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    Podgląd okładki
    Tytuł :
    Generating high quality libraries for DIA MS with empirically corrected peptide predictions.
    Autorzy :
    Searle BC; Institute for Systems Biology, Seattle, WA, USA. .; Proteome Software, Inc., Portland, OR, USA. .
    Swearingen KE; Institute for Systems Biology, Seattle, WA, USA.
    Barnes CA; Novo Nordisk Research Center Seattle, Inc., Seattle, WA, USA.
    Schmidt T; Technical University of Munich, Freising, Germany.
    Gessulat S; Technical University of Munich, Freising, Germany.; SAP SE, Potsdam, Germany.
    Küster B; Technical University of Munich, Freising, Germany.; Bavarian Center for Biomolecular Mass Spectrometry, Freising, Germany.
    Wilhelm M; Technical University of Munich, Freising, Germany.
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    Źródło :
    Nature communications [Nat Commun] 2020 Mar 25; Vol. 11 (1), pp. 1548. Date of Electronic Publication: 2020 Mar 25.
    Typ publikacji :
    Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
    MeSH Terms :
    Chromatography, Liquid/*methods
    Peptides/*analysis
    Proteomics/*methods
    Tandem Mass Spectrometry/*methods
    Algorithms ; Databases, Protein ; HeLa Cells ; Humans ; Peptide Library ; Peptides/chemistry ; Proteome/analysis ; Proteome/chemistry ; Reproducibility of Results ; Workflow
    Czasopismo naukowe
    Szczegóły
    Podgląd okładki
    Tytuł :
    Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry.
    Autorzy :
    Searle BC; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Proteome Software, Portland, OR, USA.
    Pino LK; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
    Egertson JD; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
    Ting YS; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
    Lawrence RT; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
    MacLean BX; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
    Villén J; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
    MacCoss MJ; Department of Genome Sciences, University of Washington, Seattle, WA, USA. .
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    Źródło :
    Nature communications [Nat Commun] 2018 Dec 03; Vol. 9 (1), pp. 5128. Date of Electronic Publication: 2018 Dec 03.
    Typ publikacji :
    Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
    MeSH Terms :
    Chromatography, Liquid/*methods
    Peptides/*analysis
    Proteome/*analysis
    Proteomics/*methods
    Tandem Mass Spectrometry/*methods
    Algorithms ; Databases, Protein ; HeLa Cells ; Humans ; Reproducibility of Results ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/analysis
    Czasopismo naukowe
    Szczegóły
    Podgląd okładki
    Tytuł :
    An Efficient Approach to Evaluate Reporter Ion Behavior from MALDI-MS/MS Data for Quantification Studies Using Isobaric Tags.
    Autorzy :
    Cologna SM; Program on Developmental Endocrinology and Genetics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, DHHS , 31 Center Drive, Bethesda, Maryland 20892, United States.
    Crutchfield CA; Biomedical Mass Spectrometry Facility, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, DHHS , 31 Center Drive, Bethesda, Maryland 20892, United States.
    Searle BC; Proteome Software, Inc. , 1340 SW Bertha Boulevard, Portland, Oregon 97219, United States.
    Blank PS; Section on Membrane and Cellular Biophysics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, DHHS , 31 Center Drive, Bethesda, Maryland 20892, United States.
    Toth CL; Program on Developmental Endocrinology and Genetics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, DHHS , 31 Center Drive, Bethesda, Maryland 20892, United States.
    Ely AM; Program on Developmental Endocrinology and Genetics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, DHHS , 31 Center Drive, Bethesda, Maryland 20892, United States.
    Picache JA; Program on Developmental Endocrinology and Genetics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, DHHS , 31 Center Drive, Bethesda, Maryland 20892, United States.
    Backlund PS; Biomedical Mass Spectrometry Facility, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, DHHS , 31 Center Drive, Bethesda, Maryland 20892, United States.
    Wassif CA; Program on Developmental Endocrinology and Genetics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, DHHS , 31 Center Drive, Bethesda, Maryland 20892, United States.
    Porter FD; Program on Developmental Endocrinology and Genetics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, DHHS , 31 Center Drive, Bethesda, Maryland 20892, United States.
    Yergey AL; Biomedical Mass Spectrometry Facility, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, DHHS , 31 Center Drive, Bethesda, Maryland 20892, United States.
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    Źródło :
    Journal of proteome research [J Proteome Res] 2015 Oct 02; Vol. 14 (10), pp. 4169-78. Date of Electronic Publication: 2015 Sep 03.
    Typ publikacji :
    Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms :
    Complex Mixtures/*chemistry
    Peptides/*analysis
    Proteome/*isolation & purification
    Proteomics/*methods
    Staining and Labeling/*methods
    Hep G2 Cells ; Humans ; Ions/chemistry ; Proteolysis ; Proteomics/instrumentation ; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ; Tandem Mass Spectrometry ; Trypsin/chemistry
    Czasopismo naukowe
    Szczegóły
    Podgląd okładki
    Tytuł :
    Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments.
    Autorzy :
    Searle BC; From the ‡Department of Genome Sciences, University of Washington, Seattle, Washington 98195; §Proteome Software Inc., Portland, OR 97219.
    Egertson JD; From the ‡Department of Genome Sciences, University of Washington, Seattle, Washington 98195;
    Bollinger JG; From the ‡Department of Genome Sciences, University of Washington, Seattle, Washington 98195;
    Stergachis AB; From the ‡Department of Genome Sciences, University of Washington, Seattle, Washington 98195;
    MacCoss MJ; From the ‡Department of Genome Sciences, University of Washington, Seattle, Washington 98195; .
    Pokaż więcej
    Źródło :
    Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2015 Sep; Vol. 14 (9), pp. 2331-40. Date of Electronic Publication: 2015 Jun 22.
    Typ publikacji :
    Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms :
    Peptides/*chemistry
    Peptides/*metabolism
    Algorithms ; Humans ; Mass Spectrometry/methods ; Neural Networks, Computer ; Proteomics/methods ; Software
    Czasopismo naukowe
    Szczegóły
      Wyświetlanie 1-10 z 10

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