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Wyszukujesz frazę ""Sequence Alignment"" wg kryterium: Temat


Tytuł:
Gauging Dynamics-driven Allostery Using a New Computational Tool: A CAP Case Study.
Autorzy:
Kornev AP; Departmen of Pharmacology, University of California San Diego, La Jolla, CA 92093, USA. Electronic address: .
Weng JH; Departmen of Pharmacology, University of California San Diego, La Jolla, CA 92093, USA.
Maillard RA; Department of Chemistry, Georgetown University, Washington, DC 20007, USA.
Taylor SS; Departmen of Pharmacology, University of California San Diego, La Jolla, CA 92093, USA; Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA.
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Źródło:
Journal of molecular biology [J Mol Biol] 2024 Jan 15; Vol. 436 (2), pp. 168395. Date of Electronic Publication: 2023 Dec 13.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Allosteric Regulation*
Cyclic AMP Receptor Protein*/chemistry
Sequence Alignment*/methods
Entropy ; Molecular Dynamics Simulation ; Protein Binding ; Reproducibility of Results
Czasopismo naukowe
Tytuł:
Multiple sequence alignment-based RNA language model and its application to structural inference.
Autorzy:
Zhang Y; School of Electronic and Computer Engineering, Peking University, Shenzhen 518055, China.; AI for Science (AI4S)-Preferred Program, Peking University Shenzhen Graduate School, Shenzen 518055, China.
Lang M; Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518107, China.
Jiang J; Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518107, China.
Gao Z; Shanghai Artificial Intelligence Laboratory, Shanghai 200232, China.; Peng Cheng Laboratory, Shenzhen 518066, China.
Xu F; Peng Cheng Laboratory, Shenzhen 518066, China.
Litfin T; Institute for Glycomics, Griffith University, Parklands Dr, Southport, QLD 4215, Australia.
Chen K; Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518107, China.
Singh J; Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518107, China.
Huang X; Peng Cheng Laboratory, Shenzhen 518066, China.
Song G; Peng Cheng Laboratory, Shenzhen 518066, China.
Tian Y; Peng Cheng Laboratory, Shenzhen 518066, China.
Zhan J; Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518107, China.
Chen J; School of Electronic and Computer Engineering, Peking University, Shenzhen 518055, China.; Peng Cheng Laboratory, Shenzhen 518066, China.
Zhou Y; Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518107, China.; Institute for Glycomics, Griffith University, Parklands Dr, Southport, QLD 4215, Australia.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2024 Jan 11; Vol. 52 (1), pp. e3.
Typ publikacji:
Journal Article
MeSH Terms:
RNA*/chemistry
Sequence Alignment*
Machine Learning*
DNA/chemistry ; Proteins ; Solvents
Czasopismo naukowe
Tytuł:
Predicting multiple conformations via sequence clustering and AlphaFold2.
Autorzy:
Wayment-Steele HK; Department of Biochemistry, Brandeis University and Howard Hughes Medical Institute, Waltham, MA, USA.
Ojoawo A; Department of Biochemistry, Brandeis University and Howard Hughes Medical Institute, Waltham, MA, USA.
Otten R; Department of Biochemistry, Brandeis University and Howard Hughes Medical Institute, Waltham, MA, USA.; Treeline Biosciences, Watertown, MA, USA.
Apitz JM; Department of Biochemistry, Brandeis University and Howard Hughes Medical Institute, Waltham, MA, USA.
Pitsawong W; Department of Biochemistry, Brandeis University and Howard Hughes Medical Institute, Waltham, MA, USA.; Biomolecular Discovery, Relay Therapeutics, Cambridge, MA, USA.
Hömberger M; Department of Biochemistry, Brandeis University and Howard Hughes Medical Institute, Waltham, MA, USA.; Treeline Biosciences, Watertown, MA, USA.
Ovchinnikov S; Center for Systems Biology, Harvard University, Cambridge, MA, USA.
Colwell L; Google Research, Cambridge, MA, USA.; Cambridge University, Cambridge, UK.
Kern D; Department of Biochemistry, Brandeis University and Howard Hughes Medical Institute, Waltham, MA, USA. .
