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Wyszukujesz frazę ""Sequence Analysis, DNA"" wg kryterium: Temat


Tytuł:
Exome-wide benchmark of difficult-to-sequence regions using short-read next-generation DNA sequencing.
Autorzy:
Hijikata A; Laboratory of Computational Genomics, School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Hachioji, Tokyo 192-0392, Japan.
Suyama M; Division of Bioinformatics, Medical Institute of Bioregulation, Kyushu University, Higashi-ku, Fukuoka 812-8582, Japan.
Kikugawa S; DNA Chip Research Inc., Minato-ku, Tokyo 105-0022, Japan.
Matoba R; DNA Chip Research Inc., Minato-ku, Tokyo 105-0022, Japan.
Naruto T; Clinical Research Institute, Kanagawa Children's Medical Center, Minami-ku, Yokohama, Kanagawa 232-0066, Japan.
Enomoto Y; Clinical Research Institute, Kanagawa Children's Medical Center, Minami-ku, Yokohama, Kanagawa 232-0066, Japan.
Kurosawa K; Clinical Research Institute, Kanagawa Children's Medical Center, Minami-ku, Yokohama, Kanagawa 232-0066, Japan.; Division of Medical Genetics, Kanagawa Children's Medical Center, Minami-ku, Yokohama, Kanagawa 232-0066, Japan.
Harada N; Department of Fundamental Cell Technology, Center for iPS Cell Research and Application (CiRA), Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan.
Yanagi K; Department of Genome Medicine, National Center for Child Health and Development, Setagaya-ku, Tokyo 157-8535, Japan.
Kaname T; Department of Genome Medicine, National Center for Child Health and Development, Setagaya-ku, Tokyo 157-8535, Japan.
Miyako K; Department of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.
Takazawa M; Department of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.
Sasai H; Department of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.; Department of Pediatrics, Graduate School of Medicine, Gifu University, Gifu, Gifu 501-1194, Japan.
Hosokawa J; Department of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.
Itoga S; Department of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.
Yamaguchi T; Department of Medical Genetics, Shinshu University School of Medicine, Matsumoto, Nagano 390-8621, Japan.; Center for Medical Genetics, Shinshu University Hospital, Matsumoto, Nagano 390-8621, Japan.; Division of Clinical Sequencing, Shinshu University School of Medicine, Matsumoto, Nagano 390-8621, Japan.
Kosho T; Department of Medical Genetics, Shinshu University School of Medicine, Matsumoto, Nagano 390-8621, Japan.; Center for Medical Genetics, Shinshu University Hospital, Matsumoto, Nagano 390-8621, Japan.; Division of Clinical Sequencing, Shinshu University School of Medicine, Matsumoto, Nagano 390-8621, Japan.
Matsubara K; Division of Collaborative Research, National Research Institute for Child Health and Development, Setagaya-ku, Tokyo 157-8535, Japan.; Department of Molecular Endocrinology, National Research Institute for Child Health and Development, Setagaya-ku, Tokyo 157-8535, Japan.
Kuroki Y; Department of Genome Medicine, National Center for Child Health and Development, Setagaya-ku, Tokyo 157-8535, Japan.; Division of Collaborative Research, National Research Institute for Child Health and Development, Setagaya-ku, Tokyo 157-8535, Japan.
Fukami M; Department of Molecular Endocrinology, National Research Institute for Child Health and Development, Setagaya-ku, Tokyo 157-8535, Japan.
Adachi K; Organization for Research Initiative and Promotion, Tottori University, Yonago, Tottori 680-8550, Japan.
Nanba E; Organization for Research Initiative and Promotion, Tottori University, Yonago, Tottori 680-8550, Japan.
Tsuchida N; Department of Human Genetics, Yokohama City University Graduate School of Medicine, Kanazawa-ku, Yokohama, Kanagawa 236-0027, Japan.; Department of Rare Disease Genomics, Yokohama City University Hospital, Yokohama, Kanagawa 236-0027, Japan.
Uchiyama Y; Department of Human Genetics, Yokohama City University Graduate School of Medicine, Kanazawa-ku, Yokohama, Kanagawa 236-0027, Japan.; Department of Rare Disease Genomics, Yokohama City University Hospital, Yokohama, Kanagawa 236-0027, Japan.
Matsumoto N; Department of Human Genetics, Yokohama City University Graduate School of Medicine, Kanazawa-ku, Yokohama, Kanagawa 236-0027, Japan.
Nishimura K; Xcoo, Inc., Bunkyo-ku, Tokyo 113-0033, Japan.
