Temat: "Sequence Analysis, DNA" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: BioSeq-Diabolo: Biological sequence similarity analysis using Diabolo.
Autorzy:: Li H; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.
Liu B; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.; Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology, Beijing, China.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2023 Jun 20; Vol. 19 (6), pp. e1011214. Date of Electronic Publication: 2023 Jun 20 (Print Publication: 2023).
Typ publikacji:: Journal Article
MeSH Terms:: Software*
Sequence Analysis, DNA*/methods
Sequence Analysis, Protein*/methods
Natural Language Processing ; Internet ; Computational Biology ; Semantics

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Skocz do pozycji: 2.

Tytuł:: Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
Autorzy:: Hotaling S; Department of Watershed Sciences, Utah State University, Logan, UT, USA. .
Wilcox ER; DNA Sequencing Center, Department of Biology, Brigham Young University, Provo, UT, USA.
Heckenhauer J; LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG), Frankfurt, Germany.; Department of Terrestrial Zoology, Senckenberg Research Institute and Natural History Museum Frankfurt, 60325, Frankfurt, Germany.
Stewart RJ; Department of Biomedical Engineering, University of Utah, Salt Lake City, UT, USA.
Frandsen PB; LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG), Frankfurt, Germany. paul_.; Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USA. paul_.; Data Science Lab, Smithsonian Institution, Washington, DC, USA. paul_.; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2023 Mar 16; Vol. 24 (1), pp. 117. Date of Electronic Publication: 2023 Mar 16.
Typ publikacji:: Comparative Study; Journal Article
MeSH Terms:: Genomics*/methods
Genomics*/standards
Genomics*/trends
Biodiversity*
Sequence Analysis, DNA*/methods
Sequence Analysis, DNA*/standards
High-Throughput Nucleotide Sequencing*/methods
High-Throughput Nucleotide Sequencing*/standards
High-Throughput Nucleotide Sequencing*/trends
Insecta/classification ; Insecta/genetics ; Fibroins/genetics ; Contig Mapping ; Genome, Insect/genetics ; Animals ; Databases, Nucleic Acid ; Reproducibility of Results ; Meta-Analysis as Topic ; Datasets as Topic ; Plants/genetics ; Genome, Plant/genetics

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Skocz do pozycji: 3.

Tytuł:: High-throughput DNA extraction and cost-effective miniaturized metagenome and amplicon library preparation of soil samples for DNA sequencing.
Autorzy:: Jensen TBN; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Dall SM; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Knutsson S; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Karst SM; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Albertsen M; Center for Microbial Communities, Dept. of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Apr 04; Vol. 19 (4), pp. e0301446. Date of Electronic Publication: 2024 Apr 04 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Metagenome*
High-Throughput Nucleotide Sequencing*/methods
Cost-Benefit Analysis ; Sequence Analysis, DNA/methods ; DNA ; Soil ; Metagenomics/methods

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Skocz do pozycji: 4.

Tytuł:: Haplotype-resolved assembly of auto-polyploid genomes via combining Hi-C and gametic data.
Autorzy:: Zhang X; College of Computer Science and Technology, Taiyuan University of Technology, Taiyuan, 030024, Shanxi, China.; Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
Li D; College of Computer Science and Technology, Taiyuan University of Technology, Taiyuan, 030024, Shanxi, China. .
Pan W; Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2024 Apr 03; Vol. 14 (1), pp. 7892. Date of Electronic Publication: 2024 Apr 03.
Typ publikacji:: Journal Article
MeSH Terms:: Polyploidy*
Germ Cells*
Humans ; Sequence Analysis, DNA/methods ; Haplotypes/genetics ; Alleles

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Skocz do pozycji: 5.