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Źródło:
Nature [Nature] 2024 Jan; Vol. 625 (7996), pp. 832-839. Date of Electronic Publication: 2023 Nov 13.
Typ publikacji:
Journal Article
MeSH Terms:
Cluster Analysis*
Protein Conformation*
Proteins*/chemistry
Proteins*/genetics
Proteins*/metabolism
Sequence Alignment*
Machine Learning*
Protein Folding*
Mutation ; Rhodobacter sphaeroides ; Bacterial Proteins/chemistry ; Bacterial Proteins/metabolism
Czasopismo naukowe
Tytuł:
Accurate proteome-wide missense variant effect prediction with AlphaMissense.
Autorzy:
Cheng J; Google DeepMind, London, UK.
Novati G; Google DeepMind, London, UK.
Pan J; Google DeepMind, London, UK.
Bycroft C; Google DeepMind, London, UK.
Žemgulytė A; Google DeepMind, London, UK.
Applebaum T; Google DeepMind, London, UK.
Pritzel A; Google DeepMind, London, UK.
Wong LH; Google DeepMind, London, UK.
Zielinski M; Google DeepMind, London, UK.
Sargeant T; Google DeepMind, London, UK.
Schneider RG; Google DeepMind, London, UK.
Senior AW; Google DeepMind, London, UK.
Jumper J; Google DeepMind, London, UK.
Hassabis D; Google DeepMind, London, UK.
Kohli P; Google DeepMind, London, UK.
Avsec Ž; Google DeepMind, London, UK.
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Źródło:
Science (New York, N.Y.) [Science] 2023 Sep 22; Vol. 381 (6664), pp. eadg7492. Date of Electronic Publication: 2023 Sep 22.
Typ publikacji:
Journal Article
MeSH Terms:
Amino Acid Substitution*/genetics
Disease*/genetics
Mutation, Missense*
Proteome*/genetics
Sequence Alignment*/methods
Humans ; Benchmarking ; Conserved Sequence ; Databases, Genetic ; Genome, Human ; Protein Conformation ; Machine Learning
Czasopismo naukowe
Tytuł:
DCAlign v1.0: aligning biological sequences using co-evolution models and informed priors.
Autorzy:
Muntoni AP; Italian Institute for Genomic Medicine, IRCCS Candiolo, I-10060 Candiolo (TO), Italy.; Politecnico di Torino, I-10129 Torino, Italy.
Pagnani A; Italian Institute for Genomic Medicine, IRCCS Candiolo, I-10060 Candiolo (TO), Italy.; Politecnico di Torino, I-10129 Torino, Italy.; INFN, Sezione di Torino, Torino, Via Pietro Giuria 1, I-10125 Torino, Italy.
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Źródło:
Bioinformatics (Oxford, England) [Bioinformatics] 2023 Sep 02; Vol. 39 (9).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Sequence Alignment*
Computational Biology
Czasopismo naukowe
Tytuł:
CovET: A covariation-evolutionary trace method that identifies protein structure-function modules.
Autorzy:
Konecki DM; Quantitative and Computational Biosciences Graduate Program, Baylor College of Medicine, Houston, Texas, USA.
Hamrick S; Chemical, Physical, and Structural Biology Graduate Program, Baylor College of Medicine, Houston, Texas, USA.
Wang C; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Agosto MA; Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas, USA.
Wensel TG; Quantitative and Computational Biosciences Graduate Program, Baylor College of Medicine, Houston, Texas, USA; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA; Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas, USA; Cancer and Cell Biology Graduate Program, Baylor College of Medicine, Houston, Texas, USA.
Lichtarge O; Quantitative and Computational Biosciences Graduate Program, Baylor College of Medicine, Houston, Texas, USA; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA; Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas, USA; Cancer and Cell Biology Graduate Program, Baylor College of Medicine, Houston, Texas, USA; Computational and Integrative Biomedical Research Center, Baylor College of Medicine, Houston, Texas, USA. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2023 Jul; Vol. 299 (7), pp. 104896. Date of Electronic Publication: 2023 Jun 07.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Evolution, Molecular*
Sequence Alignment*/methods
Binding Sites/genetics ; Phylogeny ; Receptors, G-Protein-Coupled/genetics
Czasopismo naukowe
Tytuł:
CircularSTAR3D: a stack-based RNA 3D structural alignment tool for circular matching.