Ohara O; Department of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.; Division of Clinical Sequencing, Shinshu University School of Medicine, Matsumoto, Nagano 390-8621, Japan.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2024 Jan 11; Vol. 52 (1), pp. 114-124.
Typ publikacji:
Journal Article
MeSH Terms:
Exome*/genetics
High-Throughput Nucleotide Sequencing*/methods
High-Throughput Nucleotide Sequencing*/standards
Sequence Analysis, DNA*/methods
Sequence Analysis, DNA*/standards
Humans ; DNA
Czasopismo naukowe
Tytuł:
Genome-based reclassification of Kitasatospora niigatensis as a later heterotypic synonym of Kitasatospora cineracea Tajima et al. (2001).
Autorzy:
Bouznada K; Laboratoire de Biologie des Systèmes Microbiens (LBSM), Ecole Normale Supérieure Cheikh Mohamed El Bachir El Ibrahimi, BP 92, Kouba, Algiers, Algeria. .
Belaouni HA; Laboratoire de Biologie des Systèmes Microbiens (LBSM), Ecole Normale Supérieure Cheikh Mohamed El Bachir El Ibrahimi, BP 92, Kouba, Algiers, Algeria.
Meklat A; Laboratoire de Biologie des Systèmes Microbiens (LBSM), Ecole Normale Supérieure Cheikh Mohamed El Bachir El Ibrahimi, BP 92, Kouba, Algiers, Algeria.
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Źródło:
Antonie van Leeuwenhoek [Antonie Van Leeuwenhoek] 2023 Dec; Vol. 116 (12), pp. 1327-1335. Date of Electronic Publication: 2023 Oct 07.
Typ publikacji:
Journal Article
MeSH Terms:
Sequence Analysis, DNA*
RNA, Ribosomal, 16S/genetics ; DNA, Bacterial/genetics ; Phylogeny ; Nucleic Acid Hybridization ; Bacterial Typing Techniques
SCR Organism:
Kitasatospora niigatensis; Kitasatospora cineracea
Czasopismo naukowe
Tytuł:
Improving Enhancer Identification with a Multi-Classifier Stacked Ensemble Model.
Autorzy:
Mir BA; Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju 54896, South Korea. Electronic address: .
Rehman MU; Khalifa University Center for Autonomous Robotic Systems (KUCARS), Khalifa University, Abu Dhabi 127788, United Arab Emirates. Electronic address: .
Tayara H; School of international Engineering and Science, Jeonbuk National University, Jeonju 54896, South Korea. Electronic address: .
Chong KT; Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju 54896, South Korea; Advances Electronics and Information Research Center, Jeonbuk National University, Jeonju 54896, South Korea. Electronic address: .
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Źródło:
Journal of molecular biology [J Mol Biol] 2023 Dec 01; Vol. 435 (23), pp. 168314. Date of Electronic Publication: 2023 Oct 16.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Computational Biology*/methods
Enhancer Elements, Genetic*
Sequence Analysis, DNA*/methods
Machine Learning*
DNA/chemistry ; DNA/genetics ; Transcription Factors/chemistry
Czasopismo naukowe
Tytuł:
Whole genome analyses reveal weak signatures of population structure and environmentally associated local adaptation in an important North American pollinator, the bumble bee Bombus vosnesenskii.
Autorzy:
Heraghty SD; Department of Biological Sciences, The University of Alabama, Tuscaloosa, Alabama, USA.
Jackson JM; Department of Biological Sciences, The University of Alabama, Tuscaloosa, Alabama, USA.
Lozier JD; Department of Biological Sciences, The University of Alabama, Tuscaloosa, Alabama, USA.
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Źródło:
Molecular ecology [Mol Ecol] 2023 Oct; Vol. 32 (20), pp. 5479-5497. Date of Electronic Publication: 2023 Sep 13.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Sequence Analysis, DNA*
Bees/genetics ; Animals ; Population Density ; North America
Czasopismo naukowe
Tytuł:
Ultra-fast deep-learned CNS tumour classification during surgery.
Autorzy:
Vermeulen C; Oncode Institute, Utrecht, The Netherlands.; Center for Molecular Medicine, UMC Utrecht, Utrecht, The Netherlands.
Pagès-Gallego M; Oncode Institute, Utrecht, The Netherlands.; Center for Molecular Medicine, UMC Utrecht, Utrecht, The Netherlands.