Tytuł:: The invasive land flatworm Arthurdendyus triangulatus has repeated sequences in the mitogenome, extra-long cox2 gene and paralogous nuclear rRNA clusters.
Autorzy:: Gastineau R; Institute of Marine and Environmental Sciences, University of Szczecin, Szczecin, Poland. .
Lemieux C; Département de Biochimie, de Microbiologie et de Bio-Informatique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Quebec, QC, Canada.
Turmel M; Département de Biochimie, de Microbiologie et de Bio-Informatique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Quebec, QC, Canada.
Otis C; Plateforme d'Analyse Génomique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Quebec, QC, Canada.
Boyle B; Plateforme d'Analyse Génomique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Quebec, QC, Canada.
Coulis M; CIRAD, UPR GECO, 97285, Le Lamentin, Martinique, France.; GECO, CIRAD, University Montpellier, Montpellier, France.
Gouraud C; UMR CNRS 6553 Ecobio, Université de Rennes, 263 Avenue du Gal Leclerc, CS 74205, CEDEX, 35042, Rennes, France.
Boag B; The James Hutton Institute, Invergowrie, DD2 5DA, Scotland.
Murchie AK; Sustainable Agri-Food Sciences Division, Agri-Food and Biosciences Institute, Belfast, BT9 5PX, Northern Ireland.
Winsor L; College of Science and Engineering, James Cook University of North Queensland, Townsville, QLD, Australia.
Justine JL; ISYEB, Institut de Systématique, Évolution, Biodiversité (UMR7205 CNRS, EPHE, MNHN, UPMC, Université des Antilles), Muséum National d'Histoire Naturelle, CP 51, 55 Rue Buffon, 75231, Paris Cedex 05, France.; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2024 Apr 03; Vol. 14 (1), pp. 7840. Date of Electronic Publication: 2024 Apr 03.
Typ publikacji:: Journal Article
MeSH Terms:: Platyhelminths*/genetics
Genome, Mitochondrial*/genetics
Animals ; Repetitive Sequences, Nucleic Acid ; Phylogeny ; Sequence Analysis, DNA ; RNA, Ribosomal/genetics

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Skocz do pozycji: 6.

Tytuł:: Zoothamnium mariella sp. nov., a marine, colonial ciliate with an atypcial growth pattern, and its ectosymbiont Candidatus Fusimicrobium zoothamnicola gen. nov., sp. nov.
Autorzy:: Kendlbacher V; Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria.
Winter TMR; Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria.
Bright M; Department of Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Apr 01; Vol. 19 (4), pp. e0300758. Date of Electronic Publication: 2024 Apr 01 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Ciliophora*/genetics
Gammaproteobacteria*/genetics
In Situ Hybridization, Fluorescence ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA ; DNA, Bacterial

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Skocz do pozycji: 7.

Tytuł:: Crimean-Congo Hemorrhagic Fever Virus Diversity and Reassortment, Pakistan, 2017-2020.
Autorzy:: Umair M
Rehman Z
Whitmer S
Mobley M
Fahim A
Ikram A
Salman M
Montgomery JM
Klena JD; Pokaż więcej
Źródło:: Emerging infectious diseases [Emerg Infect Dis] 2024 Apr; Vol. 30 (4), pp. 654-664.
Typ publikacji:: Journal Article
MeSH Terms:: Hemorrhagic Fever Virus, Crimean-Congo*
Hemorrhagic Fever, Crimean*/epidemiology
Animals ; Humans ; Phylogeny ; Pakistan/epidemiology ; Sequence Analysis, DNA

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Skocz do pozycji: 8.

Tytuł:: Towards a unified medical microbiome ecology of the OMU for metagenomes and the OTU for microbes.
Autorzy:: Ma ZS; Computational Biology and Medical Ecology Lab, State Key Lab of Genetic Resources and Evolution, Center for Excellence in Animal Evolution and Genetics, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China. .; Microbiome Medicine and Advanced AI Lab, Cambridge, MA, 02138, USA. .; Faculty of Arts and Science, Harvard University, Cambridge, MA, 02138, USA. .; Pokaż więcej
Źródło:: BMC bioinformatics [BMC Bioinformatics] 2024 Mar 29; Vol. 25 (1), pp. 137. Date of Electronic Publication: 2024 Mar 29.
Typ publikacji:: Journal Article
MeSH Terms:: Microbiota*/genetics
Gastrointestinal Microbiome*
Animals ; Humans ; Metagenome ; Biodiversity ; Sequence Analysis, DNA ; Metagenomics/methods

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Skocz do pozycji: 9.