Autorzy:
Chen X; Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA.
Zhang S; Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 May 22; Vol. 51 (9), pp. e53.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Nucleic Acid Conformation*
RNA*/genetics
RNA*/chemistry
Sequence Alignment*/methods
Sequence Analysis, RNA*/methods
Software*
Algorithms ; Base Pairing
Czasopismo naukowe
Tytuł:
FAS: assessing the similarity between proteins using multi-layered feature architectures.
Autorzy:
Dosch J; Applied Bioinformatics Group, Goethe University Frankfurt, Faculty of Biosciences, Institute of Cell Biology and Neuroscience, Frankfurt, 60438, Germany.
Bergmann H; Applied Bioinformatics Group, Goethe University Frankfurt, Faculty of Biosciences, Institute of Cell Biology and Neuroscience, Frankfurt, 60438, Germany.
Tran V; Applied Bioinformatics Group, Goethe University Frankfurt, Faculty of Biosciences, Institute of Cell Biology and Neuroscience, Frankfurt, 60438, Germany.
Ebersberger I; Applied Bioinformatics Group, Goethe University Frankfurt, Faculty of Biosciences, Institute of Cell Biology and Neuroscience, Frankfurt, 60438, Germany.; Senckenberg Biodiversity and Climate Research Centre (S-BIKF), Frankfurt, 60325, Germany.; LOEWE Centre for Translational Biodiversity Genomics (TBG), Frankfurt, 60325, Germany.
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Źródło:
Bioinformatics (Oxford, England) [Bioinformatics] 2023 May 04; Vol. 39 (5).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Amino Acid Sequence*
Proteins*/chemistry
Software*
Sequence Alignment*/methods
Humans ; Computational Biology/methods ; Saccharomyces cerevisiae Proteins/chemistry
Czasopismo naukowe
Tytuł:
Protein embedding based alignment.
Autorzy:
Iovino BG; Luddy School of Informatics, Computing and Engineering, Indiana University, 700 N. Woodlawn Avenue, Bloomington, IN, 47408, USA.
Ye Y; Luddy School of Informatics, Computing and Engineering, Indiana University, 700 N. Woodlawn Avenue, Bloomington, IN, 47408, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Feb 28; Vol. 25 (1), pp. 85. Date of Electronic Publication: 2024 Feb 28.
Typ publikacji:
Journal Article
MeSH Terms:
Proteins*/chemistry
Boronic Acids*
Amino Acid Sequence ; Sequence Alignment ; Algorithms
Czasopismo naukowe
Tytuł:
VF-Pred: Predicting virulence factor using sequence alignment percentage and ensemble learning models.
Autorzy:
Singh S; NUS-ISS, National University of Singapore, 119615, Singapore.
Le NQK; Professional Master Program in Artificial Intelligence in Medicine, College of Medicine, Taipei Medical University, Taipei, 110, Taiwan; AIBioMed Research Group, Taipei Medical University, Taipei, 110, Taiwan; Translational Imaging Research Center, Taipei Medical University Hospital, Taipei, 110, Taiwan. Electronic address: .
Wang C; NUS-ISS, National University of Singapore, 119615, Singapore.
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Źródło:
Computers in biology and medicine [Comput Biol Med] 2024 Jan; Vol. 168, pp. 107662. Date of Electronic Publication: 2023 Nov 03.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Virulence Factors*/genetics
Communicable Diseases*
Humans ; Sequence Alignment ; Algorithms ; Machine Learning
Czasopismo naukowe
Tytuł:
Enhancing coevolutionary signals in protein-protein interaction prediction through clade-wise alignment integration.
Autorzy:
Fang T; Department of Molecular Life Sciences, University of Zurich, 8057, Zurich, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland.
Szklarczyk D; Department of Molecular Life Sciences, University of Zurich, 8057, Zurich, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland.