Kester L; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Kranendonk MEG; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Wesseling P; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.; Department of Pathology, Amsterdam University Medical Centers/VUmc, Amsterdam, The Netherlands.
Verburg N; Department of Neurosurgery, Amsterdam University Medical Centers/VUmc, Amsterdam, The Netherlands.
de Witt Hamer P; Department of Neurosurgery, Amsterdam University Medical Centers/VUmc, Amsterdam, The Netherlands.
Kooi EJ; Department of Pathology, Amsterdam University Medical Centers/VUmc, Amsterdam, The Netherlands.
Dankmeijer L; Department of Pathology, Amsterdam University Medical Centers/VUmc, Amsterdam, The Netherlands.; Department of Neurosurgery, Amsterdam University Medical Centers/VUmc, Amsterdam, The Netherlands.
van der Lugt J; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
van Baarsen K; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Hoving EW; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Tops BBJ; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands. .
de Ridder J; Oncode Institute, Utrecht, The Netherlands. .; Center for Molecular Medicine, UMC Utrecht, Utrecht, The Netherlands. .
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Źródło:
Nature [Nature] 2023 Oct; Vol. 622 (7984), pp. 842-849. Date of Electronic Publication: 2023 Oct 11.
Typ publikacji:
Journal Article
MeSH Terms:
Central Nervous System Neoplasms*/classification
Central Nervous System Neoplasms*/diagnosis
Central Nervous System Neoplasms*/genetics
Central Nervous System Neoplasms*/surgery
Clinical Decision-Making*/methods
Deep Learning*/standards
Intraoperative Care*/methods
Sequence Analysis, DNA*/methods
Child ; Humans ; Methylation ; Retrospective Studies ; Time Factors
Czasopismo naukowe
Tytuł:
Whole-genome resequencing analysis of the medicinal plant Gardenia jasminoides .
Autorzy:
Xu X; Fujian Academy of Forestry Sciences, Fuzhou, Fujian, China.; College of Landscape and Architecture, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Chen B; Fujian Academy of Forestry Sciences, Fuzhou, Fujian, China.
Zhang J; Fujian Academy of Forestry Sciences, Fuzhou, Fujian, China.
Lan S; College of Landscape and Architecture, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Wu S; College of Landscape and Architecture, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
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Źródło:
PeerJ [PeerJ] 2023 Sep 18; Vol. 11, pp. e16056. Date of Electronic Publication: 2023 Sep 18 (Print Publication: 2023).
Typ publikacji:
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gardenia*/genetics
Gardenia*/metabolism
Plants, Medicinal*/genetics
Plants, Medicinal*/metabolism
Sequence Analysis, DNA*
Carotenoids*/metabolism
Genomics ; China ; Genetic Variation/genetics
Czasopismo naukowe
Tytuł:
The complete sequence of a human Y chromosome.
Autorzy:
Rhie A; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Nurk S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.; Oxford Nanopore Technologies Inc., Oxford, UK.
Cechova M; Faculty of Informatics, Masaryk University, Brno, Czech Republic.; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.
Hoyt SJ; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.
Taylor DJ; Department of Biology, Johns Hopkins University, Baltimore, MD, USA.
Altemose N; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Hook PW; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Rautiainen M; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Alexandrov IA; Federal Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.; Center for Algorithmic Biotechnology, Saint Petersburg State University, St Petersburg, Russia.; Department of Anatomy and Anthropology and Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv-Yafo, Israel.
Allen J; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Asri M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Bzikadze AV; Graduate Program in Bioinformatics and Systems Biology, University of California, San Diego, CA, USA.
Chen NC; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Chin CS; GeneDX Holdings Corp, Stamford, CT, USA.; Foundation of Biological Data Science, Belmont, CA, USA.
Diekhans M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Flicek P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.; Department of Genetics, University of Cambridge, Cambridge, UK.
Formenti G; The Rockefeller University, New York, NY, USA.
Fungtammasan A; DNAnexus, Inc., Mountain View, CA, USA.
Garcia Giron C; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Garrison E; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA.
Gershman A; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Gerton JL; Stowers Institute for Medical Research, Kansas City, MO, USA.; University of Kansas Medical Center, Kansas City, MO, USA.
Grady PGS; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.
Guarracino A; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA.; Genomics Research Centre, Human Technopole, Milan, Italy.
Haggerty L; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Halabian R; Institute of Bioinformatics, Faculty of Medicine, University of Münster, Münster, Germany.
Hansen NF; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.; Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Harris R; Department of Biology, Pennsylvania State University, University Park, PA, USA.