Tytuł:: Comparison of structural variant callers for massive whole-genome sequence data.
Autorzy:: Joe S; Korea Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Park JL; Aging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.; Department of Functional Genomics, University of Science and Technology (UST), 34113, Daejeon, Republic of Korea.
Kim J; Department of Convergent Bioscience and Informatics, College of Bioscience and Biotechnology, Chungnam National University, Daejeon, 34134, Republic of Korea.
Kim S; Korea Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Park JH; Korea Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.; Department of Bioscience, University of Science and Technology (UST), Daejeon, 34113, Republic of Korea.
Yeo MK; Department of Pathology, Chungnam National University School of Medicine, Daejeon, 35015, Republic of Korea.
Lee D; Korea Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea.
Yang JO; Korea Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea. .; Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea. .
Kim SY; Korea Bioinformation Center (KOBIC), Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Republic of Korea. .; Department of Bioscience, University of Science and Technology (UST), Daejeon, 34113, Republic of Korea. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2024 Mar 28; Vol. 25 (1), pp. 318. Date of Electronic Publication: 2024 Mar 28.
Typ publikacji:: Journal Article
MeSH Terms:: DNA Copy Number Variations*
Genomics*
Humans ; Whole Genome Sequencing ; High-Throughput Nucleotide Sequencing ; Sequence Analysis, DNA ; Genome, Human ; Genomic Structural Variation

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Skocz do pozycji: 10.

Tytuł:: Full-length 16S rRNA gene sequencing by PacBio improves taxonomic resolution in human microbiome samples.
Autorzy:: Buetas E; Genomics & Health Department, FISABIO Foundation, Valencia, Spain.
Jordán-López M; Department of Periodontics, Faculty of Medicine and Dentistry, University of Valencia, Valencia, Spain.
López-Roldán A; Department of Periodontics, Faculty of Medicine and Dentistry, University of Valencia, Valencia, Spain.
D'Auria G; Sequencing and Bioinformatics Service, Fundació Per Al Foment de La Investigació Sanitària I Biomèdica de La Comunitat Valenciana (FISABIO-Salut Pública), València, Spain.
Martínez-Priego L; Sequencing and Bioinformatics Service, Fundació Per Al Foment de La Investigació Sanitària I Biomèdica de La Comunitat Valenciana (FISABIO-Salut Pública), València, Spain.
De Marco G; Sequencing and Bioinformatics Service, Fundació Per Al Foment de La Investigació Sanitària I Biomèdica de La Comunitat Valenciana (FISABIO-Salut Pública), València, Spain.
Carda-Diéguez M; Genomics & Health Department, FISABIO Foundation, Valencia, Spain. .
Mira A; Genomics & Health Department, FISABIO Foundation, Valencia, Spain.; CIBER Center for Epidemiology and Public Health, Madrid, Spain.; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2024 Mar 25; Vol. 25 (1), pp. 310. Date of Electronic Publication: 2024 Mar 25.
Typ publikacji:: Journal Article
MeSH Terms:: Microbiota*/genetics
Humans ; RNA, Ribosomal, 16S/genetics ; Genes, rRNA ; Phylogeny ; Sequence Analysis, DNA/methods ; High-Throughput Nucleotide Sequencing/methods

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Skocz do pozycji: 11.

Tytuł:: Amplidiff: an optimized amplicon sequencing approach to estimating lineage abundances in viral metagenomes.
Autorzy:: Bemmelen JV; Intelligent Systems Department, Delft University of Technology, Delft, Netherlands.
Smyth DS; Department of Natural Sciences, Texas A &M University-San Antonio, San Antonio, TX, USA.
Baaijens JA; Intelligent Systems Department, Delft University of Technology, Delft, Netherlands. .; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA. .; Pokaż więcej
Źródło:: BMC bioinformatics [BMC Bioinformatics] 2024 Mar 23; Vol. 25 (1), pp. 126. Date of Electronic Publication: 2024 Mar 23.
Typ publikacji:: Journal Article
MeSH Terms:: Metagenome*
Microbiota*
DNA Primers/genetics ; Algorithms ; Sequence Analysis, DNA/methods ; High-Throughput Nucleotide Sequencing/methods ; RNA, Ribosomal, 16S/genetics

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Skocz do pozycji: 12.

Tytuł:: High-throughput sequencing of insect specimens with sub-optimal DNA preservation using a practical, plate-based Illumina-compatible Tn5 transposase library preparation method.
Autorzy:: Cobb L; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
de Muinck E; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
Kollias S; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
Skage M; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
Gilfillan GD; Department of Medical Genetics, Oslo University Hospital Ullevål and University of Oslo, Oslo, Norway.
Sydenham MAK; Norwegian Institute for Nature Research (NINA), Oslo, Norway.
Qiao SW; Department of Immunology, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.
Star B; Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Mar 22; Vol. 19 (3), pp. e0300865. Date of Electronic Publication: 2024 Mar 22 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: DNA*/genetics
High-Throughput Nucleotide Sequencing*/methods
Transposases*
Gene Library ; Ethanol ; Sequence Analysis, DNA/methods

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Skocz do pozycji: 13.