Hachilif R; Department of Molecular Life Sciences, University of Zurich, 8057, Zurich, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland.
von Mering C; Department of Molecular Life Sciences, University of Zurich, 8057, Zurich, Switzerland. .; SIB Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland. .
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Źródło:
Scientific reports [Sci Rep] 2024 Mar 12; Vol. 14 (1), pp. 6009. Date of Electronic Publication: 2024 Mar 12.
Typ publikacji:
Journal Article
MeSH Terms:
Algorithms*
Proteins*/genetics
Sequence Alignment ; Biological Evolution ; Phylogeny ; Computational Biology/methods
Czasopismo naukowe
Tytuł:
Scalable neighbour search and alignment with uvaia.
Autorzy:
de Oliveira Martins L; Quadram Institute Bioscience, Norwich, United Kingdom.
Mather AE; Quadram Institute Bioscience, Norwich, United Kingdom.; University of East Anglia, Norwich, United Kingdom.
Page AJ; Quadram Institute Bioscience, Norwich, United Kingdom.
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Źródło:
PeerJ [PeerJ] 2024 Mar 06; Vol. 12, pp. e16890. Date of Electronic Publication: 2024 Mar 06 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Computers*
SARS-CoV-2*/genetics
Phylogeny ; Sequence Alignment
Czasopismo naukowe
Tytuł:
Characterization and functional analysis of SOCS9 from orange-spotted grouper (Epinephelus coioides) during virus infection.
Autorzy:
Chen J; College of Fisheries, Guangdong Ocean University, Guangdong Provincial Key Laboratory of Aquatic Animal Disease Control and Healthy Culture, Guangdong Key Laboratory of Control for Diseases of Aquatic Economic Animals, Zhanjiang, 524088, PR China.
Chen Z; College of Fisheries, Guangdong Ocean University, Guangdong Provincial Key Laboratory of Aquatic Animal Disease Control and Healthy Culture, Guangdong Key Laboratory of Control for Diseases of Aquatic Economic Animals, Zhanjiang, 524088, PR China.
Li Y; College of Fisheries, Guangdong Ocean University, Guangdong Provincial Key Laboratory of Aquatic Animal Disease Control and Healthy Culture, Guangdong Key Laboratory of Control for Diseases of Aquatic Economic Animals, Zhanjiang, 524088, PR China.
Wang B; College of Fisheries, Guangdong Ocean University, Guangdong Provincial Key Laboratory of Aquatic Animal Disease Control and Healthy Culture, Guangdong Key Laboratory of Control for Diseases of Aquatic Economic Animals, Zhanjiang, 524088, PR China.
Lu Y; College of Fisheries, Guangdong Ocean University, Guangdong Provincial Key Laboratory of Aquatic Animal Disease Control and Healthy Culture, Guangdong Key Laboratory of Control for Diseases of Aquatic Economic Animals, Zhanjiang, 524088, PR China.
Jian J; College of Fisheries, Guangdong Ocean University, Guangdong Provincial Key Laboratory of Aquatic Animal Disease Control and Healthy Culture, Guangdong Key Laboratory of Control for Diseases of Aquatic Economic Animals, Zhanjiang, 524088, PR China.
Tang J; College of Fisheries, Guangdong Ocean University, Guangdong Provincial Key Laboratory of Aquatic Animal Disease Control and Healthy Culture, Guangdong Key Laboratory of Control for Diseases of Aquatic Economic Animals, Zhanjiang, 524088, PR China.
Cai J; College of Fisheries, Guangdong Ocean University, Guangdong Provincial Key Laboratory of Aquatic Animal Disease Control and Healthy Culture, Guangdong Key Laboratory of Control for Diseases of Aquatic Economic Animals, Zhanjiang, 524088, PR China; Guangxi Key Laboratory of Aquatic Biotechnology and Modern Ecological Aquaculture, Guangxi Academy of Sciences, Nanning, 530007, PR China. Electronic address: .
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Źródło:
Fish & shellfish immunology [Fish Shellfish Immunol] 2024 Mar; Vol. 146, pp. 109424. Date of Electronic Publication: 2024 Feb 02.
