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Wyszukujesz frazę ""Sequence Analysis, DNA"" wg kryterium: Temat


Tytuł:
Machine Learning Methods for Exploring Sequence Determinants of 3D Genome Organization.
Autorzy:
Yang M; Computational Biology Department, School of Computer Science, Carnegie Mellon University, United States. Electronic address: https://twitter.com/muyu_wendy_yang.
Ma J; Computational Biology Department, School of Computer Science, Carnegie Mellon University, United States. Electronic address: .
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Źródło:
Journal of molecular biology [J Mol Biol] 2022 Aug 15; Vol. 434 (15), pp. 167666. Date of Electronic Publication: 2022 Jun 02.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Genome*/genetics
Imaging, Three-Dimensional*
Machine Learning*
Sequence Analysis, DNA*/methods
Cell Nucleus ; Chromatin ; Chromosome Mapping ; Chromosomes/genetics
Czasopismo naukowe
Tytuł:
Proof of concept for multiplex amplicon sequencing for mutation identification using the MinION nanopore sequencer.
Autorzy:
Whitford W; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand. .; Centre for Brain Research, The University of Auckland, Auckland, New Zealand. .
Hawkins V; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.; Centre for Brain Research, The University of Auckland, Auckland, New Zealand.
Moodley KS; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.; Centre for Brain Research, The University of Auckland, Auckland, New Zealand.
Grant MJ; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.; Centre for Brain Research, The University of Auckland, Auckland, New Zealand.
Lehnert K; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.; Centre for Brain Research, The University of Auckland, Auckland, New Zealand.
Snell RG; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.; Centre for Brain Research, The University of Auckland, Auckland, New Zealand.
Jacobsen JC; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.; Centre for Brain Research, The University of Auckland, Auckland, New Zealand.
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Źródło:
Scientific reports [Sci Rep] 2022 May 20; Vol. 12 (1), pp. 8572. Date of Electronic Publication: 2022 May 20.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Nanopore Sequencing*/methods
Sequence Analysis, DNA*/methods
Genomics ; High-Throughput Nucleotide Sequencing/methods ; Humans ; Mutation
Czasopismo naukowe
Tytuł:
Machine learning sequence prioritization for cell type-specific enhancer design.
Autorzy:
Lawler AJ; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, United States.; Biological Sciences Department, Mellon College of Science, Carnegie Mellon University, Pittsburgh, United States.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, United States.
Ramamurthy E; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, United States.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, United States.
Brown AR; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, United States.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, United States.
Shin N; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, United States.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, United States.
Kim Y; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, United States.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, United States.
Toong N; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, United States.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, United States.
Kaplow IM; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, United States.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, United States.
Wirthlin M; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, United States.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, United States.
Zhang X; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, United States.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, United States.
Phan BN; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, United States.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, United States.; Medical Scientist Training Program, University of Pittsburgh, Pittsburgh, United States.
Fox GA; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, United States.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, United States.
Wade K; Department of Psychiatry, Translational Neuroscience Program, University of Pittsburgh, Pittsburgh, United States.
He J; Department of Neurobiology, University of Pittsburgh, Pittsburgh, United States.; Systems Neuroscience Center, Brain Institute, Center for Neuroscience, Center for the Neural Basis of Cognition, Pittsburgh, United States.
Ozturk BE; Department of Ophthalmology, University of Pittsburgh, Pittsburgh, United States.
Byrne LC; Department of Neurobiology, University of Pittsburgh, Pittsburgh, United States.; Department of Ophthalmology, University of Pittsburgh, Pittsburgh, United States.; Division of Experimental Retinal Therapies, Department of Clinical Sciences & Advanced Medicine, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, United States.; Department of Bioengineering, University of Pittsburgh, Pittsburgh, United States.
Stauffer WR; Department of Neurobiology, University of Pittsburgh, Pittsburgh, United States.
Fish KN; Department of Psychiatry, Translational Neuroscience Program, University of Pittsburgh, Pittsburgh, United States.
Pfenning AR; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, United States.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, United States.