Tytuł:: GNNMF: a multi-view graph neural network for ATAC-seq motif finding.
Autorzy:: Zhang S; School of Cyber Science and Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China.
Wu X; School of Artificial Intelligence, Jilin University, Changchun, 130012, China.
Lian Z; School of Cyber Science and Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China. .
Zuo C; Institute of Artificial Intelligence, Donghua University, Shanghai, 201620, China.
Wang Y; School of Artificial Intelligence, Jilin University, Changchun, 130012, China. .; Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2024 Mar 21; Vol. 25 (1), pp. 300. Date of Electronic Publication: 2024 Mar 21.
Typ publikacji:: Journal Article
MeSH Terms:: Chromatin Immunoprecipitation Sequencing*
High-Throughput Nucleotide Sequencing*
Humans ; Animals ; Mice ; Sequence Analysis, DNA ; Chromatin/genetics ; Neural Networks, Computer

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Skocz do pozycji: 14.

Tytuł:: Full genome sequence analysis of African swine fever virus isolates from Cameroon.
Autorzy:: Goatley LC; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Freimanis G; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Tennakoon C; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Foster TJ; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Quershi M; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Dixon LK; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Batten C; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.
Forth JH; Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald, Insel Riems, Germany.
Wade A; National Veterinary Laboratory (LANAVET), Garoua, Cameroon.
Netherton C; The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, United Kingdom.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Mar 21; Vol. 19 (3), pp. e0293049. Date of Electronic Publication: 2024 Mar 21 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: African Swine Fever Virus*
African Swine Fever*/epidemiology
Swine ; Animals ; Cameroon/epidemiology ; Sus scrofa/genetics ; Sequence Analysis ; Sequence Analysis, DNA

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Skocz do pozycji: 15.

Tytuł:: Fine-Tuning of DADA2 Parameters for Multiregional Metabarcoding Analysis of 16S rRNA Genes from Activated Sludge and Comparison of Taxonomy Classification Power and Taxonomy Databases.
Autorzy:: Babis W; Department of Plant Physiology, Genetics and Biotechnology, University of Warmia and Mazury in Olsztyn, 10-719 Olsztyn, Poland.
Jastrzebski JP; Department of Plant Physiology, Genetics and Biotechnology, University of Warmia and Mazury in Olsztyn, 10-719 Olsztyn, Poland.
Ciesielski S; Department of Environmental Biotechnology, University of Warmia and Mazury in Olsztyn, 11-709 Olsztyn, Poland.; Pokaż więcej
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2024 Mar 20; Vol. 25 (6). Date of Electronic Publication: 2024 Mar 20.
Typ publikacji:: Journal Article
MeSH Terms:: Bacteria*/genetics
Sewage*
RNA, Ribosomal, 16S/genetics ; Genes, rRNA ; Sequence Analysis, DNA/methods ; High-Throughput Nucleotide Sequencing/methods

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Skocz do pozycji: 16.

Tytuł:: Anaerobutyricum soehngenii Reduces Hepatic Lipogenic Pathways and Increases Intestinal Gluconeogenic Gene Expression in Metabolic-Dysfunction-Associated Steatotic Liver Disease (MASLD) Mice.
Autorzy:: Mak AL; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
Augustijn QJJ; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
Heymann CJF; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
Havik S; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
Verdoes X; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
Rios-Morales M; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
Bosmans LA; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
Verheij J; Department of Pathology, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
Meijnikman AS; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
de Jonge PA; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
Herrema H; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
de Vos WM; Caelus Health, 1105 BP Amsterdam, The Netherlands.; Laboratory of Microbiology, Wageningen University & Research, 6708 WE Wageningen, The Netherlands.; Human Microbiome Research Program, Faculty of Medicine, University of Helsinki, FI-00014 Helsinki, Finland.
Nieuwdorp M; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
Grefhorst A; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.
Holleboom AG; Department of (Experimental) Vascular Medicine, Amsterdam University Medical Centers, Location AMC, 1105 AZ Amsterdam, The Netherlands.; Pokaż więcej
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2024 Mar 20; Vol. 25 (6). Date of Electronic Publication: 2024 Mar 20.
Typ publikacji:: Journal Article
MeSH Terms:: Fatty Liver*/etiology
Fatty Liver*/genetics
Metabolic Diseases*
Clostridiales*
Male ; Animals ; Mice ; Mice, Inbred C57BL ; Base Composition ; Gluconeogenesis ; Phylogeny ; RNA, Ribosomal, 16S ; Sequence Analysis, DNA ; Butyrates ; Gene Expression ; Phosphatidate Phosphatase
SCR Organism:: Anaerobutyricum soehngenii

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Skocz do pozycji: 17.