Hartley GA; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.
Harvey WT; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Haukness M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Heinz J; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Hourlier T; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Hubley RM; Institute for Systems Biology, Seattle, WA, USA.
Hunt SE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Hwang S; XDBio Program, Johns Hopkins University, Baltimore, MD, USA.
Jain M; Department of Bioengineering, Department of Physics, Northeastern University, Boston, MA, USA.
Kesharwani RK; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA.
Lewis AP; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Li H; Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, USA.; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
Logsdon GA; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Lucas JK; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Makalowski W; Institute of Bioinformatics, Faculty of Medicine, University of Münster, Münster, Germany.
Markovic C; Genome Technology Access Center at the McDonnell Genome Institute, Washington University, St. Louis, MO, USA.
Martin FJ; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Mc Cartney AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
McCoy RC; Department of Biology, Johns Hopkins University, Baltimore, MD, USA.
McDaniel J; Biosystems and Biomaterials Division, National Institute of Standards and Technology, Gaithersburg, MD, USA.
McNulty BM; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Medvedev P; Department of Computer Science and Engineering, Pennsylvania State University, University Park, PA, USA.; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.; Center for Computational Biology and Bioinformatics, Pennsylvania State University, University Park, PA, USA.
Mikheenko A; Center for Algorithmic Biotechnology, Saint Petersburg State University, St Petersburg, Russia.; UCL Queen Square Institute of Neurology, UCL, London, UK.
Munson KM; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Murphy TD; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Olsen HE; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Olson ND; Biosystems and Biomaterials Division, National Institute of Standards and Technology, Gaithersburg, MD, USA.
Paulin LF; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA.
Porubsky D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Potapova T; Stowers Institute for Medical Research, Kansas City, MO, USA.
Ryabov F; Masters Program in National Research University Higher School of Economics, Moscow, Russia.
Salzberg SL; Departments of Biomedical Engineering, Computer Science, and Biostatistics, Johns Hopkins University, Baltimore, MD, USA.
Sauria MEG; Department of Biology, Johns Hopkins University, Baltimore, MD, USA.
Sedlazeck FJ; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA.; Department of Computer Science, Rice University, Houston, TX, USA.
Shafin K; Google Inc., Mountain View, CA, USA.
Shepelev VA; Institute of Molecular Genetics, Moscow, Russia.
Shumate A; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Storer JM; Institute for Systems Biology, Seattle, WA, USA.
Surapaneni L; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Taravella Oill AM; Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, USA.
Thibaud-Nissen F; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Timp W; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Tomaszkiewicz M; Department of Biology, Pennsylvania State University, University Park, PA, USA.; Department of Biomedical Engineering, Pennsylvania State University, State College, PA, USA.
Vollger MR; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Walenz BP; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Watwood AC; Department of Biology, Pennsylvania State University, University Park, PA, USA.
Weissensteiner MH; Department of Biology, Pennsylvania State University, University Park, PA, USA.
Wenger AM; Pacific Biosciences, Menlo Park, CA, USA.
Wilson MA; Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, USA.
Zarate S; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Zhu Y; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA.
Zook JM; Biosystems and Biomaterials Division, National Institute of Standards and Technology, Gaithersburg, MD, USA.
Eichler EE; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Investigator, Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA.
O'Neill RJ; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.; Department of Genetics and Genome Sciences, UConn Health, Farmington, CT, USA.
Schatz MC; Department of Biology, Johns Hopkins University, Baltimore, MD, USA.; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Miga KH; Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA, USA.
Makova KD; Department of Biology, Pennsylvania State University, University Park, PA, USA.
Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA. .
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Źródło:
Nature [Nature] 2023 Sep; Vol. 621 (7978), pp. 344-354. Date of Electronic Publication: 2023 Aug 23.
Typ publikacji:
Journal Article
MeSH Terms:
Chromosomes, Human, Y*/genetics
Genomics*/methods
Genomics*/standards
Sequence Analysis, DNA*/standards
Humans ; Base Sequence ; DNA, Satellite/genetics ; Genetic Variation/genetics ; Genetics, Population ; Heterochromatin/genetics ; Multigene Family/genetics ; Reference Standards ; Segmental Duplications, Genomic/genetics ; Tandem Repeat Sequences/genetics ; Telomere/genetics
Czasopismo naukowe
Tytuł:
A critical spotlight on the paradigms of FFPE-DNA sequencing.
Autorzy:
Steiert TA; Institute of Clinical Molecular Biology, Christian-Albrechts-University and University Medical Center Schleswig-Holstein, Kiel 24105, Germany.