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Źródło:
ELife [Elife] 2022 May 16; Vol. 11. Date of Electronic Publication: 2022 May 16.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Enhancer Elements, Genetic*/genetics
Machine Learning*
Neurons*/metabolism
Sequence Analysis, DNA*/methods
Animals ; Cerebral Cortex/metabolism ; Computational Biology/methods ; Globus Pallidus ; Mice ; Parvalbumins/metabolism
Czasopismo naukowe
Tytuł:
Advanced sequencing approaches detected insertions of viral and human origin in the viral genome of chronic hepatitis E virus patients.
Autorzy:
Papp CP; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.; Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin, Berlin Institute of Health, German Centre for Infection Research, Berlin, Germany.
Biedermann P; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.; Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin, Berlin Institute of Health, German Centre for Infection Research, Berlin, Germany.
Harms D; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.
Wang B; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.; College of Veterinary Medicine, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.
Kebelmann M; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.; Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin, Berlin Institute of Health, German Centre for Infection Research, Berlin, Germany.
Choi M; Department of Nephrology and Intensive Medical Care, Charité Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität Zu Berlin, Berlin, Germany.
Helmuth J; Charité-Vivantes GmbH, Labor Berlin, Berlin, Germany.
Corman VM; Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin, Berlin Institute of Health, German Centre for Infection Research, Berlin, Germany.
Thürmer A; Genome Sequencing, Methodology and Research Infrastructure, Robert Koch Institute, Berlin, Germany.
Altmann B; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.
Klink P; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.
Hofmann J; Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin, Berlin Institute of Health, German Centre for Infection Research, Berlin, Germany.; Charité-Vivantes GmbH, Labor Berlin, Berlin, Germany.
Bock CT; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany. .; Institute of Tropical Medicine, University of Tübingen, Tubingen, Germany. .
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Źródło:
Scientific reports [Sci Rep] 2022 Feb 02; Vol. 12 (1), pp. 1720. Date of Electronic Publication: 2022 Feb 02.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome, Viral*
Mutagenesis, Insertional*
Sequence Analysis, DNA*
DNA, Viral/*genetics
Hepatitis E/*virology
Hepatitis E virus/*genetics
Hepatitis, Chronic/*virology
Hepatitis E/diagnosis ; Hepatitis E/genetics ; Hepatitis, Chronic/diagnosis ; Hepatitis, Chronic/genetics ; High-Throughput Nucleotide Sequencing ; Humans ; Polymerase Chain Reaction ; Polymorphism, Single Nucleotide ; RNA-Directed DNA Polymerase/genetics ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł:
Development of a high-resolution typing method for SLA-3, swine MHC class I antigen 3.
Autorzy:
Youk S; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
Le MT; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
Kang M; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
Ahn B; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
Choi M; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
Kim K; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.; Livestock Support Department, National Agricultural Cooperative Federation Agribusiness Group, Seoul, 04516, Korea.
Kim TH; Animal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, 55365, Korea.
Kim JH; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
Ho CS; Gift of Hope Organ and Tissue Donor Network, 425 Spring Lake Drive, Itasca, IL, 60143, USA.
Park C; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
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Źródło:
Animal genetics [Anim Genet] 2022 Feb; Vol. 53 (1), pp. 166-170. Date of Electronic Publication: 2021 Dec 15.
Typ publikacji:
Journal Article
MeSH Terms:
Genotyping Techniques/*veterinary
Histocompatibility Antigens Class I/*genetics
Sequence Analysis, DNA/*veterinary
Sus scrofa/*genetics
Animals ; Sequence Analysis, DNA/methods
Czasopismo naukowe
Tytuł:
Insights into opium poppy (Papaver spp.) genetic diversity from genotyping-by-sequencing analysis.
Autorzy:
Hong UVT; La Trobe Institute for Agriculture and Food, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia.; Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia.
Tamiru-Oli M; La Trobe Institute for Agriculture and Food, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia. .; Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia. .
Hurgobin B; La Trobe Institute for Agriculture and Food, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia.; Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia.