Typ publikacji:
Journal Article
MeSH Terms:
Bass*
RNA Virus Infections*
Virus Diseases*
Fish Diseases*
Nodaviridae*/physiology
DNA Virus Infections*/veterinary
Animals ; Immunity, Innate/genetics ; Gene Expression Regulation ; Amino Acid Sequence ; Sequence Alignment ; Interferons/metabolism ; Fish Proteins/chemistry ; Mammals/metabolism
Czasopismo naukowe
Tytuł:
The identification of a serpin with immune defense role in oriental river prawn Macrobrachium nipponense.
Autorzy:
Jiang H; Engineering Lab of Henan Province for Aquatic Animal Disease Control, Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation, College of Fisheries, Henan Normal University, Xinxiang 453007, PR China. Electronic address: .
Li H; Engineering Lab of Henan Province for Aquatic Animal Disease Control, Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation, College of Fisheries, Henan Normal University, Xinxiang 453007, PR China.
Liu X; Engineering Lab of Henan Province for Aquatic Animal Disease Control, Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation, College of Fisheries, Henan Normal University, Xinxiang 453007, PR China.
Zhang S; Engineering Lab of Henan Province for Aquatic Animal Disease Control, Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation, College of Fisheries, Henan Normal University, Xinxiang 453007, PR China.
Li X; Engineering Lab of Henan Province for Aquatic Animal Disease Control, Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation, College of Fisheries, Henan Normal University, Xinxiang 453007, PR China.
Wang L; Engineering Lab of Henan Province for Aquatic Animal Disease Control, Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation, College of Fisheries, Henan Normal University, Xinxiang 453007, PR China.
Zhang M; Engineering Lab of Henan Province for Aquatic Animal Disease Control, Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation, College of Fisheries, Henan Normal University, Xinxiang 453007, PR China.
Yu M; Engineering Lab of Henan Province for Aquatic Animal Disease Control, Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation, College of Fisheries, Henan Normal University, Xinxiang 453007, PR China.
Li X; Engineering Lab of Henan Province for Aquatic Animal Disease Control, Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation, College of Fisheries, Henan Normal University, Xinxiang 453007, PR China.
Qiao Z; Engineering Lab of Henan Province for Aquatic Animal Disease Control, Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation, College of Fisheries, Henan Normal University, Xinxiang 453007, PR China.
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Źródło:
International journal of biological macromolecules [Int J Biol Macromol] 2024 Mar; Vol. 261 (Pt 1), pp. 129747. Date of Electronic Publication: 2024 Jan 26.
Typ publikacji:
Journal Article
MeSH Terms:
Serpins*/genetics
Serpins*/metabolism
Palaemonidae*
Animals ; Amino Acid Sequence ; Base Sequence ; Sequence Alignment ; Arthropod Proteins/metabolism ; Phylogeny
Czasopismo naukowe
Tytuł:
CNCA aligns small annotated genomes.
Autorzy:
Lorenzi JN; Université Paris Cité, Paris, France. .; CNRS, Institut Jacques Monod, 75013, Paris, France. .; SMILE Group, Center for Interdisciplinary Research in Biology (CIRB), Collège de France, 75006, Paris, France. .
Graner F; Université Paris Cité, Paris, France.; CNRS, Matière Et Systèmes Complexes, 75013, Paris, France.
Courtier-Orgogozo V; Université Paris Cité, Paris, France.; CNRS, Institut Jacques Monod, 75013, Paris, France.
Achaz G; SMILE Group, Center for Interdisciplinary Research in Biology (CIRB), Collège de France, 75006, Paris, France.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Feb 29; Vol. 25 (1), pp. 89. Date of Electronic Publication: 2024 Feb 29.
Typ publikacji:
Journal Article
MeSH Terms:
Genome*
Proteins*
Sequence Alignment ; Amino Acid Sequence ; Nucleotides
Czasopismo naukowe
Tytuł:
Modulation of a Loop Region in the Substrate Binding Pocket Affects the Degree of Polymerization of Bacillus subtilis Chitosanase Products.