Parra G; Center for Genomic Regulation, Centro Nacional de Análisis Genómico, Barcelona 08028, Spain.
Gut M; Center for Genomic Regulation, Centro Nacional de Análisis Genómico, Barcelona 08028, Spain.
Arnold N; Department of Gynaecology and Obstetrics, University Medical Center Schleswig-Holstein, Campus Kiel, Kiel 24105, Germany.
Trotta JR; Center for Genomic Regulation, Centro Nacional de Análisis Genómico, Barcelona 08028, Spain.
Tonda R; Center for Genomic Regulation, Centro Nacional de Análisis Genómico, Barcelona 08028, Spain.
Moussy A; Le Centre de référence, d'innovation, d'expertise et de transfert (CRefIX), PFMG 2025, Évry 91057, France.
Gerber Z; Centre National de Recherche en Génomique Humaine (CNRGH), Institut de Biologie François Jacob, CEA, Université Paris-Saclay, Évry 91057, France.
Abuja PM; Diagnostic & Research Center for Molecular Biomedicine, Diagnostic & Research Institute of Pathology, Medical University of Graz, Graz 8010, Austria.
Zatloukal K; Diagnostic & Research Center for Molecular Biomedicine, Diagnostic & Research Institute of Pathology, Medical University of Graz, Graz 8010, Austria.
Röcken C; Department of Pathology, University Medical Center Schleswig-Holstein, Campus Kiel, Kiel 24105, Germany.
Folseraas T; Norwegian PSC Research Center Department of Transplantation Medicine, Division of Surgery, Inflammatory Medicine and Transplantation, Oslo University Hospital Rikshospitalet, Oslo 0372, Norway.; Section of Gastroenterology, Department of Transplantation Medicine, Division of Surgery, Inflammatory Diseases and Transplantation, Oslo University Hospital Rikshospitalet, Oslo 0372, Norway.
Grimsrud MM; Norwegian PSC Research Center Department of Transplantation Medicine, Division of Surgery, Inflammatory Medicine and Transplantation, Oslo University Hospital Rikshospitalet, Oslo 0372, Norway.; Institute of Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo 0372, Norway.
Vogel A; Department of Gastroenterology, Hepatology and Endocrinology, Hannover Medical School, Hanover 30625, Germany.
Goeppert B; Institute of Pathology, University Hospital Heidelberg, Heidelberg 69120, Germany.; Institute of Pathology and Neuropathology, RKH Klinikum Ludwigsburg, Ludwigsburg 71640, Germany.
Roessler S; Institute of Pathology, University Hospital Heidelberg, Heidelberg 69120, Germany.
Hinz S; Department of General Surgery, University Medicine Rostock, Rostock 18057, Germany.
Schafmayer C; Department of General Surgery, University Medicine Rostock, Rostock 18057, Germany.
Rosenstiel P; Institute of Clinical Molecular Biology, Christian-Albrechts-University and University Medical Center Schleswig-Holstein, Kiel 24105, Germany.
Deleuze JF; Le Centre de référence, d'innovation, d'expertise et de transfert (CRefIX), PFMG 2025, Évry 91057, France.; Centre National de Recherche en Génomique Humaine (CNRGH), Institut de Biologie François Jacob, CEA, Université Paris-Saclay, Évry 91057, France.
Gut IG; Center for Genomic Regulation, Centro Nacional de Análisis Genómico, Barcelona 08028, Spain.
Franke A; Institute of Clinical Molecular Biology, Christian-Albrechts-University and University Medical Center Schleswig-Holstein, Kiel 24105, Germany.
Forster M; Institute of Clinical Molecular Biology, Christian-Albrechts-University and University Medical Center Schleswig-Holstein, Kiel 24105, Germany.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Aug 11; Vol. 51 (14), pp. 7143-7162.
Typ publikacji:
Review; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Sequence Analysis, DNA*/methods
DNA/genetics ; DNA/analysis ; Formaldehyde ; Paraffin Embedding/methods ; Tissue Fixation/methods
Czasopismo naukowe
Tytuł:
Operon Finder: A Deep Learning-based Web Server for Accurate Prediction of Prokaryotic Operons.
Autorzy:
Tomar TS; Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India.
Dasgupta P; Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India.
Kanaujia SP; Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India. Electronic address: .