Okey CR; Palla Pharma Ltd, Docklands, VIC, 3008, Australia.
Abreu AR; Palla Pharma Ltd, Docklands, VIC, 3008, Australia.
Lewsey MG; La Trobe Institute for Agriculture and Food, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia. .; Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia. .
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Źródło:
Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 111. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genes, Plant*
Genetic Variation*
Genome, Plant*
Genotyping Techniques*
Polymorphism, Single Nucleotide*
Sequence Analysis, DNA*
DNA, Plant/*genetics
Papaver/*genetics
Seeds/*genetics
Alkaloids/metabolism ; Genotype ; Papaver/growth & development ; Papaver/metabolism ; Phenotype ; Phylogeny ; Seeds/growth & development ; Seeds/metabolism
Czasopismo naukowe
Tytuł:
Interpretable Autoencoders Trained on Single Cell Sequencing Data Can Transfer Directly to Data from Unseen Tissues.
Autorzy:
Walbech JS; Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, Blegdamsvej 9, 2100 Copenhagen, Denmark.; Center for Surgical Science, Zealand University Hospital, Lykkebækvej 1, 4600 Koege, Denmark.
Kinalis S; Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, Blegdamsvej 9, 2100 Copenhagen, Denmark.
Winther O; Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, Blegdamsvej 9, 2100 Copenhagen, Denmark.
Nielsen FC; Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, Blegdamsvej 9, 2100 Copenhagen, Denmark.
Bagger FO; Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, Blegdamsvej 9, 2100 Copenhagen, Denmark.
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Źródło:
Cells [Cells] 2021 Dec 28; Vol. 11 (1). Date of Electronic Publication: 2021 Dec 28.
Typ publikacji:
Journal Article
MeSH Terms:
Algorithms*
Organ Specificity*
Sequence Analysis, DNA*
Single-Cell Analysis*
Databases as Topic ; Genomics ; Humans ; Lung/pathology ; Models, Biological
Czasopismo naukowe
Tytuł:
ddPCR allows 16S rRNA gene amplicon sequencing of very small DNA amounts from low-biomass samples.
Autorzy:
Abellan-Schneyder I; Core Facility Microbiome, ZIEL - Institute for Food & Health, Technische Universität München, Freising, Germany.
Schusser AJ; Core Facility Microbiome, ZIEL - Institute for Food & Health, Technische Universität München, Freising, Germany.
Neuhaus K; Core Facility Microbiome, ZIEL - Institute for Food & Health, Technische Universität München, Freising, Germany. .
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Źródło:
BMC microbiology [BMC Microbiol] 2021 Dec 18; Vol. 21 (1), pp. 349. Date of Electronic Publication: 2021 Dec 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Biomass*
Polymerase Chain Reaction/*methods
RNA, Ribosomal, 16S/*genetics
Sequence Analysis, DNA/*methods
Bacteria/classification ; Bacteria/genetics ; Bacteria/isolation & purification ; Bias ; DNA, Bacterial/analysis ; DNA, Bacterial/genetics ; Feces/microbiology ; High-Throughput Nucleotide Sequencing/methods ; High-Throughput Nucleotide Sequencing/standards ; Humans ; Limit of Detection ; Microbiota/genetics ; Polymerase Chain Reaction/standards ; Reproducibility of Results ; Sequence Analysis, DNA/standards ; Water Microbiology
Czasopismo naukowe
Tytuł:
Prediction of SARS-CoV-2 Variant Lineages Using the S1-Encoding Region Sequence Obtained by PacBio Single-Molecule Real-Time Sequencing.
Autorzy:
Lhomme S; Infinity, Université Toulouse, CNRS, INSERM, UPS, 31300 Toulouse, France.; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
Latour J; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
Jeanne N; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
Trémeaux P; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
Ranger N; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
Migueres M; Infinity, Université Toulouse, CNRS, INSERM, UPS, 31300 Toulouse, France.; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
Salin G; INRAE, US 1426, GeT-PlaGe, Genotoul, 31326 Castanet-Tolosan, France.