Tytuł:: Bayesian inference of relative fitness on high-throughput pooled competition assays.
Autorzy:: Razo-Mejia M; Department of Biology, Stanford University, Stanford, California, United States of America.
Mani M; NSF-Simons Center for Quantitative Biology, Northwestern University, Chicago, Illinois, United States of America.; Department of Engineering Sciences and Applied Mathematics, Northwestern University, Chicago, Illinois, United States of America.
Petrov D; Department of Biology, Stanford University, Stanford, California, United States of America.; Stanford Cancer Institute, Stanford University School of Medicine, Stanford, California, United States of America.; Chan Zuckerberg Biohub, San Francisco, California, United States of America.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2024 Mar 15; Vol. 20 (3), pp. e1011937. Date of Electronic Publication: 2024 Mar 15 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Software*
High-Throughput Screening Assays*
Bayes Theorem ; Sequence Analysis, DNA ; Gene Library

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Skocz do pozycji: 18.

Tytuł:: Early assessment of fungal and oomycete pathogens in greenhouse irrigation water using Oxford nanopore amplicon sequencing.
Autorzy:: Kudjordjie EN; Department of Agroecology, Faculty of Technical Sciences, Aarhus University, Slagelse, Denmark.
Schmidt-Høier AS; Teknologisk Institut Gregersensvej, Taastrup, Denmark.
Brøndum MB; Teknologisk Institut Gregersensvej, Taastrup, Denmark.
Johnsen MG; Teknologisk Institut Gregersensvej, Taastrup, Denmark.
Nicolaisen M; Department of Agroecology, Faculty of Technical Sciences, Aarhus University, Slagelse, Denmark.
Vestergård M; Department of Agroecology, Faculty of Technical Sciences, Aarhus University, Slagelse, Denmark.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Mar 15; Vol. 19 (3), pp. e0300381. Date of Electronic Publication: 2024 Mar 15 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Nanopores*
Oomycetes*/genetics
Reproducibility of Results ; Fungi/genetics ; Sequence Analysis, DNA ; DNA ; High-Throughput Nucleotide Sequencing/methods

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Skocz do pozycji: 19.

Tytuł:: HaplotagLR: An efficient and configurable utility for haplotagging long reads.
Autorzy:: Holmes MJ; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.
Mahjour B; Department of Medicinal Chemistry, University of Michigan, Ann Arbor, Michigan, United States of America.
Castro CP; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.
Farnum GA; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.
Diehl AG; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.
Boyle AP; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.; Department of Human Genetics, University of Michigan, Ann Arbor, Michigan, United States of America.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2024 Mar 13; Vol. 19 (3), pp. e0298688. Date of Electronic Publication: 2024 Mar 13 (Print Publication: 2024).
Typ publikacji:: Journal Article
MeSH Terms:: Genomics*/methods
Genome, Human*
Humans ; Sequence Analysis, DNA/methods ; Haplotypes/genetics ; High-Throughput Nucleotide Sequencing/methods ; Algorithms

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Skocz do pozycji: 20.

Tytuł:: ReporType: A Flexible Bioinformatics Tool for Targeted Loci Screening and Typing of Infectious Agents.
Autorzy:: Cruz H; Institute of Biomedicine-iBiMED, Department of Medical Sciences, University of Aveiro, 3810-193 Aveiro, Portugal.
Pinheiro M; Institute of Biomedicine-iBiMED, Department of Medical Sciences, University of Aveiro, 3810-193 Aveiro, Portugal.
Borges V; Genomics and Bioinformatics Unit, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), 1649-016 Lisbon, Portugal.; Pokaż więcej
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2024 Mar 09; Vol. 25 (6). Date of Electronic Publication: 2024 Mar 09.
Typ publikacji:: Journal Article
MeSH Terms:: Computational Biology*
Genomics*
Humans ; Sequence Analysis, DNA ; Software ; Bacteria/genetics ; High-Throughput Nucleotide Sequencing

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