Temat: "Sequence Alignment" - OpacWWW

Skocz do pozycji: 1 1.

Tytuł :: Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation.
Autorzy :: Russo ET; SISSA, 34136, Trieste, Italy.
Laio A; SISSA, 34136, Trieste, Italy. .
Punta M; Centre for Evolution and Cancer, The Institute of Cancer Research, London, SM2 5NG, UK.; Center for Omics Sciences, IRCCS San Raffaele Hospital, 20132, Milan, Italy.; Pokaż więcej
Źródło :: BMC bioinformatics [BMC Bioinformatics] 2021 Mar 12; Vol. 22 (1), pp. 121. Date of Electronic Publication: 2021 Mar 12.
Typ publikacji :: Journal Article
MeSH Terms :: Proteins*/genetics
Sequence Alignment*
Amino Acid Sequence ; Cluster Analysis ; Databases, Protein ; Humans
: Czasopismo naukowe

Szczegóły Pełny tekst

Skocz do pozycji: 2 2.

Tytuł :: Multiple Sequence Alignment Computation Using the T-Coffee Regressive Algorithm Implementation.
Autorzy :: Garriga E; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.
Di Tommaso P; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.
Magis C; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.
Erb I; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.
Mansouri L; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.
Baltzis A; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.
Floden E; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.
Notredame C; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain. .; Universitat Pompeu Fabra (UPF), Barcelona, Spain. .; Pokaż więcej
Źródło :: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2021; Vol. 2231, pp. 89-97.
Typ publikacji :: Journal Article
MeSH Terms :: Software*
Computational Biology/*methods
Sequence Alignment/*methods
Algorithms ; Cluster Analysis ; Computational Biology/instrumentation ; Sequence Alignment/instrumentation
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 3 3.

Tytuł :: Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPI.
Autorzy :: González-Domínguez J; Computer Architecture Group, Universidade da Coruña, CITIC, A Coruña, Spain. .; Pokaż więcej
Źródło :: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2021; Vol. 2231, pp. 39-47.
Typ publikacji :: Journal Article
MeSH Terms :: Software*
Computational Biology/*methods
Sequence Alignment/*methods
Algorithms ; Computational Biology/instrumentation ; Computing Methodologies ; Sequence Alignment/instrumentation
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 4 4.

Tytuł :: An Insight into Oligopeptide Transporter 3 (OPT3) Family Proteins.
Autorzy :: Kurt F; Department of Plant Production and Technologies, Faculty of Applied Sciences, Mus Alparslan University, Mus, Turkey.; Pokaż więcej
Źródło :: Protein and peptide letters [Protein Pept Lett] 2021; Vol. 28 (1), pp. 43-54.
Typ publikacji :: Journal Article
MeSH Terms :: Sequence Alignment*
Sequence Analysis, DNA*
Membrane Transport Proteins/*genetics
Plant Proteins/*genetics
Plants/*genetics
Membrane Transport Proteins/metabolism ; Plant Proteins/metabolism ; Plants/metabolism
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 5 5.

Tytuł :: Mustguseal and Sister Web-Methods: A Practical Guide to Bioinformatic Analysis of Protein Superfamilies.
Autorzy :: Suplatov D; Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Moscow, Russia. .
Sharapova Y; Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Moscow, Russia.; Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia.
Švedas V; Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Moscow, Russia.; Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia.; Pokaż więcej
Źródło :: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2021; Vol. 2231, pp. 179-200.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Software*
Computational Biology/*methods
Proteins/*chemistry
Sequence Alignment/*methods
Algorithms ; Amino Acid Sequence ; Computational Biology/instrumentation ; Disulfides/chemistry ; Internet ; Ligands ; Protein Structure, Tertiary ; Sequence Alignment/instrumentation
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 6 6.

Tytuł :: RNA Coding Potential Prediction Using Alignment-Free Logistic Regression Model.
Autorzy :: Li Y; Division of Biomedical Statistics and Informatics, Mayo Clinic College of Medicine, Rochester, MN, USA.
Wang L; Division of Biomedical Statistics and Informatics, Mayo Clinic College of Medicine, Rochester, MN, USA. .; Department of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine, Rochester, MN, USA. .; Pokaż więcej
Źródło :: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2021; Vol. 2254, pp. 27-39.
Typ publikacji :: Journal Article
MeSH Terms :: Sequence Alignment*
Computational Biology/*methods
Open Reading Frames/*genetics
RNA/*genetics
Genome ; Internet ; Logistic Models ; Probability ; Software
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 7 7.