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Źródło:
Journal of molecular biology [J Mol Biol] 2023 Jul 15; Vol. 435 (14), pp. 167921. Date of Electronic Publication: 2022 Dec 14.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Deep Learning*
Operon*/genetics
Sequence Analysis, DNA*/methods
Software*
Humans ; Algorithms ; Genome, Bacterial ; Prokaryotic Cells ; Internet
Czasopismo naukowe
Tytuł:
BioSeq-Diabolo: Biological sequence similarity analysis using Diabolo.
Autorzy:
Li H; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.
Liu B; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.; Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology, Beijing, China.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2023 Jun 20; Vol. 19 (6), pp. e1011214. Date of Electronic Publication: 2023 Jun 20 (Print Publication: 2023).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Sequence Analysis, DNA*/methods
Sequence Analysis, Protein*/methods
Natural Language Processing ; Internet ; Computational Biology ; Semantics
Czasopismo naukowe
Tytuł:
Proposal of Streptomyces sporoverrucosus Gause et al. 1983 as a later heterotypic synonym of Streptomyces goshikiensis Niida et al. 1966 and an emended description of Streptomyces goshikiensis.
Autorzy:
Mo P; State Key Laboratory of Development Biology of Freshwater Fish Sub-Center for Health Aquaculture, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, Changde Key Innovation Team for Wetland Biology and Environmental Ecology, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, 415000, Hunan Province, People's Republic of China.
Xu L; State Key Laboratory of Development Biology of Freshwater Fish Sub-Center for Health Aquaculture, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, Changde Key Innovation Team for Wetland Biology and Environmental Ecology, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, 415000, Hunan Province, People's Republic of China.
Chen D; Key Laboratory of Comprehensive Utilization of Advantage Plants Resources in Hunan South, Hunan Engineering Research Center for Research and Development of Plant Resources in Nanling Area, College of Chemistry and Bioengineering, Hunan University of Science and Engineering, Hunan Yongzhou, 425199, Hunan Province, People's Republic of China.
Chen Z; State Key Laboratory of Development Biology of Freshwater Fish Sub-Center for Health Aquaculture, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, Changde Key Innovation Team for Wetland Biology and Environmental Ecology, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, 415000, Hunan Province, People's Republic of China.
Li B; Key Laboratory of Comprehensive Utilization of Advantage Plants Resources in Hunan South, Hunan Engineering Research Center for Research and Development of Plant Resources in Nanling Area, College of Chemistry and Bioengineering, Hunan University of Science and Engineering, Hunan Yongzhou, 425199, Hunan Province, People's Republic of China. .
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Źródło:
Antonie van Leeuwenhoek [Antonie Van Leeuwenhoek] 2023 Jun; Vol. 116 (6), pp. 531-540. Date of Electronic Publication: 2023 Apr 07.
Typ publikacji:
Journal Article
MeSH Terms:
Sequence Analysis, DNA*
Phylogeny ; RNA, Ribosomal, 16S/genetics ; DNA, Bacterial/genetics ; Bacterial Typing Techniques ; Nucleic Acid Hybridization
SCR Organism:
Streptomyces sporoverrucosus; Streptomyces goshikiensis
Czasopismo naukowe
Tytuł:
Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
Autorzy:
Hotaling S; Department of Watershed Sciences, Utah State University, Logan, UT, USA. .
Wilcox ER; DNA Sequencing Center, Department of Biology, Brigham Young University, Provo, UT, USA.
Heckenhauer J; LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG), Frankfurt, Germany.; Department of Terrestrial Zoology, Senckenberg Research Institute and Natural History Museum Frankfurt, 60325, Frankfurt, Germany.
Stewart RJ; Department of Biomedical Engineering, University of Utah, Salt Lake City, UT, USA.
Frandsen PB; LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG), Frankfurt, Germany. paul_.; Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USA. paul_.; Data Science Lab, Smithsonian Institution, Washington, DC, USA. paul_.
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Źródło:
BMC genomics [BMC Genomics] 2023 Mar 16; Vol. 24 (1), pp. 117. Date of Electronic Publication: 2023 Mar 16.
Typ publikacji:
Comparative Study; Journal Article
MeSH Terms:
Genomics*/methods
Genomics*/standards
Genomics*/trends
Biodiversity*
Sequence Analysis, DNA*/methods
Sequence Analysis, DNA*/standards
High-Throughput Nucleotide Sequencing*/methods
High-Throughput Nucleotide Sequencing*/standards
High-Throughput Nucleotide Sequencing*/trends
Insecta/classification ; Insecta/genetics ; Fibroins/genetics ; Contig Mapping ; Genome, Insect/genetics ; Animals ; Databases, Nucleic Acid ; Reproducibility of Results ; Meta-Analysis as Topic ; Datasets as Topic ; Plants/genetics ; Genome, Plant/genetics
Czasopismo naukowe
Tytuł:
Graph construction method impacts variation representation and analyses in a bovine super-pangenome.