Donnadieu C; INRAE, US 1426, GeT-PlaGe, Genotoul, 31326 Castanet-Tolosan, France.
Izopet J; Infinity, Université Toulouse, CNRS, INSERM, UPS, 31300 Toulouse, France.; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
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Źródło:
Viruses [Viruses] 2021 Dec 18; Vol. 13 (12). Date of Electronic Publication: 2021 Dec 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Sequence Analysis, DNA*/methods
SARS-CoV-2/*genetics
Spike Glycoprotein, Coronavirus/*genetics
COVID-19/virology ; Genotype ; Humans ; Mutation ; Protein Interaction Domains and Motifs/genetics ; SARS-CoV-2/classification
SCR Organism:
SARS-CoV-2 variants
Czasopismo naukowe
Tytuł:
Table2Vec-automated universal representation learning of enterprise data DNA for benchmarkable and explainable enterprise data science.
Autorzy:
Cao L; University of Technology Sydney, Sydney, Australia. .
Zhu C; University of Technology Sydney, Sydney, Australia.
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Źródło:
Scientific reports [Sci Rep] 2021 Dec 14; Vol. 11 (1), pp. 23957. Date of Electronic Publication: 2021 Dec 14.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Nucleic Acid*
Machine Learning*
Sequence Analysis, DNA*
Software*
Czasopismo naukowe
Tytuł:
A 16S rRNA gene sequencing based study of oral microbiota in migraine patients in China.
Autorzy:
Jiang W; Department of Neurology, Shanghai Jiaotong University School of Medicine Affiliated Renji Hospital, Shanghai, China.
Wang T; Department of Neurology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.
Liu C; Department of Neurology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
Deng M; Department of Neurology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
Ren X; Department of Neurology, Shanghai Jiaotong University School of Medicine Affiliated Renji Hospital, Shanghai, China.
Wang F; Department of Neurology, Shanghai Jiaotong University School of Medicine Affiliated Renji Hospital, Shanghai, China.
Zhang Y; Department of Neurology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.
Yu X; Department of Neurology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.
Yao L; Department of Cardiology, First Affiliated Hospital, Guangdong College of Pharmacy, Guangzhou, China.
Wang Y; Department of Neurology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.; Headache Center, China National Clinical Research Center for Neurological Diseases, Beijing, China.
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Źródło:
Bioengineered [Bioengineered] 2021 Dec; Vol. 12 (1), pp. 2523-2533.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Sequence Analysis, DNA*
Microbiota/*genetics
Migraine Disorders/*microbiology
Mouth/*microbiology
RNA, Ribosomal, 16S/*genetics
Adult ; Bacteria/classification ; Biodiversity ; Case-Control Studies ; China ; Female ; Humans ; Male ; Middle Aged ; Species Specificity
Czasopismo naukowe
Tytuł:
Sequence variations, flanking region mutations, and allele frequency at 31 autosomal STRs in the central Indian population by next generation sequencing (NGS).
Autorzy:
Dash HR; DNA Fingerprinting Unit, Integrated High-Tech Complex, Forensic Science Laboratory, Bhopal, Madhya Pradesh, 462003, India. .
Kaitholia K; DNA Fingerprinting Unit, Integrated High-Tech Complex, Forensic Science Laboratory, Bhopal, Madhya Pradesh, 462003, India.
Kumawat RK; DNA Division, State Forensic Science Laboratory, Jaipur, Rajasthan, 302016, India.
Singh AK; DNA Fingerprinting Unit, Integrated High-Tech Complex, Forensic Science Laboratory, Bhopal, Madhya Pradesh, 462003, India.
Shrivastava P; DNA Fingerprinting Unit, State Forensic Science Laboratory, Sagar, Madhya Pradesh, 769001, India.
Chaubey G; Cytogenetics Laboratory, Department of Zoology, Banaras Hindu University, Varanasi, 221005, India.
Das S; Department of Life Science, National Institute of Technology, Rourkela, Odisha, 470001, India.
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Źródło:
Scientific reports [Sci Rep] 2021 Dec 01; Vol. 11 (1), pp. 23238. Date of Electronic Publication: 2021 Dec 01.