Tytuł :: Arioc: High-concurrency short-read alignment on multiple GPUs.
Autorzy :: Wilton R; Department of Physics and Astronomy, Johns Hopkins University, Baltimore, Maryland, United States of America.
Szalay AS; Department of Physics and Astronomy, Johns Hopkins University, Baltimore, Maryland, United States of America.; Department of Computer Science, Johns Hopkins University, Baltimore, Maryland, United States of America.; Pokaż więcej
Źródło :: PLoS computational biology [PLoS Comput Biol] 2020 Nov 09; Vol. 16 (11), pp. e1008383. Date of Electronic Publication: 2020 Nov 09 (Print Publication: 2020).
Typ publikacji :: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :: Software*
Sequence Alignment/*methods
Algorithms ; Base Sequence ; Computational Biology ; Computer Graphics ; Computers ; Databases, Nucleic Acid ; Humans ; Information Storage and Retrieval ; Sequence Alignment/statistics & numerical data ; Sequence Analysis, DNA ; Whole Genome Sequencing
: Czasopismo naukowe

Szczegóły Pełny tekst Pełny tekst

Skocz do pozycji: 8 8.

Tytuł :: Progressive Cactus is a multiple-genome aligner for the thousand-genome era.
Autorzy :: Armstrong J; UC Santa Cruz Genomics Institute, UC Santa Cruz, Santa Cruz, CA, USA.
Hickey G; UC Santa Cruz Genomics Institute, UC Santa Cruz, Santa Cruz, CA, USA.
Diekhans M; UC Santa Cruz Genomics Institute, UC Santa Cruz, Santa Cruz, CA, USA.
Fiddes IT; UC Santa Cruz Genomics Institute, UC Santa Cruz, Santa Cruz, CA, USA.
Novak AM; UC Santa Cruz Genomics Institute, UC Santa Cruz, Santa Cruz, CA, USA.
Deran A; UC Santa Cruz Genomics Institute, UC Santa Cruz, Santa Cruz, CA, USA.
Fang Q; BGI-Shenzhen, Beishan Industrial Zone, Shenzhen, China.; Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Xie D; BGI-Shenzhen, Beishan Industrial Zone, Shenzhen, China.; BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China.
Feng S; BGI-Shenzhen, Beishan Industrial Zone, Shenzhen, China.; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Stiller J; Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Genereux D; Broad Institute of Harvard and Massachusetts Institute of Technology (MIT), Cambridge, MA, USA.
Johnson J; Broad Institute of Harvard and Massachusetts Institute of Technology (MIT), Cambridge, MA, USA.
Marinescu VD; Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Alföldi J; Broad Institute of Harvard and Massachusetts Institute of Technology (MIT), Cambridge, MA, USA.
Harris RS; Department of Biology, The Pennsylvania State University, University Park, PA, USA.
Lindblad-Toh K; Broad Institute of Harvard and Massachusetts Institute of Technology (MIT), Cambridge, MA, USA.; Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Haussler D; UC Santa Cruz Genomics Institute, UC Santa Cruz, Santa Cruz, CA, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA.
Karlsson E; Broad Institute of Harvard and Massachusetts Institute of Technology (MIT), Cambridge, MA, USA.; Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.; Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.
Jarvis ED; Howard Hughes Medical Institute, Chevy Chase, MD, USA.; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA.
Zhang G; Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark. .; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China. .; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, China. .; China National GeneBank, BGI-Shenzhen, Shenzhen, China. .
Paten B; UC Santa Cruz Genomics Institute, UC Santa Cruz, Santa Cruz, CA, USA. .; Pokaż więcej
Źródło :: Nature [Nature] 2020 Nov; Vol. 587 (7833), pp. 246-251. Date of Electronic Publication: 2020 Nov 11.
Typ publikacji :: Comparative Study; Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :: Software*/standards
Genome/*genetics
Genomics/*methods
Sequence Alignment/*methods
Vertebrates/*genetics
Amnion ; Animals ; Computer Simulation ; Genomics/standards ; Haplotypes ; Humans ; Quality Control ; Sequence Alignment/standards
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 9 9.

Tytuł :: Substitution scoring matrices for proteins - An overview.
Autorzy :: Trivedi R; Laboratory of Computational Biology, Centre for DNA Fingerprinting and Diagnostics, Uppal, Hyderabad, Telangana, India.; Graduate School, Manipal Academy of Higher Education, Manipal, Karnataka, India.
Nagarajaram HA; Laboratory of Computational Biology, Department of Systems and Computational Biology, School of Life Sciences, University of Hyderabad, Hyderabad, Telangana, India.; Centre for Modelling, Simulation and Design, University of Hyderabad, Hyderabad, Telangana, India.; Pokaż więcej
Źródło :: Protein science : a publication of the Protein Society [Protein Sci] 2020 Nov; Vol. 29 (11), pp. 2150-2163. Date of Electronic Publication: 2020 Oct 12.
Typ publikacji :: Journal Article; Review
MeSH Terms :: Algorithms*
Databases, Protein*
Evolution, Molecular*
Membrane Proteins*
Sequence Alignment*
Sequence Analysis, Protein*
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 10 10.

