Autor: "Searle, Brian C." - OpacWWW

Skocz do pozycji: 1 1.

Tytuł :: Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries.
Autorzy :: Pino LK; Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Just SC; Proteome Software, Inc. Portland, Oregon, USA.
MacCoss MJ; Department of Genome Sciences, University of Washington, Seattle, Washington, USA.
Searle BC; Institute for Systems Biology, Seattle, Washington, USA .; Pokaż więcej
Źródło :: Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2020 Jul; Vol. 19 (7), pp. 1088-1103. Date of Electronic Publication: 2020 Apr 20.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 2 2.

Tytuł :: Assessing Protein Sequence Database Suitability Using De Novo Sequencing.
Autorzy :: Johnson RS; Department of Genome Sciences, University of Washington, Seattle, Washington .
Searle BC; Institute for Systems Biology, Seattle, Washington.; Proteome Software, Portland, Oregon.
Nunn BL; Department of Genome Sciences, University of Washington, Seattle, Washington.
Gilmore JM; Department of Genome Sciences, University of Washington, Seattle, Washington.
Phillips M; Department of Biology, University of Washington, Seattle, Washington.; School of Natural Sciences, University of California, Merced, California.
Amemiya CT; School of Natural Sciences, University of California, Merced, California.
Heck M; United States Department of Agriculture, Agricultural Research Service, Ithaca, New York.
MacCoss MJ; Department of Genome Sciences, University of Washington, Seattle, Washington.; Pokaż więcej
Źródło :: Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2020 Jan; Vol. 19 (1), pp. 198-208. Date of Electronic Publication: 2019 Nov 15.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :: Databases, Protein*
Proteome/*analysis
Proteomics/*methods
Sequence Analysis, Protein/*methods
Tandem Mass Spectrometry/*methods
Algorithms ; Amino Acid Sequence ; Animals ; Caenorhabditis elegans ; Hemiptera ; Humans ; K562 Cells ; Peptides/analysis ; Proteins/analysis ; Skates, Fish ; Software ; Ursidae
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 3 3.

Tytuł :: Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments.
Autorzy :: Searle BC; From the ‡Department of Genome Sciences, University of Washington, Seattle, Washington 98195; §Proteome Software Inc., Portland, OR 97219.
Egertson JD; From the ‡Department of Genome Sciences, University of Washington, Seattle, Washington 98195;
Bollinger JG; From the ‡Department of Genome Sciences, University of Washington, Seattle, Washington 98195;
Stergachis AB; From the ‡Department of Genome Sciences, University of Washington, Seattle, Washington 98195;
MacCoss MJ; From the ‡Department of Genome Sciences, University of Washington, Seattle, Washington 98195; .; Pokaż więcej
Źródło :: Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2015 Sep; Vol. 14 (9), pp. 2331-40. Date of Electronic Publication: 2015 Jun 22.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :: Peptides/*chemistry
Peptides/*metabolism
Algorithms ; Humans ; Mass Spectrometry/methods ; Neural Networks, Computer ; Proteomics/methods ; Software
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 4 4.

Tytuł :: The mzIdentML data standard for mass spectrometry-based proteomics results.
Autorzy :: Jones AR; Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZJ, UK. />Eisenacher M
Mayer G
Kohlbacher O
Siepen J
Hubbard SJ
Selley JN
Searle BC
Shofstahl J
Seymour SL
Julian R
Binz PA
Deutsch EW
Hermjakob H
Reisinger F
Griss J
Vizcaíno JA
Chambers M
Pizarro A
Creasy D; Pokaż więcej
Źródło :: Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2012 Jul; Vol. 11 (7), pp. M111.014381. Date of Electronic Publication: 2012 Feb 27.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :: Software*
Mass Spectrometry/*standards
Proteins/*analysis
Proteomics/*standards
Databases, Protein ; Internet ; Mass Spectrometry/methods ; Proteomics/methods
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 5 5.

Tytuł :: A face in the crowd: recognizing peptides through database search.
Autorzy :: Eng JK; University of Washington, Department of Genome Sciences, Seattle, WA 98195, USA. />Searle BC
Clauser KR
Tabb DL; Pokaż więcej
Źródło :: Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2011 Nov; Vol. 10 (11), pp. R111.009522. Date of Electronic Publication: 2011 Aug 29.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Review
MeSH Terms :: Databases, Protein*
Search Engine*
Peptide Fragments/*chemistry
Algorithms ; Amino Acid Sequence ; Animals ; Humans ; Molecular Weight ; Protein Processing, Post-Translational ; Proteome/chemistry ; Tandem Mass Spectrometry/methods
: Czasopismo naukowe

Szczegóły

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