Autorzy:
Leonard AS; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8092, Zurich, Switzerland. .
Crysnanto D; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8092, Zurich, Switzerland.
Mapel XM; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8092, Zurich, Switzerland.
Bhati M; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8092, Zurich, Switzerland.
Pausch H; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8092, Zurich, Switzerland. .
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Źródło:
Genome biology [Genome Biol] 2023 May 22; Vol. 24 (1), pp. 124. Date of Electronic Publication: 2023 May 22.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Cattle*/genetics
Genome*
Sequence Analysis, DNA*/methods
Animals ; Minisatellite Repeats
Czasopismo naukowe
Tytuł:
[Central role of massive sequencing and accurate identification of microorganisms in the development of safe agricultural bioinputs].
Autorzy:
Sauka DH; Editor Asociado de Revista Argentina de Microbiología, Buenos Aires, Argentina. Electronic address: .
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Transliterated Title:
El papel central de la secuenciación masiva y la correcta identificación de microorganismos en el desarrollo de bioinsumos agrícolas seguros.
Źródło:
Revista Argentina de microbiologia [Rev Argent Microbiol] 2023 Apr-Jun; Vol. 55 (2), pp. 109-110.
Typ publikacji:
Journal Article
MeSH Terms:
Agriculture*
Sequence Analysis, DNA*
Czasopismo naukowe
Tytuł:
A proposed metric set for evaluation of genome assembly quality.
Autorzy:
Wang P; Key Laboratory of Crop Gene Resources and Germplasm Enhancement in Southern China, Ministry of Agriculture and Rural Affairs, Institute of Tropical Crop Genetic Resources, Chinese Academy of Tropical Agricultural Sciences, No. 4 Xueyuan Rd, Haikou City, Hainan 571101, China. Electronic address: .
Wang F; School of Electrical and Electronic Engineering, Shanghai Institute of Technology, No. 100 Haiquan Rd, Shanghai 201416, China. Electronic address: .
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Źródło:
Trends in genetics : TIG [Trends Genet] 2023 Mar; Vol. 39 (3), pp. 175-186. Date of Electronic Publication: 2022 Nov 17.
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
Sequence Analysis, DNA*/methods
Genomics*/standards
Czasopismo naukowe
Tytuł:
De novo sequencing, diploid assembly, and annotation of the black carpenter ant, Camponotus pennsylvanicus, and its symbionts by one person for $1000, using nanopore sequencing.
Autorzy:
Faulk C; Department of Animal Science, University of Minnesota, College of Food, Agricultural and Natural Resource Sciences, 1334 Eckles Ave, 350 ABLMS, St. Paul, MN 55108, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Jan 11; Vol. 51 (1), pp. 17-28.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Ants*/genetics
Ants*/microbiology
High-Throughput Nucleotide Sequencing*/economics
High-Throughput Nucleotide Sequencing*/methods
Sequence Analysis, DNA*/economics
Sequence Analysis, DNA*/methods
Genome, Insect*
Animals ; Humans ; Diploidy ; Genome, Mitochondrial ; Nanopore Sequencing ; Symbiosis ; Wolbachia/genetics ; Wolbachia/physiology ; Enterobacteriaceae/classification ; Enterobacteriaceae/genetics ; Enterobacteriaceae/physiology
Czasopismo naukowe
Tytuł:
Clostridium lamae sp. nov., a novel bacterium isolated from the fresh feces of alpaca.
Autorzy:
Li X; NHC Key Laboratory of Human Disease Comparative Medicine, Beijing Engineering Research Center for Experimental Animal Models of Human Critical Diseases, International Center for Technology and Innovation of Animal Model, Comparative Medicine Center, Institute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College (PUMC), Beijing, 100021, China.; Changping National Laboratory (CPNL), Beijing, 102299, China.
Li M; Institute of Animal Science, Chinese Academy of Agricultural Sciences, Technology Support Platform, Beijing, 100193, China.
Shi W; NHC Key Laboratory of Human Disease Comparative Medicine, Beijing Engineering Research Center for Experimental Animal Models of Human Critical Diseases, International Center for Technology and Innovation of Animal Model, Comparative Medicine Center, Institute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College (PUMC), Beijing, 100021, China.; Changping National Laboratory (CPNL), Beijing, 102299, China.