Tytuł :: The ranging of amino acids substitution matrices of various types in accordance with the alignment accuracy criterion.
Autorzy :: Polyanovsky V; Engelhardt Institute of Molecular Biology of Russian Academy of Sciences, Vavilova 32, 119991, Moscow, Russia. .
Lifanov A; Engelhardt Institute of Molecular Biology of Russian Academy of Sciences, Vavilova 32, 119991, Moscow, Russia.
Esipova N; Engelhardt Institute of Molecular Biology of Russian Academy of Sciences, Vavilova 32, 119991, Moscow, Russia.
Tumanyan V; Engelhardt Institute of Molecular Biology of Russian Academy of Sciences, Vavilova 32, 119991, Moscow, Russia. .; Pokaż więcej
Źródło :: BMC bioinformatics [BMC Bioinformatics] 2020 Sep 14; Vol. 21 (Suppl 11), pp. 294. Date of Electronic Publication: 2020 Sep 14.
Typ publikacji :: Comparative Study; Journal Article
MeSH Terms :: Amino Acid Substitution*
Sequence Alignment*
Software*
Computational Biology/*methods
Sequence Analysis, Protein/*methods
Amino Acid Sequence ; Evolution, Molecular ; Proteins/chemistry ; Proteins/metabolism
: Czasopismo naukowe

Szczegóły Pełny tekst Pełny tekst

Skocz do pozycji: 11 11.

Tytuł :: smsMap: mapping single molecule sequencing reads by locating the alignment starting positions.
Autorzy :: Wei ZG; Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an, 710072, China.; Institute of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China.
Zhang SW; Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an, 710072, China. .
Liu F; Institute of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China.; Pokaż więcej
Źródło :: BMC bioinformatics [BMC Bioinformatics] 2020 Aug 04; Vol. 21 (1), pp. 341. Date of Electronic Publication: 2020 Aug 04.
Typ publikacji :: Journal Article
MeSH Terms :: Sequence Alignment*
Software*
Sequence Analysis, DNA/*methods
Algorithms ; Computer Simulation ; Databases, Genetic ; Escherichia coli/genetics ; Humans ; Time Factors
: Czasopismo naukowe

Szczegóły Pełny tekst Pełny tekst

Skocz do pozycji: 12 12.

Tytuł :: RNAconTest: comparing tools for noncoding RNA multiple sequence alignment based on structural consistency.
Autorzy :: Wright ES; Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, Pennsylvania 15219, USA.; Pokaż więcej
Źródło :: RNA (New York, N.Y.) [RNA] 2020 May; Vol. 26 (5), pp. 531-540. Date of Electronic Publication: 2020 Jan 31.
Typ publikacji :: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :: Sequence Alignment*
Sequence Analysis, RNA*
Software*
RNA, Untranslated/*genetics
Algorithms ; Humans ; Nucleic Acid Conformation ; RNA, Untranslated/ultrastructure
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 13 13.

Tytuł :: Thousands of missing variants in the UK Biobank are recoverable by genome realignment.
Autorzy :: Jia T; Department of Medicine, University of California San Diego, La Jolla, California.
Munson B; Department of Medicine, University of California San Diego, La Jolla, California.
Lango Allen H; Medical Research Council Epidemiology Unit, University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, UK.
Ideker T; Department of Medicine, University of California San Diego, La Jolla, California.
Majithia AR; Department of Medicine, University of California San Diego, La Jolla, California.; Pokaż więcej
Źródło :: Annals of human genetics [Ann Hum Genet] 2020 May; Vol. 84 (3), pp. 214-220. Date of Electronic Publication: 2020 Mar 31.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :: Biological Specimen Banks*
Genome, Human*
Sequence Alignment*
Genomics/*methods
Datasets as Topic ; Exome ; Genetic Variation ; Genetics, Population ; Humans ; United Kingdom
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 14 14.