Typ publikacji:
Journal Article
MeSH Terms:
Genetics, Population*
High-Throughput Nucleotide Sequencing*
Sequence Analysis, DNA*
Adult ; Female ; Forensic Genetics/methods ; Gene Frequency ; Humans ; India ; Male
Czasopismo naukowe
Tytuł:
Novel insights into clear cell renal cell carcinoma prognosis by comprehensive characterization of aberrant alternative splicing signature: a study based on large-scale sequencing data.
Autorzy:
Zhang D; Department of Breast Surgery, Qilu Hospital, Shandong University, Jinan, China.; Cheeloo College of Medicine, Shandong University, Jinan, China.
Zhang W; Cheeloo College of Medicine, Shandong University, Jinan, China.; Department of General Surgery, Shandong Provincial Qianfoshan Hospital, Shandong University, Jinan, China.
Sun R; Cheeloo College of Medicine, Shandong University, Jinan, China.; Department of Obstetrics and Gynecology, Qilu Hospital, Shandong University, Jinan, China.
Huang Z; Department of Urology, Jinan Central Hospital, Cheeloo College of Medicine, Shandong University, Jinan, China.
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Źródło:
Bioengineered [Bioengineered] 2021 Dec; Vol. 12 (1), pp. 1091-1110.
Typ publikacji:
Journal Article
MeSH Terms:
Sequence Analysis, DNA*
Alternative Splicing/*genetics
Carcinoma, Renal Cell/*genetics
Kidney Neoplasms/*genetics
Algorithms ; Calibration ; Cluster Analysis ; Cohort Studies ; Gene Regulatory Networks ; Humans ; Multivariate Analysis ; Nomograms ; Prognosis ; Proportional Hazards Models ; RNA Splicing Factors/genetics ; RNA Splicing Factors/metabolism ; ROC Curve ; Time Factors ; Treatment Outcome
Czasopismo naukowe
Tytuł:
Cell-free fetal DNA coming in all sizes and shapes.
Autorzy:
Chiu RWK; Centre for Novostics, Hong Kong Science Park, New Territories, Hong Kong SAR, China.; Li Ka Shing Institute of Health Sciences and Department of Chemical Pathology, The Chinese University of Hong Kong, New Territories, Hong Kong SAR, China.
Lo YMD; Centre for Novostics, Hong Kong Science Park, New Territories, Hong Kong SAR, China.; Li Ka Shing Institute of Health Sciences and Department of Chemical Pathology, The Chinese University of Hong Kong, New Territories, Hong Kong SAR, China.
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Źródło:
Prenatal diagnosis [Prenat Diagn] 2021 Sep; Vol. 41 (10), pp. 1193-1201. Date of Electronic Publication: 2021 May 07.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Cell-Free Nucleic Acids/*analysis
Sequence Analysis, DNA/*methods
Cell-Free Nucleic Acids/blood ; Female ; Humans ; Pregnancy ; Prenatal Diagnosis/methods ; Sequence Analysis, DNA/instrumentation ; Sequence Analysis, DNA/trends
Czasopismo naukowe
Tytuł:
Single-cell DNA and RNA sequencing of circulating tumor cells.
Autorzy:
Kojima M; Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan.; Natural Science Center for Basic Research and Development (N-BARD), Hiroshima University, Hiroshima, Japan.
Harada T; Natural Science Center for Basic Research and Development (N-BARD), Hiroshima University, Hiroshima, Japan.
Fukazawa T; Natural Science Center for Basic Research and Development (N-BARD), Hiroshima University, Hiroshima, Japan.
Kurihara S; Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan.
Saeki I; Department of Pediatric Surgery, Hiroshima University Hospital, Hiroshima, Japan.
Takahashi S; Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan.
Hiyama E; Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan. .; Natural Science Center for Basic Research and Development (N-BARD), Hiroshima University, Hiroshima, Japan. .
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Źródło:
Scientific reports [Sci Rep] 2021 Nov 24; Vol. 11 (1), pp. 22864. Date of Electronic Publication: 2021 Nov 24.