Li X; NHC Key Laboratory of Human Disease Comparative Medicine, Beijing Engineering Research Center for Experimental Animal Models of Human Critical Diseases, International Center for Technology and Innovation of Animal Model, Comparative Medicine Center, Institute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College (PUMC), Beijing, 100021, China.; Changping National Laboratory (CPNL), Beijing, 102299, China.
Xiang Z; NHC Key Laboratory of Human Disease Comparative Medicine, Beijing Engineering Research Center for Experimental Animal Models of Human Critical Diseases, International Center for Technology and Innovation of Animal Model, Comparative Medicine Center, Institute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College (PUMC), Beijing, 100021, China.; Changping National Laboratory (CPNL), Beijing, 102299, China.
Su L; NHC Key Laboratory of Human Disease Comparative Medicine, Beijing Engineering Research Center for Experimental Animal Models of Human Critical Diseases, International Center for Technology and Innovation of Animal Model, Comparative Medicine Center, Institute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College (PUMC), Beijing, 100021, China. .; Changping National Laboratory (CPNL), Beijing, 102299, China. .
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Źródło:
Antonie van Leeuwenhoek [Antonie Van Leeuwenhoek] 2024 Feb 17; Vol. 117 (1), pp. 36. Date of Electronic Publication: 2024 Feb 17.
Typ publikacji:
Journal Article
MeSH Terms:
Camelids, New World*/genetics
Animals ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; DNA, Bacterial/genetics ; Phospholipids/chemistry ; Fatty Acids/chemistry ; Clostridium ; Gram-Positive Bacteria/genetics ; Feces ; Sequence Analysis, DNA ; Bacterial Typing Techniques
Czasopismo naukowe
Tytuł:
Choice of DNA extraction method affects stool microbiome recovery and subsequent phenotypic association analyses.
Autorzy:
Fernández-Pato A; Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Sinha T; Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Gacesa R; Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.; Department of Gastroenterology and Hepatology, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Andreu-Sánchez S; Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.; Department of Pediatrics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Gois MFB; Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Gelderloos-Arends J; Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Jansen DBH; Department of Gastroenterology and Hepatology, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Kruk M; Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Jaeger M; Department of Internal Medicine and Radboud Center for Infectious Diseases, Radboud University Medical Center, Nijmegen, the Netherlands.
Joosten LAB; Department of Internal Medicine and Radboud Center for Infectious Diseases, Radboud University Medical Center, Nijmegen, the Netherlands.; Department of Medical Genetics, Iuliu Hatieganu University of Medicine and Pharmacy, Cluj-Napoca, Romania.
Netea MG; Department of Internal Medicine and Radboud Center for Infectious Diseases, Radboud University Medical Center, Nijmegen, the Netherlands.; Department of Genomics and Immunoregulation, Life and Medical Sciences Institute, University of Bonn, Bonn, Germany.
Weersma RK; Department of Gastroenterology and Hepatology, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Wijmenga C; Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Harmsen HJM; Medical Microbiology and Infection Prevention, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Fu J; Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.; Department of Pediatrics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Zhernakova A; Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands.
Kurilshikov A; Department of Genetics, University of Groningen, University Medical Center Groningen, Groningen, 9713GZ, the Netherlands. .
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Źródło:
Scientific reports [Sci Rep] 2024 Feb 16; Vol. 14 (1), pp. 3911. Date of Electronic Publication: 2024 Feb 16.
Typ publikacji:
Journal Article
MeSH Terms:
Microbiota*/genetics
Gastrointestinal Microbiome*/genetics
Humans ; DNA, Bacterial/genetics ; DNA, Bacterial/analysis ; RNA, Ribosomal, 16S/genetics ; DNA ; Sequence Analysis, DNA ; Feces/microbiology ; Metagenomics/methods
Czasopismo naukowe
Tytuł:
A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing.
Autorzy:
Ahsan MU; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Gouru A; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.; Department of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Chan J; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Zhou W; Center for Computational and Genomic Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.; Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Wang K; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA. .; Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA. .
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Źródło:
Nature communications [Nat Commun] 2024 Feb 16; Vol. 15 (1), pp. 1448. Date of Electronic Publication: 2024 Feb 16.
Typ publikacji:
Journal Article
MeSH Terms:
Deep Learning*
Nanopore Sequencing*
Nanopores*
Sequence Analysis, DNA/methods ; High-Throughput Nucleotide Sequencing/methods ; DNA Methylation
Czasopismo naukowe

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