Autorzy:
Gao W; Laboratory of Applied Microbiology, School of Pharmacy, School of Biological and Food Engineering, Changzhou University, Changzhou 213164, China.
Ding F; Laboratory of Applied Microbiology, School of Pharmacy, School of Biological and Food Engineering, Changzhou University, Changzhou 213164, China.
Wu J; Laboratory of Applied Microbiology, School of Pharmacy, School of Biological and Food Engineering, Changzhou University, Changzhou 213164, China.
Ma W; Laboratory of Applied Microbiology, School of Pharmacy, School of Biological and Food Engineering, Changzhou University, Changzhou 213164, China.
Wang C; Laboratory of Applied Microbiology, School of Pharmacy, School of Biological and Food Engineering, Changzhou University, Changzhou 213164, China.
Man Z; Laboratory of Applied Microbiology, School of Pharmacy, School of Biological and Food Engineering, Changzhou University, Changzhou 213164, China.; Advanced Catalysis and Green Manufacturing Collaborative Innovation Center, Changzhou University, Changzhou 213164, China.
Cai Z; Laboratory of Applied Microbiology, School of Pharmacy, School of Biological and Food Engineering, Changzhou University, Changzhou 213164, China.; Advanced Catalysis and Green Manufacturing Collaborative Innovation Center, Changzhou University, Changzhou 213164, China.
Guo J; Laboratory of Applied Microbiology, School of Pharmacy, School of Biological and Food Engineering, Changzhou University, Changzhou 213164, China.; Advanced Catalysis and Green Manufacturing Collaborative Innovation Center, Changzhou University, Changzhou 213164, China.
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Źródło:
Journal of agricultural and food chemistry [J Agric Food Chem] 2024 Feb 28; Vol. 72 (8), pp. 4358-4366. Date of Electronic Publication: 2024 Feb 13.
Typ publikacji:
Journal Article
MeSH Terms:
Bacillus subtilis*/genetics
Bacillus subtilis*/metabolism
Chitosan*
Polymerization ; Glycoside Hydrolases/chemistry ; Sequence Alignment
Czasopismo naukowe
Tytuł:
KINtaro: protein kinase-like database.
Autorzy:
Baranowski B; Laboratory of Plant Pathogenesis, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Krysińska M; Department of Biochemistry and Microbiology, Warsaw University of Life Sciences (SGGW), Warsaw, Poland.
Gradowski M; Department of Biochemistry and Microbiology, Warsaw University of Life Sciences (SGGW), Warsaw, Poland. marcin_.
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Źródło:
BMC research notes [BMC Res Notes] 2024 Feb 16; Vol. 17 (1), pp. 50. Date of Electronic Publication: 2024 Feb 16.
Typ publikacji:
Journal Article
MeSH Terms:
Protein Kinases*/genetics
Proteins*
Humans ; Phosphorylation ; Amino Acid Sequence ; Sequence Alignment ; Databases, Protein
Czasopismo naukowe
Tytuł:
Fasta2Structure: a user-friendly tool for converting multiple aligned FASTA files to STRUCTURE format.
Autorzy:
Bessa-Silva A; Laboratório de Evolução, Universidade Federal do Pará, Alameda Leandro Ribeiro, Aldeia, Bragança, Pará, Brazil. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Feb 15; Vol. 25 (1), pp. 73. Date of Electronic Publication: 2024 Feb 15.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
User-Computer Interface*
Sequence Alignment
Czasopismo naukowe
Tytuł:
De novo prediction of RNA 3D structures with deep generative models.
Autorzy:
Ramakers J; Department of Computer Science, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany.
Blum CF; Department of Computer Science, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany.
König S; Department of Computer Science, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany.
Harmeling S; Department of Computer Science, Technical University Dortmund, Dortmund, Germany.
Kollmann M; Department of Computer Science, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany.
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Źródło:
PloS one [PLoS One] 2024 Feb 15; Vol. 19 (2), pp. e0297105. Date of Electronic Publication: 2024 Feb 15 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
RNA*/chemistry
Retrospective Studies ; Sequence Alignment ; Base Sequence
Czasopismo naukowe

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