Typ publikacji:
Comparative Study; Journal Article
MeSH Terms:
Sequence Analysis, DNA*
Sequence Analysis, RNA*
Single-Cell Analysis*
Biomarkers, Tumor/*genetics
DNA, Neoplasm/*genetics
Neoplastic Cells, Circulating/*chemistry
Neuroblastoma/*genetics
RNA, Neoplasm/*genetics
Cell Line, Tumor ; Genetic Heterogeneity ; High-Throughput Nucleotide Sequencing ; Humans ; Neoplastic Cells, Circulating/pathology ; Neuroblastoma/blood ; Neuroblastoma/pathology ; Polymerase Chain Reaction ; Predictive Value of Tests ; Reproducibility of Results ; Whole Exome Sequencing
Czasopismo naukowe
Tytuł:
DNA bridges: A novel platform for single-molecule sequencing and other DNA-protein interaction applications.
Autorzy:
Righini M; Department of Advanced Research and Development, Centrillion Technologies, Palo Alto, California, United States of America.
Costa J; Department of Advanced Research and Development, Centrillion Technologies, Palo Alto, California, United States of America.
Zhou W; Department of Advanced Research and Development, Centrillion Technologies, Palo Alto, California, United States of America.
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Źródło:
PloS one [PLoS One] 2021 Nov 22; Vol. 16 (11), pp. e0260428. Date of Electronic Publication: 2021 Nov 22 (Print Publication: 2021).
Typ publikacji:
Journal Article
MeSH Terms:
Sequence Analysis, DNA*
DNA/*genetics
Animals ; DNA/analysis ; DNA/metabolism ; Fluorescent Dyes/analysis ; Fluorescent Dyes/metabolism ; High-Throughput Nucleotide Sequencing ; Humans ; Nucleotides/analysis ; Nucleotides/genetics ; Nucleotides/metabolism ; Optical Imaging ; Proteins/metabolism
Czasopismo naukowe
Tytuł:
Cell-Free DNA Variant Sequencing Using Plasma and AR-V7 Testing of Circulating Tumor Cells in Prostate Cancer Patients.
Autorzy:
Lieb V; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Abdulrahman A; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Weigelt K; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Hauch S; QIAGEN GmbH, 40724 Hilden, Germany.
Gombert M; QIAGEN GmbH, 40724 Hilden, Germany.
Guzman J; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Bellut L; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Goebell PJ; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Stöhr R; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.; Institute of Pathology, University Hospital Erlangen, FAU Erlangen-Nürnberg, 91054 Erlangen, Germany.
Hartmann A; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.; Institute of Pathology, University Hospital Erlangen, FAU Erlangen-Nürnberg, 91054 Erlangen, Germany.
Wullich B; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Taubert H; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Wach S; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
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Źródło:
Cells [Cells] 2021 Nov 18; Vol. 10 (11). Date of Electronic Publication: 2021 Nov 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genetic Variation*
Sequence Analysis, DNA*
Cell-Free Nucleic Acids/*blood
Neoplastic Cells, Circulating/*pathology
Prostatic Neoplasms/*blood
Prostatic Neoplasms/*genetics
Receptors, Androgen/*genetics
Aged ; Aged, 80 and over ; Humans ; Kaplan-Meier Estimate ; Male ; Middle Aged ; Prognosis ; Prostatic Neoplasms/pathology
Czasopismo naukowe
Tytuł:
Comprehensive Draft Genome Analyses of Three Rockfishes (Scorpaeniformes, Sebastiscus ) via Genome Survey Sequencing.
Autorzy:
Jia C; State Key Laboratory of Marine Resource Utilization in South China Sea, College of Ecology and Environment, Hainan University, Haikou 570228, China.
Yang T; Fishery College, Zhejiang Ocean University, Zhoushan 316022, China.
Yanagimoto T; Fisheries Resources Institute, Japan Fisheries Research and Education Agency, Kanagawa 236-8648, Japan.
Gao T; Fishery College, Zhejiang Ocean University, Zhoushan 316022, China.
