation*
Transcriptome*
Prostatic Neoplasms, Castration-Resistant/*genetics
Genome, Human ; Humans ; Male ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł :
SMRT sequencing of the full-length transcriptome of Odontotermes formosanus (Shiraki) under Serratia marcescens treatment.
Autorzy :
Feng K; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, 210037, China.; College of Forestry, Nanjing Forestry University, Nanjing, 210037, China.
Lu X; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, 210037, China.; College of Forestry, Nanjing Forestry University, Nanjing, 210037, China.
Luo J; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, 210037, China.; College of Forestry, Nanjing Forestry University, Nanjing, 210037, China.
Tang F; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, 210037, China. .; College of Forestry, Nanjing Forestry University, Nanjing, 210037, China. .
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Źródło :
Scientific reports [Sci Rep] 2020 Sep 28; Vol. 10 (1), pp. 15909. Date of Electronic Publication: 2020 Sep 28.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Serratia marcescens*
Transcriptome*
Isoptera/*genetics
Serratia Infections/*microbiology
Animals ; High-Throughput Nucleotide Sequencing ; Isoptera/microbiology
Czasopismo naukowe
Tytuł :
Yeast Ppz1 protein phosphatase toxicity involves the alteration of multiple cellular targets.
Autorzy :
Velázquez D; Institut de Biotecnologia i Biomedicina & Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain.
Albacar M; Institut de Biotecnologia i Biomedicina & Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain.
Zhang C; Institut de Biotecnologia i Biomedicina & Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain.
Calafí C; Institut de Biotecnologia i Biomedicina & Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain.
López-Malo M; Institut de Biotecnologia i Biomedicina & Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain.; Institute of Bioengineering, School of Engineering, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland.
Torres-Torronteras J; Research Group on Neuromuscular and Mitochondrial Diseases, Vall d'Hebron Research Institute, Universitat Autònoma de Barcelona, Barcelona, and Biomedical Network Research Centre on Rare Diseases (CIBERER), Instituto de Salud Carlos III, Barcelona, Spain.
Martí R; Research Group on Neuromuscular and Mitochondrial Diseases, Vall d'Hebron Research Institute, Universitat Autònoma de Barcelona, Barcelona, and Biomedical Network Research Centre on Rare Diseases (CIBERER), Instituto de Salud Carlos III, Barcelona, Spain.
Kovalchuk SI; Department of Biochemistry & Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense, Denmark.; Laboratory of Bioinformatic Approaches in Combinatorial Chemistry and Biology, Department of Functioning of Living Systems, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia.
Pinson B; Bordeaux University, IBGC CNRS UMR 5095, Bordeaux, France.; Service Analyses Metaboliques TBMcore CNRS UMS3427/INSERM US05, Université de Bordeaux, Bordeaux, France.
Jensen ON; Department of Biochemistry & Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense, Denmark.
Daignan-Fornier B; Bordeaux University, IBGC CNRS UMR 5095, Bordeaux, France.
Casamayor A; Institut de Biotecnologia i Biomedicina & Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain.
Ariño J; Institut de Biotecnologia i Biomedicina & Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain. .
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Źródło :
Scientific reports [Sci Rep] 2020 Sep 24; Vol. 10 (1), pp. 15613. Date of Electronic Publication: 2020 Sep 24.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Regulation, Fungal*
Metabolome*
Transcriptome*
Phosphoprotein Phosphatases/*metabolism
Saccharomyces cerevisiae/*metabolism
Saccharomyces cerevisiae Proteins/*metabolism
Cell Cycle ; DNA Damage ; Phosphoprotein Phosphatases/genetics ; Phosphorylation ; Reactive Oxygen Species ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/growth & development ; Saccharomyces cerevisiae Proteins/genetics
Czasopismo naukowe
Tytuł :
Transcriptome of peanut kernel and shell reveals the mechanism of calcium on peanut pod development.
Autorzy :
Yang S; Biotechnology Research Center, Shandosng Academy of Agricultural Sciences, Jinan, 250100, People's Republic of China.
Wang J; Biotechnology Research Center, Shandosng Academy of Agricultural Sciences, Jinan, 250100, People's Republic of China.
Tang Z; Biotechnology Research Center, Shandosng Academy of Agricultural Sciences, Jinan, 250100, People's Republic of China.
Guo F; Biotechnology Research Center, Shandosng Academy of Agricultural Sciences, Jinan, 250100, People's Republic of China.
Zhang Y; College of Life and Environment Sciences, HuangShan University, Huangshan City, China.
Zhang J; Biotechnology Research Center, Shandosng Academy of Agricultural Sciences, Jinan, 250100, People's Republic of China.
Meng J; Biotechnology Research Center, Shandosng Academy of Agricultural Sciences, Jinan, 250100, People's Republic of China.
Zheng L; College of Life and Environment Sciences, HuangShan University, Huangshan City, China. .
Wan S; Shandong Academy of Agricultural Sciences/Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100, People's Republic of China. .
Li X; Biotechnology Research Center, Shandosng Academy of Agricultural Sciences, Jinan, 250100, People's Republic of China. .
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Źródło :
Scientific reports [Sci Rep] 2020 Sep 24; Vol. 10 (1), pp. 15723. Date of Electronic Publication: 2020 Sep 24.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Regulation, Plant*
Transcriptome*
Arachis/*genetics
Calcium/*metabolism
Arachis/metabolism ; Fruit/genetics ; Gene Expression Profiling ; Seeds/genetics
Czasopismo naukowe

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