Tytuł :: SPAligner: alignment of long diverged molecular sequences to assembly graphs.
Autorzy :: Dvorkina T; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia. .
Antipov D; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia.
Korobeynikov A; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia.; Department of Statistical Modelling, St. Petersburg State University, St. Petersburg, Russia.
Nurk S; Genome Informatics Section, NHGRI, National Institutes of Health, Bethesda MD, USA.; Pokaż więcej
Źródło :: BMC bioinformatics [BMC Bioinformatics] 2020 Jul 24; Vol. 21 (Suppl 12), pp. 306. Date of Electronic Publication: 2020 Jul 24.
Typ publikacji :: Journal Article
MeSH Terms :: Algorithms*
Genetic Variation*
Sequence Alignment*
Base Sequence ; Haplotypes/genetics ; Humans ; Software ; Statistics as Topic ; beta-Lactamases/chemistry
: Czasopismo naukowe

Szczegóły Pełny tekst Pełny tekst

Skocz do pozycji: 15 15.

Tytuł :: PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST.
Autorzy :: Soto C; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.; Department of Pediatrics, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Finn JA; Department of Pathology, Microbiology, and Immunology, Vanderbilt University, Nashville, TN, 37232, USA.
Willis JR; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Day SB; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Sinkovits RS; San Diego Supercomputer Center, University of California, San Diego, La Jolla, CA, 92093, USA.
Jones T; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Schmitz S; Department of Chemistry, Vanderbilt University, Nashville, TN, 37212, USA.
Meiler J; Department of Chemistry, Vanderbilt University, Nashville, TN, 37212, USA.
Branchizio A; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Crowe JE Jr; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, TN, 37232, USA. .; Department of Pediatrics, Vanderbilt University Medical Center, Nashville, TN, 37232, USA. .; Department of Pathology, Microbiology, and Immunology, Vanderbilt University, Nashville, TN, 37232, USA. .; Pokaż więcej
Źródło :: BMC bioinformatics [BMC Bioinformatics] 2020 Jul 16; Vol. 21 (1), pp. 314. Date of Electronic Publication: 2020 Jul 16.
Typ publikacji :: Journal Article
MeSH Terms :: Sequence Alignment*
Software*
Immunoglobulins/*genetics
Receptors, Antigen, T-Cell/*genetics
Base Sequence ; Humans ; Sequence Analysis, DNA ; Time Factors ; User-Computer Interface
: Czasopismo naukowe

Szczegóły Pełny tekst Pełny tekst

Skocz do pozycji: 16 16.

Tytuł :: Zebra2: advanced and easy-to-use web-server for bioinformatic analysis of subfamily-specific and conserved positions in diverse protein superfamilies.
Autorzy :: Suplatov D; Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology and Faculty of Bioengineering and Bioinformatics, Lenin Hills 1-73, Moscow 119234, Russia.
Sharapova Y; Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology and Faculty of Bioengineering and Bioinformatics, Lenin Hills 1-73, Moscow 119234, Russia.
Geraseva E; Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology and Faculty of Bioengineering and Bioinformatics, Lenin Hills 1-73, Moscow 119234, Russia.
Švedas V; Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology and Faculty of Bioengineering and Bioinformatics, Lenin Hills 1-73, Moscow 119234, Russia.; Pokaż więcej
Źródło :: Nucleic acids research [Nucleic Acids Res] 2020 Jul 02; Vol. 48 (W1), pp. W65-W71.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Sequence Alignment*
Software*
Sequence Analysis, Protein/*methods
Algorithms ; Amino Acid Sequence ; Computational Biology/methods ; Conserved Sequence ; Internet ; Protein Conformation ; Proteins/chemistry ; Proteins/classification ; Sequence Homology, Amino Acid
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 17 17.

Tytuł :: Investigating Human Mitochondrial Genomes in Single Cells.
Autorzy :: Diroma MA; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies (IBIOM), National Research Council, Via Giovanni Amendola 118, 70126 Bari, Italy.
Varvara AS; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari 'A. Moro', Via Orabona 4, 70125 Bari, Italy.
Attimonelli M; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari 'A. Moro', Via Orabona 4, 70125 Bari, Italy.
Pesole G; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies (IBIOM), National Research Council, Via Giovanni Amendola 118, 70126 Bari, Italy.; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari 'A. Moro', Via Orabona 4, 70125 Bari, Italy.
Picardi E; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies (IBIOM), National Research Council, Via Giovanni Amendola 118, 70126 Bari, Italy.; Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari 'A. Moro', Via Orabona 4, 70125 Bari, Italy.; Pokaż więcej
Źródło :: Genes [Genes (Basel)] 2020 May 11; Vol. 11 (5). Date of Electronic Publication: 2020 May 11.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Genome, Mitochondrial*
Sequence Alignment*
Software*
DNA, Mitochondrial/*genetics
Single-Cell Analysis/*methods
Cell Line, Tumor ; Computational Biology ; Databases, Genetic ; Datasets as Topic ; HT29 Cells ; High-Throughput Nucleotide Sequencing/methods ; Human Umbilical Vein Endothelial Cells ; Humans ; Leukemia, Erythroblastic, Acute/pathology
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 18 18.