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Źródło:
Current issues in molecular biology [Curr Issues Mol Biol] 2021 Nov 18; Vol. 43 (3), pp. 2048-2058. Date of Electronic Publication: 2021 Nov 18.
Typ publikacji:
Journal Article
MeSH Terms:
Genome*
Genomics*/methods
Sequence Analysis, DNA*
Whole Genome Sequencing*
Perciformes/*genetics
Animals ; Computational Biology/methods ; Microsatellite Repeats ; Perciformes/classification ; Phylogeny
Czasopismo naukowe
Tytuł:
Resequencing of 388 cassava accessions identifies valuable loci and selection for variation in heterozygosity.
Autorzy:
Hu W; Sanya Research Institute of Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan, China. .; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China. .; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China. .
Ji C; Sanya Research Institute of Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan, China.; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Liang Z; Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China.
Ye J; Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Ou W; Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Ding Z; Sanya Research Institute of Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan, China.; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Zhou G; Biomarker Technologies Corporation, Beijing, China.
Tie W; Sanya Research Institute of Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan, China.; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Yan Y; Sanya Research Institute of Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan, China.; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Yang J; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Ma L; Biomarker Technologies Corporation, Beijing, China.
Yang X; College of Food Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China.
Wei Y; Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan, China.
Jin Z; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Xie J; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Peng M; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Wang W; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Guo A; Sanya Research Institute of Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan, China.; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Xu B; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Guo J; Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.; Hainan Key Laboratory for Protection and Utilization of Tropical Bioresources, Hainan Institute for Tropical Agricultural Resources, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Chen S; Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Wang M; Biomarker Technologies Corporation, Beijing, China.
Zhou Y; Biomarker Technologies Corporation, Beijing, China.
Li X; Biomarker Technologies Corporation, Beijing, China.
Li R; Fu Foundation School of Engineering and Applied Science, Columbia University, New York, NY, 10027, USA.
Xiao X; Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Wan Z; Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
An F; Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Zhang J; Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Leng Q; Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China.
Li Y; Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
Shi H; Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan, China. .
Ming R; FAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Breeding and Multiple Utilization of Crops, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, China. .; Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA. .
Li K; Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China. .
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Źródło:
Genome biology [Genome Biol] 2021 Nov 16; Vol. 22 (1), pp. 316. Date of Electronic Publication: 2021 Nov 16.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Domestication*
Genetic Variation*
Sequence Analysis, DNA*
Manihot/*genetics
Chromosome Mapping ; Crops, Agricultural/genetics ; DNA-Binding Proteins/genetics ; Genome, Plant ; Genome-Wide Association Study ; Nuclear Proteins/genetics ; Phenotype ; Phylogeny ; Plant Proteins/genetics
Czasopismo naukowe
Tytuł:
Constructing germline research cohorts from the discarded reads of clinical tumor sequences.
Autorzy:
Gusev A; Division of Population Sciences, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA. alexander_.; Division of Genetics, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA. alexander_.; The Broad Institute of MIT & Harvard, Cambridge, MA, USA. alexander_.
Groha S; Division of Population Sciences, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA.; The Broad Institute of MIT & Harvard, Cambridge, MA, USA.
Taraszka K; Departments of Neurology and Computational Medicine, UCLA, Los Angeles, CA, USA.
Semenov YR; Department of Dermatology, Massachusetts General Hospital, Boston, MA, USA.
Zaitlen N; Departments of Neurology and Computational Medicine, UCLA, Los Angeles, CA, USA. .
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Źródło:
Genome medicine [Genome Med] 2021 Nov 08; Vol. 13 (1), pp. 179. Date of Electronic Publication: 2021 Nov 08.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Germ Cells*
Sequence Analysis, DNA*
Genetic Predisposition to Disease/*genetics
Neoplasms/*genetics
Alleles ; Computational Biology ; DNA Copy Number Variations ; Gene Frequency ; Genome-Wide Association Study ; Genotype ; Genotyping Techniques ; High-Throughput Nucleotide Sequencing ; Humans ; Mutation ; Polymorphism, Single Nucleotide
Czasopismo naukowe

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