Tytuł :: Multithreaded variant calling in elPrep 5.
Autorzy :: Herzeel, Charlotte (AUTHOR)
Costanza, Pascal (AUTHOR)
Decap, Dries (AUTHOR)
Fostier, Jan (AUTHOR)
Wuyts, Roel (AUTHOR)
Verachtert, Wilfried (AUTHOR); Pokaż więcej
Źródło :: PLoS ONE. 2/4/2021, Vol. 16 Issue 2, p1-13. 13p.
: Czasopismo naukowe

Szczegóły Pełny tekst Pełny tekst

Skocz do pozycji: 19 19.

Tytuł :: Whole genome analysis of more than 10 000 SARS-CoV-2 virus unveils global genetic diversity and target region of NSP6.
Autorzy :: Saha I; Department of Computer Science and Engineering, National Institute of Technical Teachers' Training and Research, Kolkata, West Bengal, India.
Ghosh N; Department of Computer Science and Information Technology, Institute of Technical Education and Research, Siksha 'O' Anusandhan (Deemed to be University), Bhubaneswar, Odisha, India.
Pradhan A; Department of Computer Science and Engineering, Techno India University, West Bengal, India.
Sharma N; Department of Electronics and Communication Engineering, Jaypee Institute of Information Technology, Noida, Uttar Pradesh, India.
Maity D; Department of Electronics and Communication Engineering, MCKV Institute of Engineering, Howrah, West Bengal, India.
Mitra K; Department of Community Medicine, Burdwan Medical College, Barddhaman, West Bengal, India.; Pokaż więcej
Źródło :: Briefings in bioinformatics [Brief Bioinform] 2021 Mar 22; Vol. 22 (2), pp. 1106-1121.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Genome, Viral*
Coronavirus Nucleocapsid Proteins/*metabolism
SARS-CoV-2/*genetics
Coronavirus Nucleocapsid Proteins/genetics ; Humans ; India ; Mutation ; Open Reading Frames ; Polymorphism, Single Nucleotide ; Sequence Alignment ; Whole Genome Sequencing
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 20 20.

Tytuł :: Topological Analysis for Sequence Variability: Case Study on more than 2K SARS-CoV-2 sequences of COVID-19 infected 54 countries in comparison with SARS-CoV-1 and MERS-CoV.
Autorzy :: Sarkar JP; Larsen & Toubro Infotech Ltd., Pune, Maharashtra, India; Department of Computer Science and Engineering, Jadavpur University, Kolkata, West Bengal, India.
Saha I; Department of Computer Science and Engineering, National Institute of Technical Teachers' Training & Research, Kolkata, West Bengal, India. Electronic address: .
Seal A; Cognizant Technology Solutions, Kolkata, West Bengal, India.
Maity D; Department of Electronics and Communication Engineering, MCKV Institute of Engineering, Howrah, West Bengal, India.
Maulik U; Department of Computer Science and Engineering, Jadavpur University, Kolkata, West Bengal, India.; Pokaż więcej
Źródło :: Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [Infect Genet Evol] 2021 Mar; Vol. 88, pp. 104708. Date of Electronic Publication: 2021 Jan 06.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :: Genetic Variation*
Genome, Viral*
Pandemics*
COVID-19/*epidemiology
Coronavirus Infections/*epidemiology
SARS-CoV-2/*genetics
Severe Acute Respiratory Syndrome/*epidemiology
Africa/epidemiology ; Americas/epidemiology ; Asia/epidemiology ; Australia/epidemiology ; Base Sequence ; COVID-19/transmission ; COVID-19/virology ; Computational Biology/methods ; Coronavirus Infections/transmission ; Coronavirus Infections/virology ; Europe/epidemiology ; Host-Pathogen Interactions/genetics ; Humans ; Middle East Respiratory Syndrome Coronavirus/genetics ; Middle East Respiratory Syndrome Coronavirus/pathogenicity ; SARS Virus/genetics ; SARS Virus/pathogenicity ; SARS-CoV-2/pathogenicity ; Sequence Alignment ; Severe Acute Respiratory Syndrome/transmission ; Severe Acute Respiratory Syndrome/virology
: Czasopismo naukowe

Szczegóły

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